It was deleted but then it was created as a link. Does the link exist?
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I am new to FS, and I am having the same error that Krishna had last year. I don't see a link to the 'lh.white.k' file in my surf folder. Has anyone resolved this problem? I can side step the error with '-qcache -measure thickness' to only process thickness files, but I'd like to be able to process all the files in my subject folders. Thanks, Doug
Command line input: recon-all -s <subject> -qcache
Command line output: #@# Qdec Cache preproc lh white.K fsaverage
/surf
mris_preproc --s <subject> --hemi lh --meas white.K --target fsaverage --out lh.white.K.fsaverage.mgh
nsubjects = 1
ERROR: cannot find
/lh.white.K
recon-all -s <subject> exited with ERRORS
It was deleted but then it was created as a link. Does the link exist?
On 3/7/18 1:33 PM, Krishna Patel wrote:
Hi - I would like to do group analysis on freesurfer data that is processed with verson 6. However when I try to runrecon-all -s subjid -qcacheI get following error after it runs for some time and generates some of the files.ERROR: cannot find surf/lh.white.KWhen I look at the log file - I see that this file was deleted. See following.total integrated curvature = -1.022*4pi (-12.846) --> 2 handles ICI = 169.4, FI = 1785.3, variation=28139.036 writing Gaussian curvature to ./lh.white.preaparc.K...done. writing mean curvature to ./lh.white.preaparc.H...done. rm -f lh.white.H ln -s lh.white.preaparc.H lh.white.H rm -f lh.white.K ln -s lh.white.preaparc.K lh.white.K Does anyone have any idea of what might be the issue here? Thanks, -Krishna
I am new to FS, and I am having the same error that Krishna had last year. I don't see a link to the 'lh.white.k' file in my surf folder. Has anyone resolved this problem? I can side step the error with '-qcache -measure thickness' to only process thickness files, but I'd like to be able to process all the files in my subject folders. Thanks, Doug
Command line input: recon-all -s <subject> -qcache
Command line output: #@# Qdec Cache preproc lh white.K fsaverage
/surf
mris_preproc --s <subject> --hemi lh --meas white.K --target fsaverage --out lh.white.K.fsaverage.mgh
nsubjects = 1
ERROR: cannot find
/lh.white.K
recon-all -s <subject> exited with ERRORS
It was deleted but then it was created as a link. Does the link exist?
On 3/7/18 1:33 PM, Krishna Patel wrote:
Hi - I would like to do group analysis on freesurfer data that is processed with verson 6. However when I try to runrecon-all -s subjid -qcacheI get following error after it runs for some time and generates some of the files.ERROR: cannot find surf/lh.white.KWhen I look at the log file - I see that this file was deleted. See following.total integrated curvature = -1.022*4pi (-12.846) --> 2 handles ICI = 169.4, FI = 1785.3, variation=28139.036 writing Gaussian curvature to ./lh.white.preaparc.K...done. writing mean curvature to ./lh.white.preaparc.H...done. rm -f lh.white.H ln -s lh.white.preaparc.H lh.white.H rm -f lh.white.K ln -s lh.white.preaparc.K lh.white.K Does anyone have any idea of what might be the issue here? Thanks, -Krishna