ok,<div><br></div><div>how do I get a list of all the commands after mrsi_make_surface?<br><br><div class="gmail_quote">2012/10/24 Bruce Fischl <span dir="ltr">&lt;<a href="mailto:fischl@nmr.mgh.harvard.edu" target="_blank">fischl@nmr.mgh.harvard.edu</a>&gt;</span><br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi Pietro,<br>
<br>
I don&#39;t think we&#39;ve setup a pipeline for that yet. You&#39;ll need to rerun the individual commands after mris_make_surfaces (including mris_thickness to regenerate the thickness maps)<br>
<br>
cheers<br>
Bruce<div class="im"><br>
<br>
<br>
On Wed, 24 Oct 2012, pietro de rossi wrote:<br>
<br>
</div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div class="im">
 Hi FreeSurfer people,<br>
I&#39;m considering editing through direct repositioning in freeview (under<br>
tools-&gt;reposition surface) for some scans.<br>
<br>
After that, do I need to rerun everything through the whole recon-all<br>
pipeline? What would be the command line for that?<br>
<br>
Thank you very much,<br>
<br>
Pietro<br>
<br>
--<br>
Pietro De Rossi, MD<br>
------------------------------<u></u>-------<br>
Sapienza Università di Roma, Facoltà di Medicina e Psicologia, Dipartimento<br>
NESMOS (Neuroscienze, Salute Mentale, Organi di Senso), Ospedale<br>
Sant&#39;Andrea, Via di Grottarossa 1035-1039, 00189 Roma<br>
<br>
NESMOS Department (Neurosciences, Mental Health and Sensory Functions),<br></div>
School of Medicine and Psychology, Sapienza University, Sant?Andrea Hospital,<div class="im"><br>
Via di Grottarossa 1035-1039, 00189 Rome, Italy<br>
<br>
Neurobehavioral Clinical Research Section, Social and Behavioral Research<br>
Branch, National Human Genome Research Institute (NHGRI), National<br>
Institutes of Health (NIH), Bethesda, Maryland 20892, USA<br>
<br>
<br>
</div></blockquote>
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</blockquote></div><br><br clear="all"><div><br></div>-- <br><span style="border-collapse:collapse;color:rgb(34,34,34);font-size:13px"><div style="font-family:arial,sans-serif"><span><font color="#222222">Pietro De Rossi</font></span>, MD</div>
<div style="font-family:arial,sans-serif">-------------------------------------<br><span style="font-size:10pt;font-family:&#39;Arial Narrow&#39;">Sapienza Università di Roma, Facoltà di Medicina e Psicologia, Dipartimento NESMOS (Neuroscienze, Salute Mentale, Organi di Senso), Ospedale Sant&#39;Andrea, Via di Grottarossa 1035-1039, 00189 Roma<br>
</span><span lang="EN-GB" style="font-size:6.5pt;font-family:&#39;Arial Narrow&#39;"><br></span><span lang="EN-GB" style="font-size:10pt;font-family:&#39;Arial Narrow&#39;">NESMOS Department (Neurosciences, Mental Health and Sensory Functions), School of Medicine and Psychology, Sapienza University, Sant’Andrea Hospital, Via di Grottarossa 1035-1039, 00189 Rome, Italy</span></div>
</span><span style="border-collapse:collapse;color:rgb(34,34,34);font-family:&#39;Arial Narrow&#39;;font-size:13px"><div><span style="border-collapse:collapse;color:rgb(34,34,34);font-family:&#39;Arial Narrow&#39;;font-size:13px"><br>
</span></div>Neurobehavioral Clinical Research Section, Social and Behavioral Research Branch, National Human Genome Research Institute (NHGRI), National Institutes of Health (NIH), Bethesda, Maryland 20892, USA</span><br>

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