I checked the topology corrected surfaces in recon-all pipeline however i found it didn't do well as still there are many topology defects in the pial surfaces. I know how to correct them manually in freeview but are there any commands to recorrect these topological defects with for example variables ? ( shall i use mris_fix_topology or? )
Thank you.
Thank you.
Cheers
Segonne, F., Pacheco, J., Fischl, B., 2007. Geometrically accurate
topology-correction of cortical surfaces using nonseparating loops. IEEE
Trans Med Imaging 26, 518-529.
Fischl, B., Liu, A., Dale, A.M., 2001. Automated manifold surgery:
constructing geometrically accurate and topologically correct models of
the human cerebral cortex. IEEE Trans Med Imaging 20, 70-80.
Florent Ségonne,Eric GrimsonBruce Fischl, 2003. Topological Correction of
Subcortical Segmentation
MICCAI 2003: Medical Image Computing and Computer-Assisted Intervention -
MICCAI 2003 pp 695-702
On Sat, 23 Sep
2017, Fereshte wrote:
> Where can i find the details?
> Thank you.
>
> On Sat, Sep 23, 2017 at 6:59 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
> Yes, that is part of the recon-all pipeline (actually we have 3 separate
> topology correction procedures, two for the surface and one for the
> volume)
>
> cheers
> Bruce
> On Sat, 23 Sep 2017, Fereshte wrote:
>
> > Dear FreeSurfer Developers Is it possible to correct topological defects automatically
> in
> > FreeSurfer? ( not correcting manually with Recon Edit)
> > Thank you.
> >
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