Hi!
Thanks for the replies!
1. I think, I need some help with the stats output of mris_calc:
e. g. mris_calc lh.area stats gives me
mris_calc lh.area stats
mris_calc: Insufficient number of arguments.
You should specify '<curvFile1> <ACTION> <curvFile2>'
Use a '-u' for full usage instructions.
which is a quite humiliating error message, isn't it ...
2. A look into the /surf/ directory shows that lh.area.mid has a size of zero byte. That does not look very sensible.
3. Disk-Space: I am running my experiments on a NAS with >300 MB free diskspace. Even my local computer has some GB's left and I don't see anything written locally. Memory and processor speed should be enough (4 MB quad-core).
-------------------------------------------
Von: freesurfer-bounces@nmr.mgh.harvard.edu im Auftrag von Nick Schmansky[SMTP:NICKS@NMR.MGH.HARVARD.EDU]
Gesendet: Dienstag, 23. Juni 2009 01:04:35
An: Grimm, Oliver
Cc: Freesurfer Mailing List
Betreff: Re: [Freesurfer] concerning my posting: curvature file'lh.area.mid' has wrong magic number - add logfileDiese Nachricht wurde automatisch von einer Regel weitergeleitet.Oliver,
That's a strange error. Did you run out of disk space? I can only
think of that as a reason for a corrupted curvature file.Nick
> _______________________________________________On Mon, 2009-06-22 at 14:00 +0200, Oliver Grimm wrote:
> Hi!
>
> I just mentiones my error
>
> curvature file 'lh.area.mid' has wrong magic number
>
> on a openSUSE 11.1 system:
>
> /data/MOODS2/freesurfer/1005/surf
>
> mris_calc -o lh.area.mid lh.area add lh.area.pial
>
>
> mris_calc -o lh.area.mid lh.area.mid div 2
>
>
> mris_calc -o lh.volume lh.area.mid mul lh.thickness
>
>
> mris_calc: curvature file 'lh.area.mid' has wrong magic number.
>
> Linux impsy-pc4 2.6.27.19-3.2-default #1 SMP 2009-02-25 15:40:44 +0100
> x86_64 x8
> 6_64 x86_64 GNU/Linux
>
> recon-all exited with ERRORS at Sat Jun 20 00:17:58 CEST 2009
>
>
> I forgot to attach the recon-all.log for further details. I attached
> it.
>
> Thank you for your held,
>
> Oliver Grimm
>
>
>
> --
> Dr. med. Oliver Grimm
> Zentralinstitut für Seelische Gesundheit
> Institut für Neuropsychologie und Klinische Psychologie &
> AG Imaging in der Psychiatrie
> J5
> 68159 Mannheim
>
> Tel: +49-621-1703-6341
> Fax: +49-621-1703-6305
> email oliver.grimm@zi-mannheim.de
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
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