Hi, I used the commands below, having specified the file paths.<br><br>bbregister --s ${subject} --mov ${pet_nii} --bold --init-fsl --reg ${register_dat}<br> <br>mri_vol2surf --mov ${pet_nii} --reg ${register_dat} --hemi lh --projfrac 0.5 --o ${subj_dir}/bl/lh.pet.mgh<br>
<br>mri_vol2surf --mov ${pet_nii} --reg ${register_dat} --hemi rh --projfrac 0.5 --o ${subj_dir}/bl/rh.pet.mgh<br><br>mri_vol2vol --mov ${pet_nii} --fstarg --reg ${register_dat} --interp nearest --o ${petanat_nii}<br><br>
<br><div class="gmail_quote">On Tue, Mar 9, 2010 at 10:56 AM, Sita Kakunoori <span dir="ltr">&lt;<a href="mailto:sita@nmr.mgh.harvard.edu">sita@nmr.mgh.harvard.edu</a>&gt;</span> wrote:<br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
<br>
Hi Corinna,<br>
<br>
What is the command line that you are trying.<div><div></div><div class="h5"><br>
<br>
<br>
<br>
On Tue, 9 Mar 2010, corinna bauer wrote:<br>
<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Hello,<br>
I am running bbregister with pet scans and a number of the subject&#39;s<br>
registrations were poor. What is the best way to fix inaccurate<br>
coregistrations from bbregister?<br>
<br>
Regards,<br>
Corinna<br>
<br>
</blockquote>
<br>
<br></div></div>
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