El mié., 24 abr. 2019 a las 19:13, Greve, Douglas N.,Ph.D. (<DGREVE@mgh.harvard.edu>) escribió:

The "locale" error is probably not a problem. Does /media/Data/PEH/NEW_FS_analysis/fsaverage/surf/rh.white exist? What operating system are you using?

On 4/24/2019 6:41 AM, Javier Navas wrote:
        External Email - Use Caution

Dear freesurfer experts,

I want to create an annot from the output of PALM, the vertexwise file corrected by TFCE-FWEp. The values of this files are in 'p-values'.

However, the mri_surfcluster has some problems: it could not recognize the fsaverage and it shows a problem with the 'locale' also. I have permissions of 'write' and 'read' in the fsaverage folder. I use the last dev version,but also it occurs with the stable version of FS 6.0.

I send you the command, with the outputs and the errors.

>$ mri_surfcluster --in ./PALM_results/rh_thickness_n34_10000_PALM_tfce_tstat_fwep.mgz --thmin 0.99 --hemi rh --subject fsaverage --sign pos --surf white --oannot /media/Data/PEH/NEW_FS_analysis/PALM_results/rh_thickness_n34_10000_PALM_tfce_tstat_fwep.annot

Could not set locale

No such file or directory

Could not set locale

thsign = pos, id = 1

version $Id: mri_surfcluster.c,v 1.60 2016/11/01 19:49:22 greve Exp $

hemi = rh

srcid = ./PALM_results/rh_thickness_n34_10000_PALM_tfce_tstat_fwep.mgz

srcsubjid = fsaverage

srcsurf = white

srcframe = 0

thsign = pos

thmin = 0.99

thmax = -1

fdr = -1

minarea = 0

xfmfile = talairach.xfm

nth = -1

subjectsdir = /media/Data/PEH/NEW_FS_analysis

FixMNI = 1

------------- XFM matrix (RAS2RAS) ---------------

/media/Data/PEH/NEW_FS_analysis/fsaverage/mri/transforms/talairach.xfm

1.00000 0.00000 0.00000 0.00000;

0.00000 1.00000 0.00000 0.00000;

0.00000 0.00000 1.00000 0.00000;

0.00000 0.00000 0.00000 1.00000;

----------------------------------------------------

Reading source surface /media/Data/PEH/NEW_FS_analysis/fsaverage/surf/rh.white

MRISread(): could not open file

No such file or directory

mri_surfcluster: could not read surface /media/Data/PEH/NEW_FS_analysis/fsaverage/surf/rh.white

No such file or directory

>$ more error.log

Could not set locale

MRISread(): could not open file

Thank you in advance
--

/**********************************************************\
Francisco Javier Navas Sánchez
Laboratorio de Imagen Médica U.M.C.E.
Hospital General Universitario Gregorio Marañón
Dr Esquerdo 46, 28007 Madrid, Spain
Phone : (+34) 91 426 50 67   Fax: (+34) 91 426 5108
e-mail:jnavas@hggm.es   http://image.hggm.es
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