Dear FreeSurfer experts,
I am running longitudinal processing with FreeSurfer 7.1.0 on MacOX Catalina.
The dataset is 5 time points with T1 data. I tried to run a single subject. So far it succeeded on Step 1 (recon-all at each time point), and Step 2 (-base to build the template), all of them reported successfully. But I failed at step3, recon-all -long, to compare each timepoint with the template.
The log file is attached.
I tried to run several times with different timepoints data, all reported the same stuff. My guess is at the last 9 row, reported that the cp command incorrectly. But I still have no idea to fix it, or maybe I need to go to freesurfer's script file? I have no idea...
Thanks for you time and help in advance!
Stay safe and sound!
Best,
Jieyin