From fischl@nmr.mgh.harvard.edu Mon Jun 25 11:50:46 2018
From: Bruce Fischl <fischl@nmr.mgh.harvard.edu>
To: freesurfer@nmr.mgh.harvard.edu
Subject:
 Re: [Freesurfer] mri_vol2surf: dACC/Insula clusters on surface not found
Date: Mon, 25 Jun 2018 11:50:46 -0400
Message-ID: <alpine.LRH.2.20.1806251150160.12577@gate.nmr.mgh.harvard.edu>
In-Reply-To:
 <CAGqM=ZixrF1L28fPx_fZXhmnL_Xkx1R_LpqOyohMcxYauFxmjA@mail.gmail.com>
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Hi Srishti

you should be able to load the volumetric maps with the surfaces and make=20
sure that your clusters are contained within the surface.

cheers
Bruce
On Mon, 25 Jun=20
2018, srishti goel wrote:

>=20
> =C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0External Email - Use Cautio=
n=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0
>=20
> They are separate clusters not the same clusters but we both of those don't=
 show up when we
> project the volume maps on surface. Every other cluster comes up and this h=
as happened in
> about 2-3 files. Are you absolutely sure that the surface in freesurfer inc=
ludes dACC and
> insula?
>=20
> Best,
> Srishti
> Social/Clinical Research Specialist
> Child Imaging Research and Life Experiences Lab
> University of North Carolina at Chapel Hill
> email (W): srishtig(a)email.unc.edu
> skype: srishti.goel12
>=20
>=20
> On Mon, Jun 25, 2018 at 10:14 AM, Douglas Greve <dgreve(a)mgh.harvard.edu> =
wrote:
>
>       It should be included. But dACC and insula are not close to each othe=
r. How can
>       there be a cluster that spans both?
>=20
>
>       On 6/23/18 7:54 PM, srishti goel wrote:
>
>       =C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0External Email - Use =
Caution=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0
>
>       Hello,
> I am using mri_vol2surf to project my volume maps on to the surface. There =
is a
> dACC/insula cluster visible in my volume maps that doesn't show up when I p=
roject
> it on the surface.
>=20
> Is that because dACC/insula is not included in surfaces on Freesurfer?
>=20
> Thanks!
>=20
> Best,
> Srishti
> Social/Clinical Research Specialist
> Child Imaging Research and Life Experiences Lab
> University of North Carolina at Chapel Hill
> email (W): srishtig(a)email.unc.edu
> skype: srishti.goel12
>=20
>=20
>=20
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