Hej Olof,
The CA segmentations (along with all the others) are generated when calling segmentHA_T1.sh the standard way:
segmentHA_T1.sh [SUBJECT_NAME] [SUBJECTS_DIR]
Cheers,
/Eugenio
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Erik Lindberg <erikoloflindberg@gmail.com>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Thursday, December 3, 2020 at 10:04
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] segmentHA_T1.sh
External Email - Use Caution
Hi,
I am trying to run the segmentHA_T1.sh with the suffix CA but I seem not be able to write the call correctly
How should I call this?
best
Olof