From fischl@nmr.mgh.harvard.edu Wed Nov 25 10:23:52 2009
From: Bruce Fischl <fischl@nmr.mgh.harvard.edu>
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] script to check multiple cases with tksurfer
Date: Wed, 25 Nov 2009 10:23:48 -0500
Message-ID: <Pine.LNX.4.62.0911251022310.4502@gate.nmr.mgh.harvard.edu>
In-Reply-To: <1259161698.5202.362.camel@riemann.nmr.mgh.harvard.edu>
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you can also write a tcl script to save snapshots to a file and invoke it 
with -tcl <script name>

the script would look something like

set fname snapshot.$subject.tif
save_tiff $fname
exit


cheers,
Bruce

On Wed, 25 Nov 2009, Martin Reuter wrote:

> How about:
>
> setenv SUBJECTS " id1 id2 id3 .. "
>
> foreach s ($SUBJECTS)
> # do stuff
> echo $s
> tksurfer $s ....
> end
>
> (this is for cshell)
>
> Cheers, Martin
>
> On Tue, 2009-11-24 at 17:19 -0800, Mehul Sampat wrote:
>> Hi Folks,
>>
>> I would like to visually check the cortical parcellation for a large
>> number of  patients  (>200) using tksurfer.
>> Is there a script to which I could submit a list of subject id's and
>> get it to
>> launch tksurfer and display the parcellation data for each subject
>> sequentially ?
>>
>> Thanks
>> Mehul
>>
>>
>>
>>
>> _______________________________________________
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>

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