From BFISCHL@mgh.harvard.edu Wed Apr 17 10:12:52 2024
From: "Fischl, Bruce R.,PHD" <BFISCHL@mgh.harvard.edu>
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] MRInormFindControlPoints
Date: Wed, 17 Apr 2024 14:12:45 +0000
Message-ID: <DM5PR04MB1261DDFF44C44C8EFF6DE781EF0F2@DM5PR04MB1261.namprd04.prod.outlook.com>
In-Reply-To:
 <CAEzPk1ECxc5FfhKnP4NA=mYk-_42D6LTe6w76r6cB=HtPdJ1uQ@mail.gmail.com>
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Hi Shahar

Can you look at the input to that step? Usually it means something prior has =
gone wrong (like the skull stripping remove the entire brain or something). A=
nd maybe post a couple of images of the processing (the orig.mgz, the T1.mgz,=
 the brainmask.mgz, =E2=80=A6)

Cheers
Bruce

From: freesurfer-bounces(a)nmr.mgh.harvard.edu <freesurfer-bounces(a)nmr.mgh.=
harvard.edu> On Behalf Of Shahar Ben Noun
Sent: Wednesday, April 17, 2024 7:41 AM
To: Freesurfer(a)nmr.mgh.harvard.edu
Subject: [Freesurfer] MRInormFindControlPoints


        External Email - Use Caution
Dear freesurfer team,

I am attempting to use freesurfer using fmriprep but I get the following erro=
r message:

error: No such file or directory
error: MRInormFindControlPoints: could not find enough control points
error: No such file or directory
error: MRInormFindControlPoints failed

I've searched the archive but couldn't find a solution.
Does anyone have any thoughts on how to trouble-shoot this one?

Also, I've attached the recon-all.log in case it's of any use.

1) FreeSurfer version: freesurfer-linux-ubuntu20_x86_64-7.3.2-20220804-6354275
2) Platform: Linux
3) PlatformVersion: 5.4.0-159-generic

#176-Ubuntu SMP Mon Aug 14 12:04:20 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux
Tue Apr 16 13:13:35 IDT 2024

4) recon-all.log: see attached

Best regards,
Shahar





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