Thu Dec 10 19:18:50 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post /cdrom/Marco/freesurfer/bin/recon-all -i /home/marco/scripts/pipelineT1/T40_OM_Post.nii -sd /home/marco/scripts/pipelineT1/subjects -subjid T40_OM_Post -all subjid T40_OM_Post setenv SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Actual FREESURFER_HOME /cdrom/Marco/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 Linux ubuntu 3.19.0-25-generic #26~14.04.1-Ubuntu SMP Fri Jul 24 21:16:20 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 63626 maxlocks unlimited maxsignal 63626 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 16311732 9271712 7040020 763756 1527004 5249732 -/+ buffers/cache: 2494976 13816756 Swap: 0 0 0 ######################################## program versions used $Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 nicks Exp $ $Id: mri_motion_correct.fsl,v 1.14 2011/03/02 20:16:39 nicks Exp $ mri_convert -all-info ProgramName: mri_convert ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:50-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 5.5 $Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks Exp $ mri_convert --version stable5 ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:50-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 Program nu_correct, built from: Package MNI N3, version 1.10, compiled by nicks@minerva (x86_64-unknown-linux-gnu) on 2010-02-20 at 17:32:37 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:50-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:50-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_normalize.c,v 1.73.2.1 2012/10/17 19:11:32 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:51-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_watershed.cpp,v 1.96.2.1 2011/11/08 22:18:44 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:51-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:51-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_segment.c,v 1.40 2011/03/02 00:04:24 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_label2label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:51-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_label2label.c,v 1.40.2.2 2013/04/02 16:26:15 greve Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ======= NUMBER OF OPENMP THREADS = 1 ======= ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:51-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_em_register.c,v 1.84.2.3 2013/02/09 00:49:26 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:51-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_ca_normalize.c,v 1.52.2.2 2012/10/17 19:11:32 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:51-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_ca_register.c,v 1.78.2.3 2013/02/09 00:42:20 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:51-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_ca_label.c,v 1.96.2.1 2012/08/28 22:11:20 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:51-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_pretess.c,v 1.20 2011/03/02 00:04:23 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:51-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_fill.c,v 1.118 2011/03/16 21:23:49 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:51-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_concatenate_lta ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:51-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_concatenate_lta.c,v 1.10 2011/03/16 21:23:48 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:51-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:51-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_smooth.c,v 1.28 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:51-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_inflate.c,v 1.43 2011/03/02 00:04:32 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:51-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:51-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:51-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:52-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:52-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:52-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_euler_number.c,v 1.8.2.2 2013/01/14 22:40:07 greve Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:52-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:52-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:52-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_volmask.cpp,v 1.25 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:52-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_anatomical_stats.c,v 1.72 2011/03/02 00:04:26 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:52-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mrisp_paint.c,v 1.11 2011/03/02 00:04:35 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:52-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_curvature_stats.c,v 1.64 2011/03/02 00:04:30 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:52-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_calc.c,v 1.37.2.8 2013/01/28 17:05:17 greve Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ ProgramName: mri_robust_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:52-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:52-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:52-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:52-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_or.c,v 1.3 2011/03/02 00:04:13 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:52-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/10-19:18:52-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ User: marco Machine: ubuntu Platform: Linux PlatformVersion: 3.19.0-25-generic CompilerName: GCC CompilerVersion: 40400 ####################################### GCADIR /cdrom/Marco/freesurfer/average GCA RB_all_2008-03-26.gca GCASkull RB_all_withskull_2008-03-26.gca AvgCurvTif average.curvature.filled.buckner40.tif GCSDIR /cdrom/Marco/freesurfer/average GCS curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ####################################### /home/marco/scripts/pipelineT1/subjects/T40_OM_Post mri_convert /home/marco/scripts/pipelineT1/T40_OM_Post.nii /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/orig/001.mgz mri_convert /home/marco/scripts/pipelineT1/T40_OM_Post.nii /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/orig/001.mgz INFO: using NIfTI-1 qform $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/marco/scripts/pipelineT1/T40_OM_Post.nii... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.998841, -0.0273623, 0.0396016) j_ras = (0.0273442, -0.999626, -0.00100089) k_ras = (0.0396142, 8.31458e-05, 0.999215) writing to /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/orig/001.mgz... #-------------------------------------------- #@# MotionCor Thu Dec 10 19:18:58 UTC 2015 Found 1 runs /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... WARNING: only one run found. This is OK, but motion correction cannot be performed on one run, so I'll copy the run to rawavg and continue. cp /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/orig/001.mgz /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/rawavg.mgz /home/marco/scripts/pipelineT1/subjects/T40_OM_Post mri_convert /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/rawavg.mgz /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/orig.mgz --conform mri_convert /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/rawavg.mgz /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/orig.mgz --conform $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/rawavg.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.998841, -0.0273623, 0.0396016) j_ras = (0.0273442, -0.999626, -0.00100089) k_ras = (0.0396142, 8.31458e-05, 0.999215) Original Data has (1.09375, 1.09375, 0.499969) mm size and (256, 256, 330) voxels. Data is conformed to 1 mm size and 256 voxels for all directions changing data type from float to uchar (noscale = 0)... MRIchangeType: Building histogram Reslicing using trilinear interpolation writing to /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/orig.mgz... mri_add_xform_to_header -c /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/transforms/talairach.xfm /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/orig.mgz /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/orig.mgz INFO: extension is mgz #-------------------------------------------- #@# Talairach Thu Dec 10 19:19:11 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm cp transforms/talairach.auto.xfm transforms/talairach.xfm #-------------------------------------------- #@# Talairach Failure Detection Thu Dec 10 19:20:02 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.7229, pval=0.4932 >= threshold=0.0050) awk -f /cdrom/Marco/freesurfer/bin/extract_talairach_avi_QA.awk /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/transforms/talairach_avi.log tal_QC_AZS /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/transforms/talairach_avi.log TalAviQA: 0.97791 z-score: 0 #-------------------------------------------- #@# Nu Intensity Correction Thu Dec 10 19:20:02 UTC 2015 mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri /cdrom/Marco/freesurfer/bin/mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 nIters 2 $Id: mri_nu_correct.mni,v 1.18.2.1 2013/01/09 21:23:42 nicks Exp $ Linux ubuntu 3.19.0-25-generic #26~14.04.1-Ubuntu SMP Fri Jul 24 21:16:20 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux Thu Dec 10 19:20:02 UTC 2015 Program nu_correct, built from: Package MNI N3, version 1.10, compiled by nicks@minerva (x86_64-unknown-linux-gnu) on 2010-02-20 at 17:32:37 tmpdir is ./tmp.mri_nu_correct.mni.19299 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri mri_convert orig.mgz ./tmp.mri_nu_correct.mni.19299/nu0.mnc -odt float mri_convert orig.mgz ./tmp.mri_nu_correct.mni.19299/nu0.mnc -odt float $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from orig.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, -5.94355e-10, 3.72529e-09) j_ras = (7.45058e-09, 1.01863e-10, -1) k_ras = (4.32738e-09, 1, -1.30967e-10) changing data type from uchar to float (noscale = 0)... writing to ./tmp.mri_nu_correct.mni.19299/nu0.mnc... -------------------------------------------------------- Iteration 1 Thu Dec 10 19:20:04 UTC 2015 nu_correct -clobber ./tmp.mri_nu_correct.mni.19299/nu0.mnc ./tmp.mri_nu_correct.mni.19299/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.19299/0/ defined(@array) is deprecated at /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em line 165. (Maybe you should just omit the defined()?) defined(@array) is deprecated at /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em line 170. (Maybe you should just omit the defined()?) defined(@array) is deprecated at /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em line 211. (Maybe you should just omit the defined()?) defined(@array) is deprecated at /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em line 1051. (Maybe you should just omit the defined()?) defined(@array) is deprecated at /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em line 1054. (Maybe you should just omit the defined()?) defined(@array) is deprecated at /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em line 1449. (Maybe you should just omit the defined()?) defined(@array) is deprecated at /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em line 1455. (Maybe you should just omit the defined()?) defined(@array) is deprecated at /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em line 1457. (Maybe you should just omit the defined()?) defined(@array) is deprecated at /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em line 1481. (Maybe you should just omit the defined()?) defined(@array) is deprecated at /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em line 1631. (Maybe you should just omit the defined()?) defined(@array) is deprecated at /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em line 1633. (Maybe you should just omit the defined()?) defined(@array) is deprecated at /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em line 1635. (Maybe you should just omit the defined()?) defined(@array) is deprecated at /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em line 1637. (Maybe you should just omit the defined()?) defined(@array) is deprecated at /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em line 1639. (Maybe you should just omit the defined()?) [marco@ubuntu:/home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/] [2015-12-10 19:20:04] running: /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.19299/0/ ./tmp.mri_nu_correct.mni.19299/nu0.mnc ./tmp.mri_nu_correct.mni.19299/nu1.imp Use of ?PATTERN? without explicit operator is deprecated at /cdrom/Marco/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /cdrom/Marco/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /cdrom/Marco/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /cdrom/Marco/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /cdrom/Marco/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /cdrom/Marco/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /cdrom/Marco/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /cdrom/Marco/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Number of iterations: 8 CV of field change: 0.000930444 [marco@ubuntu:/home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/] [2015-12-10 19:20:07] running: /cdrom/Marco/freesurfer/mni/bin/make_template -quiet -shrink 3 ./tmp.mri_nu_correct.mni.19299/nu0.mnc ./tmp.mri_nu_correct.mni.19299/0//template.mnc Transforming slices:......................................................................................Done Transforming slices:................................................................................................................................................................................................................................................................Done -------------------------------------------------------- Iteration 2 Thu Dec 10 19:20:09 UTC 2015 nu_correct -clobber ./tmp.mri_nu_correct.mni.19299/nu1.mnc ./tmp.mri_nu_correct.mni.19299/nu2.mnc -tmpdir ./tmp.mri_nu_correct.mni.19299/1/ defined(@array) is deprecated at /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em line 165. (Maybe you should just omit the defined()?) defined(@array) is deprecated at /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em line 170. (Maybe you should just omit the defined()?) defined(@array) is deprecated at /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em line 211. (Maybe you should just omit the defined()?) defined(@array) is deprecated at /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em line 1051. (Maybe you should just omit the defined()?) defined(@array) is deprecated at /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em line 1054. (Maybe you should just omit the defined()?) defined(@array) is deprecated at /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em line 1449. (Maybe you should just omit the defined()?) defined(@array) is deprecated at /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em line 1455. (Maybe you should just omit the defined()?) defined(@array) is deprecated at /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em line 1457. (Maybe you should just omit the defined()?) defined(@array) is deprecated at /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em line 1481. (Maybe you should just omit the defined()?) defined(@array) is deprecated at /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em line 1631. (Maybe you should just omit the defined()?) defined(@array) is deprecated at /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em line 1633. (Maybe you should just omit the defined()?) defined(@array) is deprecated at /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em line 1635. (Maybe you should just omit the defined()?) defined(@array) is deprecated at /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em line 1637. (Maybe you should just omit the defined()?) defined(@array) is deprecated at /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em line 1639. (Maybe you should just omit the defined()?) [marco@ubuntu:/home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/] [2015-12-10 19:20:09] running: /cdrom/Marco/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.19299/1/ ./tmp.mri_nu_correct.mni.19299/nu1.mnc ./tmp.mri_nu_correct.mni.19299/nu2.imp Use of ?PATTERN? without explicit operator is deprecated at /cdrom/Marco/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /cdrom/Marco/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /cdrom/Marco/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /cdrom/Marco/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /cdrom/Marco/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Number of iterations: 5 CV of field change: 0.000851756 [marco@ubuntu:/home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/] [2015-12-10 19:20:11] running: /cdrom/Marco/freesurfer/mni/bin/make_template -quiet -shrink 3 ./tmp.mri_nu_correct.mni.19299/nu1.mnc ./tmp.mri_nu_correct.mni.19299/1//template.mnc Transforming slices:......................................................................................Done Transforming slices:................................................................................................................................................................................................................................................................Done mri_binarize --i ./tmp.mri_nu_correct.mni.19299/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.19299/ones.mgz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri cmdline mri_binarize --i ./tmp.mri_nu_correct.mni.19299/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.19299/ones.mgz sysname Linux hostname ubuntu machine x86_64 user marco input ./tmp.mri_nu_correct.mni.19299/nu2.mnc frame 0 nErode3d 0 nErode2d 0 output ./tmp.mri_nu_correct.mni.19299/ones.mgz Binarizing based on threshold min -1 max +infinity binval 1 binvalnot 0 Found 16777216 values in range Counting number of voxels Found 16777216 voxels in final mask mri_binarize done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.19299/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.19299/sum.junk --avgwf ./tmp.mri_nu_correct.mni.19299/input.mean.dat $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.19299/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.19299/sum.junk --avgwf ./tmp.mri_nu_correct.mni.19299/input.mean.dat sysname Linux hostname ubuntu machine x86_64 user marco UseRobust 0 Loading ./tmp.mri_nu_correct.mni.19299/ones.mgz Loading orig.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation 0 1 16777216 16777216.000 Reporting on 1 segmentations Computing spatial average of each frame 0 Writing to ./tmp.mri_nu_correct.mni.19299/input.mean.dat mri_segstats done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.19299/ones.mgz --i ./tmp.mri_nu_correct.mni.19299/nu2.mnc --sum ./tmp.mri_nu_correct.mni.19299/sum.junk --avgwf ./tmp.mri_nu_correct.mni.19299/output.mean.dat $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.19299/ones.mgz --i ./tmp.mri_nu_correct.mni.19299/nu2.mnc --sum ./tmp.mri_nu_correct.mni.19299/sum.junk --avgwf ./tmp.mri_nu_correct.mni.19299/output.mean.dat sysname Linux hostname ubuntu machine x86_64 user marco UseRobust 0 Loading ./tmp.mri_nu_correct.mni.19299/ones.mgz Loading ./tmp.mri_nu_correct.mni.19299/nu2.mnc Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation 0 1 16777216 16777216.000 Reporting on 1 segmentations Computing spatial average of each frame 0 Writing to ./tmp.mri_nu_correct.mni.19299/output.mean.dat mri_segstats done mris_calc -o ./tmp.mri_nu_correct.mni.19299/nu2.mnc ./tmp.mri_nu_correct.mni.19299/nu2.mnc mul .98842149238567595694 Saving result to './tmp.mri_nu_correct.mni.19299/nu2.mnc' (type = MINC ) [ ok ] mri_convert ./tmp.mri_nu_correct.mni.19299/nu2.mnc nu.mgz --like orig.mgz mri_convert ./tmp.mri_nu_correct.mni.19299/nu2.mnc nu.mgz --like orig.mgz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from ./tmp.mri_nu_correct.mni.19299/nu2.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, -5.94355e-10, 3.72529e-09) j_ras = (7.45058e-09, 1.01863e-10, -1) k_ras = (4.32738e-09, 1, -1.30967e-10) INFO: transform src into the like-volume: orig.mgz writing to nu.mgz... mri_make_uchar nu.mgz transforms/talairach.xfm nu.mgz type change took 0 minutes and 7 seconds. mapping (10, 100) to ( 3, 110) Thu Dec 10 19:20:41 UTC 2015 mri_nu_correct.mni done mri_add_xform_to_header -c /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/transforms/talairach.xfm nu.mgz nu.mgz INFO: extension is mgz #-------------------------------------------- #@# Intensity Normalization Thu Dec 10 19:20:42 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri mri_normalize -g 1 nu.mgz T1.mgz using max gradient = 1.000 reading from nu.mgz... normalizing image... talairach transform 1.117 0.061 -0.078 0.669; -0.061 1.071 0.303 -11.931; 0.066 -0.314 1.065 -13.319; 0.000 0.000 0.000 1.000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 17 Starting OpenSpline(): npoints = 17 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 111 white matter peak found at 109 gm peak at 86 (86), valley at 58 (58) csf peak at 29, setting threshold to 67 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 111 white matter peak found at 109 gm peak at 84 (84), valley at 58 (58) csf peak at 28, setting threshold to 65 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to T1.mgz 3D bias adjustment took 1 minutes and 29 seconds. #-------------------------------------------- #@# Skull Stripping Thu Dec 10 19:22:12 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri mri_em_register -skull nu.mgz /cdrom/Marco/freesurfer/average/RB_all_withskull_2008-03-26.gca transforms/talairach_with_skull.lta ======= NUMBER OF OPENMP THREADS = 1 ======= aligning to atlas containing skull, setting unknown_nbr_spacing = 5 reading 1 input volumes... logging results to talairach_with_skull.log reading '/cdrom/Marco/freesurfer/average/RB_all_withskull_2008-03-26.gca'... average std = 23.1 using min determinant for regularization = 53.4 0 singular and 5702 ill-conditioned covariance matrices regularized reading 'nu.mgz'... freeing gibbs priors...done. bounding unknown intensity as < 20.2 or > 943.7 total sample mean = 92.0 (1443 zeros) ************************************************ spacing=8, using 3481 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 3481, passno 0, spacing 8 resetting wm mean[0]: 117 --> 126 resetting gm mean[0]: 74 --> 74 input volume #1 is the most T1-like using real data threshold=11.0 skull bounding box = (47, 52, 20) --> (205, 213, 214) using (100, 106, 117) as brain centroid... mean wm in atlas = 126, using box (81,86,93) --> (119, 125,140) to find MRI wm before smoothing, mri peak at 109 after smoothing, mri peak at 108, scaling input intensities by 1.167 scaling channel 0 by 1.16667 initial log_p = -4.8 ************************************************ First Search limited to translation only. ************************************************ max log p = -4.730731 @ (9.091, -9.091, -9.091) max log p = -4.709000 @ (-4.545, -13.636, 4.545) max log p = -4.665914 @ (-2.273, 11.364, -2.273) max log p = -4.662884 @ (-5.682, -3.409, 7.955) max log p = -4.651697 @ (1.705, -2.841, -6.250) max log p = -4.651697 @ (0.000, 0.000, 0.000) Found translation: (-1.7, -17.6, -5.1): log p = -4.652 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-4.3, old_max_log_p =-4.7 (thresh=-4.6) 1.130 -0.106 -0.183 16.739; 0.160 1.189 0.297 -89.773; 0.139 -0.273 1.019 12.975; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 1 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-4.3, old_max_log_p =-4.3 (thresh=-4.3) 1.051 -0.149 -0.050 17.962; 0.190 1.229 0.459 -116.708; -0.034 -0.439 1.061 52.334; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 2 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-4.3, old_max_log_p =-4.3 (thresh=-4.3) 1.147 0.020 -0.009 -21.232; 0.050 1.188 0.297 -75.680; -0.008 -0.254 1.028 28.074; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 3 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-4.3, old_max_log_p =-4.3 (thresh=-4.3) 1.147 0.020 -0.009 -21.232; 0.050 1.188 0.297 -75.680; -0.008 -0.254 1.028 28.074; 0.000 0.000 0.000 1.000; reducing scale to 0.2500 **************************************** Nine parameter search. iteration 4 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.3 (thresh=-4.3) 1.115 -0.032 -0.128 6.300; 0.129 1.233 0.302 -92.230; 0.108 -0.268 1.080 13.361; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 5 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.097 -0.041 -0.091 3.978; 0.133 1.223 0.337 -95.148; 0.066 -0.301 1.053 24.002; 0.000 0.000 0.000 1.000; reducing scale to 0.0625 **************************************** Nine parameter search. iteration 6 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.094 -0.066 -0.079 5.330; 0.151 1.222 0.336 -96.645; 0.048 -0.300 1.053 25.202; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 7 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.094 -0.066 -0.079 5.330; 0.151 1.224 0.336 -96.900; 0.048 -0.300 1.055 25.108; 0.000 0.000 0.000 1.000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 3481 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.09440 -0.06572 -0.07881 5.33019; 0.15073 1.22383 0.33635 -96.89990; 0.04803 -0.30041 1.05451 25.10760; 0.00000 0.00000 0.00000 1.00000; nsamples 3481 Quasinewton: input matrix 1.09440 -0.06572 -0.07881 5.33019; 0.15073 1.22383 0.33635 -96.89990; 0.04803 -0.30041 1.05451 25.10760; 0.00000 0.00000 0.00000 1.00000; IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 3 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 010: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.094 -0.066 -0.079 5.330; 0.151 1.224 0.336 -96.900; 0.048 -0.300 1.055 25.108; 0.000 0.000 0.000 1.000; pass 1, spacing 8: log(p) = -4.2 (old=-4.8) transform before final EM align: 1.094 -0.066 -0.079 5.330; 0.151 1.224 0.336 -96.900; 0.048 -0.300 1.055 25.108; 0.000 0.000 0.000 1.000; ************************************************** EM alignment process ... Computing final MAP estimate using 382743 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.09440 -0.06572 -0.07881 5.33019; 0.15073 1.22383 0.33635 -96.89990; 0.04803 -0.30041 1.05451 25.10760; 0.00000 0.00000 0.00000 1.00000; nsamples 382743 Quasinewton: input matrix 1.09440 -0.06572 -0.07881 5.33019; 0.15073 1.22383 0.33635 -96.89990; 0.04803 -0.30041 1.05451 25.10760; 0.00000 0.00000 0.00000 1.00000; IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 6 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 012: -log(p) = 4.5 tol 0.000000 final transform: 1.094 -0.066 -0.079 5.330; 0.151 1.224 0.336 -96.900; 0.048 -0.300 1.055 25.108; 0.000 0.000 0.000 1.000; writing output transformation to transforms/talairach_with_skull.lta... registration took 27 minutes and 24 seconds. mri_watershed -T1 -brain_atlas /cdrom/Marco/freesurfer/average/RB_all_withskull_2008-03-26.gca transforms/talairach_with_skull.lta T1.mgz brainmask.auto.mgz Mode: T1 normalized volume Mode: Use the information of atlas (default parms, --help for details) ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz Weighting the input with atlas information before watershed *************************WATERSHED************************** Sorting... first estimation of the COG coord: x=124 y=122 z=111 r=76 first estimation of the main basin volume: 1842008 voxels Looking for seedpoints 2 found in the cerebellum 15 found in the rest of the brain global maximum in x=144, y=118, z=79, Imax=255 CSF=21, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 10 percent done. Analyze... main basin size=19439371336 voxels, voxel volume =1.000 = 19439371336 mmm3 = 19439372.288 cm3 done. PostAnalyze...Basin Prior 25 basins merged thanks to atlas ***** 0 basin(s) merged in 1 iteration(s) ***** 0 voxel(s) added to the main basin done. Weighting the input with prior template ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=125,y=131, z=108, r=9161 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^ GLOBAL CSF_MIN=1, CSF_intensity=2, CSF_MAX=13 , nb = 44649 RIGHT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=14 , nb = -1035655640 LEFT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=5 , nb = -1052748531 RIGHT_BRAIN CSF_MIN=1, CSF_intensity=2, CSF_MAX=19 , nb = 1074129415 LEFT_BRAIN CSF_MIN=1, CSF_intensity=2, CSF_MAX=10 , nb = 1080267388 OTHER CSF_MIN=0, CSF_intensity=2, CSF_MAX=4 , nb = 1065784134 CSF_MAX TRANSITION GM_MIN GM GLOBAL before analyzing : 13, 25, 55, 82 after analyzing : 13, 45, 55, 54 RIGHT_CER before analyzing : 14, 30, 60, 81 after analyzing : 14, 50, 60, 57 LEFT_CER before analyzing : 5, 11, 60, 84 after analyzing : 5, 43, 60, 53 RIGHT_BRAIN before analyzing : 19, 30, 52, 82 after analyzing : 19, 44, 52, 53 LEFT_BRAIN before analyzing : 10, 18, 52, 83 after analyzing : 10, 40, 52, 50 OTHER before analyzing : 4, 15, 83, 95 after analyzing : 4, 60, 83, 68 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...70 iterations *********************VALIDATION********************* curvature mean = -0.013, std = 0.010 curvature mean = 68.157, std = 6.593 No Rigid alignment: -atlas Mode Off (basic atlas / no registration) before rotation: sse = 2.42, sigma = 4.02 after rotation: sse = 2.42, sigma = 4.02 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 2.44, its var is 3.26 before Erosion-Dilatation 0.11% of inacurate vertices after Erosion-Dilatation 0.00% of inacurate vertices Validation of the shape of the surface done. Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation...39 iterations mri_strip_skull: done peeling brain Brain Size = 1540042 voxels, voxel volume = 1.000 mm3 = 1540042 mmm3 = 1540.042 cm3 ****************************** Saving brainmask.auto.mgz done cp brainmask.auto.mgz brainmask.mgz #------------------------------------- #@# EM Registration Thu Dec 10 19:49:54 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri mri_em_register -uns 3 -mask brainmask.mgz nu.mgz /cdrom/Marco/freesurfer/average/RB_all_2008-03-26.gca transforms/talairach.lta ======= NUMBER OF OPENMP THREADS = 1 ======= aligning to atlas containing skull, setting unknown_nbr_spacing = 3 using MR volume brainmask.mgz to mask input volume... reading 1 input volumes... logging results to talairach.log reading '/cdrom/Marco/freesurfer/average/RB_all_2008-03-26.gca'... average std = 6.9 using min determinant for regularization = 4.7 0 singular and 1812 ill-conditioned covariance matrices regularized reading 'nu.mgz'... freeing gibbs priors...done. bounding unknown intensity as < 14.9 or > 790.2 total sample mean = 84.4 (994 zeros) ************************************************ spacing=8, using 2772 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 2772, passno 0, spacing 8 resetting wm mean[0]: 102 --> 107 resetting gm mean[0]: 64 --> 64 input volume #1 is the most T1-like using real data threshold=18.9 skull bounding box = (61, 72, 38) --> (191, 202, 195) using (104, 115, 117) as brain centroid... mean wm in atlas = 107, using box (88,99,98) --> (119, 130,136) to find MRI wm before smoothing, mri peak at 109 after smoothing, mri peak at 109, scaling input intensities by 0.982 scaling channel 0 by 0.981651 initial log_p = -4.3 ************************************************ First Search limited to translation only. ************************************************ max log p = -4.102271 @ (-9.091, -9.091, -9.091) max log p = -3.895792 @ (4.545, -4.545, 4.545) max log p = -3.812994 @ (2.273, -2.273, -2.273) max log p = -3.798023 @ (1.136, 1.136, -3.409) max log p = -3.787695 @ (0.568, 0.568, 0.568) max log p = -3.787695 @ (0.000, 0.000, 0.000) Found translation: (-0.6, -14.2, -9.7): log p = -3.788 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.5, old_max_log_p =-3.8 (thresh=-3.8) 1.064 0.000 0.000 -8.688; 0.000 1.038 0.278 -51.303; 0.000 -0.278 1.038 30.453; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 1 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.5, old_max_log_p =-3.5 (thresh=-3.5) 1.064 0.000 0.000 -8.688; 0.000 1.038 0.278 -51.303; 0.000 -0.278 1.038 30.453; 0.000 0.000 0.000 1.000; reducing scale to 0.2500 **************************************** Nine parameter search. iteration 2 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.4, old_max_log_p =-3.5 (thresh=-3.5) 1.058 -0.092 -0.061 10.948; 0.104 1.024 0.308 -65.952; 0.033 -0.309 1.007 33.804; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.4, old_max_log_p =-3.4 (thresh=-3.4) 1.061 -0.058 -0.051 4.963; 0.070 1.027 0.310 -62.063; 0.034 -0.315 1.026 32.463; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 4 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.4, old_max_log_p =-3.4 (thresh=-3.4) 1.061 -0.058 -0.051 4.963; 0.070 1.027 0.310 -62.063; 0.034 -0.321 1.045 31.097; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 5 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.4, old_max_log_p =-3.4 (thresh=-3.4) 1.061 -0.058 -0.051 4.963; 0.070 1.027 0.310 -62.063; 0.034 -0.321 1.045 31.097; 0.000 0.000 0.000 1.000; reducing scale to 0.0625 **************************************** Nine parameter search. iteration 6 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.4, old_max_log_p =-3.4 (thresh=-3.4) 1.061 -0.055 -0.031 2.445; 0.061 1.027 0.320 -62.078; 0.016 -0.328 1.042 34.196; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 7 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.4, old_max_log_p =-3.4 (thresh=-3.4) 1.062 -0.055 -0.031 2.299; 0.061 1.026 0.310 -60.856; 0.017 -0.319 1.044 32.803; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 8 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.4, old_max_log_p =-3.4 (thresh=-3.4) 1.062 -0.055 -0.031 2.299; 0.061 1.026 0.310 -60.856; 0.017 -0.319 1.044 32.803; 0.000 0.000 0.000 1.000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 2772 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.06192 -0.05498 -0.03084 2.29878; 0.06096 1.02609 0.31009 -60.85619; 0.01688 -0.31926 1.04359 32.80306; 0.00000 0.00000 0.00000 1.00000; nsamples 2772 Quasinewton: input matrix 1.06192 -0.05498 -0.03084 2.29878; 0.06096 1.02609 0.31009 -60.85619; 0.01688 -0.31926 1.04359 32.80306; 0.00000 0.00000 0.00000 1.00000; IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 3 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 011: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.062 -0.055 -0.031 2.299; 0.061 1.026 0.310 -60.856; 0.017 -0.319 1.044 32.803; 0.000 0.000 0.000 1.000; pass 1, spacing 8: log(p) = -3.4 (old=-4.3) transform before final EM align: 1.062 -0.055 -0.031 2.299; 0.061 1.026 0.310 -60.856; 0.017 -0.319 1.044 32.803; 0.000 0.000 0.000 1.000; ************************************************** EM alignment process ... Computing final MAP estimate using 312841 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.06192 -0.05498 -0.03084 2.29878; 0.06096 1.02609 0.31009 -60.85619; 0.01688 -0.31926 1.04359 32.80306; 0.00000 0.00000 0.00000 1.00000; nsamples 312841 Quasinewton: input matrix 1.06192 -0.05498 -0.03084 2.29878; 0.06096 1.02609 0.31009 -60.85619; 0.01688 -0.31926 1.04359 32.80306; 0.00000 0.00000 0.00000 1.00000; dfp_em_step_func: 012: -log(p) = 3.9 after pass:transform: ( 1.06, -0.05, -0.03, 2.30) ( 0.06, 1.03, 0.31, -60.86) ( 0.02, -0.32, 1.04, 32.80) dfp_em_step_func: 013: -log(p) = 3.9 after pass:transform: ( 1.06, -0.05, -0.03, 2.30) ( 0.06, 1.03, 0.31, -60.86) ( 0.02, -0.32, 1.04, 32.80) dfp_em_step_func: 014: -log(p) = 3.9 after pass:transform: ( 1.06, -0.05, -0.03, 2.30) ( 0.06, 1.03, 0.31, -60.86) ( 0.02, -0.32, 1.04, 32.80) dfp_em_step_func: 015: -log(p) = 3.9 after pass:transform: ( 1.06, -0.05, -0.03, 2.30) ( 0.06, 1.03, 0.31, -60.86) ( 0.02, -0.32, 1.04, 32.80) dfp_em_step_func: 016: -log(p) = 3.9 after pass:transform: ( 1.06, -0.05, -0.03, 2.30) ( 0.06, 1.03, 0.31, -60.86) ( 0.02, -0.32, 1.04, 32.80) dfp_em_step_func: 017: -log(p) = 3.9 after pass:transform: ( 1.06, -0.05, -0.03, 2.30) ( 0.06, 1.03, 0.31, -60.86) ( 0.02, -0.32, 1.04, 32.80) IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 3 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESpass 2 through quasi-newton minimization... IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 6 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 019: -log(p) = 3.9 tol 0.000000 final transform: 1.062 -0.055 -0.031 2.299; 0.061 1.026 0.310 -60.856; 0.017 -0.319 1.044 32.803; 0.000 0.000 0.000 1.000; writing output transformation to transforms/talairach.lta... registration took 24 minutes and 15 seconds. #-------------------------------------- #@# CA Normalize Thu Dec 10 20:14:09 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri mri_ca_normalize -c ctrl_pts.mgz -mask brainmask.mgz nu.mgz /cdrom/Marco/freesurfer/average/RB_all_2008-03-26.gca transforms/talairach.lta norm.mgz writing control point volume to ctrl_pts.mgz using MR volume brainmask.mgz to mask input volume... reading 1 input volume reading atlas from '/cdrom/Marco/freesurfer/average/RB_all_2008-03-26.gca'... reading transform from 'transforms/talairach.lta'... reading input volume from nu.mgz... resetting wm mean[0]: 102 --> 107 resetting gm mean[0]: 64 --> 64 input volume #1 is the most T1-like using real data threshold=18.9 skull bounding box = (61, 72, 38) --> (191, 202, 195) using (104, 115, 117) as brain centroid... mean wm in atlas = 107, using box (88,99,98) --> (119, 130,136) to find MRI wm before smoothing, mri peak at 109 after smoothing, mri peak at 109, scaling input intensities by 0.982 scaling channel 0 by 0.981651 using 244171 sample points... INFO: compute sample coordinates transform 1.062 -0.055 -0.031 2.299; 0.061 1.026 0.310 -60.856; 0.017 -0.319 1.044 32.803; 0.000 0.000 0.000 1.000; INFO: transform used finding control points in Left_Cerebral_White_Matter.... found 41584 control points for structure... bounding box (124, 73, 40) --> (189, 182, 189) Left_Cerebral_White_Matter: limiting intensities to 94.0 --> 250.0 0 of 394 (0.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 40735 control points for structure... bounding box (65, 74, 40) --> (128, 178, 191) Right_Cerebral_White_Matter: limiting intensities to 96.0 --> 250.0 0 of 399 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3012 control points for structure... bounding box (129, 156, 69) --> (176, 197, 117) Left_Cerebellum_White_Matter: limiting intensities to 92.0 --> 250.0 0 of 10 (0.0%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2764 control points for structure... bounding box (86, 157, 67) --> (128, 199, 119) Right_Cerebellum_White_Matter: limiting intensities to 93.0 --> 250.0 0 of 13 (0.0%) samples deleted finding control points in Brain_Stem.... found 3520 control points for structure... bounding box (113, 145, 98) --> (144, 210, 127) Brain_Stem: limiting intensities to 102.0 --> 250.0 1 of 2 (50.0%) samples deleted using 818 total control points for intensity normalization... bias field = 1.034 +- 0.052 5 of 817 control points discarded finding control points in Left_Cerebral_White_Matter.... found 41584 control points for structure... bounding box (124, 73, 40) --> (189, 182, 189) Left_Cerebral_White_Matter: limiting intensities to 95.0 --> 250.0 0 of 378 (0.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 40735 control points for structure... bounding box (65, 74, 40) --> (128, 178, 191) Right_Cerebral_White_Matter: limiting intensities to 96.0 --> 250.0 0 of 389 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3012 control points for structure... bounding box (129, 156, 69) --> (176, 197, 117) Left_Cerebellum_White_Matter: limiting intensities to 97.0 --> 250.0 14 of 35 (40.0%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2764 control points for structure... bounding box (86, 157, 67) --> (128, 199, 119) Right_Cerebellum_White_Matter: limiting intensities to 95.0 --> 250.0 6 of 27 (22.2%) samples deleted finding control points in Brain_Stem.... found 3520 control points for structure... bounding box (113, 145, 98) --> (144, 210, 127) Brain_Stem: limiting intensities to 81.0 --> 250.0 0 of 43 (0.0%) samples deleted using 872 total control points for intensity normalization... bias field = 1.015 +- 0.051 1 of 852 control points discarded finding control points in Left_Cerebral_White_Matter.... found 41584 control points for structure... bounding box (124, 73, 40) --> (189, 182, 189) Left_Cerebral_White_Matter: limiting intensities to 95.0 --> 249.0 0 of 415 (0.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 40735 control points for structure... bounding box (65, 74, 40) --> (128, 178, 191) Right_Cerebral_White_Matter: limiting intensities to 95.0 --> 249.0 0 of 441 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3012 control points for structure... bounding box (129, 156, 69) --> (176, 197, 117) Left_Cerebellum_White_Matter: limiting intensities to 80.0 --> 249.0 0 of 61 (0.0%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2764 control points for structure... bounding box (86, 157, 67) --> (128, 199, 119) Right_Cerebellum_White_Matter: limiting intensities to 80.0 --> 249.0 0 of 33 (0.0%) samples deleted finding control points in Brain_Stem.... found 3520 control points for structure... bounding box (113, 145, 98) --> (144, 210, 127) Brain_Stem: limiting intensities to 80.0 --> 249.0 0 of 88 (0.0%) samples deleted using 1038 total control points for intensity normalization... bias field = 1.016 +- 0.045 4 of 1038 control points discarded writing normalized volume to norm.mgz... writing control points to ctrl_pts.mgz freeing GCA...done. normalization took 1 minutes and 6 seconds. #-------------------------------------- #@# CA Reg Thu Dec 10 20:15:16 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri mri_ca_register -nobigventricles -T transforms/talairach.lta -align-after -mask brainmask.mgz norm.mgz /cdrom/Marco/freesurfer/average/RB_all_2008-03-26.gca transforms/talairach.m3z not handling expanded ventricles... using previously computed transform transforms/talairach.lta renormalizing sequences with structure alignment, equivalent to: -renormalize -regularize_mean 0.500 -regularize 0.500 using MR volume brainmask.mgz to mask input volume... reading 1 input volumes... logging results to talairach.log ======= NUMBER OF OPENMP THREADS = 1 ======= reading input volume 'norm.mgz'... reading GCA '/cdrom/Marco/freesurfer/average/RB_all_2008-03-26.gca'... label assignment complete, 0 changed (0.00%) det(m_affine) = 1.25 (predicted orig area = 6.4) label assignment complete, 0 changed (0.00%) freeing gibbs priors...done. average std[0] = 5.0 **************** pass 1 of 1 ************************ setting smoothness coefficient to 0.039 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.855, neg=0, invalid=96777 0001: dt=129.472000, rms=0.780 (8.789%), neg=0, invalid=96777 0002: dt=295.936000, rms=0.751 (3.720%), neg=0, invalid=96777 0003: dt=129.472000, rms=0.740 (1.419%), neg=0, invalid=96777 0004: dt=443.904000, rms=0.733 (0.864%), neg=0, invalid=96777 0005: dt=129.472000, rms=0.727 (0.872%), neg=0, invalid=96777 0006: dt=92.480000, rms=0.726 (0.117%), neg=0, invalid=96777 0007: dt=92.480000, rms=0.725 (0.140%), neg=0, invalid=96777 0008: dt=92.480000, rms=0.724 (0.222%), neg=0, invalid=96777 0009: dt=92.480000, rms=0.721 (0.350%), neg=0, invalid=96777 0010: dt=92.480000, rms=0.717 (0.551%), neg=0, invalid=96777 0011: dt=92.480000, rms=0.714 (0.498%), neg=0, invalid=96777 0012: dt=92.480000, rms=0.711 (0.380%), neg=0, invalid=96777 0013: dt=92.480000, rms=0.709 (0.262%), neg=0, invalid=96777 0014: dt=92.480000, rms=0.707 (0.289%), neg=0, invalid=96777 0015: dt=92.480000, rms=0.704 (0.355%), neg=0, invalid=96777 0016: dt=92.480000, rms=0.702 (0.396%), neg=0, invalid=96777 0017: dt=92.480000, rms=0.699 (0.361%), neg=0, invalid=96777 0018: dt=92.480000, rms=0.697 (0.301%), neg=0, invalid=96777 0019: dt=92.480000, rms=0.695 (0.240%), neg=0, invalid=96777 0020: dt=92.480000, rms=0.694 (0.228%), neg=0, invalid=96777 0021: dt=92.480000, rms=0.692 (0.260%), neg=0, invalid=96777 0022: dt=92.480000, rms=0.690 (0.304%), neg=0, invalid=96777 0023: dt=92.480000, rms=0.688 (0.244%), neg=0, invalid=96777 0024: dt=92.480000, rms=0.687 (0.180%), neg=0, invalid=96777 0025: dt=92.480000, rms=0.685 (0.202%), neg=0, invalid=96777 0026: dt=92.480000, rms=0.684 (0.192%), neg=0, invalid=96777 0027: dt=92.480000, rms=0.683 (0.236%), neg=0, invalid=96777 0028: dt=92.480000, rms=0.681 (0.214%), neg=0, invalid=96777 0029: dt=92.480000, rms=0.680 (0.176%), neg=0, invalid=96777 0030: dt=92.480000, rms=0.679 (0.106%), neg=0, invalid=96777 0031: dt=92.480000, rms=0.679 (0.082%), neg=0, invalid=96777 0032: dt=0.000903, rms=0.679 (-0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.679, neg=0, invalid=96777 0033: dt=129.472000, rms=0.678 (0.153%), neg=0, invalid=96777 0034: dt=369.920000, rms=0.676 (0.251%), neg=0, invalid=96777 0035: dt=23.120000, rms=0.676 (0.007%), neg=0, invalid=96777 0036: dt=23.120000, rms=0.676 (-0.001%), neg=0, invalid=96777 setting smoothness coefficient to 0.154 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.683, neg=0, invalid=96777 0037: dt=103.680000, rms=0.677 (0.814%), neg=0, invalid=96777 0038: dt=124.416000, rms=0.666 (1.588%), neg=0, invalid=96777 0039: dt=36.288000, rms=0.662 (0.722%), neg=0, invalid=96777 0040: dt=82.944000, rms=0.660 (0.226%), neg=0, invalid=96777 0041: dt=82.944000, rms=0.654 (0.926%), neg=0, invalid=96777 0042: dt=82.944000, rms=0.648 (0.860%), neg=0, invalid=96777 0043: dt=82.944000, rms=0.645 (0.559%), neg=0, invalid=96777 0044: dt=82.944000, rms=0.636 (1.307%), neg=0, invalid=96777 0045: dt=82.944000, rms=0.630 (1.039%), neg=0, invalid=96777 0046: dt=82.944000, rms=0.627 (0.512%), neg=0, invalid=96777 0047: dt=82.944000, rms=0.625 (0.241%), neg=0, invalid=96777 0048: dt=82.944000, rms=0.625 (-0.024%), neg=0, invalid=96777 0049: dt=82.944000, rms=0.622 (0.535%), neg=0, invalid=96777 0050: dt=20.736000, rms=0.621 (0.049%), neg=0, invalid=96777 0051: dt=20.736000, rms=0.621 (0.004%), neg=0, invalid=96777 0052: dt=20.736000, rms=0.621 (0.018%), neg=0, invalid=96777 0053: dt=20.736000, rms=0.621 (0.011%), neg=0, invalid=96777 0054: dt=20.736000, rms=0.621 (0.019%), neg=0, invalid=96777 0055: dt=20.736000, rms=0.621 (0.049%), neg=0, invalid=96777 0056: dt=20.736000, rms=0.620 (0.062%), neg=0, invalid=96777 0057: dt=20.736000, rms=0.620 (0.051%), neg=0, invalid=96777 0058: dt=25.920000, rms=0.620 (0.004%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.620, neg=0, invalid=96777 0059: dt=82.944000, rms=0.618 (0.329%), neg=0, invalid=96777 0060: dt=31.104000, rms=0.618 (0.040%), neg=0, invalid=96777 0061: dt=31.104000, rms=0.617 (0.039%), neg=0, invalid=96777 0062: dt=31.104000, rms=0.617 (0.057%), neg=0, invalid=96777 0063: dt=31.104000, rms=0.617 (0.078%), neg=0, invalid=96777 0064: dt=31.104000, rms=0.616 (0.091%), neg=0, invalid=96777 0065: dt=31.104000, rms=0.615 (0.107%), neg=0, invalid=96777 0066: dt=31.104000, rms=0.614 (0.144%), neg=0, invalid=96777 0067: dt=31.104000, rms=0.614 (0.125%), neg=0, invalid=96777 0068: dt=31.104000, rms=0.613 (0.097%), neg=0, invalid=96777 0069: dt=31.104000, rms=0.613 (0.084%), neg=0, invalid=96777 0070: dt=103.680000, rms=0.612 (0.056%), neg=0, invalid=96777 0071: dt=103.680000, rms=0.612 (0.105%), neg=0, invalid=96777 0072: dt=103.680000, rms=0.611 (0.109%), neg=0, invalid=96777 0073: dt=103.680000, rms=0.610 (0.139%), neg=0, invalid=96777 0074: dt=103.680000, rms=0.610 (-0.156%), neg=0, invalid=96777 0075: dt=9.072000, rms=0.610 (0.008%), neg=0, invalid=96777 0076: dt=36.288000, rms=0.610 (0.015%), neg=0, invalid=96777 0077: dt=82.944000, rms=0.610 (0.047%), neg=0, invalid=96777 0078: dt=31.104000, rms=0.609 (0.041%), neg=0, invalid=96777 setting smoothness coefficient to 0.588 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.631, neg=0, invalid=96777 0079: dt=0.000000, rms=0.631 (0.002%), neg=0, invalid=96777 0080: dt=0.000000, rms=0.631 (0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.631, neg=0, invalid=96777 0081: dt=0.000000, rms=0.631 (0.000%), neg=0, invalid=96777 setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.696, neg=0, invalid=96777 0082: dt=4.819277, rms=0.681 (2.166%), neg=0, invalid=96777 0083: dt=1.837838, rms=0.680 (0.064%), neg=0, invalid=96777 0084: dt=1.837838, rms=0.680 (-0.027%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.680, neg=0, invalid=96777 0085: dt=0.000000, rms=0.680 (0.000%), neg=0, invalid=96777 setting smoothness coefficient to 5.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.753, neg=0, invalid=96777 0086: dt=1.213220, rms=0.748 (0.699%), neg=0, invalid=96777 0087: dt=1.792000, rms=0.742 (0.803%), neg=0, invalid=96777 0088: dt=0.448000, rms=0.741 (0.047%), neg=0, invalid=96777 0089: dt=0.448000, rms=0.741 (0.030%), neg=0, invalid=96777 0090: dt=0.448000, rms=0.741 (0.017%), neg=0, invalid=96777 0091: dt=0.448000, rms=0.741 (-0.032%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.741, neg=0, invalid=96777 0092: dt=1.536000, rms=0.739 (0.225%), neg=0, invalid=96777 0093: dt=0.000000, rms=0.739 (-0.005%), neg=0, invalid=96777 resetting metric properties... setting smoothness coefficient to 10.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.687, neg=0, invalid=96777 0094: dt=0.151997, rms=0.679 (1.060%), neg=0, invalid=96777 0095: dt=0.000050, rms=0.679 (0.001%), neg=0, invalid=96777 0096: dt=0.000050, rms=0.679 (-0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.679, neg=0, invalid=96777 0097: dt=0.281934, rms=0.677 (0.360%), neg=0, invalid=96777 0098: dt=0.096000, rms=0.676 (0.178%), neg=0, invalid=96777 0099: dt=0.096000, rms=0.675 (0.049%), neg=0, invalid=96777 0100: dt=0.096000, rms=0.675 (0.080%), neg=0, invalid=96777 0101: dt=0.096000, rms=0.674 (0.128%), neg=0, invalid=96777 0102: dt=0.096000, rms=0.673 (0.152%), neg=0, invalid=96777 0103: dt=0.096000, rms=0.672 (0.154%), neg=0, invalid=96777 0104: dt=0.096000, rms=0.671 (0.132%), neg=0, invalid=96777 0105: dt=0.096000, rms=0.670 (0.113%), neg=0, invalid=96777 0106: dt=0.096000, rms=0.670 (0.103%), neg=0, invalid=96777 0107: dt=0.064000, rms=0.670 (0.003%), neg=0, invalid=96777 0108: dt=0.064000, rms=0.670 (-0.005%), neg=0, invalid=96777 renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.11725 (24) mri peak = 0.14184 (23) Left_Lateral_Ventricle (4): linear fit = 0.83 x + 0.0 (2269 voxels, overlap=0.523) Left_Lateral_Ventricle (4): linear fit = 0.83 x + 0.0 (2269 voxels, peak = 20), gca=20.0 gca peak = 0.14022 (22) mri peak = 0.11462 (25) Right_Lateral_Ventricle (43): linear fit = 1.01 x + 0.0 (1787 voxels, overlap=0.775) Right_Lateral_Ventricle (43): linear fit = 1.01 x + 0.0 (1787 voxels, peak = 22), gca=22.3 gca peak = 0.24234 (100) mri peak = 0.08069 (111) Right_Pallidum (52): linear fit = 1.07 x + 0.0 (377 voxels, overlap=0.828) Right_Pallidum (52): linear fit = 1.07 x + 0.0 (377 voxels, peak = 107), gca=106.5 gca peak = 0.19192 (97) mri peak = 0.07353 (108) Left_Pallidum (13): linear fit = 1.07 x + 0.0 (266 voxels, overlap=0.791) Left_Pallidum (13): linear fit = 1.07 x + 0.0 (266 voxels, peak = 103), gca=103.3 gca peak = 0.24007 (63) mri peak = 0.05952 (76) Right_Hippocampus (53): linear fit = 1.23 x + 0.0 (632 voxels, overlap=0.027) Right_Hippocampus (53): linear fit = 1.23 x + 0.0 (632 voxels, peak = 77), gca=77.2 gca peak = 0.29892 (64) mri peak = 0.08658 (81) Left_Hippocampus (17): linear fit = 1.23 x + 0.0 (666 voxels, overlap=0.047) Left_Hippocampus (17): linear fit = 1.23 x + 0.0 (666 voxels, peak = 78), gca=78.4 gca peak = 0.12541 (104) mri peak = 0.09849 (108) Right_Cerebral_White_Matter (41): linear fit = 1.03 x + 0.0 (72863 voxels, overlap=0.696) Right_Cerebral_White_Matter (41): linear fit = 1.03 x + 0.0 (72863 voxels, peak = 108), gca=107.6 gca peak = 0.13686 (104) mri peak = 0.10195 (107) Left_Cerebral_White_Matter (2): linear fit = 1.02 x + 0.0 (77534 voxels, overlap=0.772) Left_Cerebral_White_Matter (2): linear fit = 1.02 x + 0.0 (77534 voxels, peak = 107), gca=106.6 gca peak = 0.11691 (63) mri peak = 0.05380 (90) Left_Cerebral_Cortex (3): linear fit = 1.37 x + 0.0 (22519 voxels, overlap=0.000) Left_Cerebral_Cortex (3): linear fit = 1.37 x + 0.0 (22519 voxels, peak = 86), gca=86.0 gca peak = 0.13270 (63) mri peak = 0.05028 (84) Right_Cerebral_Cortex (42): linear fit = 1.36 x + 0.0 (27007 voxels, overlap=0.000) Right_Cerebral_Cortex (42): linear fit = 1.36 x + 0.0 (27007 voxels, peak = 85), gca=85.4 gca peak = 0.15182 (70) mri peak = 0.10825 (92) Right_Caudate (50): linear fit = 1.17 x + 0.0 (393 voxels, overlap=0.014) Right_Caudate (50): linear fit = 1.17 x + 0.0 (393 voxels, peak = 82), gca=82.2 gca peak = 0.14251 (76) mri peak = 0.11294 (91) Left_Caudate (11): linear fit = 1.18 x + 0.0 (817 voxels, overlap=0.172) Left_Caudate (11): linear fit = 1.18 x + 0.0 (817 voxels, peak = 90), gca=90.1 gca peak = 0.12116 (60) mri peak = 0.04930 (77) Left_Cerebellum_Cortex (8): linear fit = 1.29 x + 0.0 (15978 voxels, overlap=0.001) Left_Cerebellum_Cortex (8): linear fit = 1.29 x + 0.0 (15978 voxels, peak = 78), gca=77.7 gca peak = 0.12723 (61) mri peak = 0.04858 (78) Right_Cerebellum_Cortex (47): linear fit = 1.28 x + 0.0 (20062 voxels, overlap=0.001) Right_Cerebellum_Cortex (47): linear fit = 1.28 x + 0.0 (20062 voxels, peak = 78), gca=78.4 gca peak = 0.22684 (88) mri peak = 0.05577 (93) Left_Cerebellum_White_Matter (7): linear fit = 1.07 x + 0.0 (7208 voxels, overlap=0.770) Left_Cerebellum_White_Matter (7): linear fit = 1.07 x + 0.0 (7208 voxels, peak = 94), gca=93.7 gca peak = 0.21067 (87) mri peak = 0.04947 (93) Right_Cerebellum_White_Matter (46): linear fit = 1.08 x + 0.0 (6077 voxels, overlap=0.983) Right_Cerebellum_White_Matter (46): linear fit = 1.08 x + 0.0 (6077 voxels, peak = 94), gca=93.5 gca peak = 0.25455 (62) mri peak = 0.07907 (76) Left_Amygdala (18): linear fit = 1.22 x + 0.0 (219 voxels, overlap=0.510) Left_Amygdala (18): linear fit = 1.22 x + 0.0 (219 voxels, peak = 75), gca=75.3 gca peak = 0.39668 (62) mri peak = 0.07407 (72) Right_Amygdala (54): linear fit = 1.14 x + 0.0 (253 voxels, overlap=0.230) Right_Amygdala (54): linear fit = 1.14 x + 0.0 (253 voxels, peak = 71), gca=71.0 gca peak = 0.10129 (93) mri peak = 0.06869 (95) Left_Thalamus_Proper (10): linear fit = 1.03 x + 0.0 (5138 voxels, overlap=0.829) Left_Thalamus_Proper (10): linear fit = 1.03 x + 0.0 (5138 voxels, peak = 96), gca=96.3 gca peak = 0.12071 (89) mri peak = 0.06808 (94) Right_Thalamus_Proper (49): linear fit = 1.09 x + 0.0 (3363 voxels, overlap=0.666) Right_Thalamus_Proper (49): linear fit = 1.09 x + 0.0 (3363 voxels, peak = 97), gca=96.6 gca peak = 0.13716 (82) mri peak = 0.07685 (92) Left_Putamen (12): linear fit = 1.13 x + 0.0 (2167 voxels, overlap=0.335) Left_Putamen (12): linear fit = 1.13 x + 0.0 (2167 voxels, peak = 93), gca=93.1 gca peak = 0.15214 (84) mri peak = 0.06320 (93) Right_Putamen (51): linear fit = 1.15 x + 0.0 (2121 voxels, overlap=0.224) Right_Putamen (51): linear fit = 1.15 x + 0.0 (2121 voxels, peak = 97), gca=97.0 gca peak = 0.08983 (85) mri peak = 0.06809 (92) Brain_Stem (16): linear fit = 1.12 x + 0.0 (7614 voxels, overlap=0.386) Brain_Stem (16): linear fit = 1.12 x + 0.0 (7614 voxels, peak = 96), gca=95.6 gca peak = 0.11809 (92) mri peak = 0.11869 (105) Right_VentralDC (60): linear fit = 1.12 x + 0.0 (659 voxels, overlap=0.338) Right_VentralDC (60): linear fit = 1.12 x + 0.0 (659 voxels, peak = 104), gca=103.5 gca peak = 0.12914 (94) mri peak = 0.08964 (104) Left_VentralDC (28): linear fit = 1.09 x + 0.0 (787 voxels, overlap=0.330) Left_VentralDC (28): linear fit = 1.09 x + 0.0 (787 voxels, peak = 102), gca=102.0 gca peak = 0.21100 (36) mri peak = 1.00000 (28) gca peak = 0.13542 (27) uniform distribution in MR - rejecting arbitrary fit gca peak Unknown = 0.94427 ( 0) gca peak Left_Inf_Lat_Vent = 0.21802 (40) gca peak Third_Ventricle = 0.21100 (36) gca peak Fourth_Ventricle = 0.13542 (27) gca peak CSF = 0.17123 (45) gca peak Left_Accumbens_area = 0.25875 (69) gca peak Left_undetermined = 0.96240 (36) gca peak Left_vessel = 0.33262 (65) gca peak Left_choroid_plexus = 0.09846 (46) gca peak Right_Inf_Lat_Vent = 0.28113 (34) gca peak Right_Accumbens_area = 0.27120 (72) gca peak Right_vessel = 0.61915 (60) gca peak Right_choroid_plexus = 0.12775 (51) gca peak Fifth_Ventricle = 0.45329 (44) gca peak WM_hypointensities = 0.11729 (81) gca peak non_WM_hypointensities = 0.10912 (56) gca peak Optic_Chiasm = 0.33287 (75) label assignment complete, 0 changed (0.00%) not using caudate to estimate GM means estimating mean gm scale to be 1.25 x + 0.0 estimating mean wm scale to be 1.03 x + 0.0 estimating mean csf scale to be 0.92 x + 0.0 Right_Putamen too bright - rescaling by 0.994 (from 1.155) to 96.4 (was 97.0) Right_Pallidum too bright - rescaling by 0.976 (from 1.065) to 103.9 (was 106.5) saving intensity scales to talairach.label_intensities.txt **************** pass 1 of 1 ************************ setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.724, neg=0, invalid=96777 0109: dt=73.984000, rms=0.706 (2.495%), neg=0, invalid=96777 0110: dt=73.984000, rms=0.705 (0.229%), neg=0, invalid=96777 0111: dt=129.472000, rms=0.702 (0.308%), neg=0, invalid=96777 0112: dt=517.888000, rms=0.695 (1.024%), neg=0, invalid=96777 0113: dt=110.976000, rms=0.693 (0.292%), neg=0, invalid=96777 0114: dt=129.472000, rms=0.692 (0.151%), neg=0, invalid=96777 0115: dt=443.904000, rms=0.689 (0.489%), neg=0, invalid=96777 0116: dt=32.368000, rms=0.688 (0.152%), neg=0, invalid=96777 0117: dt=55.488000, rms=0.687 (0.059%), neg=0, invalid=96777 0118: dt=129.472000, rms=0.687 (0.061%), neg=0, invalid=96777 0119: dt=887.808000, rms=0.682 (0.668%), neg=0, invalid=96777 0120: dt=32.368000, rms=0.681 (0.194%), neg=0, invalid=96777 0121: dt=32.368000, rms=0.681 (0.060%), neg=0, invalid=96777 0122: dt=32.368000, rms=0.680 (0.019%), neg=0, invalid=96777 0123: dt=32.368000, rms=0.680 (0.012%), neg=0, invalid=96777 0124: dt=32.368000, rms=0.680 (0.012%), neg=0, invalid=96777 0125: dt=32.368000, rms=0.680 (0.026%), neg=0, invalid=96777 0126: dt=32.368000, rms=0.680 (0.052%), neg=0, invalid=96777 0127: dt=32.368000, rms=0.679 (0.095%), neg=0, invalid=96777 0128: dt=32.368000, rms=0.678 (0.121%), neg=0, invalid=96777 0129: dt=32.368000, rms=0.677 (0.140%), neg=0, invalid=96777 0130: dt=32.368000, rms=0.676 (0.138%), neg=0, invalid=96777 0131: dt=32.368000, rms=0.676 (0.129%), neg=0, invalid=96777 0132: dt=32.368000, rms=0.675 (0.108%), neg=0, invalid=96777 0133: dt=32.368000, rms=0.674 (0.094%), neg=0, invalid=96777 0134: dt=32.368000, rms=0.674 (0.080%), neg=0, invalid=96777 0135: dt=32.368000, rms=0.673 (0.092%), neg=0, invalid=96777 0136: dt=32.368000, rms=0.672 (0.129%), neg=0, invalid=96777 0137: dt=32.368000, rms=0.671 (0.139%), neg=0, invalid=96777 0138: dt=32.368000, rms=0.670 (0.132%), neg=0, invalid=96777 0139: dt=32.368000, rms=0.670 (0.116%), neg=0, invalid=96777 0140: dt=32.368000, rms=0.669 (0.103%), neg=0, invalid=96777 0141: dt=32.368000, rms=0.668 (0.089%), neg=0, invalid=96777 0142: dt=32.368000, rms=0.668 (0.081%), neg=0, invalid=96777 0143: dt=32.368000, rms=0.667 (0.089%), neg=0, invalid=96777 0144: dt=32.368000, rms=0.667 (0.096%), neg=0, invalid=96777 0145: dt=32.368000, rms=0.666 (0.106%), neg=0, invalid=96777 0146: dt=32.368000, rms=0.665 (0.107%), neg=0, invalid=96777 0147: dt=32.368000, rms=0.664 (0.098%), neg=0, invalid=96777 0148: dt=32.368000, rms=0.664 (0.088%), neg=0, invalid=96777 0149: dt=32.368000, rms=0.663 (0.083%), neg=0, invalid=96777 0150: dt=32.368000, rms=0.663 (0.078%), neg=0, invalid=96777 0151: dt=32.368000, rms=0.662 (0.072%), neg=0, invalid=96777 0152: dt=32.368000, rms=0.662 (0.080%), neg=0, invalid=96777 0153: dt=32.368000, rms=0.661 (0.085%), neg=0, invalid=96777 0154: dt=32.368000, rms=0.661 (0.090%), neg=0, invalid=96777 0155: dt=32.368000, rms=0.660 (0.075%), neg=0, invalid=96777 0156: dt=32.368000, rms=0.660 (0.075%), neg=0, invalid=96777 0157: dt=32.368000, rms=0.659 (0.070%), neg=0, invalid=96777 0158: dt=32.368000, rms=0.659 (0.070%), neg=0, invalid=96777 0159: dt=32.368000, rms=0.658 (0.069%), neg=0, invalid=96777 0160: dt=32.368000, rms=0.658 (0.064%), neg=0, invalid=96777 0161: dt=32.368000, rms=0.657 (0.067%), neg=0, invalid=96777 0162: dt=32.368000, rms=0.657 (0.072%), neg=0, invalid=96777 0163: dt=32.368000, rms=0.656 (0.071%), neg=0, invalid=96777 0164: dt=32.368000, rms=0.656 (0.068%), neg=0, invalid=96777 0165: dt=32.368000, rms=0.656 (0.062%), neg=0, invalid=96777 0166: dt=32.368000, rms=0.655 (0.058%), neg=0, invalid=96777 0167: dt=32.368000, rms=0.655 (0.055%), neg=0, invalid=96777 0168: dt=32.368000, rms=0.654 (0.057%), neg=0, invalid=96777 0169: dt=32.368000, rms=0.654 (0.060%), neg=0, invalid=96777 0170: dt=32.368000, rms=0.654 (0.057%), neg=0, invalid=96777 0171: dt=32.368000, rms=0.653 (0.053%), neg=0, invalid=96777 0172: dt=32.368000, rms=0.653 (0.049%), neg=0, invalid=96777 0173: dt=32.368000, rms=0.653 (0.053%), neg=0, invalid=96777 0174: dt=32.368000, rms=0.652 (0.055%), neg=0, invalid=96777 0175: dt=32.368000, rms=0.652 (0.057%), neg=0, invalid=96777 0176: dt=32.368000, rms=0.652 (0.050%), neg=0, invalid=96777 0177: dt=32.368000, rms=0.651 (0.047%), neg=0, invalid=96777 0178: dt=32.368000, rms=0.651 (0.049%), neg=0, invalid=96777 0179: dt=32.368000, rms=0.651 (0.048%), neg=0, invalid=96777 0180: dt=32.368000, rms=0.650 (0.048%), neg=0, invalid=96777 0181: dt=32.368000, rms=0.650 (0.047%), neg=0, invalid=96777 0182: dt=32.368000, rms=0.650 (0.044%), neg=0, invalid=96777 0183: dt=32.368000, rms=0.650 (0.045%), neg=0, invalid=96777 0184: dt=32.368000, rms=0.649 (0.047%), neg=0, invalid=96777 0185: dt=32.368000, rms=0.649 (0.048%), neg=0, invalid=96777 0186: dt=32.368000, rms=0.649 (0.043%), neg=0, invalid=96777 0187: dt=32.368000, rms=0.648 (0.035%), neg=0, invalid=96777 0188: dt=32.368000, rms=0.648 (0.035%), neg=0, invalid=96777 0189: dt=32.368000, rms=0.648 (0.029%), neg=0, invalid=96777 0190: dt=32.368000, rms=0.648 (0.036%), neg=0, invalid=96777 0191: dt=32.368000, rms=0.647 (0.042%), neg=0, invalid=96777 0192: dt=32.368000, rms=0.647 (0.044%), neg=0, invalid=96777 0193: dt=32.368000, rms=0.647 (0.042%), neg=0, invalid=96777 0194: dt=32.368000, rms=0.647 (0.036%), neg=0, invalid=96777 0195: dt=32.368000, rms=0.646 (0.031%), neg=0, invalid=96777 0196: dt=32.368000, rms=0.646 (0.033%), neg=0, invalid=96777 0197: dt=32.368000, rms=0.646 (0.035%), neg=0, invalid=96777 0198: dt=32.368000, rms=0.646 (0.042%), neg=0, invalid=96777 0199: dt=32.368000, rms=0.645 (0.043%), neg=0, invalid=96777 0200: dt=32.368000, rms=0.645 (0.036%), neg=0, invalid=96777 0201: dt=32.368000, rms=0.645 (0.034%), neg=0, invalid=96777 0202: dt=32.368000, rms=0.645 (0.030%), neg=0, invalid=96777 0203: dt=32.368000, rms=0.645 (0.031%), neg=0, invalid=96777 0204: dt=32.368000, rms=0.644 (0.029%), neg=0, invalid=96777 0205: dt=32.368000, rms=0.644 (0.028%), neg=0, invalid=96777 0206: dt=32.368000, rms=0.644 (0.029%), neg=0, invalid=96777 0207: dt=32.368000, rms=0.644 (0.029%), neg=0, invalid=96777 0208: dt=32.368000, rms=0.644 (0.027%), neg=0, invalid=96777 0209: dt=32.368000, rms=0.644 (0.027%), neg=0, invalid=96777 0210: dt=32.368000, rms=0.643 (0.029%), neg=0, invalid=96777 0211: dt=32.368000, rms=0.643 (0.032%), neg=0, invalid=96777 0212: dt=32.368000, rms=0.643 (0.029%), neg=0, invalid=96777 0213: dt=32.368000, rms=0.643 (0.027%), neg=0, invalid=96777 0214: dt=32.368000, rms=0.643 (0.027%), neg=0, invalid=96777 0215: dt=32.368000, rms=0.642 (0.026%), neg=0, invalid=96777 0216: dt=32.368000, rms=0.642 (0.024%), neg=0, invalid=96777 0217: dt=32.368000, rms=0.642 (0.025%), neg=0, invalid=96777 0218: dt=32.368000, rms=0.642 (0.026%), neg=0, invalid=96777 0219: dt=32.368000, rms=0.642 (0.026%), neg=0, invalid=96777 0220: dt=32.368000, rms=0.642 (0.026%), neg=0, invalid=96777 0221: dt=32.368000, rms=0.641 (0.025%), neg=0, invalid=96777 0222: dt=32.368000, rms=0.641 (0.023%), neg=0, invalid=96777 0223: dt=8286.208000, rms=0.639 (0.410%), neg=0, invalid=96777 0224: dt=110.976000, rms=0.638 (0.176%), neg=0, invalid=96777 