Dear Freesurfer Experts,

I want to customize the directory so I can run the following command

mris_preproc --fsgd gender_age.fsgd   --cache-in thickness.fwhm10.fsaverage   --target fsaverage   --hemi lh   --out lh.gender_age.thickness.10.mgh

However, after running this command it keeps checking in the wrong directory for the files. How do I change the directory, do I change it in the FSGD file I made or somewhere else? I ran the recon-all qcache, but I need to run this on the previously cached data. I would greatly appreciate it if you can assist me with this problem.

Best Regards,

Gaurang Shyam LImachia