From yusif93@live.com Tue Mar 28 14:16:56 2017
From: yusif Al-kheder <yusif93@live.com>
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Left hemisphere
Date: Tue, 28 Mar 2017 18:16:49 +0000
Message-ID:
 <BLUPR01MB1378F9395A751A3925120672D9320@BLUPR01MB1378.prod.exchangelabs.com>
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Hello is it possible to just create the left hemisphere with white and grey m=
atter intact?

Youssif AlKheder

Youssif Alkheder

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From greve@nmr.mgh.harvard.edu Tue Mar 28 14:37:20 2017
From: Douglas N Greve <greve@nmr.mgh.harvard.edu>
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Left hemisphere
Date: Tue, 28 Mar 2017 14:37:18 -0400
Message-ID: <aca91b7a-4544-b3a5-e40e-c4c733a86952@nmr.mgh.harvard.edu>
In-Reply-To:
 <BLUPR01MB1378F9395A751A3925120672D9320@BLUPR01MB1378.prod.exchangelabs.com>
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do you mean the subject only has a left hemi or that you just don't want=20
to process the right hemi? If the latter, then you can specify -hemi lh


On 03/28/2017 02:16 PM, yusif Al-kheder wrote:
> Hello is it possible to just create the left hemisphere with white and grey=
 matter intact?
>
> Youssif AlKheder
>
> Youssif Alkheder
> _______________________________________________
> Freesurfer mailing list
> Freesurfer(a)nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>

--=20
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve(a)nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/


--===============6845138965387448724==--


From fischl@nmr.mgh.harvard.edu Tue Mar 28 14:38:07 2017
From: Bruce Fischl <fischl@nmr.mgh.harvard.edu>
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Left hemisphere
Date: Tue, 28 Mar 2017 14:38:06 -0400
Message-ID: <alpine.LRH.2.20.1703281437580.26001@gate.nmr.mgh.harvard.edu>
In-Reply-To:
 <BLUPR01MB1378F9395A751A3925120672D9320@BLUPR01MB1378.prod.exchangelabs.com>
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can you explain more about what you are trying to do?

On Tue, 28 Mar 2017,=20
yusif Al-kheder wrote:

> Hello is it possible to just create the left hemisphere with white and grey=
 matter intact?
>
> Youssif AlKheder
>
> Youssif Alkheder
> _______________________________________________
> Freesurfer mailing list
> Freesurfer(a)nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
>

--===============6829686804403167071==--


From yusif93@live.com Tue Mar 28 15:04:10 2017
From: yusif Al-kheder <yusif93@live.com>
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Left hemisphere
Date: Tue, 28 Mar 2017 19:04:05 +0000
Message-ID:
 <BLUPR01MB1378E24B64BF2023BAC6E5F3D9320@BLUPR01MB1378.prod.exchangelabs.com>
In-Reply-To: <aca91b7a-4544-b3a5-e40e-c4c733a86952@nmr.mgh.harvard.edu>
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Yes it's the latter would the command be mri2mesh -hemi lh *subject name *nii=
 file?

Youssif Alkheder

> On Mar 28, 2017, at 2:38 PM, Douglas N Greve <greve(a)nmr.mgh.harvard.edu> =
wrote:
>=20
> do you mean the subject only has a left hemi or that you just don't want=20
> to process the right hemi? If the latter, then you can specify -hemi lh
>=20
>=20
>> On 03/28/2017 02:16 PM, yusif Al-kheder wrote:
>> Hello is it possible to just create the left hemisphere with white and gre=
y matter intact?
>>=20
>> Youssif AlKheder
>>=20
>> Youssif Alkheder
>> _______________________________________________
>> Freesurfer mailing list
>> Freesurfer(a)nmr.mgh.harvard.edu
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>=20
>>=20
>=20
> --=20
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> greve(a)nmr.mgh.harvard.edu
> Phone Number: 617-724-2358
> Fax: 617-726-7422
>=20
> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>=20
> _______________________________________________
> Freesurfer mailing list
> Freesurfer(a)nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>=20
>=20
> The information in this e-mail is intended only for the person to whom it is
> addressed. If you believe this e-mail was sent to you in error and the e-ma=
il
> contains patient information, please contact the Partners Compliance HelpLi=
ne at
> http://www.partners.org/complianceline . If the e-mail was sent to you in e=
rror
> but does not contain patient information, please contact the sender and pro=
perly
> dispose of the e-mail.
>=20


