On Mon, Nov 24, 2014 at 4:56 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu> wrote:

What is the full terminal output and error msg?

On 11/21/2014 04:14 AM, Anna Jonsson wrote:
> hi, I have tried to make prefrotnal cortex label by doing first
>
>
>
> mri_annotation2label --subject "$subject" --hemi rh --outdir
> "$subject"/label
>
>
>
> mri_mergelabels -i lh.caudalanteriorcingulate.label -i
> lh.caudalmiddlefrontal.label -i lh.lateralorbitofrontal.label -i
> lh.medialorbitofrontal.label -i lh.parsopercularis.label -i
> lh.parsorbitalis.label -i lh.parstriangularis.label -i
> lh.rostralanteriorcingulate.label -i lh.rostralmiddlefrontal.label -i
> lh.superiorfrontal.label -i lh.lateralorbitofrontal.label -o
> lh.prefrontalcortex.label -d /directory/subject/label
>
>
> which does create a label called x.prefrontalcortex.label in each
> persons directory. then however when i try to do
>
> mris_anatomical_stats -l
> $SUBJECTS_DIR/"$subject"/label/lh.prefrontalcortex.label "$subject" lh
> pial | grep "thickness" >> left_prefrontal
>
> i get error and say it cant find label. any pointers on what im doing
> wrong?
>
> thank you
>
>
>
>
>

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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
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