Hello FreeSurfer Developers,
"
/home/share/test2/bert/surf
mris_curvature -w lh.white.preaparc
total integrated curvature = 10.012*4pi (125.809) --> -9 handles
ICI = 164.9, FI = 1856.5, variation=28617.761
writing Gaussian curvature to ./lh.white.preaparc.K...done.
writing mean curvature to ./lh.white.preaparc.H...done.
rm -f lh.white.H
ln -s lh.white.preaparc.H lh.white.H
Linux wmx 2.6.32-754.12.1.el6.x86_64 #1 SMP Tue Apr 9 14:52:26 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s bert exited with ERRORS at Mon Apr 22 11:44:12 CST 2019
"
And then I checked that, the '?.white.preaparc' had been created while the '?h.white.H/K' had not, so I did some steps described in
http://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllTableStableV6.0, The commands "
mris_curvature -w ?h.white.preaparc " and "
mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 ?h.inflated " were done to generate some files successfully. Howevere, when I continue to use "
mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/?h.curv.stats -F smoothwm <subjid> ?h curv sulc ", there were errors below: "
mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/?h.curv.stats -F smoothwm bert ?h curv sulc
Toggling save flag on curvature files [ ok ]
Outputting results using filestem [ ../stats/?h.curv.stats ]
Toggling save flag on curvature files [ ok ]
Setting surface [ bert/?h.smoothwm ]
Reading surface...MRISread(/home/share/test2/bert/surf/?h.smoothwm): could not open file
No such file or directory
[ ok ]
mris_curvature_stats: could not read surface file /home/share/test2/bert/surf/?h.smoothwm
No such file or directory
"
In fact, the '?h.smoothwm' files exist and I can find it by 'ls' commond.
Any help is greatly appreciated. Thanks.
Mengxing Wang