Can you summarize what you are trying to do? What kind of overlay are you trying to visualize and what exactly do you mean by a “3D image”?
From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu>
On Behalf Of Rachel Wagner
Sent: Thursday, June 30, 2022 2:48 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] How to project SPM image
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Thank you so much for your response – I’m a master’s student and am really struggling - I’ve been stuck trying to do this for about 2 weeks now, so the help is so appreciated!
My results look very grainy in mricron so my supervisor wants me to keep trying in FreeSurfer unfortunately for me.
I uploaded a the brain.mgz volume in freeview, but I’m not sure how to add an overlay and project as a 3D image. Would you happen to have any ideas?
Thank you so, so much again,
Rachel Wagner
From: niels.foit@gmx.de
Sent: June 30, 2022 2:35 PM
To: 'Freesurfer support list'
Subject: Re: [Freesurfer] How to project SPM image
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Sure is, through freeview, however if you already have spm format files, it is much easier to use mricron
Von:
freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu>
Im Auftrag von Rachel Wagner
Gesendet: Donnerstag, 30. Juni 2022 18:18
An: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Betreff: Re: [Freesurfer] How to project SPM image
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Thanks very much, I will absolutely do so! Just so I know – is there not any way of generating such figures in Freesurfer?
From: niels.foit@gmx.de
Sent: June 30, 2022 4:47 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] How to project SPM image
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Rachel, these figures were likely created with a software called mricron, not freesurfer. Check it out :)
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