Dear All,

I ran recon-all using single MPRAGE data set. Processing exited with an error pasted below indicating there is not fsaverage.

Thanks

Ayaz  

#@# BA Labels lh Fri May 27 21:47:56 CDT 2011
INFO: fsaverage subject does not exist in SUBJECTS_DIR
INFO: Creating symlink to fsaverage subject...

 ln -s /usr/local/freesurfer/subjects/fsaverage /usr/local/subjects/fsaverage

ln: creating symbolic link `/usr/local/subjects/fsaverage': Permission denied

 mri_label2label --srcsubject fsaverage --srclabel /usr/local/subjects/fsaverage/label/lh.BA1.label --trgsubject 3t3999_3_1_MPRAGE --trglabel ./lh.BA1.label --hemi lh --regmethod surface

No such file or directory
mri_label2label: could not open label file /usr/local/subjects/fsaverage/label/lh.BA1.label

srclabel = /usr/local/subjects/fsaverage/label/lh.BA1.label
srcsubject = fsaverage
trgsubject = 3t3999_3_1_MPRAGE
trglabel = ./lh.BA1.label
regmethod = surface

srchemi = lh
trghemi = lh
trgsurface = white
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
usehash = 1
Use ProjAbs  = 0, 0
Use ProjFrac = 0, 0
DoPaint 0

SUBJECTS_DIR    /usr/local/subjects
FREESURFER_HOME /usr/local/freesurfer
Loading source label.
Invalid argument
ERROR reading /usr/local/subjects/fsaverage/label/lh.BA1.label
Linux MRI-WorkStation 2.6.32-31-generic #61-Ubuntu SMP Fri Apr 8 18:25:51 UTC 2011 x86_64 GNU/Linux

recon-all -s 3t3999_3_1_MPRAGE exited with ERRORS at Fri May 27 21:47:56 CDT 2011

 


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