Hi John
you would run recon-all on the MNI 152 T1 image (NOT
your map), then use
mri_vol2surf to map the stats map onto the resulting
surfaces. Note that
this won't give you great results as a bunch of your
clusters will
probably not be near the cortical surface (since in
general subjects
cortices don't align well in MNI 152)
cheers
Bruce
On Fri, 8 Jan 2016, John Anderson
wrote:
> Thanks Bruce,
> if my statistical map "stat1.nii.gz" is in MNI152
standard space what are
> the command lines that I need ( or if possible any
link to wiki)
> Thanks a lot!
>
>
> John
> Sent: Friday, January 08, 2016 at 2:49 PM
> From: "Bruce Fischl"
<fischl@nmr.mgh.harvard.edu>
> To: "Freesurfer support list"
<freesurfer@nmr.mgh.harvard.edu>
> Subject: Re: [Freesurfer] transform statistical map
in MNI to surface
> you wouldn't run it on the stats map - you would
run it on the
> T1-weighted MNI152 volume
>
> > Sent: Friday, January 08, 2016 at 1:41 PM
> > From: "Douglas N Greve"
<greve@nmr.mgh.harvard.edu>
> > To:
freesurfer@nmr.mgh.harvard.edu
> > Subject: Re: [Freesurfer] transform
statistical map in MNI to surface
> > If it is in mni152 space, then you can run
recon-all on the mni152 T1
> > map, then use mri_vol2surf with --regheader to
map the volume tothe
> > surface, then use tksurfer or freeview to view
the resulting map
> >
> > On 01/08/2016 12:49 PM, John Anderson wrote:
> > > Hi Experts,
> > > I have statistical map in MNI space and I
want to view it using
> > > tksurfer how can i transform this map to
a surface ?
> > >
> > > Bests,
> > > John
> > >
> > >
> > >
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> > --
> > Douglas N. Greve, Ph.D.
> > MGH-NMR Center
> >
greve@nmr.mgh.harvard.edu
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> > Fax: 617-726-7422
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