0225: dt=6.936000, rms=0.638 (-0.002%), neg=0, invalid=96777 0226: dt=6.936000, rms=0.638 (0.000%), neg=0, invalid=96777 0227: dt=6.936000, rms=0.638 (-0.001%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.638, neg=0, invalid=96777 0228: dt=129.472000, rms=0.637 (0.130%), neg=0, invalid=96777 0229: dt=369.920000, rms=0.635 (0.258%), neg=0, invalid=96777 0230: dt=32.368000, rms=0.635 (0.018%), neg=0, invalid=96777 0231: dt=32.368000, rms=0.635 (-0.001%), neg=0, invalid=96777 setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.637, neg=0, invalid=96777 0232: dt=124.416000, rms=0.632 (0.745%), neg=0, invalid=96777 0233: dt=82.944000, rms=0.624 (1.267%), neg=0, invalid=96777 0234: dt=25.920000, rms=0.621 (0.505%), neg=0, invalid=96777 0235: dt=331.776000, rms=0.611 (1.547%), neg=0, invalid=96777 0236: dt=31.104000, rms=0.605 (0.961%), neg=0, invalid=96777 0237: dt=36.288000, rms=0.603 (0.442%), neg=0, invalid=96777 0238: dt=124.416000, rms=0.600 (0.433%), neg=0, invalid=96777 0239: dt=31.104000, rms=0.598 (0.341%), neg=0, invalid=96777 0240: dt=145.152000, rms=0.596 (0.368%), neg=0, invalid=96777 0241: dt=31.104000, rms=0.594 (0.308%), neg=0, invalid=96777 0242: dt=145.152000, rms=0.592 (0.304%), neg=0, invalid=96777 0243: dt=36.288000, rms=0.590 (0.316%), neg=0, invalid=96777 0244: dt=36.288000, rms=0.590 (0.091%), neg=0, invalid=96777 0245: dt=145.152000, rms=0.588 (0.313%), neg=0, invalid=96777 0246: dt=20.736000, rms=0.587 (0.158%), neg=0, invalid=96777 0247: dt=331.776000, rms=0.584 (0.455%), neg=0, invalid=96777 0248: dt=36.288000, rms=0.582 (0.498%), neg=0, invalid=96777 0249: dt=25.920000, rms=0.581 (0.024%), neg=0, invalid=96777 0250: dt=25.920000, rms=0.581 (0.057%), neg=0, invalid=96777 0251: dt=25.920000, rms=0.581 (0.079%), neg=0, invalid=96777 0252: dt=25.920000, rms=0.580 (0.107%), neg=0, invalid=96777 0253: dt=25.920000, rms=0.579 (0.132%), neg=0, invalid=96777 0254: dt=25.920000, rms=0.578 (0.203%), neg=0, invalid=96777 0255: dt=25.920000, rms=0.577 (0.227%), neg=0, invalid=96777 0256: dt=25.920000, rms=0.575 (0.241%), neg=0, invalid=96777 0257: dt=25.920000, rms=0.574 (0.242%), neg=0, invalid=96777 0258: dt=25.920000, rms=0.573 (0.236%), neg=0, invalid=96777 0259: dt=25.920000, rms=0.571 (0.222%), neg=0, invalid=96777 0260: dt=25.920000, rms=0.570 (0.234%), neg=0, invalid=96777 0261: dt=25.920000, rms=0.569 (0.246%), neg=0, invalid=96777 0262: dt=25.920000, rms=0.567 (0.238%), neg=0, invalid=96777 0263: dt=25.920000, rms=0.566 (0.225%), neg=0, invalid=96777 0264: dt=25.920000, rms=0.565 (0.210%), neg=0, invalid=96777 0265: dt=25.920000, rms=0.564 (0.194%), neg=0, invalid=96777 0266: dt=25.920000, rms=0.563 (0.188%), neg=0, invalid=96777 0267: dt=25.920000, rms=0.561 (0.201%), neg=0, invalid=96777 0268: dt=25.920000, rms=0.560 (0.185%), neg=0, invalid=96777 0269: dt=25.920000, rms=0.560 (0.154%), neg=0, invalid=96777 0270: dt=25.920000, rms=0.559 (0.143%), neg=0, invalid=96777 0271: dt=25.920000, rms=0.558 (0.116%), neg=0, invalid=96777 0272: dt=25.920000, rms=0.557 (0.115%), neg=0, invalid=96777 0273: dt=25.920000, rms=0.557 (0.130%), neg=0, invalid=96777 0274: dt=25.920000, rms=0.556 (0.137%), neg=0, invalid=96777 0275: dt=25.920000, rms=0.555 (0.115%), neg=0, invalid=96777 0276: dt=25.920000, rms=0.555 (0.099%), neg=0, invalid=96777 0277: dt=25.920000, rms=0.554 (0.069%), neg=0, invalid=96777 0278: dt=25.920000, rms=0.554 (0.093%), neg=0, invalid=96777 0279: dt=25.920000, rms=0.553 (0.095%), neg=0, invalid=96777 0280: dt=25.920000, rms=0.553 (0.081%), neg=0, invalid=96777 0281: dt=25.920000, rms=0.553 (0.061%), neg=0, invalid=96777 0282: dt=25.920000, rms=0.552 (0.052%), neg=0, invalid=96777 0283: dt=25.920000, rms=0.552 (0.066%), neg=0, invalid=96777 0284: dt=25.920000, rms=0.551 (0.090%), neg=0, invalid=96777 0285: dt=25.920000, rms=0.551 (0.087%), neg=0, invalid=96777 0286: dt=25.920000, rms=0.551 (0.070%), neg=0, invalid=96777 0287: dt=25.920000, rms=0.550 (0.067%), neg=0, invalid=96777 0288: dt=25.920000, rms=0.550 (0.062%), neg=0, invalid=96777 0289: dt=25.920000, rms=0.549 (0.070%), neg=0, invalid=96777 0290: dt=25.920000, rms=0.549 (0.072%), neg=0, invalid=96777 0291: dt=25.920000, rms=0.549 (0.069%), neg=0, invalid=96777 0292: dt=25.920000, rms=0.548 (0.061%), neg=0, invalid=96777 0293: dt=25.920000, rms=0.548 (0.056%), neg=0, invalid=96777 0294: dt=25.920000, rms=0.548 (0.048%), neg=0, invalid=96777 0295: dt=25.920000, rms=0.547 (0.064%), neg=0, invalid=96777 0296: dt=25.920000, rms=0.547 (0.077%), neg=0, invalid=96777 0297: dt=25.920000, rms=0.547 (0.067%), neg=0, invalid=96777 0298: dt=25.920000, rms=0.546 (0.049%), neg=0, invalid=96777 0299: dt=25.920000, rms=0.546 (0.041%), neg=0, invalid=96777 0300: dt=25.920000, rms=0.546 (0.041%), neg=0, invalid=96777 0301: dt=25.920000, rms=0.546 (0.053%), neg=0, invalid=96777 0302: dt=25.920000, rms=0.545 (0.064%), neg=0, invalid=96777 0303: dt=25.920000, rms=0.545 (0.049%), neg=0, invalid=96777 0304: dt=25.920000, rms=0.545 (0.033%), neg=0, invalid=96777 0305: dt=25.920000, rms=0.545 (0.039%), neg=0, invalid=96777 0306: dt=25.920000, rms=0.544 (0.042%), neg=0, invalid=96777 0307: dt=25.920000, rms=0.544 (0.044%), neg=0, invalid=96777 0308: dt=25.920000, rms=0.544 (0.047%), neg=0, invalid=96777 0309: dt=25.920000, rms=0.544 (0.036%), neg=0, invalid=96777 0310: dt=25.920000, rms=0.544 (0.029%), neg=0, invalid=96777 0311: dt=25.920000, rms=0.543 (0.041%), neg=0, invalid=96777 0312: dt=25.920000, rms=0.543 (0.045%), neg=0, invalid=96777 0313: dt=25.920000, rms=0.543 (0.050%), neg=0, invalid=96777 0314: dt=25.920000, rms=0.543 (0.046%), neg=0, invalid=96777 0315: dt=25.920000, rms=0.542 (0.036%), neg=0, invalid=96777 0316: dt=25.920000, rms=0.542 (0.030%), neg=0, invalid=96777 0317: dt=25.920000, rms=0.542 (0.037%), neg=0, invalid=96777 0318: dt=25.920000, rms=0.542 (0.039%), neg=0, invalid=96777 0319: dt=25.920000, rms=0.542 (0.035%), neg=0, invalid=96777 0320: dt=25.920000, rms=0.541 (0.032%), neg=0, invalid=96777 0321: dt=25.920000, rms=0.541 (0.029%), neg=0, invalid=96777 0322: dt=25.920000, rms=0.541 (0.031%), neg=0, invalid=96777 0323: dt=25.920000, rms=0.541 (0.029%), neg=0, invalid=96777 0324: dt=25.920000, rms=0.541 (0.035%), neg=0, invalid=96777 0325: dt=25.920000, rms=0.541 (0.035%), neg=0, invalid=96777 0326: dt=25.920000, rms=0.540 (0.022%), neg=0, invalid=96777 0327: dt=25.920000, rms=0.540 (0.024%), neg=0, invalid=96777 0328: dt=25.920000, rms=0.540 (0.031%), neg=0, invalid=96777 0329: dt=25.920000, rms=0.540 (0.039%), neg=0, invalid=96777 0330: dt=25.920000, rms=0.540 (0.035%), neg=0, invalid=96777 0331: dt=25.920000, rms=0.540 (0.020%), neg=0, invalid=96777 0332: dt=25.920000, rms=0.540 (0.016%), neg=0, invalid=96777 0333: dt=25.920000, rms=0.540 (0.005%), neg=0, invalid=96777 0334: dt=25.920000, rms=0.539 (0.012%), neg=0, invalid=96777 0335: dt=25.920000, rms=0.539 (0.006%), neg=0, invalid=96777 0336: dt=25.920000, rms=0.539 (-0.001%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.539, neg=0, invalid=96777 0337: dt=124.416000, rms=0.538 (0.317%), neg=0, invalid=96777 0338: dt=36.288000, rms=0.537 (0.066%), neg=0, invalid=96777 0339: dt=36.288000, rms=0.537 (0.005%), neg=0, invalid=96777 0340: dt=36.288000, rms=0.537 (0.031%), neg=0, invalid=96777 0341: dt=36.288000, rms=0.537 (0.030%), neg=0, invalid=96777 0342: dt=36.288000, rms=0.537 (0.033%), neg=0, invalid=96777 0343: dt=36.288000, rms=0.537 (0.036%), neg=0, invalid=96777 0344: dt=36.288000, rms=0.536 (0.035%), neg=0, invalid=96777 0345: dt=36.288000, rms=0.536 (0.028%), neg=0, invalid=96777 0346: dt=36.288000, rms=0.536 (0.033%), neg=0, invalid=96777 0347: dt=36.288000, rms=0.536 (0.033%), neg=0, invalid=96777 0348: dt=36.288000, rms=0.536 (0.032%), neg=0, invalid=96777 0349: dt=36.288000, rms=0.536 (0.036%), neg=0, invalid=96777 0350: dt=36.288000, rms=0.535 (0.040%), neg=0, invalid=96777 0351: dt=36.288000, rms=0.535 (0.042%), neg=0, invalid=96777 0352: dt=36.288000, rms=0.535 (0.042%), neg=0, invalid=96777 0353: dt=36.288000, rms=0.535 (0.051%), neg=0, invalid=96777 0354: dt=36.288000, rms=0.534 (0.054%), neg=0, invalid=96777 0355: dt=36.288000, rms=0.534 (0.052%), neg=0, invalid=96777 0356: dt=36.288000, rms=0.534 (0.043%), neg=0, invalid=96777 0357: dt=36.288000, rms=0.534 (0.036%), neg=0, invalid=96777 0358: dt=36.288000, rms=0.533 (0.050%), neg=0, invalid=96777 0359: dt=36.288000, rms=0.533 (0.059%), neg=0, invalid=96777 0360: dt=36.288000, rms=0.533 (0.047%), neg=0, invalid=96777 0361: dt=36.288000, rms=0.533 (0.034%), neg=0, invalid=96777 0362: dt=36.288000, rms=0.533 (0.030%), neg=0, invalid=96777 0363: dt=36.288000, rms=0.532 (0.034%), neg=0, invalid=96777 0364: dt=36.288000, rms=0.532 (0.030%), neg=0, invalid=96777 0365: dt=36.288000, rms=0.532 (0.030%), neg=0, invalid=96777 0366: dt=36.288000, rms=0.532 (0.017%), neg=0, invalid=96777 0367: dt=36.288000, rms=0.532 (0.033%), neg=0, invalid=96777 0368: dt=36.288000, rms=0.532 (0.036%), neg=0, invalid=96777 0369: dt=36.288000, rms=0.531 (0.036%), neg=0, invalid=96777 0370: dt=36.288000, rms=0.531 (0.029%), neg=0, invalid=96777 0371: dt=36.288000, rms=0.531 (0.024%), neg=0, invalid=96777 0372: dt=36.288000, rms=0.531 (0.033%), neg=0, invalid=96777 0373: dt=36.288000, rms=0.531 (0.032%), neg=0, invalid=96777 0374: dt=36.288000, rms=0.531 (0.038%), neg=0, invalid=96777 0375: dt=36.288000, rms=0.530 (0.034%), neg=0, invalid=96777 0376: dt=36.288000, rms=0.530 (0.029%), neg=0, invalid=96777 0377: dt=36.288000, rms=0.530 (0.026%), neg=0, invalid=96777 0378: dt=36.288000, rms=0.530 (0.032%), neg=0, invalid=96777 0379: dt=36.288000, rms=0.530 (0.031%), neg=0, invalid=96777 0380: dt=36.288000, rms=0.530 (0.036%), neg=0, invalid=96777 0381: dt=36.288000, rms=0.529 (0.029%), neg=0, invalid=96777 0382: dt=36.288000, rms=0.529 (0.031%), neg=0, invalid=96777 0383: dt=36.288000, rms=0.529 (0.045%), neg=0, invalid=96777 0384: dt=36.288000, rms=0.529 (0.035%), neg=0, invalid=96777 0385: dt=36.288000, rms=0.529 (0.029%), neg=0, invalid=96777 0386: dt=36.288000, rms=0.529 (0.020%), neg=0, invalid=96777 0387: dt=36.288000, rms=0.528 (0.032%), neg=0, invalid=96777 0388: dt=36.288000, rms=0.528 (0.040%), neg=0, invalid=96777 0389: dt=36.288000, rms=0.528 (0.029%), neg=0, invalid=96777 0390: dt=36.288000, rms=0.528 (0.031%), neg=0, invalid=96777 0391: dt=36.288000, rms=0.528 (0.015%), neg=0, invalid=96777 0392: dt=36.288000, rms=0.528 (0.015%), neg=0, invalid=96777 0393: dt=36.288000, rms=0.528 (0.015%), neg=0, invalid=96777 0394: dt=62.208000, rms=0.527 (0.027%), neg=0, invalid=96777 0395: dt=0.567000, rms=0.527 (-0.001%), neg=0, invalid=96777 setting smoothness coefficient to 0.118 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.538, neg=0, invalid=96777 0396: dt=11.200000, rms=0.538 (0.073%), neg=0, invalid=96777 0397: dt=19.200000, rms=0.538 (0.081%), neg=0, invalid=96777 0398: dt=44.800000, rms=0.537 (0.194%), neg=0, invalid=96777 0399: dt=11.200000, rms=0.536 (0.108%), neg=0, invalid=96777 0400: dt=44.800000, rms=0.534 (0.308%), neg=0, invalid=96777 0401: dt=8.507937, rms=0.533 (0.158%), neg=0, invalid=96777 0402: dt=44.800000, rms=0.532 (0.305%), neg=0, invalid=96777 0403: dt=11.200000, rms=0.531 (0.118%), neg=0, invalid=96777 0404: dt=44.800000, rms=0.530 (0.281%), neg=0, invalid=96777 0405: dt=9.600000, rms=0.529 (0.081%), neg=0, invalid=96777 0406: dt=25.600000, rms=0.529 (0.138%), neg=0, invalid=96777 0407: dt=8.000000, rms=0.528 (0.073%), neg=0, invalid=96777 0408: dt=128.000000, rms=0.526 (0.494%), neg=0, invalid=96777 0409: dt=11.200000, rms=0.525 (0.144%), neg=0, invalid=96777 0410: dt=11.200000, rms=0.524 (0.112%), neg=0, invalid=96777 0411: dt=38.400000, rms=0.524 (0.134%), neg=0, invalid=96777 0412: dt=11.200000, rms=0.523 (0.089%), neg=0, invalid=96777 0413: dt=11.200000, rms=0.523 (0.070%), neg=0, invalid=96777 0414: dt=44.800000, rms=0.522 (0.119%), neg=0, invalid=96777 0415: dt=9.600000, rms=0.522 (0.072%), neg=0, invalid=96777 0416: dt=25.600000, rms=0.521 (0.066%), neg=0, invalid=96777 0417: dt=11.200000, rms=0.521 (0.056%), neg=0, invalid=96777 0418: dt=11.200000, rms=0.521 (0.043%), neg=0, invalid=96777 0419: dt=11.200000, rms=0.521 (0.043%), neg=0, invalid=96777 0420: dt=11.200000, rms=0.520 (0.059%), neg=0, invalid=96777 0421: dt=11.200000, rms=0.520 (0.093%), neg=0, invalid=96777 0422: dt=11.200000, rms=0.519 (0.109%), neg=0, invalid=96777 0423: dt=11.200000, rms=0.519 (0.133%), neg=0, invalid=96777 0424: dt=11.200000, rms=0.518 (0.148%), neg=0, invalid=96777 0425: dt=11.200000, rms=0.517 (0.155%), neg=0, invalid=96777 0426: dt=11.200000, rms=0.516 (0.168%), neg=0, invalid=96777 0427: dt=11.200000, rms=0.515 (0.173%), neg=0, invalid=96777 0428: dt=11.200000, rms=0.514 (0.153%), neg=0, invalid=96777 0429: dt=11.200000, rms=0.514 (0.154%), neg=0, invalid=96777 0430: dt=11.200000, rms=0.513 (0.156%), neg=0, invalid=96777 0431: dt=11.200000, rms=0.512 (0.152%), neg=0, invalid=96777 0432: dt=11.200000, rms=0.511 (0.146%), neg=0, invalid=96777 0433: dt=11.200000, rms=0.511 (0.134%), neg=0, invalid=96777 0434: dt=11.200000, rms=0.510 (0.135%), neg=0, invalid=96777 0435: dt=11.200000, rms=0.509 (0.140%), neg=0, invalid=96777 0436: dt=11.200000, rms=0.509 (0.116%), neg=0, invalid=96777 0437: dt=11.200000, rms=0.508 (0.114%), neg=0, invalid=96777 0438: dt=11.200000, rms=0.508 (0.108%), neg=0, invalid=96777 0439: dt=11.200000, rms=0.507 (0.094%), neg=0, invalid=96777 0440: dt=11.200000, rms=0.507 (0.082%), neg=0, invalid=96777 0441: dt=11.200000, rms=0.506 (0.081%), neg=0, invalid=96777 0442: dt=11.200000, rms=0.506 (0.083%), neg=0, invalid=96777 0443: dt=11.200000, rms=0.505 (0.073%), neg=0, invalid=96777 0444: dt=11.200000, rms=0.505 (0.083%), neg=0, invalid=96777 0445: dt=11.200000, rms=0.505 (0.069%), neg=0, invalid=96777 0446: dt=11.200000, rms=0.504 (0.056%), neg=0, invalid=96777 0447: dt=11.200000, rms=0.504 (0.059%), neg=0, invalid=96777 0448: dt=11.200000, rms=0.504 (0.051%), neg=0, invalid=96777 0449: dt=11.200000, rms=0.504 (0.049%), neg=0, invalid=96777 0450: dt=11.200000, rms=0.503 (0.055%), neg=0, invalid=96777 0451: dt=11.200000, rms=0.503 (0.043%), neg=0, invalid=96777 0452: dt=11.200000, rms=0.503 (0.045%), neg=0, invalid=96777 0453: dt=11.200000, rms=0.503 (0.043%), neg=0, invalid=96777 0454: dt=11.200000, rms=0.502 (0.042%), neg=0, invalid=96777 0455: dt=11.200000, rms=0.502 (0.029%), neg=0, invalid=96777 0456: dt=11.200000, rms=0.502 (0.025%), neg=0, invalid=96777 0457: dt=11.200000, rms=0.502 (0.043%), neg=0, invalid=96777 0458: dt=11.200000, rms=0.502 (0.040%), neg=0, invalid=96777 0459: dt=11.200000, rms=0.502 (0.023%), neg=0, invalid=96777 0460: dt=11.200000, rms=0.502 (0.031%), neg=0, invalid=96777 0461: dt=11.200000, rms=0.501 (0.039%), neg=0, invalid=96777 0462: dt=11.200000, rms=0.501 (0.042%), neg=0, invalid=96777 0463: dt=11.200000, rms=0.501 (0.041%), neg=0, invalid=96777 0464: dt=11.200000, rms=0.501 (0.034%), neg=0, invalid=96777 0465: dt=11.200000, rms=0.501 (0.026%), neg=0, invalid=96777 0466: dt=11.200000, rms=0.500 (0.019%), neg=0, invalid=96777 0467: dt=11.200000, rms=0.500 (0.019%), neg=0, invalid=96777 0468: dt=19.200000, rms=0.500 (0.011%), neg=0, invalid=96777 0469: dt=19.200000, rms=0.500 (0.000%), neg=0, invalid=96777 0470: dt=19.200000, rms=0.500 (-0.013%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.500, neg=0, invalid=96777 0471: dt=44.800000, rms=0.499 (0.338%), neg=0, invalid=96777 0472: dt=6.400000, rms=0.499 (0.019%), neg=0, invalid=96777 0473: dt=6.400000, rms=0.498 (0.021%), neg=0, invalid=96777 0474: dt=6.400000, rms=0.498 (0.007%), neg=0, invalid=96777 0475: dt=6.400000, rms=0.498 (0.000%), neg=0, invalid=96777 0476: dt=19.200000, rms=0.498 (0.020%), neg=0, invalid=96777 0477: dt=8.000000, rms=0.498 (0.006%), neg=0, invalid=96777 setting smoothness coefficient to 0.400 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.526, neg=0, invalid=96777 0478: dt=0.000000, rms=0.526 (0.004%), neg=0, invalid=96777 0479: dt=0.000000, rms=0.526 (0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.526, neg=0, invalid=96777 0480: dt=0.000000, rms=0.526 (0.000%), neg=0, invalid=96777 setting smoothness coefficient to 1.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.579, neg=0, invalid=96777 0481: dt=1.584071, rms=0.573 (1.140%), neg=0, invalid=96777 0482: dt=0.568182, rms=0.572 (0.070%), neg=0, invalid=96777 0483: dt=0.256000, rms=0.572 (0.010%), neg=0, invalid=96777 0484: dt=0.256000, rms=0.572 (-0.002%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.572, neg=0, invalid=96777 0485: dt=1.169643, rms=0.571 (0.202%), neg=0, invalid=96777 0486: dt=0.448000, rms=0.571 (0.027%), neg=0, invalid=96777 0487: dt=0.448000, rms=0.571 (0.010%), neg=0, invalid=96777 0488: dt=0.448000, rms=0.571 (-0.028%), neg=0, invalid=96777 resetting metric properties... setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.524, neg=0, invalid=96777 0489: dt=0.112000, rms=0.519 (0.979%), neg=0, invalid=96777 0490: dt=0.028000, rms=0.518 (0.193%), neg=0, invalid=96777 0491: dt=0.151562, rms=0.513 (0.988%), neg=0, invalid=96777 0492: dt=0.020000, rms=0.512 (0.095%), neg=0, invalid=96777 0493: dt=0.024000, rms=0.512 (0.111%), neg=0, invalid=96777 0494: dt=0.129237, rms=0.509 (0.569%), neg=0, invalid=96777 0495: dt=0.007000, rms=0.509 (0.023%), neg=0, invalid=96777 0496: dt=0.007000, rms=0.509 (0.025%), neg=0, invalid=96777 0497: dt=0.007000, rms=0.508 (0.046%), neg=0, invalid=96777 0498: dt=0.007000, rms=0.508 (0.064%), neg=0, invalid=96777 0499: dt=0.007000, rms=0.508 (0.080%), neg=0, invalid=96777 0500: dt=0.007000, rms=0.507 (0.094%), neg=0, invalid=96777 0501: dt=0.007000, rms=0.507 (0.104%), neg=0, invalid=96777 0502: dt=0.007000, rms=0.506 (0.114%), neg=0, invalid=96777 0503: dt=0.007000, rms=0.505 (0.122%), neg=0, invalid=96777 0504: dt=0.007000, rms=0.505 (0.126%), neg=0, invalid=96777 0505: dt=0.007000, rms=0.504 (0.129%), neg=0, invalid=96777 0506: dt=0.007000, rms=0.503 (0.131%), neg=0, invalid=96777 0507: dt=0.007000, rms=0.503 (0.132%), neg=0, invalid=96777 0508: dt=0.007000, rms=0.502 (0.129%), neg=0, invalid=96777 0509: dt=0.007000, rms=0.502 (0.128%), neg=0, invalid=96777 0510: dt=0.007000, rms=0.501 (0.124%), neg=0, invalid=96777 0511: dt=0.007000, rms=0.500 (0.118%), neg=0, invalid=96777 0512: dt=0.007000, rms=0.500 (0.114%), neg=0, invalid=96777 0513: dt=0.007000, rms=0.499 (0.108%), neg=0, invalid=96777 0514: dt=0.007000, rms=0.499 (0.100%), neg=0, invalid=96777 0515: dt=0.007000, rms=0.498 (0.097%), neg=0, invalid=96777 0516: dt=0.007000, rms=0.498 (0.090%), neg=0, invalid=96777 0517: dt=0.007000, rms=0.497 (0.085%), neg=0, invalid=96777 0518: dt=0.007000, rms=0.497 (0.076%), neg=0, invalid=96777 0519: dt=0.007000, rms=0.497 (0.071%), neg=0, invalid=96777 0520: dt=0.007000, rms=0.496 (0.066%), neg=0, invalid=96777 0521: dt=0.007000, rms=0.496 (0.059%), neg=0, invalid=96777 0522: dt=0.007000, rms=0.496 (0.054%), neg=0, invalid=96777 0523: dt=0.007000, rms=0.495 (0.047%), neg=0, invalid=96777 0524: dt=0.007000, rms=0.495 (0.043%), neg=0, invalid=96777 0525: dt=0.007000, rms=0.495 (0.039%), neg=0, invalid=96777 0526: dt=0.007000, rms=0.495 (0.034%), neg=0, invalid=96777 0527: dt=0.007000, rms=0.495 (0.032%), neg=0, invalid=96777 0528: dt=0.007000, rms=0.495 (0.028%), neg=0, invalid=96777 0529: dt=0.007000, rms=0.494 (0.024%), neg=0, invalid=96777 0530: dt=0.007000, rms=0.494 (0.024%), neg=0, invalid=96777 0531: dt=0.320000, rms=0.494 (0.004%), neg=0, invalid=96777 0532: dt=0.020000, rms=0.494 (0.002%), neg=0, invalid=96777 0533: dt=0.020000, rms=0.494 (0.003%), neg=0, invalid=96777 0534: dt=0.020000, rms=0.494 (0.007%), neg=0, invalid=96777 0535: dt=0.020000, rms=0.494 (0.013%), neg=0, invalid=96777 0536: dt=0.020000, rms=0.494 (0.013%), neg=0, invalid=96777 0537: dt=0.020000, rms=0.494 (0.015%), neg=0, invalid=96777 0538: dt=0.020000, rms=0.494 (0.004%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.494, neg=0, invalid=96777 0539: dt=0.112885, rms=0.492 (0.327%), neg=0, invalid=96777 0540: dt=0.112000, rms=0.491 (0.246%), neg=0, invalid=96777 0541: dt=0.098451, rms=0.490 (0.163%), neg=0, invalid=96777 0542: dt=0.080000, rms=0.490 (0.108%), neg=0, invalid=96777 0543: dt=0.007000, rms=0.490 (0.008%), neg=0, invalid=96777 0544: dt=0.007000, rms=0.490 (0.008%), neg=0, invalid=96777 0545: dt=0.007000, rms=0.490 (0.016%), neg=0, invalid=96777 0546: dt=0.007000, rms=0.490 (0.020%), neg=0, invalid=96777 0547: dt=0.007000, rms=0.490 (0.026%), neg=0, invalid=96777 0548: dt=0.007000, rms=0.489 (0.029%), neg=0, invalid=96777 0549: dt=0.007000, rms=0.489 (0.032%), neg=0, invalid=96777 0550: dt=0.007000, rms=0.489 (0.037%), neg=0, invalid=96777 0551: dt=0.007000, rms=0.489 (0.037%), neg=0, invalid=96777 0552: dt=0.007000, rms=0.489 (0.038%), neg=0, invalid=96777 0553: dt=0.007000, rms=0.489 (0.038%), neg=0, invalid=96777 0554: dt=0.007000, rms=0.488 (0.040%), neg=0, invalid=96777 0555: dt=0.007000, rms=0.488 (0.039%), neg=0, invalid=96777 0556: dt=0.007000, rms=0.488 (0.039%), neg=0, invalid=96777 0557: dt=0.007000, rms=0.488 (0.036%), neg=0, invalid=96777 0558: dt=0.007000, rms=0.488 (0.035%), neg=0, invalid=96777 0559: dt=0.007000, rms=0.487 (0.033%), neg=0, invalid=96777 0560: dt=0.007000, rms=0.487 (0.030%), neg=0, invalid=96777 0561: dt=0.007000, rms=0.487 (0.028%), neg=0, invalid=96777 0562: dt=0.007000, rms=0.487 (0.025%), neg=0, invalid=96777 0563: dt=0.007000, rms=0.487 (0.025%), neg=0, invalid=96777 0564: dt=0.007000, rms=0.487 (0.023%), neg=0, invalid=96777 0565: dt=0.007000, rms=0.487 (0.019%), neg=0, invalid=96777 0566: dt=0.000000, rms=0.487 (-0.001%), neg=0, invalid=96777 label assignment complete, 0 changed (0.00%) ********************************************************************************************* ********************************************************************************************* ********************************************************************************************* ********************* ALLOWING NEGATIVE NODES IN DEFORMATION ******************************** ********************************************************************************************* ********************************************************************************************* ********************************************************************************************* **************** pass 1 of 1 ************************ setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.485, neg=0, invalid=96777 0567: dt=0.000000, rms=0.485 (0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.485, neg=0, invalid=96777 0568: dt=295.936000, rms=0.484 (0.223%), neg=0, invalid=96777 0569: dt=27.744000, rms=0.484 (0.009%), neg=0, invalid=96777 0570: dt=27.744000, rms=0.484 (0.002%), neg=0, invalid=96777 0571: dt=27.744000, rms=0.484 (-0.009%), neg=0, invalid=96777 setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.484, neg=0, invalid=96777 0572: dt=36.288000, rms=0.483 (0.219%), neg=0, invalid=96777 0573: dt=103.680000, rms=0.481 (0.374%), neg=0, invalid=96777 0574: dt=36.288000, rms=0.480 (0.176%), neg=0, invalid=96777 0575: dt=36.288000, rms=0.479 (0.148%), neg=0, invalid=96777 0576: dt=36.288000, rms=0.478 (0.171%), neg=0, invalid=96777 iter 0, gcam->neg = 2 after 6 iterations, nbhd size=1, neg = 0 0577: dt=36.288000, rms=0.478 (0.178%), neg=0, invalid=96777 0578: dt=36.288000, rms=0.477 (0.097%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0579: dt=36.288000, rms=0.477 (0.102%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0580: dt=36.288000, rms=0.476 (0.026%), neg=0, invalid=96777 0581: dt=36.288000, rms=0.476 (0.068%), neg=0, invalid=96777 0582: dt=82.944000, rms=0.476 (0.103%), neg=0, invalid=96777 0583: dt=25.920000, rms=0.475 (0.058%), neg=0, invalid=96777 0584: dt=25.920000, rms=0.475 (0.029%), neg=0, invalid=96777 0585: dt=25.920000, rms=0.475 (0.048%), neg=0, invalid=96777 0586: dt=25.920000, rms=0.475 (0.055%), neg=0, invalid=96777 0587: dt=25.920000, rms=0.474 (0.071%), neg=0, invalid=96777 0588: dt=25.920000, rms=0.474 (0.077%), neg=0, invalid=96777 0589: dt=25.920000, rms=0.474 (0.066%), neg=0, invalid=96777 0590: dt=25.920000, rms=0.473 (0.055%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.473, neg=0, invalid=96777 0591: dt=145.152000, rms=0.470 (0.641%), neg=0, invalid=96777 0592: dt=25.920000, rms=0.470 (0.111%), neg=0, invalid=96777 0593: dt=25.920000, rms=0.470 (0.050%), neg=0, invalid=96777 0594: dt=25.920000, rms=0.469 (0.050%), neg=0, invalid=96777 0595: dt=25.920000, rms=0.469 (0.064%), neg=0, invalid=96777 0596: dt=25.920000, rms=0.469 (0.074%), neg=0, invalid=96777 0597: dt=25.920000, rms=0.468 (0.111%), neg=0, invalid=96777 0598: dt=25.920000, rms=0.468 (0.104%), neg=0, invalid=96777 0599: dt=36.288000, rms=0.468 (0.031%), neg=0, invalid=96777 setting smoothness coefficient to 0.118 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.468, neg=0, invalid=96777 iter 0, gcam->neg = 2 after 5 iterations, nbhd size=1, neg = 0 0600: dt=38.400000, rms=0.466 (0.477%), neg=0, invalid=96777 iter 0, gcam->neg = 28 after 21 iterations, nbhd size=2, neg = 0 0601: dt=32.000000, rms=0.464 (0.421%), neg=0, invalid=96777 0602: dt=9.939394, rms=0.463 (0.243%), neg=0, invalid=96777 0603: dt=9.939394, rms=0.462 (0.143%), neg=0, invalid=96777 iter 0, gcam->neg = 4 after 8 iterations, nbhd size=1, neg = 0 0604: dt=9.939394, rms=0.461 (0.182%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 5 iterations, nbhd size=1, neg = 0 0605: dt=9.939394, rms=0.460 (0.222%), neg=0, invalid=96777 iter 0, gcam->neg = 3 after 2 iterations, nbhd size=0, neg = 0 0606: dt=9.939394, rms=0.459 (0.247%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 12 iterations, nbhd size=2, neg = 0 0607: dt=9.939394, rms=0.458 (0.243%), neg=0, invalid=96777 0608: dt=9.939394, rms=0.457 (0.238%), neg=0, invalid=96777 0609: dt=9.939394, rms=0.456 (0.248%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 6 iterations, nbhd size=1, neg = 0 0610: dt=9.939394, rms=0.455 (0.249%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 5 iterations, nbhd size=1, neg = 0 0611: dt=9.939394, rms=0.454 (0.211%), neg=0, invalid=96777 0612: dt=9.939394, rms=0.453 (0.175%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 6 iterations, nbhd size=1, neg = 0 0613: dt=9.939394, rms=0.452 (0.185%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 5 iterations, nbhd size=1, neg = 0 0614: dt=9.939394, rms=0.451 (0.164%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 6 iterations, nbhd size=1, neg = 0 0615: dt=9.939394, rms=0.451 (0.146%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 7 iterations, nbhd size=1, neg = 0 0616: dt=9.939394, rms=0.450 (0.140%), neg=0, invalid=96777 0617: dt=9.939394, rms=0.450 (0.116%), neg=0, invalid=96777 0618: dt=9.939394, rms=0.449 (0.103%), neg=0, invalid=96777 iter 0, gcam->neg = 2 after 12 iterations, nbhd size=2, neg = 0 0619: dt=19.200000, rms=0.449 (0.039%), neg=0, invalid=96777 0620: dt=19.200000, rms=0.449 (0.030%), neg=0, invalid=96777 0621: dt=19.200000, rms=0.449 (-0.007%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.449, neg=0, invalid=96777 iter 0, gcam->neg = 10 after 14 iterations, nbhd size=2, neg = 0 0622: dt=32.000000, rms=0.447 (0.469%), neg=0, invalid=96777 0623: dt=10.168224, rms=0.446 (0.249%), neg=0, invalid=96777 0624: dt=10.168224, rms=0.445 (0.135%), neg=0, invalid=96777 0625: dt=10.168224, rms=0.445 (0.133%), neg=0, invalid=96777 iter 0, gcam->neg = 8 after 19 iterations, nbhd size=2, neg = 0 0626: dt=10.168224, rms=0.444 (0.187%), neg=0, invalid=96777 0627: dt=10.168224, rms=0.443 (0.136%), neg=0, invalid=96777 0628: dt=10.168224, rms=0.443 (0.112%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 6 iterations, nbhd size=1, neg = 0 0629: dt=10.168224, rms=0.442 (0.083%), neg=0, invalid=96777 0630: dt=32.000000, rms=0.442 (0.073%), neg=0, invalid=96777 iter 0, gcam->neg = 4 after 20 iterations, nbhd size=2, neg = 0 0631: dt=32.000000, rms=0.442 (-0.117%), neg=0, invalid=96777 setting smoothness coefficient to 0.400 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.448, neg=0, invalid=96777 0632: dt=1.008000, rms=0.448 (0.009%), neg=0, invalid=96777 0633: dt=0.720000, rms=0.448 (0.004%), neg=0, invalid=96777 0634: dt=0.720000, rms=0.448 (0.000%), neg=0, invalid=96777 0635: dt=0.720000, rms=0.448 (-0.012%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.448, neg=0, invalid=96777 0636: dt=4.032000, rms=0.448 (0.064%), neg=0, invalid=96777 0637: dt=2.500000, rms=0.448 (0.020%), neg=0, invalid=96777 iter 0, gcam->neg = 2 after 5 iterations, nbhd size=1, neg = 0 0638: dt=2.500000, rms=0.448 (0.000%), neg=0, invalid=96777 iter 0, gcam->neg = 6 after 7 iterations, nbhd size=1, neg = 0 0639: dt=2.500000, rms=0.448 (-0.030%), neg=0, invalid=96777 setting smoothness coefficient to 1.