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Thank you! I have run the fs_install_mcr  R2014b in terminal but it is still is not working. �� and I'm not sure why.

Please help

Best wishes,
Isabella

Isabella Leung

Post-Doctorate Fellow in Clinical Research

NICM Health Research Institute, Western Sydney University

e.     i.leung@westernsydney.edu.au    p.     +61 403 234 141       w.     nicm.edu.au

NICM Health Research Institute is an initiative seeded by the Australian and NSW Governments at Western Sydney University


Unit Coordinator for Evidence-Based Practice in Chinese Medicine 
School of Health Sciences, Western Sydney University
e.     i.leung@westernsydney.edu.au    p.     +61 403 234 141   
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From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of fsbuild <fsbuild@contbay.com>
Sent: Friday, May 27, 2022 4:19 PM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Cc: Isabella Leung <I.Leung@westernsydney.edu.au>
Subject: [External] Re: [Freesurfer] Unable to install Matlab runtime to run the SegmentHA function in Mac OS 12.4
 

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Hello Isabella,

Please try running the matlab install script that is provided in the freesurfer distribution with,

$ fs_install_mcr  R2014b

- R..

On May 26, 2022, at 23:18, Isabella Leung <I.Leung@westernsydney.edu.au> wrote:

        External Email - Use Caution        

Hello Freesurfer expert,


I have installed Freesurfer 7.2.0 onto my personal Mac OS (Monterey 12.4). The Recon-all function works but when I try to run the  
segmentHA_T1.sh bert  [SUBJECTS_DIR]
It tells me to install the Matlab R2014b runtime. 

I have downloaded and installed Matlab R2014b but it still tells me that I need to install the "runtime".

I have downloaded the "MCR_R2014b_maci64_installer" but it gets stuck when I try to install and won't let me get past the libjvm.dylib no matter how many times I click the "Allow Anyway" button in my system preferences. 

I'm not sure what to do. Is there a script that I can run that will allow me to install the matlab runtime without being blocked or is there another script that will allow me to run the Segment HA without the matlab runtime installed? 

Many thanks and looking forward to hearing from you.


Best wishes,
Isabella

Isabella Leung
Post-Doctorate Fellow in Clinical Research
NICM Health Research Institute, Western Sydney University
e.     i.leung@westernsydney.edu.au    p.     +61 403 234 141       w.     nicm.edu.au
NICM Health Research Institute is an initiative seeded by the Australian and NSW Governments at Western Sydney University

Unit Coordinator for Evidence-Based Practice in Chinese Medicine 
School of Health Sciences, Western Sydney University
e.     i.leung@westernsydney.edu.au    p.     +61 403 234 141   

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