Please note the command we used:<br><br>mri_mask brainmask.mgz lh.stg.mask.mgz brainout.mgz<br><br>and the result we got was:<br><br>Writing masked volume to brainout.mgz...done.<br><br><div class="gmail_quote">On Fri, May 9, 2008 at 2:39 PM, Daniel H Choi &lt;<a href="mailto:dhchoi@u.northwestern.edu">dhchoi@u.northwestern.edu</a>&gt; wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Hi,<br><br>I have tried applying a binary mask, specifically for STG,
in conjunction with the mri_mask command. We applied it to a brainmask
volume, but we did not get the result we wanted. The output we recieved
was simply the mask that we used. We wish to produce an output that
gives the STG volume alone from the brain, and not from the binary
mask. Are we using the command incorrectly? Thanks<br clear="all"><font color="#888888"><br>-- <br>Daniel Horim Choi<br>Northwestern University<br>Class of 2009<br><a href="mailto:dhchoi@u.northwestern.edu" target="_blank">dhchoi@u.northwestern.edu</a> or<br>

<a href="mailto:dchoi1024@gmail.com" target="_blank">dchoi1024@gmail.com</a>
</font></blockquote></div><br><br clear="all"><br>-- <br>Daniel Horim Choi<br>Northwestern University<br>Class of 2009<br><a href="mailto:dhchoi@u.northwestern.edu">dhchoi@u.northwestern.edu</a> or<br><a href="mailto:dchoi1024@gmail.com">dchoi1024@gmail.com</a>