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.457, neg=0, invalid=96777 0640: dt=0.000000, rms=0.457 (0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.457, neg=0, invalid=96777 iter 0, gcam->neg = 11 after 1 iterations, nbhd size=0, neg = 0 0641: dt=0.384615, rms=0.456 (0.051%), neg=0, invalid=96777 iter 0, gcam->neg = 8 after 7 iterations, nbhd size=1, neg = 0 0642: dt=0.192000, rms=0.456 (0.018%), neg=0, invalid=96777 iter 0, gcam->neg = 3 after 1 iterations, nbhd size=0, neg = 0 0643: dt=0.192000, rms=0.456 (0.014%), neg=0, invalid=96777 iter 0, gcam->neg = 4 after 2 iterations, nbhd size=0, neg = 0 0644: dt=0.192000, rms=0.456 (0.017%), neg=0, invalid=96777 iter 0, gcam->neg = 2 after 7 iterations, nbhd size=1, neg = 0 0645: dt=0.192000, rms=0.456 (-0.009%), neg=0, invalid=96777 resetting metric properties... setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.444, neg=0, invalid=96777 iter 0, gcam->neg = 617 after 24 iterations, nbhd size=2, neg = 0 0646: dt=1.898361, rms=0.405 (8.859%), neg=0, invalid=96777 0647: dt=0.000109, rms=0.405 (0.002%), neg=0, invalid=96777 0648: dt=0.000109, rms=0.405 (0.000%), neg=0, invalid=96777 0649: dt=0.000109, rms=0.405 (-0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.405, neg=0, invalid=96777 0650: dt=0.000438, rms=0.405 (0.000%), neg=0, invalid=96777 0651: dt=0.000000, rms=0.405 (0.000%), neg=0, invalid=96777 iter 0, gcam->neg = 43 after 6 iterations, nbhd size=1, neg = 0 0652: dt=0.050000, rms=0.405 (-0.188%), neg=0, invalid=96777 label assignment complete, 0 changed (0.00%) label assignment complete, 0 changed (0.00%) ***************** morphing with label term set to 0 ******************************* **************** pass 1 of 1 ************************ setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.390, neg=0, invalid=96777 0653: dt=0.000000, rms=0.390 (-0.126%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.390, neg=0, invalid=96777 0654: dt=4.624000, rms=0.390 (0.000%), neg=0, invalid=96777 0655: dt=1.445000, rms=0.390 (0.000%), neg=0, invalid=96777 0656: dt=1.445000, rms=0.390 (-0.000%), neg=0, invalid=96777 setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.390, neg=0, invalid=96777 0657: dt=0.000000, rms=0.390 (0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.390, neg=0, invalid=96777 0658: dt=25.920000, rms=0.390 (0.016%), neg=0, invalid=96777 0659: dt=25.920000, rms=0.390 (0.006%), neg=0, invalid=96777 0660: dt=25.920000, rms=0.390 (0.007%), neg=0, invalid=96777 0661: dt=25.920000, rms=0.390 (0.008%), neg=0, invalid=96777 0662: dt=25.920000, rms=0.390 (0.006%), neg=0, invalid=96777 0663: dt=25.920000, rms=0.390 (0.008%), neg=0, invalid=96777 0664: dt=25.920000, rms=0.390 (0.013%), neg=0, invalid=96777 0665: dt=25.920000, rms=0.390 (0.017%), neg=0, invalid=96777 0666: dt=25.920000, rms=0.390 (0.019%), neg=0, invalid=96777 0667: dt=25.920000, rms=0.390 (0.018%), neg=0, invalid=96777 setting smoothness coefficient to 0.118 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.390, neg=0, invalid=96777 iter 0, gcam->neg = 1 after 22 iterations, nbhd size=3, neg = 0 0668: dt=9.600000, rms=0.390 (0.011%), neg=0, invalid=96777 iter 0, gcam->neg = 2 after 13 iterations, nbhd size=2, neg = 0 0669: dt=4.800000, rms=0.390 (0.009%), neg=0, invalid=96777 iter 0, gcam->neg = 4 after 6 iterations, nbhd size=1, neg = 0 0670: dt=4.800000, rms=0.390 (-0.030%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.390, neg=0, invalid=96777 iter 0, gcam->neg = 8 after 22 iterations, nbhd size=2, neg = 0 0671: dt=11.200000, rms=0.390 (0.071%), neg=0, invalid=96777 iter 0, gcam->neg = 5 after 7 iterations, nbhd size=1, neg = 0 0672: dt=11.200000, rms=0.390 (0.107%), neg=0, invalid=96777 iter 0, gcam->neg = 20 after 53 iterations, nbhd size=1, neg = 0 0673: dt=44.800000, rms=0.388 (0.371%), neg=0, invalid=96777 0674: dt=2.800000, rms=0.388 (0.003%), neg=0, invalid=96777 0675: dt=2.800000, rms=0.388 (0.017%), neg=0, invalid=96777 0676: dt=2.800000, rms=0.388 (0.031%), neg=0, invalid=96777 0677: dt=2.800000, rms=0.388 (0.042%), neg=0, invalid=96777 0678: dt=2.800000, rms=0.388 (0.038%), neg=0, invalid=96777 0679: dt=2.800000, rms=0.388 (0.044%), neg=0, invalid=96777 iter 0, gcam->neg = 4 after 32 iterations, nbhd size=4, neg = 0 0680: dt=2.800000, rms=0.387 (0.050%), neg=0, invalid=96777 0681: dt=2.800000, rms=0.387 (0.050%), neg=0, invalid=96777 iter 0, gcam->neg = 19 after 200 iterations, nbhd size=2, neg = 1 starting rms=0.003, neg=1, removing folds in lattice.... iter 1, dt=0.000219: new neg 0, old_neg 1, delta 1, rms=0.003 (18.669%) 0682: dt=38.400000, rms=0.387 (0.091%), neg=0, invalid=96777 iter 0, gcam->neg = 20 after 200 iterations, nbhd size=2, neg = 1 starting rms=0.003, neg=1, removing folds in lattice.... iter 1, dt=0.000219: new neg 0, old_neg 1, delta 1, rms=0.003 (19.967%) 0683: dt=44.800000, rms=0.386 (0.088%), neg=0, invalid=96777 setting smoothness coefficient to 0.400 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.389, neg=0, invalid=96777 iter 0, gcam->neg = 18 after 200 iterations, nbhd size=3, neg = 2 starting rms=0.003, neg=2, removing folds in lattice.... iter 1, dt=0.000219: new neg 0, old_neg 2, delta 2, rms=0.002 (24.450%) 0684: dt=2.487805, rms=0.389 (0.044%), neg=0, invalid=96777 iter 0, gcam->neg = 17 after 200 iterations, nbhd size=3, neg = 2 starting rms=0.003, neg=2, removing folds in lattice.... iter 1, dt=0.000219: new neg 0, old_neg 2, delta 2, rms=0.002 (24.929%) 0685: dt=2.372093, rms=0.389 (0.032%), neg=0, invalid=96777 iter 0, gcam->neg = 17 after 200 iterations, nbhd size=3, neg = 2 starting rms=0.003, neg=2, removing folds in lattice.... iter 1, dt=0.000219: new neg 0, old_neg 2, delta 2, rms=0.002 (25.782%) 0686: dt=2.372093, rms=0.389 (0.019%), neg=0, invalid=96777 iter 0, gcam->neg = 20 after 33 iterations, nbhd size=4, neg = 0 0687: dt=2.372093, rms=0.389 (0.025%), neg=0, invalid=96777 iter 0, gcam->neg = 113 after 48 iterations, nbhd size=4, neg = 0 0688: dt=2.372093, rms=0.389 (-0.052%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.389, neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0689: dt=0.216000, rms=0.389 (0.002%), neg=0, invalid=96777 iter 0, gcam->neg = 5 after 200 iterations, nbhd size=4, neg = 2 starting rms=0.003, neg=2, removing folds in lattice.... iter 1, dt=0.000219: new neg 0, old_neg 2, delta 2, rms=0.002 (22.771%) 0690: dt=0.720000, rms=0.389 (0.019%), neg=0, invalid=96777 iter 0, gcam->neg = 45 after 200 iterations, nbhd size=1, neg = 1 starting rms=0.002, neg=1, removing folds in lattice.... iter 1, dt=0.000219: new neg 0, old_neg 1, delta 1, rms=0.002 (23.399%) 0691: dt=7.314286, rms=0.387 (0.322%), neg=0, invalid=96777 iter 0, gcam->neg = 39 after 200 iterations, nbhd size=2, neg = 1 starting rms=0.002, neg=1, removing folds in lattice.... iter 1, dt=0.000219: new neg 0, old_neg 1, delta 1, rms=0.002 (17.885%) 0692: dt=6.912000, rms=0.387 (0.114%), neg=0, invalid=96777 iter 0, gcam->neg = 77 after 200 iterations, nbhd size=1, neg = 1 starting rms=0.002, neg=1, removing folds in lattice.... iter 1, dt=0.000500: new neg 0, old_neg 1, delta 1, rms=0.002 (20.249%) 0693: dt=6.912000, rms=0.387 (0.098%), neg=0, invalid=96777 iter 0, gcam->neg = 45 after 82 iterations, nbhd size=3, neg = 0 0694: dt=6.912000, rms=0.386 (0.113%), neg=0, invalid=96777 iter 0, gcam->neg = 418 after 34 iterations, nbhd size=2, neg = 0 0695: dt=6.912000, rms=0.386 (-0.090%), neg=0, invalid=96777 setting smoothness coefficient to 1.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.392, neg=0, invalid=96777 0696: dt=0.000094, rms=0.392 (0.000%), neg=0, invalid=96777 0697: dt=0.000000, rms=0.392 (0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.392, neg=0, invalid=96777 0698: dt=0.000000, rms=0.392 (0.000%), neg=0, invalid=96777 resetting metric properties... setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.382, neg=0, invalid=96777 iter 0, gcam->neg = 453 after 45 iterations, nbhd size=4, neg = 0 0699: dt=0.989426, rms=0.370 (3.341%), neg=0, invalid=96777 0700: dt=0.000000, rms=0.370 (0.000%), neg=0, invalid=96777 iter 0, gcam->neg = 411 after 40 iterations, nbhd size=3, neg = 0 0701: dt=0.050000, rms=0.370 (-0.256%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.370, neg=0, invalid=96777 0702: dt=0.000000, rms=0.370 (0.000%), neg=0, invalid=96777 writing output transformation to transforms/talairach.m3z... GCAMwrite registration took 2 hours, 23 minutes and 56 seconds. #-------------------------------------- #@# CA Reg Inv Thu Dec 10 22:39:12 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri mri_ca_register -invert-and-save transforms/talairach.m3z Loading, Inverting, Saving, Exiting ... Reading transforms/talairach.m3z Inverting GCAM Saving inverse #-------------------------------------- #@# Remove Neck Thu Dec 10 22:39:46 UTC 2015 mri_remove_neck -radius 25 nu.mgz transforms/talairach.m3z /cdrom/Marco/freesurfer/average/RB_all_2008-03-26.gca nu_noneck.mgz erasing everything more than 25 mm from possible brain reading atlas '/cdrom/Marco/freesurfer/average/RB_all_2008-03-26.gca'... reading input volume 'nu.mgz'... reading transform 'transforms/talairach.m3z'... removing structures at least 25 mm from brain... 11379874 nonbrain voxels erased writing output to nu_noneck.mgz... nonbrain removal took 0 minutes and 50 seconds. #-------------------------------------- #@# SkullLTA Thu Dec 10 22:40:36 UTC 2015 mri_em_register -skull -t transforms/talairach.lta nu_noneck.mgz /cdrom/Marco/freesurfer/average/RB_all_withskull_2008-03-26.gca transforms/talairach_with_skull_2.lta ======= NUMBER OF OPENMP THREADS = 1 ======= aligning to atlas containing skull, setting unknown_nbr_spacing = 5 using previously computed transform transforms/talairach.lta reading 1 input volumes... logging results to talairach_with_skull_2.log reading '/cdrom/Marco/freesurfer/average/RB_all_withskull_2008-03-26.gca'... average std = 23.1 using min determinant for regularization = 53.4 0 singular and 5702 ill-conditioned covariance matrices regularized reading 'nu_noneck.mgz'... freeing gibbs priors...done. bounding unknown intensity as < 20.2 or > 943.7 total sample mean = 92.0 (1443 zeros) ************************************************ spacing=8, using 3481 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 3481, passno 0, spacing 8 resetting wm mean[0]: 117 --> 126 resetting gm mean[0]: 74 --> 74 input volume #1 is the most T1-like using real data threshold=11.0 skull bounding box = (48, 52, 20) --> (205, 213, 213) using (100, 106, 117) as brain centroid... mean wm in atlas = 126, using box (81,86,93) --> (119, 125,140) to find MRI wm before smoothing, mri peak at 109 after smoothing, mri peak at 108, scaling input intensities by 1.167 scaling channel 0 by 1.16667 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-4.3, old_max_log_p =-4.2 (thresh=-4.2) 1.142 -0.059 -0.033 -6.961; 0.072 1.309 0.212 -82.604; 0.026 -0.194 1.144 3.535; 0.000 0.000 0.000 1.000; reducing scale to 0.2500 **************************************** Nine parameter search. iteration 1 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.3 (thresh=-4.3) 1.117 -0.041 -0.102 3.226; 0.072 1.269 0.284 -88.787; 0.096 -0.269 1.082 13.020; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 2 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.134 -0.083 -0.114 8.090; 0.110 1.234 0.309 -89.675; 0.092 -0.304 1.052 21.552; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.134 -0.083 -0.114 8.090; 0.110 1.234 0.309 -89.675; 0.092 -0.304 1.052 21.552; 0.000 0.000 0.000 1.000; reducing scale to 0.0625 **************************************** Nine parameter search. iteration 4 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.136 -0.071 -0.120 6.886; 0.102 1.229 0.328 -90.065; 0.099 -0.325 1.044 23.680; 0.000 0.000 0.000 1.000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 3481 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.13591 -0.07064 -0.12046 6.88554; 0.10211 1.22918 0.32751 -90.06470; 0.09889 -0.32485 1.04431 23.67968; 0.00000 0.00000 0.00000 1.00000; nsamples 3481 Quasinewton: input matrix 1.13591 -0.07064 -0.12046 6.88554; 0.10211 1.22918 0.32751 -90.06470; 0.09889 -0.32485 1.04431 23.67968; 0.00000 0.00000 0.00000 1.00000; IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 4 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 006: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.136 -0.071 -0.120 6.886; 0.102 1.229 0.328 -90.065; 0.099 -0.325 1.044 23.680; 0.000 0.000 0.000 1.000; pass 1, spacing 8: log(p) = -4.2 (old=-4.2) transform before final EM align: 1.136 -0.071 -0.120 6.886; 0.102 1.229 0.328 -90.065; 0.099 -0.325 1.044 23.680; 0.000 0.000 0.000 1.000; ************************************************** EM alignment process ... Computing final MAP estimate using 382743 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.13591 -0.07064 -0.12046 6.88554; 0.10211 1.22918 0.32751 -90.06470; 0.09889 -0.32485 1.04431 23.67968; 0.00000 0.00000 0.00000 1.00000; nsamples 382743 Quasinewton: input matrix 1.13591 -0.07064 -0.12046 6.88554; 0.10211 1.22918 0.32751 -90.06470; 0.09889 -0.32485 1.04431 23.67968; 0.00000 0.00000 0.00000 1.00000; IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 6 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 008: -log(p) = 4.6 tol 0.000000 final transform: 1.136 -0.071 -0.120 6.886; 0.102 1.229 0.328 -90.065; 0.099 -0.325 1.044 23.680; 0.000 0.000 0.000 1.000; writing output transformation to transforms/talairach_with_skull_2.lta... registration took 15 minutes and 18 seconds. #-------------------------------------- #@# SubCort Seg Thu Dec 10 22:55:54 UTC 2015 mri_ca_label -align norm.mgz transforms/talairach.m3z /cdrom/Marco/freesurfer/average/RB_all_2008-03-26.gca aseg.auto_noCCseg.mgz sysname Linux hostname ubuntu machine x86_64 setenv SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects cd /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri mri_ca_label -align norm.mgz transforms/talairach.m3z /cdrom/Marco/freesurfer/average/RB_all_2008-03-26.gca aseg.auto_noCCseg.mgz renormalizing sequences with structure alignment, equivalent to: -renormalize -renormalize_mean 0.500 -regularize 0.500 reading 1 input volumes... reading classifier array from /cdrom/Marco/freesurfer/average/RB_all_2008-03-26.gca... reading input volume from norm.mgz... average std[0] = 6.9 reading transform from transforms/talairach.m3z... Atlas used for the 3D morph was /cdrom/Marco/freesurfer/average/RB_all_2008-03-26.gca average std = 6.9 using min determinant for regularization = 4.7 0 singular and 0 ill-conditioned covariance matrices regularized labeling volume... renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.15151 (27) mri peak = 0.14221 (24) Left_Lateral_Ventricle (4): linear fit = 0.81 x + 0.0 (5276 voxels, overlap=0.579) Left_Lateral_Ventricle (4): linear fit = 0.81 x + 0.0 (5276 voxels, peak = 22), gca=22.0 gca peak = 0.14982 (20) mri peak = 0.12092 (25) Right_Lateral_Ventricle (43): linear fit = 1.08 x + 0.0 (4721 voxels, overlap=0.875) Right_Lateral_Ventricle (43): linear fit = 1.08 x + 0.0 (4721 voxels, peak = 22), gca=21.5 gca peak = 0.28003 (97) mri peak = 0.07589 (105) Right_Pallidum (52): linear fit = 1.07 x + 0.0 (221 voxels, overlap=0.994) Right_Pallidum (52): linear fit = 1.07 x + 0.0 (221 voxels, peak = 103), gca=103.3 gca peak = 0.18160 (96) mri peak = 0.10544 (103) Left_Pallidum (13): linear fit = 1.07 x + 0.0 (285 voxels, overlap=0.776) Left_Pallidum (13): linear fit = 1.07 x + 0.0 (285 voxels, peak = 102), gca=102.2 gca peak = 0.27536 (62) mri peak = 0.08079 (78) Right_Hippocampus (53): linear fit = 1.24 x + 0.0 (656 voxels, overlap=0.021) Right_Hippocampus (53): linear fit = 1.24 x + 0.0 (656 voxels, peak = 77), gca=76.6 gca peak = 0.32745 (63) mri peak = 0.08357 (81) Left_Hippocampus (17): linear fit = 1.20 x + 0.0 (706 voxels, overlap=0.043) Left_Hippocampus (17): linear fit = 1.20 x + 0.0 (706 voxels, peak = 75), gca=75.3 gca peak = 0.08597 (105) mri peak = 0.12740 (109) Right_Cerebral_White_Matter (41): linear fit = 1.02 x + 0.0 (30480 voxels, overlap=0.607) Right_Cerebral_White_Matter (41): linear fit = 1.02 x + 0.0 (30480 voxels, peak = 108), gca=107.6 gca peak = 0.09209 (106) mri peak = 0.12019 (107) Left_Cerebral_White_Matter (2): linear fit = 1.01 x + 0.0 (28430 voxels, overlap=0.689) Left_Cerebral_White_Matter (2): linear fit = 1.01 x + 0.0 (28430 voxels, peak = 108), gca=107.6 gca peak = 0.07826 (63) mri peak = 0.05502 (84) Left_Cerebral_Cortex (3): linear fit = 1.33 x + 0.0 (23557 voxels, overlap=0.004) Left_Cerebral_Cortex (3): linear fit = 1.33 x + 0.0 (23557 voxels, peak = 83), gca=83.5 gca peak = 0.08598 (64) mri peak = 0.05517 (84) Right_Cerebral_Cortex (42): linear fit = 1.30 x + 0.0 (23136 voxels, overlap=0.001) Right_Cerebral_Cortex (42): linear fit = 1.30 x + 0.0 (23136 voxels, peak = 84), gca=83.5 gca peak = 0.24164 (71) mri peak = 0.14341 (89) Right_Caudate (50): linear fit = 1.23 x + 0.0 (520 voxels, overlap=0.024) Right_Caudate (50): linear fit = 1.23 x + 0.0 (520 voxels, peak = 87), gca=87.0 gca peak = 0.18227 (75) mri peak = 0.14132 (93) Left_Caudate (11): linear fit = 1.21 x + 0.0 (661 voxels, overlap=0.019) Left_Caudate (11): linear fit = 1.21 x + 0.0 (661 voxels, peak = 90), gca=90.4 gca peak = 0.10629 (62) mri peak = 0.06058 (77) Left_Cerebellum_Cortex (8): linear fit = 1.27 x + 0.0 (18852 voxels, overlap=0.001) Left_Cerebellum_Cortex (8): linear fit = 1.27 x + 0.0 (18852 voxels, peak = 79), gca=79.0 gca peak = 0.11668 (59) mri peak = 0.06159 (78) Right_Cerebellum_Cortex (47): linear fit = 1.28 x + 0.0 (19070 voxels, overlap=0.001) Right_Cerebellum_Cortex (47): linear fit = 1.28 x + 0.0 (19070 voxels, peak = 76), gca=75.8 gca peak = 0.17849 (88) mri peak = 0.09581 (96) Left_Cerebellum_White_Matter (7): linear fit = 1.08 x + 0.0 (3227 voxels, overlap=0.816) Left_Cerebellum_White_Matter (7): linear fit = 1.08 x + 0.0 (3227 voxels, peak = 95), gca=94.6 gca peak = 0.16819 (86) mri peak = 0.09563 (95) Right_Cerebellum_White_Matter (46): linear fit = 1.08 x + 0.0 (3517 voxels, overlap=0.592) Right_Cerebellum_White_Matter (46): linear fit = 1.08 x + 0.0 (3517 voxels, peak = 92), gca=92.5 gca peak = 0.41688 (64) mri peak = 0.08889 (78) Left_Amygdala (18): linear fit = 1.20 x + 0.0 (278 voxels, overlap=0.068) Left_Amygdala (18): linear fit = 1.20 x + 0.0 (278 voxels, peak = 76), gca=76.5 gca peak = 0.42394 (62) mri peak = 0.07273 (72) Right_Amygdala (54): linear fit = 1.13 x + 0.0 (245 voxels, overlap=0.073) Right_Amygdala (54): linear fit = 1.13 x + 0.0 (245 voxels, peak = 70), gca=70.4 gca peak = 0.10041 (96) mri peak = 0.09809 (95) Left_Thalamus_Proper (10): linear fit = 1.01 x + 0.0 (3353 voxels, overlap=0.820) Left_Thalamus_Proper (10): linear fit = 1.01 x + 0.0 (3353 voxels, peak = 97), gca=97.4 gca peak = 0.13978 (88) mri peak = 0.08589 (95) Right_Thalamus_Proper (49): linear fit = 1.09 x + 0.0 (2865 voxels, overlap=0.585) Right_Thalamus_Proper (49): linear fit = 1.09 x + 0.0 (2865 voxels, peak = 95), gca=95.5 gca peak = 0.08514 (81) mri peak = 0.09079 (92) Left_Putamen (12): linear fit = 1.11 x + 0.0 (1100 voxels, overlap=0.335) Left_Putamen (12): linear fit = 1.11 x + 0.0 (1100 voxels, peak = 90), gca=89.5 gca peak = 0.09624 (82) mri peak = 0.08708 (93) Right_Putamen (51): linear fit = 1.16 x + 0.0 (1042 voxels, overlap=0.326) Right_Putamen (51): linear fit = 1.16 x + 0.0 (1042 voxels, peak = 96), gca=95.5 gca peak = 0.07543 (88) mri peak = 0.06511 (92) Brain_Stem (16): linear fit = 1.09 x + 0.0 (9141 voxels, overlap=0.538) Brain_Stem (16): linear fit = 1.09 x + 0.0 (9141 voxels, peak = 95), gca=95.5 gca peak = 0.12757 (95) mri peak = 0.08327 (105) Right_VentralDC (60): linear fit = 1.10 x + 0.0 (767 voxels, overlap=0.525) Right_VentralDC (60): linear fit = 1.10 x + 0.0 (767 voxels, peak = 104), gca=104.0 gca peak = 0.17004 (92) mri peak = 0.09561 (104) Left_VentralDC (28): linear fit = 1.11 x + 0.0 (831 voxels, overlap=0.453) Left_VentralDC (28): linear fit = 1.11 x + 0.0 (831 voxels, peak = 102), gca=101.7 gca peak = 0.21361 (36) mri peak = 0.13416 (26) Third_Ventricle (14): linear fit = 0.75 x + 0.0 (64 voxels, overlap=0.124) Third_Ventricle (14): linear fit = 0.75 x + 0.0 (64 voxels, peak = 27), gca=26.8 gca peak = 0.26069 (23) mri peak = 0.12212 (26) Fourth_Ventricle (15): linear fit = 1.07 x + 0.0 (148 voxels, overlap=0.517) Fourth_Ventricle (15): linear fit = 1.07 x + 0.0 (148 voxels, peak = 24), gca=24.5 gca peak Unknown = 0.94427 ( 0) gca peak Left_Inf_Lat_Vent = 0.31795 (35) gca peak CSF = 0.14367 (38) gca peak Left_Accumbens_area = 0.57033 (70) gca peak Left_undetermined = 1.00000 (35) gca peak Left_vessel = 0.65201 (62) gca peak Left_choroid_plexus = 0.09084 (48) gca peak Right_Inf_Lat_Vent = 0.31129 (32) gca peak Right_Accumbens_area = 0.30219 (72) gca peak Right_vessel = 0.83418 (60) gca peak Right_choroid_plexus = 0.10189 (48) gca peak Fifth_Ventricle = 0.72939 (42) gca peak WM_hypointensities = 0.14821 (82) gca peak non_WM_hypointensities = 0.10354 (53) gca peak Optic_Chiasm = 0.34849 (76) not using caudate to estimate GM means estimating mean gm scale to be 1.23 x + 0.0 estimating mean wm scale to be 1.02 x + 0.0 estimating mean csf scale to be 0.93 x + 0.0 saving intensity scales to aseg.auto_noCCseg.label_intensities.txt renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.17515 (22) mri peak = 0.14221 (24) Left_Lateral_Ventricle (4): linear fit = 1.02 x + 0.0 (5276 voxels, overlap=0.930) Left_Lateral_Ventricle (4): linear fit = 1.02 x + 0.0 (5276 voxels, peak = 23), gca=22.5 gca peak = 0.18355 (22) mri peak = 0.12092 (25) Right_Lateral_Ventricle (43): linear fit = 1.01 x + 0.0 (4721 voxels, overlap=0.807) Right_Lateral_Ventricle (43): linear fit = 1.01 x + 0.0 (4721 voxels, peak = 22), gca=22.3 gca peak = 0.24920 (104) mri peak = 0.07589 (105) Right_Pallidum (52): linear fit = 1.00 x + 0.0 (221 voxels, overlap=1.029) Right_Pallidum (52): linear fit = 1.00 x + 0.0 (221 voxels, peak = 104), gca=104.0 gca peak = 0.17600 (103) mri peak = 0.10544 (103) Left_Pallidum (13): linear fit = 1.00 x + 0.0 (285 voxels, overlap=0.904) Left_Pallidum (13): linear fit = 1.00 x + 0.0 (285 voxels, peak = 102), gca=102.5 gca peak = 0.25437 (77) mri peak = 0.08079 (78) Right_Hippocampus (53): linear fit = 1.00 x + 0.0 (656 voxels, overlap=1.000) Right_Hippocampus (53): linear fit = 1.00 x + 0.0 (656 voxels, peak = 77), gca=77.0 gca peak = 0.26800 (75) mri peak = 0.08357 (81) Left_Hippocampus (17): linear fit = 1.00 x + 0.0 (706 voxels, overlap=1.004) Left_Hippocampus (17): linear fit = 1.00 x + 0.0 (706 voxels, peak = 75), gca=75.0 gca peak = 0.08369 (108) mri peak = 0.12740 (109) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (30480 voxels, overlap=0.672) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (30480 voxels, peak = 108), gca=108.0 gca peak = 0.08731 (107) mri peak = 0.12019 (107) Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (28430 voxels, overlap=0.700) Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (28430 voxels, peak = 107), gca=107.0 gca peak = 0.05910 (83) mri peak = 0.05502 (84) Left_Cerebral_Cortex (3): linear fit = 0.99 x + 0.0 (23557 voxels, overlap=0.870) Left_Cerebral_Cortex (3): linear fit = 0.99 x + 0.0 (23557 voxels, peak = 82), gca=81.8 gca peak = 0.06852 (83) mri peak = 0.05517 (84) Right_Cerebral_Cortex (42): linear fit = 1.00 x + 0.0 (23136 voxels, overlap=0.887) Right_Cerebral_Cortex (42): linear fit = 1.00 x + 0.0 (23136 voxels, peak = 83), gca=83.0 gca peak = 0.22049 (90) mri peak = 0.14341 (89) Right_Caudate (50): linear fit = 1.01 x + 0.0 (520 voxels, overlap=1.003) Right_Caudate (50): linear fit = 1.01 x + 0.0 (520 voxels, peak = 91), gca=91.3 gca peak = 0.13099 (90) mri peak = 0.14132 (93) Left_Caudate (11): linear fit = 1.00 x + 0.0 (661 voxels, overlap=0.730) Left_Caudate (11): linear fit = 1.00 x + 0.0 (661 voxels, peak = 90), gca=90.4 gca peak = 0.08464 (78) mri peak = 0.06058 (77) Left_Cerebellum_Cortex (8): linear fit = 1.00 x + 0.0 (18852 voxels, overlap=0.957) Left_Cerebellum_Cortex (8): linear fit = 1.00 x + 0.0 (18852 voxels, peak = 78), gca=77.6 gca peak = 0.09646 (76) mri peak = 0.06159 (78) Right_Cerebellum_Cortex (47): linear fit = 1.00 x + 0.0 (19070 voxels, overlap=0.944) Right_Cerebellum_Cortex (47): linear fit = 1.00 x + 0.0 (19070 voxels, peak = 76), gca=75.6 gca peak = 0.17137 (94) mri peak = 0.09581 (96) Left_Cerebellum_White_Matter (7): linear fit = 0.99 x + 0.0 (3227 voxels, overlap=0.995) Left_Cerebellum_White_Matter (7): linear fit = 0.99 x + 0.0 (3227 voxels, peak = 93), gca=92.6 gca peak = 0.15715 (93) mri peak = 0.09563 (95) Right_Cerebellum_White_Matter (46): linear fit = 1.00 x + 0.0 (3517 voxels, overlap=0.983) Right_Cerebellum_White_Matter (46): linear fit = 1.00 x + 0.0 (3517 voxels, peak = 93), gca=92.5 gca peak = 0.32443 (76) mri peak = 0.08889 (78) Left_Amygdala (18): linear fit = 1.01 x + 0.0 (278 voxels, overlap=0.942) Left_Amygdala (18): linear fit = 1.01 x + 0.0 (278 voxels, peak = 77), gca=77.1 gca peak = 0.29079 (70) mri peak = 0.07273 (72) Right_Amygdala (54): linear fit = 1.03 x + 0.0 (245 voxels, overlap=1.014) Right_Amygdala (54): linear fit = 1.03 x + 0.0 (245 voxels, peak = 72), gca=72.4 gca peak = 0.10053 (97) mri peak = 0.09809 (95) Left_Thalamus_Proper (10): linear fit = 1.00 x + 0.0 (3353 voxels, overlap=0.876) Left_Thalamus_Proper (10): linear fit = 1.00 x + 0.0 (3353 voxels, peak = 97), gca=97.5 gca peak = 0.11561 (95) mri peak = 0.08589 (95) Right_Thalamus_Proper (49): linear fit = 1.00 x + 0.0 (2865 voxels, overlap=0.917) Right_Thalamus_Proper (49): linear fit = 1.00 x + 0.0 (2865 voxels, peak = 95), gca=95.5 gca peak = 0.08211 (91) mri peak = 0.09079 (92) Left_Putamen (12): linear fit = 1.02 x + 0.0 (1100 voxels, overlap=0.830) Left_Putamen (12): linear fit = 1.02 x + 0.0 (1100 voxels, peak = 93), gca=93.3 gca peak = 0.08516 (96) mri peak = 0.08708 (93) Right_Putamen (51): linear fit = 0.98 x + 0.0 (1042 voxels, overlap=0.844) Right_Putamen (51): linear fit = 0.98 x + 0.0 (1042 voxels, peak = 94), gca=93.6 gca peak = 0.07273 (93) mri peak = 0.06511 (92) Brain_Stem (16): linear fit = 1.00 x + 0.0 (9141 voxels, overlap=0.804) Brain_Stem (16): linear fit = 1.00 x + 0.0 (9141 voxels, peak = 93), gca=93.5 gca peak = 0.11384 (100) mri peak = 0.08327 (105) Right_VentralDC (60): linear fit = 1.01 x + 0.0 (767 voxels, overlap=0.826) Right_VentralDC (60): linear fit = 1.01 x + 0.0 (767 voxels, peak = 102), gca=101.5 gca peak = 0.13138 (102) mri peak = 0.09561 (104) Left_VentralDC (28): linear fit = 1.00 x + 0.0 (831 voxels, overlap=0.885) Left_VentralDC (28): linear fit = 1.00 x + 0.0 (831 voxels, peak = 102), gca=102.0 gca peak = 0.25862 (28) mri peak = 0.13416 (26) Third_Ventricle (14): linear fit = 0.99 x + 0.0 (64 voxels, overlap=1.006) Third_Ventricle (14): linear fit = 0.99 x + 0.0 (64 voxels, peak = 28), gca=27.6 gca peak = 0.20195 (25) mri peak = 0.12212 (26) Fourth_Ventricle (15): linear fit = 0.99 x + 0.0 (148 voxels, overlap=0.670) Fourth_Ventricle (15): linear fit = 0.99 x + 0.0 (148 voxels, peak = 25), gca=24.6 gca peak Unknown = 0.94427 ( 0) gca peak Left_Inf_Lat_Vent = 0.26325 (42) gca peak CSF = 0.21897 (36) gca peak Left_Accumbens_area = 0.42698 (84) gca peak Left_undetermined = 1.00000 (35) gca peak Left_vessel = 0.63638 (62) gca peak Left_choroid_plexus = 0.09084 (48) gca peak Right_Inf_Lat_Vent = 0.24786 (39) gca peak Right_Accumbens_area = 0.31039 (88) gca peak Right_vessel = 0.83418 (60) gca peak Right_choroid_plexus = 0.10189 (48) gca peak Fifth_Ventricle = 0.54604 (39) gca peak WM_hypointensities = 0.17134 (83) gca peak non_WM_hypointensities = 0.12111 (54) gca peak Optic_Chiasm = 0.34195 (76) not using caudate to estimate GM means estimating mean gm scale to be 1.01 x + 0.0 estimating mean wm scale to be 1.00 x + 0.0 estimating mean csf scale to be 1.00 x + 0.0 Right_Pallidum too bright - rescaling by 1.003 (from 1.000) to 104.3 (was 104.0) saving intensity scales to aseg.auto_noCCseg.label_intensities.txt saving sequentially combined intensity scales to aseg.auto_noCCseg.label_intensities.txt 52017 gm and wm labels changed (%18 to gray, %82 to white out of all changed labels) 407 hippocampal voxels changed. 1 amygdala voxels changed. pass 1: 83497 changed. image ll: -2.165, PF=1.000 pass 2: 13950 changed. image ll: -2.161, PF=1.000 pass 3: 4235 changed. writing labeled volume to aseg.auto_noCCseg.mgz... auto-labeling took 11 minutes and 47 seconds. mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/transforms/cc_up.lta T40_OM_Post will read input aseg from aseg.auto_noCCseg.mgz writing aseg with cc labels to aseg.auto.mgz will write lta as /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/transforms/cc_up.lta reading aseg from /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/aseg.auto_noCCseg.mgz reading norm from /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/norm.mgz 47259 voxels in left wm, 40717 in right wm, xrange [120, 132] searching rotation angles z=[-6 8], y=[-10 4] searching scale 1 Z rot -5.9 searching scale 1 Z rot -5.7 searching scale 1 Z rot -5.4 searching scale 1 Z rot -5.2 searching scale 1 Z rot -4.9 searching scale 1 Z rot -4.7 searching scale 1 Z rot -4.4 searching scale 1 Z rot -4.2 searching scale 1 Z rot -3.9 searching scale 1 Z rot -3.7 searching scale 1 Z rot -3.4 searching scale 1 Z rot -3.2 searching scale 1 Z rot -2.9 searching scale 1 Z rot -2.7 searching scale 1 Z rot -2.4 searching scale 1 Z rot -2.2 searching scale 1 Z rot -1.9 searching scale 1 Z rot -1.7 searching scale 1 Z rot -1.4 searching scale 1 Z rot -1.2 searching scale 1 Z rot -0.9 searching scale 1 Z rot -0.7 searching scale 1 Z rot -0.4 searching scale 1 Z rot -0.2 searching scale 1 Z rot 0.1 searching scale 1 Z rot 0.3 searching scale 1 Z rot 0.6 searching scale 1 Z rot 0.8 searching scale 1 Z rot 1.1 searching scale 1 Z rot 1.3 searching scale 1 Z rot 1.6 searching scale 1 Z rot 1.8 searching scale 1 Z rot 2.1 searching scale 1 Z rot 2.3 searching scale 1 Z rot 2.6 searching scale 1 Z rot 2.8 searching scale 1 Z rot 3.1 searching scale 1 Z rot 3.3 searching scale 1 Z rot 3.6 searching scale 1 Z rot 3.8 searching scale 1 Z rot 4.1 searching scale 1 Z rot 4.3 searching scale 1 Z rot 4.6 searching scale 1 Z rot 4.8 searching scale 1 Z rot 5.1 searching scale 1 Z rot 5.3 searching scale 1 Z rot 5.6 searching scale 1 Z rot 5.8 searching scale 1 Z rot 6.1 searching scale 1 Z rot 6.3 searching scale 1 Z rot 6.6 searching scale 1 Z rot 6.8 searching scale 1 Z rot 7.1 searching scale 1 Z rot 7.3 searching scale 1 Z rot 7.6 searching scale 1 Z rot 7.8 global minimum found at slice 124.8, rotations (-2.97, 1.08) final transformation (x=124.8, yr=-2.971, zr=1.076): 0.998 -0.019 -0.052 10.694; 0.019 1.000 -0.001 7.776; 0.052 0.000 0.999 23.664; 0.000 0.000 0.000 1.000; updating x range to be [126, 130] in xformed coordinates best xformed slice 128 cc center is found at 128 151 122 eigenvectors: 0.002 -0.005 1.000; -0.205 -0.979 -0.004; 0.979 -0.205 -0.003; writing aseg with callosum to /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/aseg.auto.mgz... corpus callosum matter segmentation took 0.7 minutes #-------------------------------------- #@# Merge ASeg Thu Dec 10 23:08:23 UTC 2015 cp aseg.auto.mgz aseg.mgz #-------------------------------------------- #@# Intensity Normalization2 Thu Dec 10 23:08:23 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri mri_normalize -aseg aseg.mgz -mask brainmask.mgz norm.mgz brain.mgz using segmentation for initial intensity normalization using MR volume brainmask.mgz to mask input volume... reading from norm.mgz... Reading aseg aseg.mgz normalizing image... processing with aseg removing outliers in the aseg WM... 1830 control points removed Building bias image building Voronoi diagram... performing soap bubble smoothing, sigma = 0... Smoothing with sigma 8 Applying bias correction building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 111 white matter peak found at 109 gm peak at 87 (87), valley at 60 (60) csf peak at 28, setting threshold to 67 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 111 white matter peak found at 109 gm peak at 84 (84), valley at 59 (59) csf peak at 28, setting threshold to 65 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to brain.mgz 3D bias adjustment took 2 minutes and 27 seconds. #-------------------------------------------- #@# Mask BFS Thu Dec 10 23:10:51 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri mri_mask -T 5 brain.mgz brainmask.mgz brain.finalsurfs.mgz threshold mask volume at 5 DoAbs = 0 Found 1483746 voxels in mask (pct= 8.84) Writing masked volume to brain.finalsurfs.mgz...done. #-------------------------------------------- #@# WM Segmentation Thu Dec 10 23:10:52 UTC 2015 mri_segment brain.mgz wm.seg.mgz doing initial intensity segmentation... using local statistics to label ambiguous voxels... computing class statistics for intensity windows... WM (104.0): 104.1 +- 5.6 [80.0 --> 125.0] GM (75.0) : 72.4 +- 14.5 [30.0 --> 96.0] setting bottom of white matter range to 86.9 setting top of gray matter range to 101.4 doing initial intensity segmentation... using local statistics to label ambiguous voxels... using local geometry to label remaining ambiguous voxels... reclassifying voxels using Gaussian border classifier... removing voxels with positive offset direction... smoothing T1 volume with sigma = 0.250 removing 1-dimensional structures... 8813 sparsely connected voxels removed... thickening thin strands.... 20 segments, 4252 filled 2377 bright non-wm voxels segmented. 