On 2 Dec 2016, at 13:33, Sebastian Huhn <huhn@cbs.mpg.de> wrote:

Dear Eugenio,

thanks for your fast response.
I am using FS 6.0.0beta (ubuntu-xenial-amd64).

Best,
Sebastian

----- Original Message -----
From: "Iglesias Gonzalez, Eugenio" <e.iglesias@ucl.ac.uk>
To: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu>
Sent: Friday, December 2, 2016 2:23:15 PM
Subject: Re: [Freesurfer] HC Subfields LongHippo

Dear Sebastian, 
Are you using a dev version? If you are using the 6.0 beta, the command should definitely be there. 
Can you please send me the exact version you’re using? 
Cheers, 
/Eugenio 

Juan Eugenio Iglesias 
ERC Senior Research Fellow 
Translational Imaging Group 
University College London 
http://www.jeiglesias.com 
http://cmictig.cs.ucl.ac.uk/ 





On 2 Dec 2016, at 12:01, Sebastian Huhn < huhn@cbs.mpg.de > wrote: 

Dear Freesurfer Community, 

I ran the Freesurfer longitudinal pipeline for my subjects (7T, T1_data, 2 timepoints each). 
Now I want to continue with the longitudinal segmentation of hippocampal subfields: 
https://surfer.nmr.mgh.harvard.edu/fswiki/LongitudinalHippocampalSubfields 

However, when I want to run the command: 
longHippoSubfieldsT1.sh <baseID> 

I get the error message "bash: longHippoSubfieldsT1.sh: command not found" 

First thing I did, was checking the Freesurfer folder for the longHippo..sh file. 
I am using FS 6.0 but the file is not available. 

So my questions: where can I get the file longHippoSubfieldsT1.sh or what else can I do to proceed with the HC subfield segmentation? 

Thanks a lot for your support 
Best 
Sebastian 
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The information in this e-mail is intended only for the person to whom it is
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but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

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