Hi R,

Thanks for your quick response. 

We actually did that initially and it did not work unfortunately.

Could you provide me with segmentations for a certain scan? Or do you see any other possibility to make it work? 

Best,

Helen


______________________ 

Helen Friedrich, B.Sc.


Doctoral Student 

Netstim Laboratory 

Center for Brain Circuit Therapeutics

Department of Neurology 

Harvard Medical School


Brigham and Women’s Hospital 

75 Francis St, Boston MA 02115 

brighamandwomens.org 

 

 

 


Von: fsbuild <fsbuild@contbay.com>
Gesendet: Mittwoch, 28. Februar 2024 17:20
An: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Cc: Friedrich, Helen <hfriedrich@bwh.harvard.edu>
Betreff: Re: [Freesurfer] Support Request NextBrain
 

        External Email - Use Caution        

 
The mri_synthseg script and python in the freesurfer disrtibution you are running are not entirely compatible with the arm64 M1, M2, M3 processors in silicon Macs.   You could try installing and running the development build of Freesurfer for the silicon Mac via the link below.  (After download, right click on the .pkg installer, and select open with default, then follow the prompts).

https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/dev/freesurfer-macOS-darwin_arm64-dev.pkg

We would be interested to know if you run into such issues with the above development build.  Please keep in mind a development build can be unstable and has not been tested like an actual release.  Your numerical result may differ with the development build compared to the previous build/release.

- R.

On Feb 28, 2024, at 14:25, Friedrich, Helen <hfriedrich@bwh.harvard.edu> wrote:

Dear Support Team,

I'm reaching out for assistance with setting up NextBrain - mri_synthseg. 

Unfortunately, I could not make it work. There seems to be an issue with the np.float128-section. This error keeps showing up: 
<image.png>
I have also tried to delete np.float128 from the script (as per suggestion from my colleague). However, the same error showed up. 

I'm working on a macOS M1. 

I would be very grateful for your assistance. 

Best, 

Helen 
______________________ 
Helen Friedrich, B.Sc.

Doctoral Student 
Netstim Laboratory 
Center for Brain Circuit Therapeutics
Department of Neurology 
Harvard Medical School

Brigham and Women’s Hospital 
75 Francis St, Boston MA 02115 

 

 <Outlook-jaw0jfh4.png>

 


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