Hi Bruce,Thank you very much for your quick answer.
I am not very sure about what "retain all edits" means. Do you mean that I can rerun them all again, and it will take care of all those edits I have made? Or is there any way that I can achieve this? As there are many subjects and doing edits have taken a long time, so I am really eager for a way to save the editting time. And when I did all the edits, I saved a backup before running the rest steps.
Thanks again for your help!
Jin
On Thu, Jan 13, 2011 at 5:42 PM, Bruce Fischl
<fischl@nmr.mgh.harvard.edu> wrote:
Hi Jin,
I would just run them all again. You should be able to retain all edits, although I would make a backup just in case :)
Bruce
On Thu, 13 Jan 2011, Jin Li wrote:
Dear Freesurfer experts,
Our data was previously processed by Freesurfer v4.5, recently I visually
checked the results and did manual correction under Freesurfer v5.0. Then
ran the rest steps under Freesurfer v5.0. Here are my 2 questions.
1. Is it acceptable to run the first and second steps in previous version,
then correct manually and run the rest steps in a newer version?
2. In some subjects, the pial surface was corrected, followed by a
command -autorecon2-cp
-autorecon3, so stages 21-31 were re-processed.
In other subjects, which wm surface was corrected, stages 15-31 were
re-processed, while for those with control point added, stages 12-31 were
re-processed. Then is it acceptable that different stages were processed
under Freesurfer v5.0 among subjects? Can I do group analysis among these
subjects?
Thank you in advance for any suggestion.
Jin
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