5348 diagonally connected voxels added... white matter segmentation took 1.4 minutes writing output to wm.seg.mgz... mri_edit_wm_with_aseg -keep-in wm.seg.mgz brain.mgz aseg.mgz wm.asegedit.mgz preserving editing changes in input volume... auto filling took 0.40 minutes reading wm segmentation from wm.seg.mgz... 178 voxels added to wm to prevent paths from MTL structures to cortex 3845 additional wm voxels added 0 additional wm voxels added SEG EDIT: 78923 voxels turned on, 27036 voxels turned off. propagating editing to output volume from wm.seg.mgz 115,126,128 old 0 new 0 115,126,128 old 0 new 0 writing edited volume to wm.asegedit.mgz.... mri_pretess wm.asegedit.mgz wm norm.mgz wm.mgz Iteration Number : 1 pass 1 (xy+): 28 found - 28 modified | TOTAL: 28 pass 2 (xy+): 0 found - 28 modified | TOTAL: 28 pass 1 (xy-): 27 found - 27 modified | TOTAL: 55 pass 2 (xy-): 0 found - 27 modified | TOTAL: 55 pass 1 (yz+): 37 found - 37 modified | TOTAL: 92 pass 2 (yz+): 0 found - 37 modified | TOTAL: 92 pass 1 (yz-): 28 found - 28 modified | TOTAL: 120 pass 2 (yz-): 0 found - 28 modified | TOTAL: 120 pass 1 (xz+): 20 found - 20 modified | TOTAL: 140 pass 2 (xz+): 0 found - 20 modified | TOTAL: 140 pass 1 (xz-): 32 found - 32 modified | TOTAL: 172 pass 2 (xz-): 0 found - 32 modified | TOTAL: 172 Iteration Number : 1 pass 1 (+++): 31 found - 31 modified | TOTAL: 31 pass 2 (+++): 0 found - 31 modified | TOTAL: 31 pass 1 (+++): 52 found - 52 modified | TOTAL: 83 pass 2 (+++): 0 found - 52 modified | TOTAL: 83 pass 1 (+++): 30 found - 30 modified | TOTAL: 113 pass 2 (+++): 0 found - 30 modified | TOTAL: 113 pass 1 (+++): 19 found - 19 modified | TOTAL: 132 pass 2 (+++): 0 found - 19 modified | TOTAL: 132 Iteration Number : 1 pass 1 (++): 102 found - 102 modified | TOTAL: 102 pass 2 (++): 0 found - 102 modified | TOTAL: 102 pass 1 (+-): 99 found - 99 modified | TOTAL: 201 pass 2 (+-): 0 found - 99 modified | TOTAL: 201 pass 1 (--): 100 found - 100 modified | TOTAL: 301 pass 2 (--): 0 found - 100 modified | TOTAL: 301 pass 1 (-+): 115 found - 115 modified | TOTAL: 416 pass 2 (-+): 0 found - 115 modified | TOTAL: 416 Iteration Number : 2 pass 1 (xy+): 18 found - 18 modified | TOTAL: 18 pass 2 (xy+): 0 found - 18 modified | TOTAL: 18 pass 1 (xy-): 15 found - 15 modified | TOTAL: 33 pass 2 (xy-): 0 found - 15 modified | TOTAL: 33 pass 1 (yz+): 7 found - 7 modified | TOTAL: 40 pass 2 (yz+): 0 found - 7 modified | TOTAL: 40 pass 1 (yz-): 12 found - 12 modified | TOTAL: 52 pass 2 (yz-): 0 found - 12 modified | TOTAL: 52 pass 1 (xz+): 12 found - 12 modified | TOTAL: 64 pass 2 (xz+): 0 found - 12 modified | TOTAL: 64 pass 1 (xz-): 12 found - 12 modified | TOTAL: 76 pass 2 (xz-): 0 found - 12 modified | TOTAL: 76 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 2 found - 2 modified | TOTAL: 2 pass 2 (+++): 0 found - 2 modified | TOTAL: 2 pass 1 (+++): 2 found - 2 modified | TOTAL: 4 pass 2 (+++): 0 found - 2 modified | TOTAL: 4 pass 1 (+++): 0 found - 0 modified | TOTAL: 4 Iteration Number : 2 pass 1 (++): 5 found - 5 modified | TOTAL: 5 pass 2 (++): 0 found - 5 modified | TOTAL: 5 pass 1 (+-): 5 found - 5 modified | TOTAL: 10 pass 2 (+-): 0 found - 5 modified | TOTAL: 10 pass 1 (--): 6 found - 6 modified | TOTAL: 16 pass 2 (--): 0 found - 6 modified | TOTAL: 16 pass 1 (-+): 2 found - 2 modified | TOTAL: 18 pass 2 (-+): 0 found - 2 modified | TOTAL: 18 Iteration Number : 3 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 1 found - 1 modified | TOTAL: 1 pass 2 (yz+): 0 found - 1 modified | TOTAL: 1 pass 1 (yz-): 2 found - 2 modified | TOTAL: 3 pass 2 (yz-): 0 found - 2 modified | TOTAL: 3 pass 1 (xz+): 1 found - 1 modified | TOTAL: 4 pass 2 (xz+): 0 found - 1 modified | TOTAL: 4 pass 1 (xz-): 0 found - 0 modified | TOTAL: 4 Iteration Number : 3 pass 1 (+++): 2 found - 2 modified | TOTAL: 2 pass 2 (+++): 0 found - 2 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 Iteration Number : 3 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 1 found - 1 modified | TOTAL: 1 pass 2 (+-): 0 found - 1 modified | TOTAL: 1 pass 1 (--): 2 found - 2 modified | TOTAL: 3 pass 2 (--): 0 found - 2 modified | TOTAL: 3 pass 1 (-+): 0 found - 0 modified | TOTAL: 3 Iteration Number : 4 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 2 found - 2 modified | TOTAL: 2 pass 2 (yz+): 0 found - 2 modified | TOTAL: 2 pass 1 (yz-): 0 found - 0 modified | TOTAL: 2 pass 1 (xz+): 1 found - 1 modified | TOTAL: 3 pass 2 (xz+): 0 found - 1 modified | TOTAL: 3 pass 1 (xz-): 0 found - 0 modified | TOTAL: 3 Iteration Number : 4 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 1 found - 1 modified | TOTAL: 1 pass 2 (+-): 0 found - 1 modified | TOTAL: 1 pass 1 (--): 0 found - 0 modified | TOTAL: 1 pass 1 (-+): 0 found - 0 modified | TOTAL: 1 Iteration Number : 5 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 5 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 5 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 831 (out of 560568: 0.148242) binarizing input wm segmentation... Ambiguous edge configurations... mri_pretess done #-------------------------------------------- #@# Fill Thu Dec 10 23:12:46 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri mri_fill -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.auto_noCCseg.mgz wm.mgz filled.mgz logging cutting plane coordinates to ../scripts/ponscc.cut.log... INFO: Using transforms/talairach.lta and its offset for Talairach volume ... using segmentation aseg.auto_noCCseg.mgz... reading input volume...done. searching for cutting planes...voxel to talairach voxel transform 1.062 -0.055 -0.031 2.299; 0.061 1.026 0.310 -60.856; 0.017 -0.319 1.044 32.803; 0.000 0.000 0.000 1.000; voxel to talairach voxel transform 1.062 -0.055 -0.031 2.299; 0.061 1.026 0.310 -60.856; 0.017 -0.319 1.044 32.803; 0.000 0.000 0.000 1.000; reading segmented volume aseg.auto_noCCseg.mgz... Looking for area (min, max) = (350, 1400) area[0] = 1393 (min = 350, max = 1400), aspect = 0.50 (min = 0.10, max = 0.75) no need to search using seed (124, 114, 88), TAL = (4.0, -40.0, 14.0) talairach voxel to voxel transform 0.938 0.054 0.012 0.727; -0.047 0.889 -0.266 62.943; -0.030 0.271 0.877 -12.202; 0.000 0.000 0.000 1.000; segmentation indicates cc at (124, 114, 88) --> (4.0, -40.0, 14.0) done. writing output to filled.mgz... filling took 0.5 minutes talairach cc position changed to (4.00, -40.00, 14.00) Erasing brainstem...done. seed_search_size = 9, min_neighbors = 5 search rh wm seed point around talairach space:(22.00, -40.00, 14.00) SRC: (107.31, 135.96, 92.69) search lh wm seed point around talairach space (-14.00, -40.00, 14.00), SRC: (141.08, 134.27, 91.62) compute mri_fill using aseg Erasing Brain Stem and Cerebellum ... Define left and right masks using aseg: Building Voronoi diagram ... Using the Voronoi diagram to separate WM into two hemispheres ... Find the largest connected component for each hemisphere ... #-------------------------------------------- #@# Tessellate lh Thu Dec 10 23:13:17 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mri_pretess ../mri/filled.mgz 255 ../mri/norm.mgz ../mri/filled-pretess255.mgz Iteration Number : 1 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 1 found - 1 modified | TOTAL: 1 pass 2 (yz+): 0 found - 1 modified | TOTAL: 1 pass 1 (yz-): 9 found - 9 modified | TOTAL: 10 pass 2 (yz-): 0 found - 9 modified | TOTAL: 10 pass 1 (xz+): 1 found - 1 modified | TOTAL: 11 pass 2 (xz+): 0 found - 1 modified | TOTAL: 11 pass 1 (xz-): 0 found - 0 modified | TOTAL: 11 Iteration Number : 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 1 pass 1 (++): 1 found - 1 modified | TOTAL: 1 pass 2 (++): 0 found - 1 modified | TOTAL: 1 pass 1 (+-): 0 found - 0 modified | TOTAL: 1 pass 1 (--): 1 found - 1 modified | TOTAL: 2 pass 2 (--): 0 found - 1 modified | TOTAL: 2 pass 1 (-+): 0 found - 0 modified | TOTAL: 2 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 13 (out of 274693: 0.004733) Ambiguous edge configurations... mri_pretess done mri_tessellate ../mri/filled-pretess255.mgz 255 ../surf/lh.orig.nofix $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ slice 40: 249 vertices, 300 faces slice 50: 5461 vertices, 5718 faces slice 60: 15530 vertices, 15933 faces slice 70: 27835 vertices, 28270 faces slice 80: 39199 vertices, 39539 faces slice 90: 50221 vertices, 50638 faces slice 100: 61500 vertices, 61927 faces slice 110: 72581 vertices, 72987 faces slice 120: 83614 vertices, 84069 faces slice 130: 94425 vertices, 94869 faces slice 140: 104674 vertices, 105111 faces slice 150: 113661 vertices, 114058 faces slice 160: 120908 vertices, 121299 faces slice 170: 127464 vertices, 127779 faces slice 180: 132475 vertices, 132751 faces slice 190: 134702 vertices, 134830 faces slice 200: 134702 vertices, 134830 faces slice 210: 134702 vertices, 134830 faces slice 220: 134702 vertices, 134830 faces slice 230: 134702 vertices, 134830 faces slice 240: 134702 vertices, 134830 faces slice 250: 134702 vertices, 134830 faces using the conformed surface RAS to save vertex points... writing ../surf/lh.orig.nofix using vox2ras matrix: -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; rm -f ../mri/filled-pretess255.mgz mris_extract_main_component ../surf/lh.orig.nofix ../surf/lh.orig.nofix counting number of connected components... 134702 voxel in cpt #1: X=-128 [v=134702,e=404490,f=269660] located at (-24.011240, -21.923883, 2.173910) For the whole surface: X=-128 [v=134702,e=404490,f=269660] One single component has been found nothing to do done #-------------------------------------------- #@# Smooth1 lh Thu Dec 10 23:13:21 UTC 2015 mris_smooth -nw -seed 1234 ../surf/lh.orig.nofix ../surf/lh.smoothwm.nofix /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts setting seed for random number generator to 1234 smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation1 lh Thu Dec 10 23:13:24 UTC 2015 mris_inflate -no-save-sulc ../surf/lh.smoothwm.nofix ../surf/lh.inflated.nofix /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts avg radius = 46.5 mm, total surface area = 69521 mm^2 writing inflated surface to ../surf/lh.inflated.nofix inflation took 0.3 minutes Not saving sulc step 000: RMS=0.110 (target=0.015) step 005: RMS=0.084 (target=0.015) step 010: RMS=0.067 (target=0.015) step 015: RMS=0.059 (target=0.015) step 020: RMS=0.054 (target=0.015) step 025: RMS=0.051 (target=0.015) step 030: RMS=0.048 (target=0.015) step 035: RMS=0.045 (target=0.015) step 040: RMS=0.045 (target=0.015) step 045: RMS=0.044 (target=0.015) step 050: RMS=0.043 (target=0.015) step 055: RMS=0.043 (target=0.015) step 060: RMS=0.042 (target=0.015) inflation complete. Not saving sulc #-------------------------------------------- #@# QSphere lh Thu Dec 10 23:13:44 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mris_sphere -q -seed 1234 ../surf/lh.inflated.nofix ../surf/lh.qsphere.nofix doing quick spherical unfolding. setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... vertex spacing 1.00 +- 0.59 (0.00-->7.84) (max @ vno 91073 --> 91084) face area 0.03 +- 0.04 (-0.17-->0.92) scaling brain by 0.346... inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=174.816, avgs=0 005/300: dt: 0.9000, rms radial error=174.556, avgs=0 010/300: dt: 0.9000, rms radial error=173.998, avgs=0 015/300: dt: 0.9000, rms radial error=173.264, avgs=0 020/300: dt: 0.9000, rms radial error=172.428, avgs=0 025/300: dt: 0.9000, rms radial error=171.534, avgs=0 030/300: dt: 0.9000, rms radial error=170.609, avgs=0 035/300: dt: 0.9000, rms radial error=169.671, avgs=0 040/300: dt: 0.9000, rms radial error=168.733, avgs=0 045/300: dt: 0.9000, rms radial error=167.792, avgs=0 050/300: dt: 0.9000, rms radial error=166.853, avgs=0 055/300: dt: 0.9000, rms radial error=165.918, avgs=0 060/300: dt: 0.9000, rms radial error=164.990, avgs=0 065/300: dt: 0.9000, rms radial error=164.066, avgs=0 070/300: dt: 0.9000, rms radial error=163.148, avgs=0 075/300: dt: 0.9000, rms radial error=162.235, avgs=0 080/300: dt: 0.9000, rms radial error=161.327, avgs=0 085/300: dt: 0.9000, rms radial error=160.424, avgs=0 090/300: dt: 0.9000, rms radial error=159.525, avgs=0 095/300: dt: 0.9000, rms radial error=158.631, avgs=0 100/300: dt: 0.9000, rms radial error=157.742, avgs=0 105/300: dt: 0.9000, rms radial error=156.857, avgs=0 110/300: dt: 0.9000, rms radial error=155.977, avgs=0 115/300: dt: 0.9000, rms radial error=155.101, avgs=0 120/300: dt: 0.9000, rms radial error=154.230, avgs=0 125/300: dt: 0.9000, rms radial error=153.364, avgs=0 130/300: dt: 0.9000, rms radial error=152.503, avgs=0 135/300: dt: 0.9000, rms radial error=151.646, avgs=0 140/300: dt: 0.9000, rms radial error=150.795, avgs=0 145/300: dt: 0.9000, rms radial error=149.948, avgs=0 150/300: dt: 0.9000, rms radial error=149.105, avgs=0 155/300: dt: 0.9000, rms radial error=148.268, avgs=0 160/300: dt: 0.9000, rms radial error=147.434, avgs=0 165/300: dt: 0.9000, rms radial error=146.605, avgs=0 170/300: dt: 0.9000, rms radial error=145.781, avgs=0 175/300: dt: 0.9000, rms radial error=144.962, avgs=0 180/300: dt: 0.9000, rms radial error=144.146, avgs=0 185/300: dt: 0.9000, rms radial error=143.336, avgs=0 190/300: dt: 0.9000, rms radial error=142.530, avgs=0 195/300: dt: 0.9000, rms radial error=141.728, avgs=0 200/300: dt: 0.9000, rms radial error=140.930, avgs=0 205/300: dt: 0.9000, rms radial error=140.137, avgs=0 210/300: dt: 0.9000, rms radial error=139.348, avgs=0 215/300: dt: 0.9000, rms radial error=138.564, avgs=0 220/300: dt: 0.9000, rms radial error=137.784, avgs=0 225/300: dt: 0.9000, rms radial error=137.008, avgs=0 230/300: dt: 0.9000, rms radial error=136.237, avgs=0 235/300: dt: 0.9000, rms radial error=135.469, avgs=0 240/300: dt: 0.9000, rms radial error=134.706, avgs=0 245/300: dt: 0.9000, rms radial error=133.948, avgs=0 250/300: dt: 0.9000, rms radial error=133.193, avgs=0 255/300: dt: 0.9000, rms radial error=132.443, avgs=0 260/300: dt: 0.9000, rms radial error=131.697, avgs=0 265/300: dt: 0.9000, rms radial error=130.955, avgs=0 270/300: dt: 0.9000, rms radial error=130.217, avgs=0 275/300: dt: 0.9000, rms radial error=129.484, avgs=0 280/300: dt: 0.9000, rms radial error=128.754, avgs=0 285/300: dt: 0.9000, rms radial error=128.028, avgs=0 290/300: dt: 0.9000, rms radial error=127.307, avgs=0 295/300: dt: 0.9000, rms radial error=126.589, avgs=0 300/300: dt: 0.9000, rms radial error=125.876, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 15290.28 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00008 epoch 2 (K=40.0), pass 1, starting sse = 2459.67 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00020 epoch 3 (K=160.0), pass 1, starting sse = 246.47 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.02/10 = 0.00169 epoch 4 (K=640.0), pass 1, starting sse = 24.04 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.05/11 = 0.00489 final writing spherical brain to ../surf/lh.qsphere.nofix spherical transformation took 0.04 hours distance error %100000.00 #-------------------------------------------- #@# Fix Topology lh Thu Dec 10 23:16:22 UTC 2015 cp ../surf/lh.orig.nofix ../surf/lh.orig cp ../surf/lh.inflated.nofix ../surf/lh.inflated /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mris_fix_topology -mgz -sphere qsphere.nofix -ga -seed 1234 T40_OM_Post lh reading spherical homeomorphism from 'qsphere.nofix' using genetic algorithm with optimized parameters setting seed for random number genererator to 1234 ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ before topology correction, eno=-128 (nv=134702, nf=269660, ne=404490, g=65) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 8 iterations marking ambiguous vertices... 10351 ambiguous faces found in tessellation segmenting defects... 69 defects found, arbitrating ambiguous regions... analyzing neighboring defects... -merging segment 33 into 27 -merging segment 42 into 35 -merging segment 51 into 46 -merging segment 56 into 57 -merging segment 58 into 57 64 defects to be corrected 0 vertices coincident reading input surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Computing Initial Surface Statistics -face loglikelihood: -8.7890 (-4.3945) -vertex loglikelihood: -6.0045 (-3.0023) -normal dot loglikelihood: -3.6382 (-3.6382) -quad curv loglikelihood: -6.2705 (-3.1353) Total Loglikelihood : -24.7023 CORRECTING DEFECT 0 (vertices=107, convex hull=154) After retessellation of defect 0, euler #=-61 (128479,383171,254631) : difference with theory (-61) = 0 CORRECTING DEFECT 1 (vertices=127, convex hull=173) After retessellation of defect 1, euler #=-60 (128552,383472,254860) : difference with theory (-60) = 0 CORRECTING DEFECT 2 (vertices=45, convex hull=87) After retessellation of defect 2, euler #=-59 (128566,383554,254929) : difference with theory (-59) = 0 CORRECTING DEFECT 3 (vertices=53, convex hull=78) After retessellation of defect 3, euler #=-58 (128591,383662,255013) : difference with theory (-58) = 0 CORRECTING DEFECT 4 (vertices=22, convex hull=21) After retessellation of defect 4, euler #=-57 (128591,383669,255021) : difference with theory (-57) = 0 CORRECTING DEFECT 5 (vertices=43, convex hull=98) After retessellation of defect 5, euler #=-56 (128616,383784,255112) : difference with theory (-56) = 0 CORRECTING DEFECT 6 (vertices=26, convex hull=69) After retessellation of defect 6, euler #=-55 (128631,383857,255171) : difference with theory (-55) = 0 CORRECTING DEFECT 7 (vertices=66, convex hull=78) After retessellation of defect 7, euler #=-54 (128659,383977,255264) : difference with theory (-54) = 0 CORRECTING DEFECT 8 (vertices=71, convex hull=79) After retessellation of defect 8, euler #=-53 (128708,384155,255394) : difference with theory (-53) = 0 CORRECTING DEFECT 9 (vertices=26, convex hull=56) After retessellation of defect 9, euler #=-52 (128721,384215,255442) : difference with theory (-52) = 0 CORRECTING DEFECT 10 (vertices=150, convex hull=186) After retessellation of defect 10, euler #=-51 (128815,384585,255719) : difference with theory (-51) = 0 CORRECTING DEFECT 11 (vertices=33, convex hull=100) After retessellation of defect 11, euler #=-50 (128838,384696,255808) : difference with theory (-50) = 0 CORRECTING DEFECT 12 (vertices=130, convex hull=130) After retessellation of defect 12, euler #=-49 (128885,384898,255964) : difference with theory (-49) = 0 CORRECTING DEFECT 13 (vertices=34, convex hull=62) After retessellation of defect 13, euler #=-48 (128908,384992,256036) : difference with theory (-48) = 0 CORRECTING DEFECT 14 (vertices=36, convex hull=77) After retessellation of defect 14, euler #=-47 (128918,385052,256087) : difference with theory (-47) = 0 CORRECTING DEFECT 15 (vertices=28, convex hull=34) After retessellation of defect 15, euler #=-46 (128921,385071,256104) : difference with theory (-46) = 0 CORRECTING DEFECT 16 (vertices=23, convex hull=64) Warning - incorrect dp selected!!!!(-69.287562 >= -69.287566 ) After retessellation of defect 16, euler #=-45 (128930,385123,256148) : difference with theory (-45) = 0 CORRECTING DEFECT 17 (vertices=22, convex hull=20) After retessellation of defect 17, euler #=-44 (128934,385140,256162) : difference with theory (-44) = 0 CORRECTING DEFECT 18 (vertices=31, convex hull=56) After retessellation of defect 18, euler #=-43 (128950,385211,256218) : difference with theory (-43) = 0 CORRECTING DEFECT 19 (vertices=76, convex hull=47) After retessellation of defect 19, euler #=-42 (128959,385253,256252) : difference with theory (-42) = 0 CORRECTING DEFECT 20 (vertices=57, convex hull=62) After retessellation of defect 20, euler #=-41 (128973,385324,256310) : difference with theory (-41) = 0 CORRECTING DEFECT 21 (vertices=16, convex hull=45) After retessellation of defect 21, euler #=-40 (128981,385363,256342) : difference with theory (-40) = 0 CORRECTING DEFECT 22 (vertices=25, convex hull=47) After retessellation of defect 22, euler #=-39 (128993,385415,256383) : difference with theory (-39) = 0 CORRECTING DEFECT 23 (vertices=28, convex hull=69) After retessellation of defect 23, euler #=-38 (129004,385474,256432) : difference with theory (-38) = 0 CORRECTING DEFECT 24 (vertices=39, convex hull=45) After retessellation of defect 24, euler #=-37 (129011,385508,256460) : difference with theory (-37) = 0 CORRECTING DEFECT 25 (vertices=44, convex hull=81) After retessellation of defect 25, euler #=-36 (129027,385590,256527) : difference with theory (-36) = 0 CORRECTING DEFECT 26 (vertices=158, convex hull=107) After retessellation of defect 26, euler #=-35 (129077,385788,256676) : difference with theory (-35) = 0 CORRECTING DEFECT 27 (vertices=127, convex hull=157) After retessellation of defect 27, euler #=-33 (129107,385968,256828) : difference with theory (-34) = -1 CORRECTING DEFECT 28 (vertices=9, convex hull=25) Warning - incorrect dp selected!!!!(-72.279723 >= -72.279724 ) After retessellation of defect 28, euler #=-32 (129109,385982,256841) : difference with theory (-33) = -1 CORRECTING DEFECT 29 (vertices=33, convex hull=45) After retessellation of defect 29, euler #=-31 (129121,386035,256883) : difference with theory (-32) = -1 CORRECTING DEFECT 30 (vertices=56, convex hull=56) After retessellation of defect 30, euler #=-30 (129130,386086,256926) : difference with theory (-31) = -1 CORRECTING DEFECT 31 (vertices=261, convex hull=169) After retessellation of defect 31, euler #=-29 (129187,386338,257122) : difference with theory (-30) = -1 CORRECTING DEFECT 32 (vertices=19, convex hull=63) After retessellation of defect 32, euler #=-28 (129196,386388,257164) : difference with theory (-29) = -1 CORRECTING DEFECT 33 (vertices=35, convex hull=44) After retessellation of defect 33, euler #=-27 (129206,386434,257201) : difference with theory (-28) = -1 CORRECTING DEFECT 34 (vertices=2232, convex hull=788) After retessellation of defect 34, euler #=-29 (129781,388611,258801) : difference with theory (-27) = 2 CORRECTING DEFECT 35 (vertices=26, convex hull=59) After retessellation of defect 35, euler #=-28 (129796,388678,258854) : difference with theory (-26) = 2 CORRECTING DEFECT 36 (vertices=87, convex hull=49) After retessellation of defect 36, euler #=-27 (129805,388728,258896) : difference with theory (-25) = 2 CORRECTING DEFECT 37 (vertices=45, convex hull=30) After retessellation of defect 37, euler #=-26 (129809,388749,258914) : difference with theory (-24) = 2 CORRECTING DEFECT 38 (vertices=6, convex hull=15) After retessellation of defect 38, euler #=-25 (129809,388754,258920) : difference with theory (-23) = 2 CORRECTING DEFECT 39 (vertices=93, convex hull=96) After retessellation of defect 39, euler #=-24 (129870,388978,259084) : difference with theory (-22) = 2 CORRECTING DEFECT 40 (vertices=171, convex hull=58) After retessellation of defect 40, euler #=-23 (129880,389029,259126) : difference with theory (-21) = 2 CORRECTING DEFECT 41 (vertices=127, convex hull=65) After retessellation of defect 41, euler #=-22 (129888,389080,259170) : difference with theory (-20) = 2 CORRECTING DEFECT 42 (vertices=375, convex hull=138) After retessellation of defect 42, euler #=-21 (129961,389369,259387) : difference with theory (-19) = 2 CORRECTING DEFECT 43 (vertices=120, convex hull=90) After retessellation of defect 43, euler #=-20 (130000,389532,259512) : difference with theory (-18) = 2 CORRECTING DEFECT 44 (vertices=15, convex hull=42) After retessellation of defect 44, euler #=-18 (130002,389551,259531) : difference with theory (-17) = 1 CORRECTING DEFECT 45 (vertices=19, convex hull=28) After retessellation of defect 45, euler #=-17 (130006,389569,259546) : difference with theory (-16) = 1 CORRECTING DEFECT 46 (vertices=29, convex hull=58) After retessellation of defect 46, euler #=-16 (130024,389644,259604) : difference with theory (-15) = 1 CORRECTING DEFECT 47 (vertices=23, convex hull=30) After retessellation of defect 47, euler #=-15 (130027,389663,259621) : difference with theory (-14) = 1 CORRECTING DEFECT 48 (vertices=27, convex hull=36) After retessellation of defect 48, euler #=-14 (130033,389695,259648) : difference with theory (-13) = 1 CORRECTING DEFECT 49 (vertices=30, convex hull=35) After retessellation of defect 49, euler #=-13 (130042,389733,259678) : difference with theory (-12) = 1 CORRECTING DEFECT 50 (vertices=7, convex hull=19) After retessellation of defect 50, euler #=-12 (130043,389743,259688) : difference with theory (-11) = 1 CORRECTING DEFECT 51 (vertices=8, convex hull=21) After retessellation of defect 51, euler #=-11 (130045,389757,259701) : difference with theory (-10) = 1 CORRECTING DEFECT 52 (vertices=44, convex hull=95) After retessellation of defect 52, euler #=-10 (130067,389863,259786) : difference with theory (-9) = 1 CORRECTING DEFECT 53 (vertices=265, convex hull=297) After retessellation of defect 53, euler #=-8 (130190,390399,260201) : difference with theory (-8) = 0 CORRECTING DEFECT 54 (vertices=93, convex hull=105) After retessellation of defect 54, euler #=-7 (130212,390509,260290) : difference with theory (-7) = 0 CORRECTING DEFECT 55 (vertices=62, convex hull=62) After retessellation of defect 55, euler #=-6 (130241,390625,260378) : difference with theory (-6) = 0 CORRECTING DEFECT 56 (vertices=27, convex hull=33) After retessellation of defect 56, euler #=-5 (130244,390649,260400) : difference with theory (-5) = 0 CORRECTING DEFECT 57 (vertices=19, convex hull=19) After retessellation of defect 57, euler #=-4 (130247,390663,260412) : difference with theory (-4) = 0 CORRECTING DEFECT 58 (vertices=19, convex hull=22) After retessellation of defect 58, euler #=-3 (130250,390678,260425) : difference with theory (-3) = 0 CORRECTING DEFECT 59 (vertices=96, convex hull=25) After retessellation of defect 59, euler #=-2 (130254,390697,260441) : difference with theory (-2) = 0 CORRECTING DEFECT 60 (vertices=44, convex hull=30) After retessellation of defect 60, euler #=-1 (130259,390723,260463) : difference with theory (-1) = 0 CORRECTING DEFECT 61 (vertices=29, convex hull=61) After retessellation of defect 61, euler #=0 (130272,390783,260511) : difference with theory (0) = 0 CORRECTING DEFECT 62 (vertices=22, convex hull=55) After retessellation of defect 62, euler #=1 (130278,390818,260541) : difference with theory (1) = 0 CORRECTING DEFECT 63 (vertices=16, convex hull=29) After retessellation of defect 63, euler #=2 (130281,390837,260558) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.88 +- 0.25 (0.03-->17.15) (max @ vno 107932 --> 132024) face area 0.00 +- 0.00 (0.00-->0.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.88 +- 0.25 (0.03-->17.15) (max @ vno 107932 --> 132024) face area 0.00 +- 0.00 (0.00-->0.00) tessellation finished, orienting corrected surface... 223 mutations (33.5%), 442 crossovers (66.5%), 244 vertices were eliminated building final representation... 4421 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=130281, nf=260558, ne=390837, g=0) writing corrected surface to /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.orig... 0.000 % of the vertices (0 vertices) exhibit an orientation change topology fixing took 30.4 minutes 0 defective edges removing intersecting faces 000: 680 intersecting 001: 37 intersecting 002: 17 intersecting mris_euler_number ../surf/lh.orig euler # = v-e+f = 2g-2: 130281 - 390837 + 260558 = 2 --> 0 holes F =2V-4: 260558 = 260562-4 (0) 2E=3F: 781674 = 781674 (0) total defect index = 0 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mris_remove_intersection ../surf/lh.orig ../surf/lh.orig intersection removal took 0.00 hours removing intersecting faces 000: 209 intersecting 001: 20 intersecting 002: 17 intersecting writing corrected surface to ../surf/lh.orig rm ../surf/lh.inflated #-------------------------------------------- #@# Make White Surf lh Thu Dec 10 23:46:50 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mris_make_surfaces -noaparc -whiteonly -mgz -T1 brain.finalsurfs T40_OM_Post lh only generating white matter surface not using aparc to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/filled.mgz... reading volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/brain.finalsurfs.mgz... reading volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... 13615 bright wm thresholded. 2587 bright non-wm voxels segmented. reading original surface position from /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.orig... computing class statistics... border white: 274904 voxels (1.64%) border gray 286178 voxels (1.71%) WM (98.0): 98.5 +- 6.4 [70.0 --> 110.0] GM (89.0) : 86.3 +- 11.8 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 71.2 (was 70) setting MAX_BORDER_WHITE to 109.4 (was 105) setting MIN_BORDER_WHITE to 83.0 (was 85) setting MAX_CSF to 59.4 (was 40) setting MAX_GRAY to 96.6 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 77.1 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 47.6 (was 40) repositioning cortical surface to gray/white boundary reading volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/aseg.mgz... smoothing T1 volume with sigma = 2.000 vertex spacing 0.81 +- 0.23 (0.02-->3.92) (max @ vno 93140 --> 129161) face area 0.28 +- 0.13 (0.00-->3.99) mean absolute distance = 0.92 +- 1.23 4923 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... smoothing contralateral hemisphere... using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=103, GM=83 mean inside = 97.3, mean outside = 84.5 smoothing surface for 5 iterations... inhibiting deformation at non-cortical midline structures... mean border=90.4, 178 (178) missing vertices, mean dist 0.1 [1.1 (%38.1)->0.8 (%61.9))] %31 local maxima, %64 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=ubunt, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.88 +- 0.27 (0.09-->4.51) (max @ vno 93140 --> 129161) face area 0.28 +- 0.14 (0.00-->3.46) mean absolute distance = 0.56 +- 0.93 5281 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3787369.0, rms=7.52 001: dt: 0.5000, sse=4736120.5, rms=5.227 (0.000%) 002: dt: 0.5000, sse=4818738.0, rms=3.788 (0.000%) 003: dt: 0.5000, sse=4991161.0, rms=2.962 (0.000%) 004: dt: 0.5000, sse=5067406.0, rms=2.551 (0.000%) 005: dt: 0.5000, sse=5126116.5, rms=2.330 (0.000%) 006: dt: 0.5000, sse=5145482.0, rms=2.233 (0.000%) 007: dt: 0.5000, sse=5191007.0, rms=2.169 (0.000%) rms = 2.13, time step reduction 1 of 3 to 0.250... 008: dt: 0.5000, sse=5188147.5, rms=2.130 (0.000%) 009: dt: 0.2500, sse=3790204.5, rms=1.746 (0.000%) 010: dt: 0.2500, sse=3637026.2, rms=1.683 (0.000%) rms = 1.67, time step reduction 2 of 3 to 0.125... 011: dt: 0.2500, sse=3584870.0, rms=1.673 (0.000%) rms = 1.65, time step reduction 3 of 3 to 0.062... 012: dt: 0.1250, sse=3549914.2, rms=1.654 (0.000%) positioning took 1.0 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group mean border=92.2, 188 (85) missing vertices, mean dist -0.3 [0.7 (%59.6)->0.3 (%40.4))] %48 local maxima, %47 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=ubunt, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.87 +- 0.26 (0.07-->4.55) (max @ vno 93140 --> 129161) face area 0.33 +- 0.17 (0.00-->4.09) mean absolute distance = 0.45 +- 0.58 4579 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3821451.0, rms=3.20 013: dt: 0.5000, sse=4133352.8, rms=2.116 (0.000%) 014: dt: 0.5000, sse=4542268.0, rms=1.804 (0.000%) 015: dt: 0.5000, sse=4539376.0, rms=1.733 (0.000%) rms = 1.73, time step reduction 1 of 3 to 0.250... 016: dt: 0.5000, sse=4830462.0, rms=1.725 (0.000%) 017: dt: 0.2500, sse=3927591.8, rms=1.427 (0.000%) rms = 1.39, time step reduction 2 of 3 to 0.125... 018: dt: 0.2500, sse=3799259.2, rms=1.393 (0.000%) rms = 1.38, time step reduction 3 of 3 to 0.062... 019: dt: 0.1250, sse=3765394.5, rms=1.382 (0.000%) positioning took 0.6 minutes inhibiting deformation at non-cortical midline structures... mean border=94.3, 162 (69) missing vertices, mean dist -0.3 [0.5 (%68.4)->0.3 (%31.6))] %70 local maxima, %25 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=ubunt, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.86 +- 0.26 (0.04-->4.62) (max @ vno 93140 --> 129161) face area 0.32 +- 0.17 (0.00-->3.94) mean absolute distance = 0.34 +- 0.44 4087 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3942084.8, rms=3.14 020: dt: 0.5000, sse=4091150.5, rms=1.830 (0.000%) 021: dt: 0.5000, sse=4549028.0, rms=1.580 (0.000%) rms = 1.58, time step reduction 1 of 3 to 0.250... 022: dt: 0.2500, sse=4131708.2, rms=1.385 (0.000%) 023: dt: 0.2500, sse=3930179.0, rms=1.291 (0.000%) rms = 1.28, time step reduction 2 of 3 to 0.125... 024: dt: 0.2500, sse=3896795.8, rms=1.280 (0.000%) rms = 1.27, time step reduction 3 of 3 to 0.062... 025: dt: 0.1250, sse=3863182.0, rms=1.267 (0.000%) positioning took 0.5 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group mean border=95.2, 182 (59) missing vertices, mean dist -0.1 [0.4 (%59.4)->0.3 (%40.6))] %79 local maxima, %15 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=ubunt, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing white matter surface to /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white... writing smoothed curvature to lh.curv 000: dt: 0.0000, sse=3887852.5, rms=1.77 026: dt: 0.5000, sse=4713456.5, rms=1.145 (0.000%) rms = 1.38, time step reduction 1 of 3 to 0.250... 027: dt: 0.2500, sse=4380901.5, rms=1.037 (0.000%) rms = 1.05, time step reduction 2 of 3 to 0.125... rms = 1.03, time step reduction 3 of 3 to 0.062... 028: dt: 0.1250, sse=4345406.0, rms=1.026 (0.000%) positioning took 0.3 minutes inhibiting deformation at non-cortical midline structures... generating cortex label... 