Can you look at your 3rd run (and cor-3.img) in tkmedit to see if there
are problems with it?
Jenn Segawa wrote:
Hi,
I'm having a problem motion correcting my data. My runs have been
converted into .mgz files, and I run recon-all -motioncor -s
<subjName>, which runs smoothly until it starts averaging, at
which point I get the following:
------------------------------------------------------------------------------------------
Averaging
Fri Mar 3 11:32:49 EST 2006
/autofs/space/oldcask_003/users/gow/LEX02/aMRI_new/LEX02011
inhibiting isotropic volume interpolation
1 of 6: reading
/autofs/space/oldcask_003/users/gow/LEX02/aMRI_new/LEX02011/mri/tmp-mri_mot
ion_correct.fsl-9069/cor-1.img...
2 of 6: reading
/autofs/space/oldcask_003/users/gow/LEX02/aMRI_new/LEX02011/mri/tmp-mri_mot
ion_correct.fsl-9069/cor-2.img...
3 of 6: reading
/autofs/space/oldcask_003/users/gow/LEX02/aMRI_new/LEX02011/mri/tmp-mri_mot
ion_correct.fsl-9069/cor-3.img...
INFO: analyzeRead(): min = 0, max = 940
INFO: analyzeRead(): min = 0, max = 820.699
frame = 1, slice = 0, k=128, row = 0
nread = 0, nexpected = 256
analyzeRead2(): error reading from file
/autofs/space/oldcask_003/users/gow/LEX02/aMRI_new/
LEX02011/mri/tmp-mri_motion_correct.fsl-9069/cor-3.img
mri_average:
MRIread(/autofs/space/oldcask_003/users/gow/LEX02/aMRI_new/LEX02011/mri/tmp-mr
i_motion_correct.fsl-9069/cor-3.img) failed
Linux oldcask 2.6.9-22.ELsmp #1 SMP Sat Oct 8 19:11:43 CDT 2005 i686
athlon i386 GNU/Linux
recon-all exited with ERRORS at Fri Mar 3 11:33:10 EST 2006
--------------------------------------------------
This happens with all my subjects. Any suggestions as to what I'm
doing wrong?
Thanks,
Jenn
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