--===============6413874061654521197==--


From greve@nmr.mgh.harvard.edu Tue Mar 28 15:05:14 2017
From: Douglas N Greve <greve@nmr.mgh.harvard.edu>
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Left hemisphere
Date: Tue, 28 Mar 2017 15:05:13 -0400
Message-ID: <75775ed8-b3a9-74aa-2ce6-d0520dac9dc9@nmr.mgh.harvard.edu>
In-Reply-To:
 <BLUPR01MB1378E24B64BF2023BAC6E5F3D9320@BLUPR01MB1378.prod.exchangelabs.com>
MIME-Version: 1.0
Content-Type: multipart/mixed; boundary="===============8180177871554204382=="

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Content-Type: text/plain; charset="utf-8"
Content-Transfer-Encoding: quoted-printable

what is mri2mesh? If it is not our program, then you're on your own


On 03/28/2017 03:04 PM, yusif Al-kheder wrote:
> Yes it's the latter would the command be mri2mesh -hemi lh *subject name *n=
ii file?
>
> Youssif Alkheder
>
>> On Mar 28, 2017, at 2:38 PM, Douglas N Greve <greve(a)nmr.mgh.harvard.edu>=
 wrote:
>>
>> do you mean the subject only has a left hemi or that you just don't want
>> to process the right hemi? If the latter, then you can specify -hemi lh
>>
>>
>>> On 03/28/2017 02:16 PM, yusif Al-kheder wrote:
>>> Hello is it possible to just create the left hemisphere with white and gr=
ey matter intact?
>>>
>>> Youssif AlKheder
>>>
>>> Youssif Alkheder
>>> _______________________________________________
>>> Freesurfer mailing list
>>> Freesurfer(a)nmr.mgh.harvard.edu
>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>
>>>
>> --=20
>> Douglas N. Greve, Ph.D.
>> MGH-NMR Center
>> greve(a)nmr.mgh.harvard.edu
>> Phone Number: 617-724-2358
>> Fax: 617-726-7422
>>
>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>>
>> _______________________________________________
>> Freesurfer mailing list
>> Freesurfer(a)nmr.mgh.harvard.edu
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>>
>> The information in this e-mail is intended only for the person to whom it =
is
>> addressed. If you believe this e-mail was sent to you in error and the e-m=
ail
>> contains patient information, please contact the Partners Compliance HelpL=
ine at
>> http://www.partners.org/complianceline . If the e-mail was sent to you in =
error
>> but does not contain patient information, please contact the sender and pr=
operly
>> dispose of the e-mail.
>>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer(a)nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>

--=20
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve(a)nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/


--===============8180177871554204382==--


From yusif93@live.com Tue Mar 28 15:09:40 2017
From: yusif Al-kheder <yusif93@live.com>
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Left hemisphere
Date: Tue, 28 Mar 2017 19:09:35 +0000
Message-ID:
 <BLUPR01MB137839E9DEAA2475B2AEA382D9320@BLUPR01MB1378.prod.exchangelabs.com>
In-Reply-To: <75775ed8-b3a9-74aa-2ce6-d0520dac9dc9@nmr.mgh.harvard.edu>
MIME-Version: 1.0
Content-Type: multipart/mixed; boundary="===============3497011995697485549=="

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Content-Transfer-Encoding: quoted-printable

Sorry for the confusion I got mixed up between simnibs and FreeSurfer, how wo=
uld I be able to recreate just the left hemisphere of the brain using FreeSur=
fer?

Youssif=20

> On Mar 28, 2017, at 3:05 PM, Douglas N Greve <greve(a)nmr.mgh.harvard.edu> =
wrote:
>=20
> what is mri2mesh? If it is not our program, then you're on your own
>=20
>=20
>> On 03/28/2017 03:04 PM, yusif Al-kheder wrote:
>> Yes it's the latter would the command be mri2mesh -hemi lh *subject name *=
nii file?
>>=20
>> Youssif Alkheder
>>=20
>>> On Mar 28, 2017, at 2:38 PM, Douglas N Greve <greve(a)nmr.mgh.harvard.edu=
> wrote:
>>>=20
>>> do you mean the subject only has a left hemi or that you just don't want
>>> to process the right hemi? If the latter, then you can specify -hemi lh
>>>=20
>>>=20
>>>> On 03/28/2017 02:16 PM, yusif Al-kheder wrote:
>>>> Hello is it possible to just create the left hemisphere with white and g=
rey matter intact?
>>>>=20
>>>> Youssif AlKheder
>>>>=20
>>>> Youssif Alkheder
>>>> _______________________________________________
>>>> Freesurfer mailing list
>>>> Freesurfer(a)nmr.mgh.harvard.edu
>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>=20
>>>>=20
>>> --=20
>>> Douglas N. Greve, Ph.D.
>>> MGH-NMR Center
>>> greve(a)nmr.mgh.harvard.edu
>>> Phone Number: 617-724-2358
>>> Fax: 617-726-7422
>>>=20
>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
>>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>>>=20
>>> _______________________________________________
>>> Freesurfer mailing list
>>> Freesurfer(a)nmr.mgh.harvard.edu
>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>=20
>>>=20
>>> The information in this e-mail is intended only for the person to whom it=
 is
>>> addressed. If you believe this e-mail was sent to you in error and the e-=
mail
>>> contains patient information, please contact the Partners Compliance Help=
Line at
>>> http://www.partners.org/complianceline . If the e-mail was sent to you in=
 error
>>> but does not contain patient information, please contact the sender and p=
roperly
>>> dispose of the e-mail.
>>>=20
>> _______________________________________________
>> Freesurfer mailing list
>> Freesurfer(a)nmr.mgh.harvard.edu
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>=20
>>=20
>=20
> --=20
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> greve(a)nmr.mgh.harvard.edu
> Phone Number: 617-724-2358
> Fax: 617-726-7422
>=20
> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>=20
> _______________________________________________
> Freesurfer mailing list
> Freesurfer(a)nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