8 non-cortical segments detected only using segment with 2009 vertices erasing segment 1 (vno[0] = 82818) erasing segment 2 (vno[0] = 94878) erasing segment 3 (vno[0] = 94889) erasing segment 4 (vno[0] = 98719) erasing segment 5 (vno[0] = 100234) erasing segment 6 (vno[0] = 104813) erasing segment 7 (vno[0] = 106267) writing cortex label to /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/label/lh.cortex.label... writing curvature file /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.curv writing smoothed area to lh.area writing curvature file /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.area vertex spacing 0.86 +- 0.27 (0.06-->4.59) (max @ vno 93140 --> 129161) face area 0.31 +- 0.16 (0.00-->3.91) refinement took 3.8 minutes #-------------------------------------------- #@# Smooth2 lh Thu Dec 10 23:50:39 UTC 2015 mris_smooth -n 3 -nw -seed 1234 ../surf/lh.white ../surf/lh.smoothwm /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts smoothing for 3 iterations setting seed for random number generator to 1234 smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation2 lh Thu Dec 10 23:50:42 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mris_inflate ../surf/lh.smoothwm ../surf/lh.inflated avg radius = 46.6 mm, total surface area = 73795 mm^2 writing inflated surface to ../surf/lh.inflated writing sulcal depths to ../surf/lh.sulc step 000: RMS=0.115 (target=0.015) step 005: RMS=0.082 (target=0.015) step 010: RMS=0.061 (target=0.015) step 015: RMS=0.050 (target=0.015) step 020: RMS=0.041 (target=0.015) step 025: RMS=0.035 (target=0.015) step 030: RMS=0.030 (target=0.015) step 035: RMS=0.026 (target=0.015) step 040: RMS=0.023 (target=0.015) step 045: RMS=0.021 (target=0.015) step 050: RMS=0.019 (target=0.015) step 055: RMS=0.018 (target=0.015) step 060: RMS=0.017 (target=0.015) inflation complete. inflation took 0.5 minutes mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 ../surf/lh.inflated normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 155 vertices thresholded to be in k1 ~ [-0.31 0.62], k2 ~ [-0.21 0.11] total integrated curvature = 0.523*4pi (6.578) --> 0 handles ICI = 1.4, FI = 8.7, variation=149.882 131 vertices thresholded to be in [-0.06 0.02] writing Gaussian curvature to ../surf/lh.inflated.K...thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.002 106 vertices thresholded to be in [-0.14 0.23] done. writing mean curvature to ../surf/lh.inflated.H...curvature mean = -0.017, std = 0.023 done. #----------------------------------------- #@# Curvature Stats lh Thu Dec 10 23:52:20 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/lh.curv.stats -F smoothwm T40_OM_Post lh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/lh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ T40_OM_Post/lh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vertex faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 237 ] Gb_filter = 0 WARN: S lookup min: -0.387176 WARN: S explicit min: 0.000000 vertex = 218 #-------------------------------------------- #@# Sphere lh Thu Dec 10 23:52:24 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mris_sphere -seed 1234 ../surf/lh.inflated ../surf/lh.sphere setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... scaling brain by 0.330... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=ubunt, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 1234 -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %19.59 pass 1: epoch 2 of 3 starting distance error %19.58 unfolding complete - removing small folds... starting distance error %19.40 removing remaining folds... final distance error %19.42 MRISunfold() return, current seed 1234 writing spherical brain to ../surf/lh.sphere spherical transformation took 0.81 hours #-------------------------------------------- #@# Surf Reg lh Fri Dec 11 00:40:54 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mris_register -curv ../surf/lh.sphere /cdrom/Marco/freesurfer/average/lh.average.curvature.filled.buckner40.tif ../surf/lh.sphere.reg using smoothwm curvature for final alignment $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading surface from ../surf/lh.sphere... reading template parameterization from /cdrom/Marco/freesurfer/average/lh.average.curvature.filled.buckner40.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=ubunt, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 0 randomSeed 0 tol=5.0e-01, sigma=0.0, host=ubunt, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading lh.sulc curvature mean = -0.000, std = 0.589 curvature mean = 0.030, std = 0.939 curvature mean = 0.030, std = 0.874 Starting MRISrigidBodyAlignGlobal() d=64.00 min @ (0.00, -16.00, 0.00) sse = 310532.3, tmin=0.8718 d=32.00 min @ (8.00, 8.00, -8.00) sse = 200016.1, tmin=1.7425 d=16.00 min @ (-4.00, 0.00, 4.00) sse = 197590.4, tmin=2.6126 d=8.00 min @ (2.00, 0.00, -2.00) sse = 186335.1, tmin=3.4855 d=2.00 min @ (0.00, 0.50, 0.00) sse = 185800.3, tmin=5.2421 tol=1.0e+00, sigma=0.5, host=ubunt, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization MRISrigidBodyAlignGlobal() done 7.00 min curvature mean = -0.008, std = 0.962 curvature mean = 0.011, std = 0.948 curvature mean = -0.014, std = 0.973 curvature mean = 0.004, std = 0.977 curvature mean = -0.015, std = 0.976 curvature mean = 0.001, std = 0.990 2 Reading smoothwm curvature mean = -0.039, std = 0.318 curvature mean = 0.002, std = 0.067 curvature mean = 0.079, std = 0.317 curvature mean = 0.002, std = 0.079 curvature mean = 0.041, std = 0.498 curvature mean = 0.002, std = 0.085 curvature mean = 0.024, std = 0.631 curvature mean = 0.001, std = 0.088 curvature mean = 0.010, std = 0.741 MRISregister() return, current seed 0 writing registered surface to ../surf/lh.sphere.reg... expanding nbhd size to 1 #-------------------------------------------- #@# Jacobian white lh Fri Dec 11 00:58:20 UTC 2015 mris_jacobian ../surf/lh.white ../surf/lh.sphere.reg ../surf/lh.jacobian_white reading surface from ../surf/lh.white... writing curvature file ../surf/lh.jacobian_white #-------------------------------------------- #@# AvgCurv lh Fri Dec 11 00:58:21 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mrisp_paint -a 5 /cdrom/Marco/freesurfer/average/lh.average.curvature.filled.buckner40.tif#6 ../surf/lh.sphere.reg ../surf/lh.avg_curv averaging curvature patterns 5 times... reading surface from ../surf/lh.sphere.reg... reading template parameterization from /cdrom/Marco/freesurfer/average/lh.average.curvature.filled.buckner40.tif... writing curvature file to ../surf/lh.avg_curv... #----------------------------------------- #@# Cortical Parc lh Fri Dec 11 00:58:22 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 T40_OM_Post lh ../surf/lh.sphere.reg /cdrom/Marco/freesurfer/average/lh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ../label/lh.aparc.annot setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading atlas from /cdrom/Marco/freesurfer/average/lh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs... reading color table from GCSA file.... average std = 1.0 using min determinant for regularization = 0.011 0 singular and 384 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 1232 labels changed using aseg relabeling using gibbs priors... 000: 2854 changed, 130281 examined... 001: 640 changed, 12286 examined... 002: 158 changed, 3581 examined... 003: 43 changed, 953 examined... 004: 14 changed, 254 examined... 005: 5 changed, 86 examined... 006: 5 changed, 33 examined... 007: 7 changed, 27 examined... 008: 4 changed, 30 examined... 009: 3 changed, 25 examined... 010: 1 changed, 19 examined... 011: 1 changed, 7 examined... 012: 2 changed, 7 examined... 013: 0 changed, 12 examined... 220 labels changed using aseg 000: 115 total segments, 65 labels (289 vertices) changed 001: 48 total segments, 7 labels (20 vertices) changed 002: 41 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 42 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1268 vertices marked for relabeling... 1268 labels changed in reclassification. writing output to ../label/lh.aparc.annot... classification took 0 minutes and 26 seconds. #-------------------------------------------- #@# Make Pial Surf lh Fri Dec 11 00:58:48 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mris_make_surfaces -white NOWRITE -mgz -T1 brain.finalsurfs T40_OM_Post lh -white NOWRITE indicates that white, curv, area, and cortex.label files will not be written... INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/filled.mgz... reading volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/brain.finalsurfs.mgz... reading volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... 13615 bright wm thresholded. 2587 bright non-wm voxels segmented. reading original surface position from /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.orig... computing class statistics... border white: 274904 voxels (1.64%) border gray 286178 voxels (1.71%) WM (98.0): 98.5 +- 6.4 [70.0 --> 110.0] GM (89.0) : 86.3 +- 11.8 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 71.2 (was 70) setting MAX_BORDER_WHITE to 109.4 (was 105) setting MIN_BORDER_WHITE to 83.0 (was 85) setting MAX_CSF to 59.4 (was 40) setting MAX_GRAY to 96.6 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 77.1 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 47.6 (was 40) smoothing contralateral hemisphere... using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=103, GM=83 mean inside = 97.3, mean outside = 84.5 smoothing surface for 5 iterations... reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) repositioning cortical surface to gray/white boundary reading volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/aseg.mgz... smoothing T1 volume with sigma = 2.000 vertex spacing 0.81 +- 0.23 (0.02-->3.92) (max @ vno 93140 --> 129161) face area 0.28 +- 0.13 (0.00-->3.99) mean absolute distance = 0.93 +- 1.24 5060 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... deleting segment 1 with 582 points - only 0.00% unknown mean border=90.4, 181 (180) missing vertices, mean dist 0.1 [1.1 (%38.1)->0.8 (%61.9))] %31 local maxima, %64 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=ubunt, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.88 +- 0.27 (0.09-->4.51) (max @ vno 93140 --> 129161) face area 0.28 +- 0.14 (0.00-->3.46) mean absolute distance = 0.56 +- 0.93 5308 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3799345.2, rms=7.52 001: dt: 0.5000, sse=4761864.5, rms=5.232 (0.000%) 002: dt: 0.5000, sse=4846086.0, rms=3.799 (0.000%) 003: dt: 0.5000, sse=5022097.5, rms=2.979 (0.000%) 004: dt: 0.5000, sse=5100483.5, rms=2.575 (0.000%) 005: dt: 0.5000, sse=5163718.5, rms=2.359 (0.000%) 006: dt: 0.5000, sse=5183023.0, rms=2.264 (0.000%) 007: dt: 0.5000, sse=5228564.5, rms=2.198 (0.000%) rms = 2.16, time step reduction 1 of 3 to 0.250... 008: dt: 0.5000, sse=5225603.0, rms=2.157 (0.000%) 009: dt: 0.2500, sse=3821044.2, rms=1.777 (0.000%) 010: dt: 0.2500, sse=3666345.2, rms=1.715 (0.000%) rms = 1.70, time step reduction 2 of 3 to 0.125... 011: dt: 0.2500, sse=3615714.2, rms=1.703 (0.000%) rms = 1.68, time step reduction 3 of 3 to 0.062... 012: dt: 0.1250, sse=3579274.2, rms=1.684 (0.000%) positioning took 0.8 minutes inhibiting deformation at non-cortical midline structures... deleting segment 3 with 465 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 4 with 3 points - only 33.33% unknown deleting segment 8 with 6 points - only 0.00% unknown mean border=92.1, 202 (85) missing vertices, mean dist -0.3 [0.7 (%59.5)->0.3 (%40.5))] %48 local maxima, %47 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=ubunt, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.87 +- 0.26 (0.07-->4.55) (max @ vno 93140 --> 129161) face area 0.33 +- 0.17 (0.00-->4.09) mean absolute distance = 0.45 +- 0.58 4596 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3852154.0, rms=3.20 013: dt: 0.5000, sse=4167539.2, rms=2.133 (0.000%) 014: dt: 0.5000, sse=4582375.0, rms=1.821 (0.000%) 015: dt: 0.5000, sse=4578913.5, rms=1.749 (0.000%) rms = 1.74, time step reduction 1 of 3 to 0.250... 016: dt: 0.5000, sse=4871273.0, rms=1.739 (0.000%) 017: dt: 0.2500, sse=3963407.8, rms=1.444 (0.000%) rms = 1.41, time step reduction 2 of 3 to 0.125... 018: dt: 0.2500, sse=3833148.0, rms=1.409 (0.000%) rms = 1.40, time step reduction 3 of 3 to 0.062... 019: dt: 0.1250, sse=3800211.2, rms=1.398 (0.000%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 323 points - only 0.00% unknown deleting segment 1 with 150 points - only 0.00% unknown deleting segment 2 with 5 points - only 20.00% unknown removing 3 vertex label from ripped group deleting segment 3 with 3 points - only 0.00% unknown mean border=94.3, 201 (69) missing vertices, mean dist -0.3 [0.5 (%68.4)->0.3 (%31.6))] %70 local maxima, %25 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=ubunt, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.86 +- 0.26 (0.04-->4.62) (max @ vno 93140 --> 129161) face area 0.32 +- 0.16 (0.00-->3.94) mean absolute distance = 0.34 +- 0.45 4127 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3978188.8, rms=3.15 020: dt: 0.5000, sse=4123045.5, rms=1.840 (0.000%) 021: dt: 0.5000, sse=4583598.5, rms=1.589 (0.000%) rms = 1.59, time step reduction 1 of 3 to 0.250... 022: dt: 0.2500, sse=4163954.5, rms=1.395 (0.000%) 023: dt: 0.2500, sse=3960791.8, rms=1.300 (0.000%) rms = 1.29, time step reduction 2 of 3 to 0.125... 024: dt: 0.2500, sse=3925777.5, rms=1.288 (0.000%) rms = 1.27, time step reduction 3 of 3 to 0.062... 025: dt: 0.1250, sse=3890295.2, rms=1.275 (0.000%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 346 points - only 0.00% unknown deleting segment 1 with 182 points - only 0.00% unknown mean border=95.2, 229 (59) missing vertices, mean dist -0.1 [0.4 (%59.4)->0.3 (%40.6))] %80 local maxima, %15 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=ubunt, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 repositioning cortical surface to gray/csf boundary. smoothing T1 volume with sigma = 2.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=3915484.0, rms=1.78 026: dt: 0.5000, sse=4750821.5, rms=1.152 (0.000%) rms = 1.38, time step reduction 1 of 3 to 0.250... 027: dt: 0.2500, sse=4416773.0, rms=1.044 (0.000%) rms = 1.05, time step reduction 2 of 3 to 0.125... rms = 1.03, time step reduction 3 of 3 to 0.062... 028: dt: 0.1250, sse=4380966.0, rms=1.034 (0.000%) positioning took 0.3 minutes inhibiting deformation at non-cortical midline structures... deleting segment 1 with 32 points - only 0.00% unknown smoothing surface for 5 iterations... mean border=70.6, 226 (226) missing vertices, mean dist 2.1 [3.1 (%0.0)->2.4 (%100.0))] %42 local maxima, %40 large gradients and %13 min vals, 631 gradients ignored tol=1.0e-04, sigma=2.0, host=ubunt, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 1.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=18285648.0, rms=25.39 001: dt: 0.5000, sse=15386550.0, rms=22.951 (0.000%) 002: dt: 0.5000, sse=12985411.0, rms=20.732 (0.000%) 003: dt: 0.5000, sse=11164668.0, rms=18.780 (0.000%) 004: dt: 0.5000, sse=9941948.0, rms=17.032 (0.000%) 005: dt: 0.5000, sse=9059596.0, rms=15.409 (0.000%) 006: dt: 0.5000, sse=8376264.0, rms=13.857 (0.000%) 007: dt: 0.5000, sse=7758285.5, rms=12.286 (0.000%) 008: dt: 0.5000, sse=7252135.0, rms=10.705 (0.000%) 009: dt: 0.5000, sse=6857527.5, rms=9.164 (0.000%) 010: dt: 0.5000, sse=6661426.0, rms=7.783 (0.000%) 011: dt: 0.5000, sse=6559804.5, rms=6.674 (0.000%) 012: dt: 0.5000, sse=6582680.0, rms=5.936 (0.000%) 013: dt: 0.5000, sse=6643562.5, rms=5.470 (0.000%) 014: dt: 0.5000, sse=6689112.5, rms=5.204 (0.000%) 015: dt: 0.5000, sse=6699008.5, rms=4.980 (0.000%) 016: dt: 0.5000, sse=6736796.5, rms=4.861 (0.000%) 017: dt: 0.5000, sse=6723576.5, rms=4.748 (0.000%) 018: dt: 0.5000, sse=6724970.5, rms=4.692 (0.000%) 019: dt: 0.5000, sse=6711370.5, rms=4.624 (0.000%) rms = 4.60, time step reduction 1 of 3 to 0.250... 020: dt: 0.5000, sse=6740424.0, rms=4.596 (0.000%) 021: dt: 0.2500, sse=4244909.0, rms=3.400 (0.000%) 022: dt: 0.2500, sse=3961183.8, rms=3.047 (0.000%) 023: dt: 0.2500, sse=3783974.0, rms=2.973 (0.000%) rms = 2.93, time step reduction 2 of 3 to 0.125... 024: dt: 0.2500, sse=3740026.8, rms=2.930 (0.000%) 025: dt: 0.1250, sse=3473200.0, rms=2.665 (0.000%) rms = 2.63, time step reduction 3 of 3 to 0.062... 026: dt: 0.1250, sse=3439070.8, rms=2.632 (0.000%) positioning took 1.5 minutes mean border=67.3, 478 (36) missing vertices, mean dist 0.2 [0.2 (%33.9)->0.4 (%66.1))] %65 local maxima, %22 large gradients and % 8 min vals, 264 gradients ignored tol=1.0e-04, sigma=1.0, host=ubunt, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 averaging target values for 5 iterations... 000: dt: 0.0000, sse=4261150.5, rms=5.65 027: dt: 0.5000, sse=4527161.0, rms=4.569 (0.000%) rms = 4.63, time step reduction 1 of 3 to 0.250... 028: dt: 0.2500, sse=4031917.5, rms=3.549 (0.000%) 029: dt: 0.2500, sse=3989286.5, rms=3.146 (0.000%) 030: dt: 0.2500, sse=3966871.2, rms=3.011 (0.000%) 031: dt: 0.2500, sse=3978905.8, rms=2.961 (0.000%) rms = 2.94, time step reduction 2 of 3 to 0.125... 032: dt: 0.2500, sse=3983697.5, rms=2.939 (0.000%) 033: dt: 0.1250, sse=3776051.2, rms=2.663 (0.000%) 034: dt: 0.1250, sse=3742241.0, rms=2.612 (0.000%) rms = 2.60, time step reduction 3 of 3 to 0.062... 035: dt: 0.1250, sse=3730552.0, rms=2.604 (0.000%) positioning took 0.6 minutes mean border=65.5, 707 (24) missing vertices, mean dist 0.1 [0.2 (%36.5)->0.3 (%63.5))] %74 local maxima, %13 large gradients and % 8 min vals, 264 gradients ignored tol=1.0e-04, sigma=0.5, host=ubunt, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 averaging target values for 5 iterations... 000: dt: 0.0000, sse=3881375.2, rms=3.53 rms = 4.33, time step reduction 1 of 3 to 0.250... 036: dt: 0.2500, sse=3736028.8, rms=2.881 (0.000%) 037: dt: 0.2500, sse=3779854.0, rms=2.694 (0.000%) 038: dt: 0.2500, sse=3881585.0, rms=2.640 (0.000%) rms = 2.65, time step reduction 2 of 3 to 0.125... 039: dt: 0.1250, sse=3828188.0, rms=2.569 (0.000%) 040: dt: 0.1250, sse=3775867.2, rms=2.468 (0.000%) rms = 2.45, time step reduction 3 of 3 to 0.062... 041: dt: 0.1250, sse=3756502.8, rms=2.449 (0.000%) positioning took 0.4 minutes mean border=64.9, 1364 (20) missing vertices, mean dist 0.0 [0.2 (%46.0)->0.2 (%54.0))] %76 local maxima, %11 large gradients and % 8 min vals, 242 gradients ignored tol=1.0e-04, sigma=0.2, host=ubunt, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing pial surface to /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.pial... writing smoothed curvature to lh.curv.pial 000: dt: 0.0000, sse=3776617.8, rms=2.63 rms = 3.47, time step reduction 1 of 3 to 0.250... 042: dt: 0.2500, sse=3725570.5, rms=2.417 (0.000%) rms = 2.37, time step reduction 2 of 3 to 0.125... 043: dt: 0.2500, sse=3859498.5, rms=2.371 (0.000%) 044: dt: 0.1250, sse=3788709.5, rms=2.304 (0.000%) rms = 2.27, time step reduction 3 of 3 to 0.062... 045: dt: 0.1250, sse=3797456.5, rms=2.270 (0.000%) positioning took 0.3 minutes writing curvature file /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.curv.pial writing smoothed area to lh.area.pial writing curvature file /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.area.pial vertex spacing 0.96 +- 0.40 (0.09-->6.80) (max @ vno 98839 --> 98857) face area 0.37 +- 0.28 (0.00-->5.89) measuring cortical thickness... writing cortical thickness estimate to 'thickness' file. 0 of 130281 vertices processed 25000 of 130281 vertices processed 50000 of 130281 vertices processed 75000 of 130281 vertices processed 100000 of 130281 vertices processed 125000 of 130281 vertices processed 0 of 130281 vertices processed 25000 of 130281 vertices processed 50000 of 130281 vertices processed 75000 of 130281 vertices processed 100000 of 130281 vertices processed 125000 of 130281 vertices processed thickness calculation complete, 152:567 truncations. 38382 vertices at 0 distance 92900 vertices at 1 distance 72987 vertices at 2 distance 30518 vertices at 3 distance 9950 vertices at 4 distance 2871 vertices at 5 distance 924 vertices at 6 distance 331 vertices at 7 distance 154 vertices at 8 distance 66 vertices at 9 distance 31 vertices at 10 distance 13 vertices at 11 distance 9 vertices at 12 distance 11 vertices at 13 distance 12 vertices at 14 distance 10 vertices at 15 distance 9 vertices at 16 distance 9 vertices at 17 distance 6 vertices at 18 distance 1 vertices at 19 distance 4 vertices at 20 distance writing curvature file /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.thickness positioning took 6.5 minutes #-------------------------------------------- #@# Surf Volume lh Fri Dec 11 01:05:18 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf mris_calc -o lh.area.mid lh.area add lh.area.pial Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o lh.area.mid lh.area.mid div 2 Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o lh.volume lh.area.mid mul lh.thickness Saving result to 'lh.volume' (type = MRI_CURV_FILE) [ ok ] #----------------------------------------- #@# WM/GM Contrast lh Fri Dec 11 01:05:18 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts pctsurfcon --s T40_OM_Post --lh-only Log file is /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts/pctsurfcon.log Fri Dec 11 01:05:18 UTC 2015 setenv SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects cd /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts /cdrom/Marco/freesurfer/bin/pctsurfcon $Id: pctsurfcon,v 1.11.2.1 2011/11/10 20:37:10 nicks Exp $ Linux ubuntu 3.19.0-25-generic #26~14.04.1-Ubuntu SMP Fri Jul 24 21:16:20 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /cdrom/Marco/freesurfer mri_vol2surf --mov /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --projdist -1 --o /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.24084/lh.wm.mgh --regheader T40_OM_Post --cortex srcvol = /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/orig.mgz as target reference. Loading label /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/label/lh.cortex.label Reading surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 81718 Masking with /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/label/lh.cortex.label Writing to /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.24084/lh.wm.mgh Dim: 130281 1 1 mri_vol2surf --mov /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --o /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.24084/lh.gm.mgh --projfrac 0.3 --regheader T40_OM_Post --cortex srcvol = /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/orig.mgz as target reference. Loading label /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/label/lh.cortex.label Reading surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Done reading source surface Reading thickness /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.thickness Done Mapping Source Volume onto Source Subject Surface 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 97093 Masking with /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/label/lh.cortex.label Writing to /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.24084/lh.gm.mgh Dim: 130281 1 1 mri_concat /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.24084/lh.wm.mgh /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.24084/lh.gm.mgh --paired-diff-norm --mul 100 --o /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.w-g.pct.mgh mri_segstats --in /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.w-g.pct.mgh --annot T40_OM_Post lh aparc --sum /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/stats/lh.w-g.pct.stats --snr $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --in /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.w-g.pct.mgh --annot T40_OM_Post lh aparc --sum /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/stats/lh.w-g.pct.stats --snr sysname Linux hostname ubuntu machine x86_64 user marco UseRobust 0 Constructing seg from annotation Reading annotation reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Seg base 1000 Loading /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.w-g.pct.mgh Vertex Area is 0.620344 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation 0 1000 unknown 0 0.000 1 1001 bankssts 1212 853.842 2 1002 caudalanteriorcingulate 1210 768.931 3 1003 caudalmiddlefrontal 3837 2258.765 4 1004 corpuscallosum 0 0.000 5 1005 cuneus 2169 1231.965 6 1006 entorhinal 614 394.644 7 1007 fusiform 4002 2595.427 8 1008 inferiorparietal 5998 3844.958 9 1009 inferiortemporal 4865 3246.995 10 1010 isthmuscingulate 1509 885.972 11 1011 lateraloccipital 7437 4380.189 12 1012 lateralorbitofrontal 3480 2266.488 13 1013 lingual 3724 2325.127 14 1014 medialorbitofrontal 2866 1757.451 15 1015 middletemporal 3912 2560.740 16 1016 parahippocampal 900 594.831 17 1017 paracentral 2338 1351.903 18 1018 parsopercularis 2812 1714.592 19 1019 parsorbitalis 851 531.554 20 1020 parstriangularis 1494 994.000 21 1021 pericalcarine 1823 1177.709 22 1022 postcentral 6446 3768.000 23 1023 posteriorcingulate 1593 1034.476 24 1024 precentral 7437 4412.125 25 1025 precuneus 5626 3654.712 26 1026 rostralanteriorcingulate 1209 754.692 27 1027 rostralmiddlefrontal 8663 5191.246 28 1028 superiorfrontal 10069 6128.835 29 1029 superiorparietal 8280 4939.919 30 1030 superiortemporal 5190 3345.542 31 1031 supramarginal 5740 3615.718 32 1032 frontalpole 274 165.911 33 1033 temporalpole 609 406.051 34 1034 transversetemporal 754 405.650 35 1035 insula 3270 2030.066 Reporting on 34 segmentations mri_segstats done Cleaning up #----------------------------------------- #@# Parcellation Stats lh Fri Dec 11 01:05:22 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mris_anatomical_stats -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab T40_OM_Post lh white computing statistics for each annotation in ../label/lh.aparc.annot. reading volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white... reading input pial surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.pial... reading input white surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1212 854 1747 2.148 0.394 0.119 0.035 10 1.9 bankssts 1210 769 2353 2.872 0.587 0.166 0.067 32 3.7 caudalanteriorcingulate 3837 2259 5491 2.330 0.486 0.148 0.133 312 15.6 caudalmiddlefrontal 2169 1232 2358 1.752 0.429 0.152 0.075 43 7.4 cuneus 614 395 1601 2.819 1.052 0.184 0.118 20 3.1 entorhinal 4002 2595 7223 2.368 0.603 0.164 0.085 158 15.1 fusiform 5998 3845 10087 2.339 0.542 0.149 0.057 103 13.6 inferiorparietal 4865 3247 11142 2.700 0.679 0.168 0.127 226 31.9 inferiortemporal 1509 886 2092 2.223 0.668 0.155 0.097 55 6.5 isthmuscingulate 7437 4380 9709 2.062 0.515 0.153 0.072 146 23.0 lateraloccipital 3480 2266 6055 2.400 0.676 0.187 0.107 89 15.6 lateralorbitofrontal 3724 2325 4814 1.892 0.594 0.169 0.094 94 15.5 lingual 2866 1757 4571 2.314 0.794 0.172 0.129 93 12.8 medialorbitofrontal 3912 2561 7792 2.594 0.579 0.141 0.060 67 9.5 middletemporal 900 595 1934 2.716 0.892 0.145 0.064 16 2.5 parahippocampal 2338 1352 3317 2.249 0.609 0.141 0.176 80 8.7 paracentral 2812 1715 4371 2.290 0.529 0.142 0.109 85 12.2 parsopercularis 851 532 1648 2.395 0.642 0.199 0.192 101 5.3 parsorbitalis 1494 994 2639 2.308 0.488 0.140 0.058 21 3.7 parstriangularis 1823 1178 1826 1.654 0.503 0.176 0.098 49 8.0 pericalcarine 6446 3768 7703 1.893 0.532 0.145 0.072 125 21.4 postcentral 1593 1034 2798 2.402 0.648 0.168 0.077 37 5.1 posteriorcingulate 7437 4412 10406 2.241 0.697 0.150 0.110 187 37.8 precentral 5626 3655 8797 2.258 0.623 0.151 0.062 101 14.9 precuneus 1209 755 2588 2.836 0.777 0.179 0.149 201 9.6 rostralanteriorcingulate 8663 5191 12543 2.124 0.511 0.151 0.171 709 37.6 rostralmiddlefrontal 10069 6129 17029 2.451 0.637 0.154 0.143 311 46.2 superiorfrontal 8280 4940 11838 2.198 0.563 0.137 0.090 209 39.4 superiorparietal 5190 3346 9542 2.447 0.641 0.143 0.116 283 23.6 superiortemporal 5740 3616 8927 2.220 0.557 0.151 0.089 362 24.6 supramarginal 274 166 649 2.703 0.421 0.192 0.141 12 2.1 frontalpole 609 406 1926 3.113 0.868 0.205 0.125 22 3.4 temporalpole 754 406 849 1.972 0.359 0.152 0.105 20 3.0 transversetemporal 3270 2030 6013 2.775 0.830 0.152 0.128 112 16.2 insula #----------------------------------------- #@# Cortical Parc 2 lh Fri Dec 11 01:05:34 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 T40_OM_Post lh ../surf/lh.sphere.reg /cdrom/Marco/freesurfer/average/lh.destrieux.simple.2009-07-29.gcs ../label/lh.aparc.a2009s.annot setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading atlas from /cdrom/Marco/freesurfer/average/lh.destrieux.simple.2009-07-29.gcs... reading color table from GCSA file.... average std = 3.9 0.2 using min determinant for regularization = 0.000 0 singular and 1066 ill-conditioned covariance matrices regularized input 1: CURVATURE FILE, flags 0, avgs 0, name sulc input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 62 labels changed using aseg relabeling using gibbs priors... 000: 8738 changed, 130281 examined... 001: 2118 changed, 33495 examined... 002: 682 changed, 10900 examined... 003: 295 changed, 3758 examined... 004: 148 changed, 1681 examined... 005: 72 changed, 821 examined... 006: 36 changed, 404 examined... 007: 21 changed, 205 examined... 008: 10 changed, 100 examined... 009: 4 changed, 62 examined... 010: 3 changed, 22 examined... 011: 2 changed, 22 examined... 012: 5 changed, 15 examined... 013: 3 changed, 25 examined... 014: 1 changed, 17 examined... 015: 0 changed, 6 examined... 21 labels changed using aseg 000: 278 total segments, 195 labels (2058 vertices) changed 001: 96 total segments, 13 labels (98 vertices) changed 002: 83 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 145 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... 684 vertices marked for relabeling... 684 labels changed in reclassification. writing output to ../label/lh.aparc.a2009s.annot... classification took 0 minutes and 31 seconds. #----------------------------------------- #@# Parcellation Stats 2 lh Fri Dec 11 01:06:06 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mris_anatomical_stats -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.a2009s.stats -b -a ../label/lh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab T40_OM_Post lh white computing statistics for each annotation in ../label/lh.aparc.a2009s.annot. reading volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white... reading input pial surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.pial... reading input white surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 76 entries read (originally /autofs/space/birn_044/users/christophe_atlas_rebuild//scripts_2008/Simple_surface_labels2009.txt) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1229 817 2103 2.244 0.497 0.160 0.061 26 3.4 G_and_S_frontomargin 1566 966 2329 2.170 0.551 0.162 0.083 31 5.6 G_and_S_occipital_inf 1752 1001 2796 2.246 0.716 0.146 0.086 58 5.7 G_and_S_paracentral 1553 912 2318 2.204 0.566 0.159 0.087 33 5.7 G_and_S_subcentral 693 439 1503 2.471 0.531 0.187 0.116 23 3.2 G_and_S_transv_frontopol 2702 1744 4608 2.424 0.723 0.161 0.101 224 13.5 G_and_S_cingul-Ant 1129 779 2222 2.702 0.595 0.141 0.058 19 2.8 G_and_S_cingul-Mid-Ant 1239 837 2211 2.442 0.599 0.138 0.052 16 2.6 G_and_S_cingul-Mid-Post 495 306 942 2.520 0.501 0.173 0.087 9 2.0 G_cingul-Post-dorsal 260 154 354 2.114 0.644 0.182 0.154 30 2.2 G_cingul-Post-ventral 1864 994 2134 1.794 0.465 0.170 0.105 54 9.6 G_cuneus 1786 1050 3034 2.362 0.561 0.151 0.117 42 7.7 G_front_inf-Opercular 289 175 636 2.672 0.520 0.212 0.139 11 1.6 G_front_inf-Orbital 979 631 2046 2.477 0.450 0.157 0.072 16 3.0 G_front_inf-Triangul 4847 2628 7758 2.338 0.507 0.163 0.310 880 31.5 G_front_middle 7622 4348 13431 2.541 0.663 0.166 0.208 317 45.8 G_front_sup 460 258 932 2.720 0.596 0.183 0.173 21 2.8 G_Ins_lg_and_S_cent_ins 755 399 1903 3.438 0.707 0.206 0.253 65 8.1 G_insular_short 1986 1160 3813 2.498 0.476 0.161 0.071 55 6.0 G_occipital_middle 1468 794 2053 2.201 0.566 0.138 0.062 26 4.0 G_occipital_sup 1409 856 2753 2.531 0.493 0.168 0.078 37 4.8 G_oc-temp_lat-fusifor 2755 1601 3620 1.914 0.599 0.181 0.115 91 14.1 G_oc-temp_med-Lingual 1211 774 3058 2.858 0.889 0.171 0.101 37 5.5 G_oc-temp_med-Parahip 2363 1472 4706 2.476 0.681 0.201 0.157 152 14.2 G_orbital 2347 1364 4473 2.574 0.539 0.159 0.076 57 7.5 G_pariet_inf-Angular 3083 1889 5363 2.322 0.577 0.160 0.084 80 11.0 G_pariet_inf-Supramar 3424 1931 5820 2.406 0.568 0.146 0.143 148 27.3 G_parietal_sup 2467 1266 2873 1.922 0.521 0.152 0.084 66 9.7 G_postcentral 3032 1524 4462 2.456 0.714 0.154 0.177 123 25.2 G_precentral 3039 1862 5714 2.515 0.530 0.171 0.081 77 10.7 G_precuneus 958 575 1851 2.471 0.616 0.187 0.110 38 4.4 G_rectus 287 181 541 3.100 1.129 0.167 0.235 11 1.2 G_subcallosal 523 261 612 2.014 0.333 0.168 0.184 119 4.9 G_temp_sup-G_T_transv 2147 1342 5072 2.686 0.589 0.172 0.185 116 13.3 G_temp_sup-Lateral 368 231 763 3.261 0.796 0.148 0.065 5 1.0 G_temp_sup-Plan_polar 547 377 969 2.198 0.579 0.126 0.043 7 1.1 G_temp_sup-Plan_tempo 2849 1905 7833 2.976 0.613 0.187 0.166 174 25.7 G_temporal_inf 2438 1517 5580 2.762 0.576 0.154 0.070 56 6.7 G_temporal_middle 248 186 378 2.118 0.437 0.129 0.039 2 0.4 Lat_Fis-ant-Horizont 135 93 183 2.157 0.565 0.134 0.040 1 0.2 Lat_Fis-ant-Vertical 1115 726 1245 1.963 0.424 0.147 0.149 287 10.7 Lat_Fis-post 2732 1575 3359 1.934 0.547 0.158 0.080 57 9.6 Pole_occipital 1686 1159 4573 2.817 0.893 0.208 0.147 143 11.3 Pole_temporal 2244 1529 2563 1.855 0.657 0.155 0.059 34 5.6 S_calcarine 2819 2001 3008 1.683 0.537 0.150 0.058 33 7.5 S_central 1009 693 1392 2.261 0.683 0.120 0.036 10 1.5 S_cingul-Marginalis 431 285 741 2.867 0.606 0.189 0.119 10 2.5 S_circular_insula_ant 1443 968 2046 2.271 0.780 0.109 0.035 10 2.1 S_circular_insula_inf 1776 1214 2432 2.300 0.499 0.116 0.055 17 3.4 S_circular_insula_sup 1159 789 1787 2.140 0.622 0.124 0.052 15 2.2 S_collat_transv_ant 313 201 309 1.874 0.512 0.148 0.053 3 0.7 S_collat_transv_post 3218 2001 4180 2.086 0.469 0.124 0.063 89 9.6 S_front_inf 1371 841 1478 1.867 0.448 0.136 0.074 19 3.7 S_front_middle 2567 1660 3505 2.195 0.459 0.137 0.059 30 6.7 S_front_sup 341 229 345 1.749 0.342 0.120 0.028 3 0.5 S_interm_prim-Jensen 3224 2151 3883 2.024 0.439 0.128 0.052 34 6.7 S_intrapariet_and_P_trans 1166 725 1187 1.837 0.387 0.139 0.054 13 2.6 S_oc_middle_and_Lunatus 1248 751 1502 2.139 0.403 0.124 0.058 15 3.8 S_oc_sup_and_transversal 713 475 878 2.122 0.391 0.150 0.058 10 1.6 S_occipital_ant 566 378 804 2.069 0.442 0.154 0.083 10 1.7 S_oc-temp_lat 1515 1056 2163 2.098 0.558 0.135 0.043 14 2.9 S_oc-temp_med_and_Lingual 355 238 435 1.701 0.434 0.151 0.053 5 0.9 S_orbital_lateral 644 450 976 2.055 0.679 0.151 0.095 15 3.0 S_orbital_med-olfact 1300 851 1928 2.223 0.681 0.172 0.086 26 4.8 S_orbital-H_Shaped 1904 1261 2160 1.769 0.488 0.122 0.039 17 3.2 S_parieto_occipital 1233 687 1239 2.234 0.868 0.170 0.096 39 4.6 S_pericallosal 2899 1861 3465 2.023 0.466 0.132 0.054 33 6.6 S_postcentral 1513 972 1909 2.154 0.421 0.131 0.062 24 4.1 S_precentral-inf-part 1223 750 1374 2.042 0.587 0.148 0.066 19 3.6 S_precentral-sup-part 673 412 990 2.293 0.734 0.165 0.147 19 2.0 S_suborbital 943 662 1339 2.060 0.462 0.137 0.041 10 1.6 S_subparietal 1202 831 1700 2.263 0.495 0.123 0.039 10 2.2 S_temporal_inf 4924 3344 7152 2.211 0.471 0.129 0.049 58 10.0 S_temporal_sup 440 267 580 2.134 0.349 0.113 0.054 6 1.1 S_temporal_transverse #----------------------------------------- #@# Cortical Parc 3 lh Fri Dec 11 01:06:14 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 T40_OM_Post lh ../surf/lh.sphere.reg /cdrom/Marco/freesurfer/average/lh.DKTatlas40.gcs ../label/lh.aparc.DKTatlas40.annot setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading atlas from /cdrom/Marco/freesurfer/average/lh.DKTatlas40.gcs... reading color table from GCSA file.... average std = 0.9 using min determinant for regularization = 0.007 0 singular and 293 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 914 labels changed using aseg relabeling using gibbs priors... 