phew. Then you should be able to copy those over to your new runs if you want (that is, copy all the 1s and 255s into the volumes in the new directories). I assume you are rerunning recon-all from scratch? Or you could just copy the whole directory, and rerun recon-all -all on the new directory and it should recreate everything while preserving edits

cheers
Bruce

On Mon, 28 Jul 2014, Jason Tourville wrote:

Hi Bruce,Used v5.3 for original edits using the "recon" mode in freeview so

edits used 1 for "off" and 255 for "on". 

Jason


On Mon, Jul 28, 2014 at 9:22 AM, Bruce Fischl <fischl@nmr.mgh.harvard.edu>
wrote:
      Hi Jason

      what version? Did it support recon mode? The edits need to use 1
      for "off" and 255 for "on", otherwise we can't track them.

      cheers
      Bruce
      On Mon, 28 Jul 2014, Jason Tourville wrote:

            Hi Bruce,I used Freeview to edit the brainmask.mgz,
            wm.mgz, and
            brain.finalsurfs.manedit.mgz volumes. 

            Cheers,
            Jason


            On Fri, Jul 25, 2014 at 9:23 PM, Bruce Fischl
            <fischl@nmr.mgh.harvard.edu>
            wrote:
                  Hi Jason.
                  How were the edits done?
                  Cheers
                   Bruce

                  > On Jul 25, 2014, at 10:40 AM, Jason
            Tourville
                  <jaytour@gmail.com> wrote:
                  >
                  > Hi there,
                  > We have performed manual volume edits on a
            number of scans.
                  Recently, we ran those scans through recon-all
            with a new Tal
                  volume target. The seg and surfaces are
            improved using the new
                  target but most of the manual edits performed
            on the earlier
                  version would improve the surfaces. Is there
            an established
                  means for porting the manually edited voxel
            values to the
                  volumes of the new re-con?
                  >
                  > Thanks,
                  > Jason
                  >
                  >
                  > --
                  > Jason A. Tourville, Ph.D.
                  > Research Assistant Professor
                  > Department of Speech, Language,
                  > and Hearing Sciences
                  > Boston University
                  > 677 Beacon St.
                  > Boston, MA 02215
                  > Phone: (617)353-9484
                  > Fax: (617)353-7755
            > _______________________________________________
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            --
            Jason A. Tourville, Ph.D.
            Research Assistant Professor
            Department of Speech, Language,
            and Hearing Sciences
            Boston University
            677 Beacon St.
            Boston, MA 02215
            Phone: (617)353-9484
            Fax: (617)353-7755


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The information in this e-mail is intended only for the person to whom
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HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you
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but does not contain patient information, please contact the sender
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dispose of the e-mail.




--
Jason A. Tourville, Ph.D.
Research Assistant Professor
Department of Speech, Language,
and Hearing Sciences
Boston University
677 Beacon St.
Boston, MA 02215
Phone: (617)353-9484
Fax: (617)353-7755

_______________________________________________
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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.