--===============3497011995697485549==--


From greve@nmr.mgh.harvard.edu Tue Mar 28 15:48:53 2017
From: Douglas N Greve <greve@nmr.mgh.harvard.edu>
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Left hemisphere
Date: Tue, 28 Mar 2017 15:48:52 -0400
Message-ID: <6f8ab642-9686-12d1-828b-aae6319b069d@nmr.mgh.harvard.edu>
In-Reply-To:
 <BLUPR01MB137839E9DEAA2475B2AEA382D9320@BLUPR01MB1378.prod.exchangelabs.com>
MIME-Version: 1.0
Content-Type: multipart/mixed; boundary="===============5263828124718338839=="

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Content-Type: text/plain; charset="utf-8"
Content-Transfer-Encoding: quoted-printable

use -hemi lh when running recon-all


On 03/28/2017 03:09 PM, yusif Al-kheder wrote:
> Sorry for the confusion I got mixed up between simnibs and FreeSurfer, how =
would I be able to recreate just the left hemisphere of the brain using FreeS=
urfer?
>
> Youssif
>
>> On Mar 28, 2017, at 3:05 PM, Douglas N Greve <greve(a)nmr.mgh.harvard.edu>=
 wrote:
>>
>> what is mri2mesh? If it is not our program, then you're on your own
>>
>>
>>> On 03/28/2017 03:04 PM, yusif Al-kheder wrote:
>>> Yes it's the latter would the command be mri2mesh -hemi lh *subject name =
*nii file?
>>>
>>> Youssif Alkheder
>>>
>>>> On Mar 28, 2017, at 2:38 PM, Douglas N Greve <greve(a)nmr.mgh.harvard.ed=
u> wrote:
>>>>
>>>> do you mean the subject only has a left hemi or that you just don't want
>>>> to process the right hemi? If the latter, then you can specify -hemi lh
>>>>
>>>>
>>>>> On 03/28/2017 02:16 PM, yusif Al-kheder wrote:
>>>>> Hello is it possible to just create the left hemisphere with white and =
grey matter intact?
>>>>>
>>>>> Youssif AlKheder
>>>>>
>>>>> Youssif Alkheder
>>>>> _______________________________________________
>>>>> Freesurfer mailing list
>>>>> Freesurfer(a)nmr.mgh.harvard.edu
>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>
>>>>>
>>>> --=20
>>>> Douglas N. Greve, Ph.D.
>>>> MGH-NMR Center
>>>> greve(a)nmr.mgh.harvard.edu
>>>> Phone Number: 617-724-2358
>>>> Fax: 617-726-7422
>>>>
>>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
>>>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>>>>
>>>> _______________________________________________
>>>> Freesurfer mailing list
>>>> Freesurfer(a)nmr.mgh.harvard.edu
>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>
>>>>
>>>> The information in this e-mail is intended only for the person to whom i=
t is
>>>> addressed. If you believe this e-mail was sent to you in error and the e=
-mail
>>>> contains patient information, please contact the Partners Compliance Hel=
pLine at
>>>> http://www.partners.org/complianceline . If the e-mail was sent to you i=
n error
>>>> but does not contain patient information, please contact the sender and =
properly
>>>> dispose of the e-mail.
>>>>
>>> _______________________________________________
>>> Freesurfer mailing list
>>> Freesurfer(a)nmr.mgh.harvard.edu
>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>
>>>
>> --=20
>> Douglas N. Greve, Ph.D.
>> MGH-NMR Center
>> greve(a)nmr.mgh.harvard.edu
>> Phone Number: 617-724-2358
>> Fax: 617-726-7422
>>
>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>>
>> _______________________________________________
>> Freesurfer mailing list
>> Freesurfer(a)nmr.mgh.harvard.edu
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> _______________________________________________
> Freesurfer mailing list
> Freesurfer(a)nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>

--=20
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve(a)nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/


--===============5263828124718338839==--