000: 2627 changed, 130281 examined... 001: 630 changed, 11225 examined... 002: 152 changed, 3380 examined... 003: 58 changed, 911 examined... 004: 30 changed, 314 examined... 005: 18 changed, 179 examined... 006: 10 changed, 113 examined... 007: 4 changed, 60 examined... 008: 4 changed, 28 examined... 009: 0 changed, 25 examined... 184 labels changed using aseg 000: 59 total segments, 26 labels (376 vertices) changed 001: 34 total segments, 1 labels (2 vertices) changed 002: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 35 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 432 vertices marked for relabeling... 432 labels changed in reclassification. writing output to ../label/lh.aparc.DKTatlas40.annot... classification took 0 minutes and 27 seconds. #----------------------------------------- #@# Parcellation Stats 3 lh Fri Dec 11 01:06:41 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mris_anatomical_stats -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.DKTatlas40.stats -b -a ../label/lh.aparc.DKTatlas40.annot -c ../label/aparc.annot.DKTatlas40.ctab T40_OM_Post lh white computing statistics for each annotation in ../label/lh.aparc.DKTatlas40.annot. reading volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white... reading input pial surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.pial... reading input white surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 36 entries read (originally /Applications/freesurfer/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.DKTatlas40.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1568 1030 2801 2.689 0.626 0.158 0.060 35 4.2 caudalanteriorcingulate 3912 2295 5569 2.318 0.496 0.148 0.133 314 16.0 caudalmiddlefrontal 2854 1663 3312 1.822 0.484 0.142 0.066 49 8.6 cuneus 593 385 1522 2.727 1.060 0.175 0.112 18 2.8 entorhinal 3553 2286 6365 2.387 0.597 0.155 0.073 77 11.0 fusiform 5605 3584 9421 2.359 0.537 0.149 0.056 96 12.7 inferiorparietal 4874 3287 11219 2.675 0.711 0.175 0.137 295 34.7 inferiortemporal 1526 902 2140 2.232 0.665 0.155 0.096 55 6.5 isthmuscingulate 7847 4561 10351 2.078 0.524 0.151 0.073 157 25.7 lateraloccipital 3832 2488 6902 2.398 0.692 0.186 0.109 107 17.6 lateralorbitofrontal 3678 2296 4766 1.891 0.602 0.168 0.087 91 13.6 lingual 2470 1513 4084 2.322 0.801 0.180 0.142 84 12.1 medialorbitofrontal 5377 3524 10276 2.533 0.572 0.142 0.059 92 13.0 middletemporal 865 571 1833 2.700 0.887 0.145 0.065 15 2.4 parahippocampal 2671 1558 3807 2.297 0.639 0.146 0.177 109 10.6 paracentral 2443 1486 3788 2.336 0.513 0.144 0.116 79 11.4 parsopercularis 933 594 1747 2.408 0.554 0.193 0.172 95 5.5 parsorbitalis 2091 1346 3289 2.139 0.526 0.137 0.067 36 6.5 parstriangularis 1881 1209 1893 1.655 0.504 0.181 0.113 54 10.1 pericalcarine 7107 4200 8692 1.919 0.567 0.144 0.071 133 22.8 postcentral 1684 1107 2906 2.385 0.639 0.167 0.076 38 5.2 posteriorcingulate 7329 4355 10288 2.250 0.694 0.151 0.111 186 37.4 precentral 5512 3538 8823 2.304 0.623 0.153 0.066 102 15.9 precuneus 1570 987 3071 2.760 0.778 0.172 0.129 208 10.5 rostralanteriorcingulate 5926 3549 8660 2.148 0.515 0.150 0.207 643 26.1 rostralmiddlefrontal 11844 7130 19792 2.391 0.631 0.154 0.137 344 54.8 superiorfrontal 6653 4014 9279 2.173 0.527 0.137 0.094 181 33.0 superiorparietal 6849 4477 12895 2.452 0.681 0.147 0.108 317 29.0 superiortemporal 5645 3557 8713 2.211 0.557 0.152 0.090 361 24.4 supramarginal 699 372 773 1.961 0.364 0.150 0.084 19 2.9 transversetemporal 2822 1725 5403 2.853 0.810 0.148 0.125 99 13.6 insula #-------------------------------------------- #@# Tessellate rh Fri Dec 11 01:06:50 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mri_pretess ../mri/filled.mgz 127 ../mri/norm.mgz ../mri/filled-pretess127.mgz Iteration Number : 1 pass 1 (xy+): 1 found - 1 modified | TOTAL: 1 pass 2 (xy+): 0 found - 1 modified | TOTAL: 1 pass 1 (xy-): 0 found - 0 modified | TOTAL: 1 pass 1 (yz+): 1 found - 1 modified | TOTAL: 2 pass 2 (yz+): 0 found - 1 modified | TOTAL: 2 pass 1 (yz-): 0 found - 0 modified | TOTAL: 2 pass 1 (xz+): 1 found - 1 modified | TOTAL: 3 pass 2 (xz+): 0 found - 1 modified | TOTAL: 3 pass 1 (xz-): 0 found - 0 modified | TOTAL: 3 Iteration Number : 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 1 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 1 found - 1 modified | TOTAL: 1 pass 2 (+-): 0 found - 1 modified | TOTAL: 1 pass 1 (--): 0 found - 0 modified | TOTAL: 1 pass 1 (-+): 0 found - 0 modified | TOTAL: 1 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 4 (out of 277953: 0.001439) Ambiguous edge configurations... mri_pretess done mri_tessellate ../mri/filled-pretess127.mgz 127 ../surf/rh.orig.nofix $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ slice 40: 43 vertices, 56 faces slice 50: 3221 vertices, 3412 faces slice 60: 11468 vertices, 11798 faces slice 70: 22872 vertices, 23277 faces slice 80: 34386 vertices, 34758 faces slice 90: 45617 vertices, 45988 faces slice 100: 57173 vertices, 57538 faces slice 110: 68090 vertices, 68496 faces slice 120: 79592 vertices, 80008 faces slice 130: 91098 vertices, 91538 faces slice 140: 102486 vertices, 102951 faces slice 150: 111891 vertices, 112253 faces slice 160: 120223 vertices, 120579 faces slice 170: 127024 vertices, 127354 faces slice 180: 132268 vertices, 132567 faces slice 190: 135486 vertices, 135668 faces slice 200: 135632 vertices, 135770 faces slice 210: 135632 vertices, 135770 faces slice 220: 135632 vertices, 135770 faces slice 230: 135632 vertices, 135770 faces slice 240: 135632 vertices, 135770 faces slice 250: 135632 vertices, 135770 faces using the conformed surface RAS to save vertex points... writing ../surf/rh.orig.nofix using vox2ras matrix: -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; rm -f ../mri/filled-pretess127.mgz mris_extract_main_component ../surf/rh.orig.nofix ../surf/rh.orig.nofix counting number of connected components... 135632 voxel in cpt #1: X=-138 [v=135632,e=407310,f=271540] located at (29.725058, -18.280294, -0.531165) For the whole surface: X=-138 [v=135632,e=407310,f=271540] One single component has been found nothing to do done #-------------------------------------------- #@# Smooth1 rh Fri Dec 11 01:06:54 UTC 2015 mris_smooth -nw -seed 1234 ../surf/rh.orig.nofix ../surf/rh.smoothwm.nofix /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts setting seed for random number generator to 1234 smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation1 rh Fri Dec 11 01:06:56 UTC 2015 mris_inflate -no-save-sulc ../surf/rh.smoothwm.nofix ../surf/rh.inflated.nofix /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts avg radius = 46.0 mm, total surface area = 70068 mm^2 writing inflated surface to ../surf/rh.inflated.nofix inflation took 0.3 minutes Not saving sulc step 000: RMS=0.109 (target=0.015) step 005: RMS=0.082 (target=0.015) step 010: RMS=0.065 (target=0.015) step 015: RMS=0.058 (target=0.015) step 020: RMS=0.052 (target=0.015) step 025: RMS=0.047 (target=0.015) step 030: RMS=0.044 (target=0.015) step 035: RMS=0.042 (target=0.015) step 040: RMS=0.041 (target=0.015) step 045: RMS=0.040 (target=0.015) step 050: RMS=0.038 (target=0.015) step 055: RMS=0.037 (target=0.015) step 060: RMS=0.037 (target=0.015) inflation complete. Not saving sulc #-------------------------------------------- #@# QSphere rh Fri Dec 11 01:07:17 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mris_sphere -q -seed 1234 ../surf/rh.inflated.nofix ../surf/rh.qsphere.nofix doing quick spherical unfolding. setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... vertex spacing 1.00 +- 0.57 (0.00-->6.29) (max @ vno 62377 --> 63338) face area 0.03 +- 0.04 (-0.08-->0.54) scaling brain by 0.344... inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=174.984, avgs=0 005/300: dt: 0.9000, rms radial error=174.726, avgs=0 010/300: dt: 0.9000, rms radial error=174.173, avgs=0 015/300: dt: 0.9000, rms radial error=173.448, avgs=0 020/300: dt: 0.9000, rms radial error=172.623, avgs=0 025/300: dt: 0.9000, rms radial error=171.742, avgs=0 030/300: dt: 0.9000, rms radial error=170.829, avgs=0 035/300: dt: 0.9000, rms radial error=169.901, avgs=0 040/300: dt: 0.9000, rms radial error=168.964, avgs=0 045/300: dt: 0.9000, rms radial error=168.026, avgs=0 050/300: dt: 0.9000, rms radial error=167.089, avgs=0 055/300: dt: 0.9000, rms radial error=166.156, avgs=0 060/300: dt: 0.9000, rms radial error=165.226, avgs=0 065/300: dt: 0.9000, rms radial error=164.300, avgs=0 070/300: dt: 0.9000, rms radial error=163.376, avgs=0 075/300: dt: 0.9000, rms radial error=162.457, avgs=0 080/300: dt: 0.9000, rms radial error=161.543, avgs=0 085/300: dt: 0.9000, rms radial error=160.635, avgs=0 090/300: dt: 0.9000, rms radial error=159.731, avgs=0 095/300: dt: 0.9000, rms radial error=158.832, avgs=0 100/300: dt: 0.9000, rms radial error=157.938, avgs=0 105/300: dt: 0.9000, rms radial error=157.049, avgs=0 110/300: dt: 0.9000, rms radial error=156.165, avgs=0 115/300: dt: 0.9000, rms radial error=155.285, avgs=0 120/300: dt: 0.9000, rms radial error=154.410, avgs=0 125/300: dt: 0.9000, rms radial error=153.539, avgs=0 130/300: dt: 0.9000, rms radial error=152.674, avgs=0 135/300: dt: 0.9000, rms radial error=151.813, avgs=0 140/300: dt: 0.9000, rms radial error=150.957, avgs=0 145/300: dt: 0.9000, rms radial error=150.106, avgs=0 150/300: dt: 0.9000, rms radial error=149.261, avgs=0 155/300: dt: 0.9000, rms radial error=148.420, avgs=0 160/300: dt: 0.9000, rms radial error=147.584, avgs=0 165/300: dt: 0.9000, rms radial error=146.753, avgs=0 170/300: dt: 0.9000, rms radial error=145.927, avgs=0 175/300: dt: 0.9000, rms radial error=145.105, avgs=0 180/300: dt: 0.9000, rms radial error=144.287, avgs=0 185/300: dt: 0.9000, rms radial error=143.475, avgs=0 190/300: dt: 0.9000, rms radial error=142.667, avgs=0 195/300: dt: 0.9000, rms radial error=141.864, avgs=0 200/300: dt: 0.9000, rms radial error=141.065, avgs=0 205/300: dt: 0.9000, rms radial error=140.270, avgs=0 210/300: dt: 0.9000, rms radial error=139.480, avgs=0 215/300: dt: 0.9000, rms radial error=138.694, avgs=0 220/300: dt: 0.9000, rms radial error=137.913, avgs=0 225/300: dt: 0.9000, rms radial error=137.135, avgs=0 230/300: dt: 0.9000, rms radial error=136.362, avgs=0 235/300: dt: 0.9000, rms radial error=135.594, avgs=0 240/300: dt: 0.9000, rms radial error=134.829, avgs=0 245/300: dt: 0.9000, rms radial error=134.069, avgs=0 250/300: dt: 0.9000, rms radial error=133.313, avgs=0 255/300: dt: 0.9000, rms radial error=132.562, avgs=0 260/300: dt: 0.9000, rms radial error=131.814, avgs=0 265/300: dt: 0.9000, rms radial error=131.071, avgs=0 270/300: dt: 0.9000, rms radial error=130.331, avgs=0 275/300: dt: 0.9000, rms radial error=129.596, avgs=0 280/300: dt: 0.9000, rms radial error=128.865, avgs=0 285/300: dt: 0.9000, rms radial error=128.138, avgs=0 290/300: dt: 0.9000, rms radial error=127.415, avgs=0 295/300: dt: 0.9000, rms radial error=126.696, avgs=0 300/300: dt: 0.9000, rms radial error=125.981, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 15364.20 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00009 epoch 2 (K=40.0), pass 1, starting sse = 2420.06 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00013 epoch 3 (K=160.0), pass 1, starting sse = 233.05 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.03/10 = 0.00301 epoch 4 (K=640.0), pass 1, starting sse = 19.76 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.06/12 = 0.00531 final writing spherical brain to ../surf/rh.qsphere.nofix spherical transformation took 0.04 hours distance error %100000.00 #-------------------------------------------- #@# Fix Topology rh Fri Dec 11 01:09:50 UTC 2015 cp ../surf/rh.orig.nofix ../surf/rh.orig cp ../surf/rh.inflated.nofix ../surf/rh.inflated /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mris_fix_topology -mgz -sphere qsphere.nofix -ga -seed 1234 T40_OM_Post rh reading spherical homeomorphism from 'qsphere.nofix' using genetic algorithm with optimized parameters setting seed for random number genererator to 1234 ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ before topology correction, eno=-138 (nv=135632, nf=271540, ne=407310, g=70) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 11 iterations marking ambiguous vertices... 8038 ambiguous faces found in tessellation segmenting defects... 71 defects found, arbitrating ambiguous regions... analyzing neighboring defects... -merging segment 24 into 21 -merging segment 51 into 45 69 defects to be corrected 0 vertices coincident reading input surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Computing Initial Surface Statistics -face loglikelihood: -8.9628 (-4.4814) -vertex loglikelihood: -5.9727 (-2.9863) -normal dot loglikelihood: -3.5288 (-3.5288) -quad curv loglikelihood: -6.5971 (-3.2986) Total Loglikelihood : -25.0615 CORRECTING DEFECT 0 (vertices=41, convex hull=54) After retessellation of defect 0, euler #=-66 (130714,390132,259352) : difference with theory (-66) = 0 CORRECTING DEFECT 1 (vertices=60, convex hull=100) After retessellation of defect 1, euler #=-65 (130725,390208,259418) : difference with theory (-65) = 0 CORRECTING DEFECT 2 (vertices=167, convex hull=61) After retessellation of defect 2, euler #=-64 (130744,390292,259484) : difference with theory (-64) = 0 CORRECTING DEFECT 3 (vertices=6, convex hull=15) After retessellation of defect 3, euler #=-63 (130745,390299,259491) : difference with theory (-63) = 0 CORRECTING DEFECT 4 (vertices=51, convex hull=99) After retessellation of defect 4, euler #=-62 (130770,390420,259588) : difference with theory (-62) = 0 CORRECTING DEFECT 5 (vertices=28, convex hull=34) After retessellation of defect 5, euler #=-61 (130774,390444,259609) : difference with theory (-61) = 0 CORRECTING DEFECT 6 (vertices=22, convex hull=55) After retessellation of defect 6, euler #=-60 (130788,390510,259662) : difference with theory (-60) = 0 CORRECTING DEFECT 7 (vertices=48, convex hull=52) After retessellation of defect 7, euler #=-59 (130805,390581,259717) : difference with theory (-59) = 0 CORRECTING DEFECT 8 (vertices=50, convex hull=52) After retessellation of defect 8, euler #=-58 (130822,390650,259770) : difference with theory (-58) = 0 CORRECTING DEFECT 9 (vertices=17, convex hull=32) After retessellation of defect 9, euler #=-57 (130824,390666,259785) : difference with theory (-57) = 0 CORRECTING DEFECT 10 (vertices=43, convex hull=68) After retessellation of defect 10, euler #=-56 (130835,390723,259832) : difference with theory (-56) = 0 CORRECTING DEFECT 11 (vertices=24, convex hull=34) After retessellation of defect 11, euler #=-55 (130845,390764,259864) : difference with theory (-55) = 0 CORRECTING DEFECT 12 (vertices=65, convex hull=96) After retessellation of defect 12, euler #=-54 (130894,390955,260007) : difference with theory (-54) = 0 CORRECTING DEFECT 13 (vertices=71, convex hull=90) After retessellation of defect 13, euler #=-53 (130930,391100,260117) : difference with theory (-53) = 0 CORRECTING DEFECT 14 (vertices=37, convex hull=29) After retessellation of defect 14, euler #=-52 (130933,391119,260134) : difference with theory (-52) = 0 CORRECTING DEFECT 15 (vertices=37, convex hull=58) After retessellation of defect 15, euler #=-51 (130955,391209,260203) : difference with theory (-51) = 0 CORRECTING DEFECT 16 (vertices=242, convex hull=86) After retessellation of defect 16, euler #=-50 (130972,391300,260278) : difference with theory (-50) = 0 CORRECTING DEFECT 17 (vertices=30, convex hull=55) After retessellation of defect 17, euler #=-49 (130990,391375,260336) : difference with theory (-49) = 0 CORRECTING DEFECT 18 (vertices=25, convex hull=62) After retessellation of defect 18, euler #=-48 (131006,391448,260394) : difference with theory (-48) = 0 CORRECTING DEFECT 19 (vertices=104, convex hull=77) After retessellation of defect 19, euler #=-47 (131014,391511,260450) : difference with theory (-47) = 0 CORRECTING DEFECT 20 (vertices=43, convex hull=26) After retessellation of defect 20, euler #=-46 (131020,391535,260469) : difference with theory (-46) = 0 CORRECTING DEFECT 21 (vertices=278, convex hull=264) After retessellation of defect 21, euler #=-44 (131056,391770,260670) : difference with theory (-45) = -1 CORRECTING DEFECT 22 (vertices=77, convex hull=68) After retessellation of defect 22, euler #=-43 (131079,391871,260749) : difference with theory (-44) = -1 CORRECTING DEFECT 23 (vertices=26, convex hull=51) After retessellation of defect 23, euler #=-42 (131096,391943,260805) : difference with theory (-43) = -1 CORRECTING DEFECT 24 (vertices=55, convex hull=76) After retessellation of defect 24, euler #=-41 (131106,392004,260857) : difference with theory (-42) = -1 CORRECTING DEFECT 25 (vertices=31, convex hull=53) After retessellation of defect 25, euler #=-40 (131123,392077,260914) : difference with theory (-41) = -1 CORRECTING DEFECT 26 (vertices=98, convex hull=63) After retessellation of defect 26, euler #=-39 (131138,392148,260971) : difference with theory (-40) = -1 CORRECTING DEFECT 27 (vertices=8, convex hull=19) After retessellation of defect 27, euler #=-38 (131139,392157,260980) : difference with theory (-39) = -1 CORRECTING DEFECT 28 (vertices=124, convex hull=113) After retessellation of defect 28, euler #=-37 (131196,392378,261145) : difference with theory (-38) = -1 CORRECTING DEFECT 29 (vertices=139, convex hull=41) After retessellation of defect 29, euler #=-36 (131205,392427,261186) : difference with theory (-37) = -1 CORRECTING DEFECT 30 (vertices=27, convex hull=34) After retessellation of defect 30, euler #=-35 (131208,392449,261206) : difference with theory (-36) = -1 CORRECTING DEFECT 31 (vertices=43, convex hull=44) After retessellation of defect 31, euler #=-34 (131219,392495,261242) : difference with theory (-35) = -1 CORRECTING DEFECT 32 (vertices=15, convex hull=38) After retessellation of defect 32, euler #=-33 (131227,392531,261271) : difference with theory (-34) = -1 CORRECTING DEFECT 33 (vertices=18, convex hull=37) After retessellation of defect 33, euler #=-32 (131235,392566,261299) : difference with theory (-33) = -1 CORRECTING DEFECT 34 (vertices=110, convex hull=83) After retessellation of defect 34, euler #=-31 (131258,392673,261384) : difference with theory (-32) = -1 CORRECTING DEFECT 35 (vertices=17, convex hull=34) After retessellation of defect 35, euler #=-30 (131262,392695,261403) : difference with theory (-31) = -1 CORRECTING DEFECT 36 (vertices=336, convex hull=181) After retessellation of defect 36, euler #=-30 (131331,393005,261644) : difference with theory (-30) = 0 CORRECTING DEFECT 37 (vertices=12, convex hull=17) After retessellation of defect 37, euler #=-29 (131333,393017,261655) : difference with theory (-29) = 0 CORRECTING DEFECT 38 (vertices=40, convex hull=45) After retessellation of defect 38, euler #=-28 (131344,393067,261695) : difference with theory (-28) = 0 CORRECTING DEFECT 39 (vertices=368, convex hull=174) After retessellation of defect 39, euler #=-27 (131385,393272,261860) : difference with theory (-27) = 0 CORRECTING DEFECT 40 (vertices=24, convex hull=43) After retessellation of defect 40, euler #=-26 (131394,393313,261893) : difference with theory (-26) = 0 CORRECTING DEFECT 41 (vertices=88, convex hull=73) After retessellation of defect 41, euler #=-25 (131427,393446,261994) : difference with theory (-25) = 0 CORRECTING DEFECT 42 (vertices=199, convex hull=133) After retessellation of defect 42, euler #=-24 (131485,393682,262173) : difference with theory (-24) = 0 CORRECTING DEFECT 43 (vertices=565, convex hull=190) After retessellation of defect 43, euler #=-23 (131575,394049,262451) : difference with theory (-23) = 0 CORRECTING DEFECT 44 (vertices=124, convex hull=135) After retessellation of defect 44, euler #=-21 (131616,394243,262606) : difference with theory (-22) = -1 CORRECTING DEFECT 45 (vertices=69, convex hull=84) After retessellation of defect 45, euler #=-21 (131652,394392,262719) : difference with theory (-21) = 0 CORRECTING DEFECT 46 (vertices=13, convex hull=27) After retessellation of defect 46, euler #=-20 (131654,394404,262730) : difference with theory (-20) = 0 CORRECTING DEFECT 47 (vertices=62, convex hull=61) After retessellation of defect 47, euler #=-19 (131678,394503,262806) : difference with theory (-19) = 0 CORRECTING DEFECT 48 (vertices=14, convex hull=30) After retessellation of defect 48, euler #=-18 (131680,394518,262820) : difference with theory (-18) = 0 CORRECTING DEFECT 49 (vertices=8, convex hull=31) After retessellation of defect 49, euler #=-17 (131682,394530,262831) : difference with theory (-17) = 0 CORRECTING DEFECT 50 (vertices=34, convex hull=63) After retessellation of defect 50, euler #=-16 (131699,394609,262894) : difference with theory (-16) = 0 CORRECTING DEFECT 51 (vertices=129, convex hull=111) After retessellation of defect 51, euler #=-15 (131753,394828,263060) : difference with theory (-15) = 0 CORRECTING DEFECT 52 (vertices=41, convex hull=79) After retessellation of defect 52, euler #=-14 (131779,394935,263142) : difference with theory (-14) = 0 CORRECTING DEFECT 53 (vertices=10, convex hull=31) After retessellation of defect 53, euler #=-13 (131780,394947,263154) : difference with theory (-13) = 0 CORRECTING DEFECT 54 (vertices=75, convex hull=102) After retessellation of defect 54, euler #=-12 (131824,395123,263287) : difference with theory (-12) = 0 CORRECTING DEFECT 55 (vertices=42, convex hull=57) After retessellation of defect 55, euler #=-11 (131836,395183,263336) : difference with theory (-11) = 0 CORRECTING DEFECT 56 (vertices=7, convex hull=37) After retessellation of defect 56, euler #=-10 (131837,395198,263351) : difference with theory (-10) = 0 CORRECTING DEFECT 57 (vertices=20, convex hull=68) After retessellation of defect 57, euler #=-9 (131846,395254,263399) : difference with theory (-9) = 0 CORRECTING DEFECT 58 (vertices=64, convex hull=109) After retessellation of defect 58, euler #=-8 (131864,395354,263482) : difference with theory (-8) = 0 CORRECTING DEFECT 59 (vertices=38, convex hull=54) After retessellation of defect 59, euler #=-7 (131881,395425,263537) : difference with theory (-7) = 0 CORRECTING DEFECT 60 (vertices=26, convex hull=63) After retessellation of defect 60, euler #=-6 (131891,395478,263581) : difference with theory (-6) = 0 CORRECTING DEFECT 61 (vertices=31, convex hull=65) After retessellation of defect 61, euler #=-5 (131908,395552,263639) : difference with theory (-5) = 0 CORRECTING DEFECT 62 (vertices=45, convex hull=76) After retessellation of defect 62, euler #=-4 (131933,395658,263721) : difference with theory (-4) = 0 CORRECTING DEFECT 63 (vertices=26, convex hull=59) After retessellation of defect 63, euler #=-3 (131944,395715,263768) : difference with theory (-3) = 0 CORRECTING DEFECT 64 (vertices=55, convex hull=90) After retessellation of defect 64, euler #=-2 (131958,395793,263833) : difference with theory (-2) = 0 CORRECTING DEFECT 65 (vertices=24, convex hull=65) After retessellation of defect 65, euler #=-1 (131969,395849,263879) : difference with theory (-1) = 0 CORRECTING DEFECT 66 (vertices=25, convex hull=66) After retessellation of defect 66, euler #=0 (131984,395919,263935) : difference with theory (0) = 0 CORRECTING DEFECT 67 (vertices=20, convex hull=20) After retessellation of defect 67, euler #=1 (131988,395937,263950) : difference with theory (1) = 0 CORRECTING DEFECT 68 (vertices=23, convex hull=65) After retessellation of defect 68, euler #=2 (131997,395985,263990) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.88 +- 0.24 (0.06-->11.61) (max @ vno 109052 --> 115085) face area 0.00 +- 0.00 (0.00-->0.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.88 +- 0.24 (0.06-->11.61) (max @ vno 109052 --> 115085) face area 0.00 +- 0.00 (0.00-->0.00) tessellation finished, orienting corrected surface... 227 mutations (32.9%), 462 crossovers (67.1%), 327 vertices were eliminated building final representation... 3635 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=131997, nf=263990, ne=395985, g=0) writing corrected surface to /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.orig... 0.000 % of the vertices (0 vertices) exhibit an orientation change topology fixing took 28.6 minutes 0 defective edges removing intersecting faces 000: 431 intersecting 001: 6 intersecting mris_euler_number ../surf/rh.orig euler # = v-e+f = 2g-2: 131997 - 395985 + 263990 = 2 --> 0 holes F =2V-4: 263990 = 263994-4 (0) 2E=3F: 791970 = 791970 (0) total defect index = 0 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mris_remove_intersection ../surf/rh.orig ../surf/rh.orig intersection removal took 0.00 hours removing intersecting faces 000: 52 intersecting writing corrected surface to ../surf/rh.orig rm ../surf/rh.inflated #-------------------------------------------- #@# Make White Surf rh Fri Dec 11 01:38:30 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mris_make_surfaces -noaparc -whiteonly -mgz -T1 brain.finalsurfs T40_OM_Post rh only generating white matter surface not using aparc to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/filled.mgz... reading volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/brain.finalsurfs.mgz... reading volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... 13350 bright wm thresholded. 2609 bright non-wm voxels segmented. reading original surface position from /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.orig... computing class statistics... border white: 274904 voxels (1.64%) border gray 286178 voxels (1.71%) WM (98.0): 98.5 +- 6.5 [70.0 --> 110.0] GM (89.0) : 86.3 +- 11.6 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 71.4 (was 70) setting MAX_BORDER_WHITE to 109.5 (was 105) setting MIN_BORDER_WHITE to 83.0 (was 85) setting MAX_CSF to 59.9 (was 40) setting MAX_GRAY to 96.5 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 77.2 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 48.3 (was 40) repositioning cortical surface to gray/white boundary reading volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/aseg.mgz... smoothing T1 volume with sigma = 2.000 vertex spacing 0.81 +- 0.23 (0.01-->5.16) (max @ vno 109052 --> 115085) face area 0.27 +- 0.13 (0.00-->4.32) mean absolute distance = 0.92 +- 1.22 4851 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... smoothing contralateral hemisphere... using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=103, GM=83 mean inside = 97.4, mean outside = 84.7 smoothing surface for 5 iterations... inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group removing 2 vertex label from ripped group mean border=90.6, 106 (106) missing vertices, mean dist 0.1 [1.1 (%37.7)->0.8 (%62.3))] %35 local maxima, %60 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=ubunt, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.89 +- 0.26 (0.06-->4.84) (max @ vno 109052 --> 115085) face area 0.27 +- 0.14 (0.00-->3.16) mean absolute distance = 0.56 +- 0.91 5319 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3768226.5, rms=7.40 001: dt: 0.5000, sse=4733796.5, rms=5.093 (0.000%) 002: dt: 0.5000, sse=4848615.0, rms=3.632 (0.000%) 003: dt: 0.5000, sse=5033012.5, rms=2.819 (0.000%) 004: dt: 0.5000, sse=5151900.0, rms=2.415 (0.000%) 005: dt: 0.5000, sse=5195110.5, rms=2.221 (0.000%) 006: dt: 0.5000, sse=5223557.5, rms=2.129 (0.000%) rms = 2.08, time step reduction 1 of 3 to 0.250... 007: dt: 0.5000, sse=5240904.5, rms=2.079 (0.000%) 008: dt: 0.2500, sse=3818397.5, rms=1.701 (0.000%) 009: dt: 0.2500, sse=3681813.8, rms=1.644 (0.000%) rms = 1.64, time step reduction 2 of 3 to 0.125... 010: dt: 0.2500, sse=3633135.5, rms=1.636 (0.000%) rms = 1.62, time step reduction 3 of 3 to 0.062... 011: dt: 0.1250, sse=3596201.2, rms=1.624 (0.000%) positioning took 0.7 minutes inhibiting deformation at non-cortical midline structures... removing 2 vertex label from ripped group mean border=92.4, 132 (44) missing vertices, mean dist -0.3 [0.7 (%60.2)->0.3 (%39.8))] %50 local maxima, %44 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=ubunt, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.87 +- 0.26 (0.04-->4.70) (max @ vno 109052 --> 115085) face area 0.33 +- 0.16 (0.00-->3.24) mean absolute distance = 0.45 +- 0.58 4867 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3888199.0, rms=3.27 012: dt: 0.5000, sse=4207452.0, rms=2.168 (0.000%) 013: dt: 0.5000, sse=4639866.0, rms=1.822 (0.000%) 014: dt: 0.5000, sse=4633802.5, rms=1.744 (0.000%) rms = 1.73, time step reduction 1 of 3 to 0.250... 015: dt: 0.5000, sse=4966317.0, rms=1.733 (0.000%) 016: dt: 0.2500, sse=4017693.0, rms=1.437 (0.000%) rms = 1.40, time step reduction 2 of 3 to 0.125... 017: dt: 0.2500, sse=3891070.2, rms=1.399 (0.000%) rms = 1.39, time step reduction 3 of 3 to 0.062... 018: dt: 0.1250, sse=3844667.0, rms=1.387 (0.000%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... mean border=94.4, 135 (33) missing vertices, mean dist -0.3 [0.5 (%67.6)->0.3 (%32.4))] %71 local maxima, %24 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=ubunt, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.86 +- 0.26 (0.04-->4.64) (max @ vno 109052 --> 115085) face area 0.32 +- 0.16 (0.00-->2.82) mean absolute distance = 0.34 +- 0.45 4478 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=4010904.8, rms=3.04 019: dt: 0.5000, sse=4245451.5, rms=1.798 (0.000%) 020: dt: 0.5000, sse=4705032.0, rms=1.568 (0.000%) rms = 1.59, time step reduction 1 of 3 to 0.250... 021: dt: 0.2500, sse=4278422.5, rms=1.386 (0.000%) 022: dt: 0.2500, sse=4091986.5, rms=1.306 (0.000%) rms = 1.30, time step reduction 2 of 3 to 0.125... 023: dt: 0.2500, sse=4024313.2, rms=1.299 (0.000%) rms = 1.29, time step reduction 3 of 3 to 0.062... 024: dt: 0.1250, sse=3990316.5, rms=1.289 (0.000%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... removing 2 vertex label from ripped group mean border=95.3, 132 (17) missing vertices, mean dist -0.1 [0.4 (%59.1)->0.3 (%40.9))] %80 local maxima, %15 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=ubunt, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing white matter surface to /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white... writing smoothed curvature to rh.curv 000: dt: 0.0000, sse=4011497.2, rms=1.76 025: dt: 0.5000, sse=4894975.5, rms=1.148 (0.000%) rms = 1.37, time step reduction 1 of 3 to 0.250... 026: dt: 0.2500, sse=4558822.5, rms=1.052 (0.000%) rms = 1.06, time step reduction 2 of 3 to 0.125... rms = 1.04, time step reduction 3 of 3 to 0.062... 027: dt: 0.1250, sse=4520352.5, rms=1.044 (0.000%) positioning took 0.3 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group generating cortex label... 22 non-cortical segments detected only using segment with 2072 vertices erasing segment 1 (vno[0] = 80633) erasing segment 2 (vno[0] = 80664) erasing segment 3 (vno[0] = 81950) erasing segment 4 (vno[0] = 87493) erasing segment 5 (vno[0] = 87538) erasing segment 6 (vno[0] = 91660) erasing segment 7 (vno[0] = 96791) erasing segment 8 (vno[0] = 96853) erasing segment 9 (vno[0] = 97933) erasing segment 10 (vno[0] = 98930) erasing segment 11 (vno[0] = 100143) erasing segment 12 (vno[0] = 101247) erasing segment 13 (vno[0] = 101272) erasing segment 14 (vno[0] = 102201) erasing segment 15 (vno[0] = 102221) erasing segment 16 (vno[0] = 102387) erasing segment 17 (vno[0] = 103979) erasing segment 18 (vno[0] = 105669) erasing segment 19 (vno[0] = 105754) erasing segment 20 (vno[0] = 106591) erasing segment 21 (vno[0] = 106619) writing cortex label to /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/label/rh.cortex.label... writing curvature file /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.curv writing smoothed area to rh.area writing curvature file /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.area vertex spacing 0.86 +- 0.26 (0.06-->4.67) (max @ vno 109052 --> 115085) face area 0.31 +- 0.16 (0.00-->3.24) refinement took 3.0 minutes #-------------------------------------------- #@# Smooth2 rh Fri Dec 11 01:41:29 UTC 2015 mris_smooth -n 3 -nw -seed 1234 ../surf/rh.white ../surf/rh.smoothwm /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts smoothing for 3 iterations setting seed for random number generator to 1234 smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation2 rh Fri Dec 11 01:41:31 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mris_inflate ../surf/rh.smoothwm ../surf/rh.inflated avg radius = 46.1 mm, total surface area = 74910 mm^2 writing inflated surface to ../surf/rh.inflated writing sulcal depths to ../surf/rh.sulc step 000: RMS=0.116 (target=0.015) step 005: RMS=0.081 (target=0.015) step 010: RMS=0.062 (target=0.015) step 015: RMS=0.052 (target=0.015) step 020: RMS=0.043 (target=0.015) step 025: RMS=0.036 (target=0.015) step 030: RMS=0.031 (target=0.015) step 035: RMS=0.027 (target=0.015) step 040: RMS=0.024 (target=0.015) step 045: RMS=0.022 (target=0.015) step 050: RMS=0.019 (target=0.015) step 055: RMS=0.018 (target=0.015) step 060: RMS=0.017 (target=0.015) inflation complete. inflation took 0.3 minutes mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 ../surf/rh.inflated normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 149 vertices thresholded to be in k1 ~ [-0.29 0.59], k2 ~ [-0.11 0.07] total integrated curvature = 0.560*4pi (7.033) --> 0 handles ICI = 1.5, FI = 9.2, variation=157.407 105 vertices thresholded to be in [-0.02 0.01] writing Gaussian curvature to ../surf/rh.inflated.K...thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.001 118 vertices thresholded to be in [-0.15 0.24] done. writing mean curvature to ../surf/rh.inflated.H...curvature mean = -0.017, std = 0.024 done. #----------------------------------------- #@# Curvature Stats rh Fri Dec 11 01:42:46 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/rh.curv.stats -F smoothwm T40_OM_Post rh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/rh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ T40_OM_Post/rh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vertex faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 265 ] Gb_filter = 0 WARN: S lookup min: -0.334158 WARN: S explicit min: 0.000000 vertex = 790 #-------------------------------------------- #@# Sphere rh Fri Dec 11 01:42:48 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mris_sphere -seed 1234 ../surf/rh.inflated ../surf/rh.sphere setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... scaling brain by 0.328... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=ubunt, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 1234 -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %19.12 pass 1: epoch 2 of 3 starting distance error %19.06 unfolding complete - removing small folds... starting distance error %18.94 removing remaining folds... final distance error %18.96 MRISunfold() return, current seed 1234 writing spherical brain to ../surf/rh.sphere spherical transformation took 0.49 hours #-------------------------------------------- #@# Surf Reg rh Fri Dec 11 02:12:18 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mris_register -curv ../surf/rh.sphere /cdrom/Marco/freesurfer/average/rh.average.curvature.filled.buckner40.tif ../surf/rh.sphere.reg using smoothwm curvature for final alignment $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading surface from ../surf/rh.sphere... reading template parameterization from /cdrom/Marco/freesurfer/average/rh.average.curvature.filled.buckner40.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=ubunt, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 1 randomSeed 0 tol=5.0e-01, sigma=0.0, host=ubunt, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading rh.sulc curvature mean = 0.000, std = 0.580 curvature mean = 0.018, std = 0.926 curvature mean = 0.027, std = 0.871 Starting MRISrigidBodyAlignGlobal() d=64.00 min @ (16.00, 0.00, 0.00) sse = 301397.6, tmin=0.6283 d=32.00 min @ (-8.00, 0.00, 0.00) sse = 253575.5, tmin=1.2585 d=16.00 min @ (4.00, 0.00, 4.00) sse = 223522.6, tmin=1.8905 d=8.00 min @ (-2.00, 0.00, 0.00) sse = 216279.0, tmin=2.5411 d=4.00 min @ (0.00, -1.00, 0.00) sse = 216149.5, tmin=3.2002 d=2.00 min @ (0.00, 0.50, 0.00) sse = 215330.4, tmin=3.8627 d=0.50 min @ (-0.12, 0.00, 0.00) sse = 215317.6, tmin=5.1670 tol=1.0e+00, sigma=0.5, host=ubunt, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization MRISrigidBodyAlignGlobal() done 5.17 min curvature mean = -0.010, std = 0.953 curvature mean = 0.010, std = 0.949 curvature mean = -0.013, std = 0.965 curvature mean = 0.004, std = 0.977 curvature mean = -0.015, std = 0.966 curvature mean = 0.001, std = 0.990 2 Reading smoothwm curvature mean = -0.035, std = 0.342 curvature mean = 0.004, std = 0.070 curvature mean = 0.064, std = 0.297 curvature mean = 0.004, std = 0.084 curvature mean = 0.031, std = 0.455 curvature mean = 0.004, std = 0.091 curvature mean = 0.018, std = 0.578 curvature mean = 0.004, std = 0.093 curvature mean = 0.008, std = 0.677 MRISregister() return, current seed 0 writing registered surface to ../surf/rh.sphere.reg... expanding nbhd size to 1 #-------------------------------------------- #@# Jacobian white rh Fri Dec 11 02:27:33 UTC 2015 mris_jacobian ../surf/rh.white ../surf/rh.sphere.reg ../surf/rh.jacobian_white reading surface from ../surf/rh.white... writing curvature file ../surf/rh.jacobian_white #-------------------------------------------- #@# AvgCurv rh Fri Dec 11 02:27:34 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mrisp_paint -a 5 /cdrom/Marco/freesurfer/average/rh.average.curvature.filled.buckner40.tif#6 ../surf/rh.sphere.reg ../surf/rh.avg_curv averaging curvature patterns 5 times... reading surface from ../surf/rh.sphere.reg... reading template parameterization from /cdrom/Marco/freesurfer/average/rh.average.curvature.filled.buckner40.tif... writing curvature file to ../surf/rh.avg_curv... #----------------------------------------- #@# Cortical Parc rh Fri Dec 11 02:27:35 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 T40_OM_Post rh ../surf/rh.sphere.reg /cdrom/Marco/freesurfer/average/rh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ../label/rh.aparc.annot setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading atlas from /cdrom/Marco/freesurfer/average/rh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs... reading color table from GCSA file.... average std = 0.7 using min determinant for regularization = 0.006 0 singular and 311 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 1135 labels changed using aseg relabeling using gibbs priors... 000: 2906 changed, 131997 examined... 001: 681 changed, 12277 examined... 002: 177 changed, 3775 examined... 003: 55 changed, 1001 examined... 004: 26 changed, 303 examined... 005: 5 changed, 165 examined... 006: 4 changed, 33 examined... 007: 6 changed, 26 examined... 008: 8 changed, 28 examined... 009: 2 changed, 34 examined... 010: 0 changed, 11 examined... 164 labels changed using aseg 000: 99 total segments, 60 labels (384 vertices) changed 001: 39 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 50 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1323 vertices marked for relabeling... 1323 labels changed in reclassification. writing output to ../label/rh.aparc.annot... classification took 0 minutes and 27 seconds. #-------------------------------------------- #@# Make Pial Surf rh Fri Dec 11 02:28:02 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mris_make_surfaces -white NOWRITE -mgz -T1 brain.finalsurfs T40_OM_Post rh -white NOWRITE indicates that white, curv, area, and cortex.label files will not be written... INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/filled.mgz... reading volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/brain.finalsurfs.mgz... reading volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... 13350 bright wm thresholded. 2609 bright non-wm voxels segmented. reading original surface position from /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.orig... computing class statistics... border white: 274904 voxels (1.64%) border gray 286178 voxels (1.71%) WM (98.0): 98.5 +- 6.5 [70.0 --> 110.0] GM (89.0) : 86.3 +- 11.6 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 71.4 (was 70) setting MAX_BORDER_WHITE to 109.5 (was 105) setting MIN_BORDER_WHITE to 83.0 (was 85) setting MAX_CSF to 59.9 (was 40) setting MAX_GRAY to 96.5 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 77.2 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 48.3 (was 40) smoothing contralateral hemisphere... using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=103, GM=83 mean inside = 97.4, mean outside = 84.7 smoothing surface for 5 iterations... reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) repositioning cortical surface to gray/white boundary reading volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/aseg.mgz... smoothing T1 volume with sigma = 2.000 vertex spacing 0.81 +- 0.23 (0.01-->5.16) (max @ vno 109052 --> 115085) face area 0.27 +- 0.13 (0.00-->4.32) mean absolute distance = 0.92 +- 1.22 4830 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... deleting segment 1 with 440 points - only 1.36% unknown removing 3 vertex label from ripped group removing 2 vertex label from ripped group deleting segment 7 with 5 points - only 0.00% unknown mean border=90.6, 107 (107) missing vertices, mean dist 0.1 [1.1 (%37.8)->0.8 (%62.2))] %35 local maxima, %60 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=ubunt, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.89 +- 0.26 (0.06-->4.82) (max @ vno 109052 --> 115085) face area 0.27 +- 0.14 (0.00-->3.13) mean absolute distance = 0.56 +- 0.91 5437 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3778193.0, rms=7.40 001: dt: 0.5000, sse=4754229.5, rms=5.096 (0.000%) 002: dt: 0.5000, sse=4870208.5, rms=3.641 (0.000%) 003: dt: 0.5000, sse=5054484.0, rms=2.831 (0.000%) 004: dt: 0.5000, sse=5176634.0, rms=2.427 (0.000%) 005: dt: 0.5000, sse=5222889.0, rms=2.232 (0.000%) 006: dt: 0.5000, sse=5255416.0, rms=2.139 (0.000%) 007: dt: 0.5000, sse=5276364.0, rms=2.089 (0.000%) rms = 2.06, time step reduction 1 of 3 to 0.250... 008: dt: 0.5000, sse=5329964.5, rms=2.055 (0.000%) 009: dt: 0.2500, sse=3866157.0, rms=1.684 (0.000%) rms = 1.64, time step reduction 2 of 3 to 0.125... 010: dt: 0.2500, sse=3729191.8, rms=1.636 (0.000%) rms = 1.62, time step reduction 3 of 3 to 0.062... 011: dt: 0.1250, sse=3676573.5, rms=1.621 (0.000%) positioning took 0.7 minutes inhibiting deformation at non-cortical midline structures... removing 2 vertex label from ripped group deleting segment 1 with 13 points - only 0.00% unknown deleting segment 2 with 310 points - only 1.94% unknown deleting segment 6 with 30 points - only 16.67% unknown deleting segment 8 with 37 points - only 0.00% unknown mean border=92.3, 136 (42) missing vertices, mean dist -0.3 [0.7 (%60.2)->0.3 (%39.8))] %51 local maxima, %44 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=ubunt, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.87 +- 0.26 (0.07-->4.71) (max @ vno 109052 --> 115085) face area 0.33 +- 0.16 (0.00-->3.19) mean absolute distance = 0.45 +- 0.59 4939 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3975185.5, rms=3.27 012: dt: 0.5000, sse=4262868.5, rms=2.175 (0.000%) 013: dt: 0.5000, sse=4707077.5, rms=1.835 (0.000%) 014: dt: 0.5000, sse=4690061.5, rms=1.759 (0.000%) rms = 1.74, time step reduction 1 of 3 to 0.250... 015: dt: 0.5000, sse=5026183.5, rms=1.744 (0.000%) 016: dt: 0.2500, sse=4075921.8, rms=1.449 (0.000%) rms = 1.41, time step reduction 2 of 3 to 0.125... 017: dt: 0.2500, sse=3949648.5, rms=1.413 (0.000%) rms = 1.40, time step reduction 3 of 3 to 0.062... 018: dt: 0.1250, sse=3901203.2, rms=1.402 (0.000%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 13 points - only 0.00% unknown deleting segment 1 with 313 points - only 1.92% unknown deleting segment 2 with 30 points - only 16.67% unknown removing 4 vertex label from ripped group deleting segment 3 with 4 points - only 0.00% unknown deleting segment 4 with 37 points - only 0.00% unknown deleting segment 5 with 10 points - only 0.00% unknown mean border=94.4, 141 (25) missing vertices, mean dist -0.3 [0.5 (%67.5)->0.3 (%32.5))] %71 local maxima, %24 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=ubunt, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.86 +- 0.26 (0.06-->4.67) (max @ vno 109052 --> 115085) face area 0.32 +- 0.16 (0.00-->2.79) mean absolute distance = 0.34 +- 0.46 3738 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=4068020.2, rms=3.05 019: dt: 0.5000, sse=4299647.0, rms=1.811 (0.000%) 020: dt: 0.5000, sse=4773130.5, rms=1.580 (0.000%) rms = 1.60, time step reduction 1 of 3 to 0.250... 021: dt: 0.2500, sse=4336947.0, rms=1.399 (0.000%) 022: dt: 0.2500, sse=4130642.0, rms=1.319 (0.000%) rms = 1.31, time step reduction 2 of 3 to 0.125... 023: dt: 0.2500, sse=4080194.5, rms=1.310 (0.000%) rms = 1.30, time step reduction 3 of 3 to 0.062... 024: dt: 0.1250, sse=4044155.8, rms=1.299 (0.000%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 18 points - only 0.00% unknown deleting segment 1 with 319 points - only 1.88% unknown deleting segment 2 with 6 points - only 0.00% unknown deleting segment 3 with 7 points - only 0.00% unknown deleting segment 4 with 10 points - only 0.00% unknown mean border=95.3, 174 (20) missing vertices, mean dist -0.1 [0.4 (%59.1)->0.3 (%40.9))] %80 local maxima, %15 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=ubunt, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 repositioning cortical surface to gray/csf boundary. smoothing T1 volume with sigma = 2.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=4067492.2, rms=1.77 025: dt: 0.5000, sse=4962187.0, rms=1.161 (0.000%) rms = 1.37, time step reduction 1 of 3 to 0.250... 026: dt: 0.2500, sse=4624847.0, rms=1.065 (0.000%) rms = 1.07, time step reduction 2 of 3 to 0.125... rms = 1.06, time step reduction 3 of 3 to 0.062... 027: dt: 0.1250, sse=4586839.0, rms=1.056 (0.000%) positioning took 0.3 minutes inhibiting deformation at non-cortical midline structures... deleting segment 1 with 8 points - only 0.00% unknown deleting segment 3 with 32 points - only 18.75% unknown smoothing surface for 5 iterations... mean border=71.0, 104 (104) missing vertices, mean dist 2.0 [0.4 (%0.0)->2.4 (%100.0))] %40 local maxima, %40 large gradients and %16 min vals, 648 gradients ignored tol=1.0e-04, sigma=2.0, host=ubunt, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 1.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=18132982.0, rms=25.07 001: dt: 0.5000, sse=15271658.0, rms=22.673 (0.000%) 002: dt: 0.5000, sse=12886006.0, rms=20.485 (0.000%) 003: dt: 0.5000, sse=11046871.0, rms=18.544 (0.000%) 004: dt: 0.5000, sse=9792186.0, rms=16.779 (0.000%) 005: dt: 0.5000, sse=8910119.0, rms=15.148 (0.000%) 006: dt: 0.5000, sse=8263351.5, rms=13.591 (0.000%) 007: dt: 0.5000, sse=7697665.5, rms=12.059 (0.000%) 008: dt: 0.5000, sse=7253395.5, rms=10.551 (0.000%) 009: dt: 0.5000, sse=6923778.0, rms=9.136 (0.000%) 010: dt: 0.5000, sse=6766199.5, rms=7.881 (0.000%) 011: dt: 0.5000, sse=6690134.0, rms=6.858 (0.000%) 012: dt: 0.5000, sse=6647903.0, rms=6.050 (0.000%) 013: dt: 0.5000, sse=6736450.5, rms=5.504 (0.000%) 014: dt: 0.5000, sse=6761929.0, rms=5.168 (0.000%) 015: dt: 0.5000, sse=6819135.0, rms=4.966 (0.000%) 016: dt: 0.5000, sse=6850074.5, rms=4.839 (0.000%) 017: dt: 0.5000, sse=6846686.5, rms=4.757 (0.000%) 018: dt: 0.5000, sse=6867729.0, rms=4.681 (0.000%) rms = 4.64, time step reduction 1 of 3 to 0.250... 019: dt: 0.5000, sse=6882297.0, rms=4.638 (0.000%) 020: dt: 0.2500, sse=4411589.5, rms=3.544 (0.000%) 021: dt: 0.2500, sse=4143447.0, rms=3.227 (0.000%) 022: dt: 0.2500, sse=3965131.2, rms=3.148 (0.000%) rms = 3.10, time step reduction 2 of 3 to 0.125... 023: dt: 0.2500, sse=3929987.5, rms=3.104 (0.000%) 024: dt: 0.1250, sse=3668278.8, rms=2.886 (0.000%) rms = 2.85, time step reduction 3 of 3 to 0.062... 025: dt: 0.1250, sse=3622440.8, rms=2.847 (0.000%) positioning took 1.5 minutes mean border=67.8, 712 (17) missing vertices, mean dist 0.2 [0.2 (%33.7)->0.4 (%66.3))] %63 local maxima, %22 large gradients and %11 min vals, 321 gradients ignored tol=1.0e-04, sigma=1.0, host=ubunt, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 averaging target values for 5 iterations... 000: dt: 0.0000, sse=4404551.0, rms=5.59 026: dt: 0.5000, sse=4616580.5, rms=4.611 (0.000%) rms = 4.67, time step reduction 1 of 3 to 0.250... 027: dt: 0.2500, sse=4167478.5, rms=3.676 (0.000%) 028: dt: 0.2500, sse=4192647.5, rms=3.313 (0.000%) 029: dt: 0.2500, sse=4136608.8, rms=3.148 (0.000%) 030: dt: 0.2500, sse=4169302.8, rms=3.093 (0.000%) 031: dt: 0.2500, sse=4157299.2, rms=3.031 (0.000%) rms = 3.01, time step reduction 2 of 3 to 0.125... 032: dt: 0.2500, sse=4189245.5, rms=3.008 (0.000%) 033: dt: 0.1250, sse=3956838.2, rms=2.742 (0.000%) 034: dt: 0.1250, sse=3926979.0, rms=2.691 (0.000%) rms = 2.69, time step reduction 3 of 3 to 0.062... 035: dt: 0.1250, sse=3918293.0, rms=2.687 (0.000%) positioning took 0.6 minutes mean border=66.2, 1029 (12) missing vertices, mean dist 0.1 [0.2 (%36.5)->0.3 (%63.5))] %71 local maxima, %13 large gradients and %10 min vals, 338 gradients ignored tol=1.0e-04, sigma=0.5, host=ubunt, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 averaging target values for 5 iterations... 000: dt: 0.0000, sse=4053237.5, rms=3.49 rms = 4.24, time step reduction 1 of 3 to 0.250... 036: dt: 0.2500, sse=3904974.8, rms=2.910 (0.000%) 037: dt: 0.2500, sse=3956402.0, rms=2.732 (0.000%) rms = 2.70, time step reduction 2 of 3 to 0.125... 038: dt: 0.2500, sse=4072361.8, rms=2.700 (0.000%) 039: dt: 0.1250, sse=3945230.2, rms=2.532 (0.000%) rms = 2.49, time step reduction 3 of 3 to 0.062... 040: dt: 0.1250, sse=3934953.8, rms=2.494 (0.000%) positioning took 0.3 minutes mean border=65.6, 1605 (11) missing vertices, mean dist 0.0 [0.2 (%45.8)->0.2 (%54.2))] %73 local maxima, %11 large gradients and %10 min vals, 300 gradients ignored tol=1.0e-04, sigma=0.2, host=ubunt, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing pial surface to /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.pial... writing smoothed curvature to rh.curv.pial 000: dt: 0.0000, sse=3950637.2, rms=2.64 rms = 3.44, time step reduction 1 of 3 to 0.250... 041: dt: 0.2500, sse=3902615.0, rms=2.446 (0.000%) rms = 2.41, time step reduction 2 of 3 to 0.125... 042: dt: 0.2500, sse=4051024.2, rms=2.414 (0.000%) 043: dt: 0.1250, sse=3974587.8, rms=2.340 (0.000%) rms = 2.31, time step reduction 3 of 3 to 0.062... 044: dt: 0.1250, sse=3985353.8, rms=2.306 (0.000%) positioning took 0.3 minutes writing curvature file /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.curv.pial writing smoothed area to rh.area.pial writing curvature file /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.area.pial vertex spacing 0.96 +- 0.40 (0.08-->6.79) (max @ vno 105704 --> 105697) face area 0.37 +- 0.28 (0.00-->8.37) measuring cortical thickness... writing cortical thickness estimate to 'thickness' file. 0 of 131997 vertices processed 25000 of 131997 vertices processed 50000 of 131997 vertices processed 75000 of 131997 vertices processed 100000 of 131997 vertices processed 125000 of 131997 vertices processed 0 of 131997 vertices processed 25000 of 131997 vertices processed 50000 of 131997 vertices processed 75000 of 131997 vertices processed 100000 of 131997 vertices processed 125000 of 131997 vertices processed thickness calculation complete, 251:952 truncations. 37603 vertices at 0 distance 94392 vertices at 1 distance 73713 vertices at 2 distance 31533 vertices at 3 distance 10362 vertices at 4 distance 2978 vertices at 5 distance 966 vertices at 6 distance 268 vertices at 7 distance 123 vertices at 8 distance 53 vertices at 9 distance 25 vertices at 10 distance 15 vertices at 11 distance 16 vertices at 12 distance 15 vertices at 13 distance 8 vertices at 14 distance 8 vertices at 15 distance 8 vertices at 16 distance 7 vertices at 17 distance 2 vertices at 18 distance 3 vertices at 19 distance 6 vertices at 20 distance writing curvature file /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.thickness positioning took 6.4 minutes #-------------------------------------------- #@# Surf Volume rh Fri Dec 11 02:34:27 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf mris_calc -o rh.area.mid rh.area add rh.area.pial Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o rh.area.mid rh.area.mid div 2 Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o rh.volume rh.area.mid mul rh.thickness Saving result to 'rh.volume' (type = MRI_CURV_FILE) [ ok ] #----------------------------------------- #@# WM/GM Contrast rh Fri Dec 11 02:34:27 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts pctsurfcon --s T40_OM_Post --rh-only Log file is /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts/pctsurfcon.log Fri Dec 11 02:34:27 UTC 2015 setenv SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects cd /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts /cdrom/Marco/freesurfer/bin/pctsurfcon $Id: pctsurfcon,v 1.11.2.1 2011/11/10 20:37:10 nicks Exp $ Linux ubuntu 3.19.0-25-generic #26~14.04.1-Ubuntu SMP Fri Jul 24 21:16:20 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /cdrom/Marco/freesurfer mri_vol2surf --mov /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --projdist -1 --o /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.25175/rh.wm.mgh --regheader T40_OM_Post --cortex srcvol = /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/orig.mgz as target reference. Loading label /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/label/rh.cortex.label Reading surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 83458 Masking with /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/label/rh.cortex.label Writing to /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.25175/rh.wm.mgh Dim: 131997 1 1 mri_vol2surf --mov /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --o /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.25175/rh.gm.mgh --projfrac 0.3 --regheader T40_OM_Post --cortex srcvol = /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/orig.mgz as target reference. Loading label /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/label/rh.cortex.label Reading surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Done reading source surface Reading thickness /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.thickness Done Mapping Source Volume onto Source Subject Surface 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 98438 Masking with /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/label/rh.cortex.label Writing to /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.25175/rh.gm.mgh Dim: 131997 1 1 mri_concat /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.25175/rh.wm.mgh /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.25175/rh.gm.mgh --paired-diff-norm --mul 100 --o /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.w-g.pct.mgh mri_segstats --in /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.w-g.pct.mgh --annot T40_OM_Post rh aparc --sum /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/stats/rh.w-g.pct.stats --snr $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --in /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.w-g.pct.mgh --annot T40_OM_Post rh aparc --sum /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/stats/rh.w-g.pct.stats --snr sysname Linux hostname ubuntu machine x86_64 user marco UseRobust 0 Constructing seg from annotation Reading annotation reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Seg base 2000 Loading /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.w-g.pct.mgh Vertex Area is 0.62273 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation 0 2000 unknown 0 0.000 1 2001 bankssts 1231 813.417 2 2002 caudalanteriorcingulate 1128 750.296 3 2003 caudalmiddlefrontal 3501 2110.967 4 2004 corpuscallosum 0 0.000 5 2005 cuneus 2304 1249.946 6 2006 entorhinal 546 357.245 7 2007 fusiform 3896 2578.656 8 2008 inferiorparietal 7321 4717.439 9 2009 inferiortemporal 4798 3102.986 10 2010 isthmuscingulate 1388 834.816 11 2011 lateraloccipital 7720 4513.340 12 2012 lateralorbitofrontal 3529 2221.240 13 2013 lingual 4096 2493.692 14 2014 medialorbitofrontal 2629 1683.645 15 2015 middletemporal 4988 3201.966 16 2016 parahippocampal 787 519.466 17 2017 paracentral 2550 1549.886 18 2018 parsopercularis 1953 1259.534 19 2019 parsorbitalis 1021 636.092 20 2020 parstriangularis 1925 1234.184 21 2021 pericalcarine 2328 1517.635 22 2022 postcentral 5998 3610.082 23 2023 posteriorcingulate 1623 1050.907 24 2024 precentral 8270 5149.078 25 2025 precuneus 5689 3509.858 26 2026 rostralanteriorcingulate 969 603.584 27 2027 rostralmiddlefrontal 8584 5415.741 28 2028 superiorfrontal 9674 5904.831 29 2029 superiorparietal 8354 5000.686 30 2030 superiortemporal 5286 3338.233 31 2031 supramarginal 4973 3166.536 32 2032 frontalpole 332 208.671 33 2033 temporalpole 593 440.462 34 2034 transversetemporal 605 293.046 35 2035 insula 3014 1918.592 Reporting on 34 segmentations mri_segstats done Cleaning up #----------------------------------------- #@# Parcellation Stats rh Fri Dec 11 02:34:33 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mris_anatomical_stats -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab T40_OM_Post rh white computing statistics for each annotation in ../label/rh.aparc.annot. reading volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white... reading input pial surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.pial... reading input white surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1231 813 1999 2.396 0.396 0.128 0.044 13 2.4 bankssts 1128 750 2231 2.600 0.851 0.164 0.072 29 3.3 caudalanteriorcingulate 3501 2111 5280 2.380 0.501 0.141 0.071 56 11.5 caudalmiddlefrontal 2304 1250 2611 1.857 0.537 0.152 0.074 46 7.4 cuneus 546 357 1459 3.023 0.669 0.195 0.199 32 6.2 entorhinal 3896 2579 7361 2.395 0.680 0.174 0.096 168 14.1 fusiform 7321 4717 12275 2.371 0.559 0.147 0.058 119 17.9 inferiorparietal 4798 3103 9908 2.698 0.696 0.155 0.073 123 15.3 inferiortemporal 1388 835 2053 2.226 0.691 0.165 0.177 163 14.0 isthmuscingulate 7720 4513 10514 2.107 0.589 0.152 0.080 166 26.2 lateraloccipital 3529 2221 5784 2.386 0.765 0.203 0.241 182 42.6 lateralorbitofrontal 4096 2494 5137 1.879 0.539 0.184 0.175 205 41.0 lingual 2629 1684 4884 2.402 0.854 0.166 0.093 84 9.3 medialorbitofrontal 4988 3202 10403 2.687 0.589 0.144 0.081 468 13.1 middletemporal 787 519 1611 2.657 0.940 0.151 0.076 14 2.6 parahippocampal 2550 1550 3300 2.132 0.638 0.140 0.062 38 7.1 paracentral 1953 1260 3062 2.303 0.449 0.144 0.069 31 5.4 parsopercularis 1021 636 1922 2.380 0.656 0.195 0.121 38 5.4 parsorbitalis 1925 1234 3233 2.233 0.634 0.158 0.077 34 6.4 parstriangularis 2328 1518 2242 1.528 0.423 0.159 0.079 43 6.4 pericalcarine 5998 3610 7281 1.831 0.591 0.140 0.111 184 22.9 postcentral 1623 1051 2836 2.460 0.641 0.156 0.070 32 4.6 posteriorcingulate 8270 5149 11963 2.229 0.676 0.160 0.125 427 51.1 precentral 5689 3510 8272 2.113 0.575 0.141 0.075 122 19.6 precuneus 969 604 2206 3.120 0.962 0.165 0.114 39 4.1 rostralanteriorcingulate 8584 5416 13964 2.239 0.533 0.168 0.136 1201 49.1 rostralmiddlefrontal 9674 5905 16333 2.483 0.543 0.162 0.511 1786 60.6 superiorfrontal 8354 5001 11678 2.115 0.562 0.141 0.137 349 38.5 superiorparietal 5286 3338 9595 2.510 0.579 0.142 0.234 609 18.6 superiortemporal 4973 3167 7782 2.332 0.569 0.148 0.066 88 14.3 supramarginal 332 209 802 2.698 0.491 0.229 1.302 307 1.3 frontalpole 593 440 2322 3.498 0.623 0.213 0.124 19 3.1 temporalpole 605 293 696 2.184 0.316 0.142 0.142 28 4.4 transversetemporal 3014 1919 6010 2.929 0.955 0.170 1.877 431 16.2 insula #----------------------------------------- #@# Cortical Parc 2 rh Fri Dec 11 02:34:41 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 T40_OM_Post rh ../surf/rh.sphere.reg /cdrom/Marco/freesurfer/average/rh.destrieux.simple.2009-07-29.gcs ../label/rh.aparc.a2009s.annot setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading atlas from /cdrom/Marco/freesurfer/average/rh.destrieux.simple.2009-07-29.gcs... reading color table from GCSA file.... average std = 1.9 0.2 using min determinant for regularization = 0.000 0 singular and 851 ill-conditioned covariance matrices regularized input 1: CURVATURE FILE, flags 0, avgs 0, name sulc input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 11 labels changed using aseg relabeling using gibbs priors... 000: 9065 changed, 131997 examined... 001: 2152 changed, 34890 examined... 002: 609 changed, 11151 examined... 003: 255 changed, 3361 examined... 004: 130 changed, 1425 examined... 005: 79 changed, 738 examined... 006: 29 changed, 425 examined... 007: 19 changed, 160 examined... 008: 8 changed, 95 examined... 009: 3 changed, 49 examined... 010: 1 changed, 14 examined... 011: 0 changed, 6 examined... 11 labels changed using aseg 000: 278 total segments, 197 labels (2858 vertices) changed 001: 100 total segments, 19 labels (52 vertices) changed 002: 81 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 135 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... 850 vertices marked for relabeling... 850 labels changed in reclassification. writing output to ../label/rh.aparc.a2009s.annot... classification took 0 minutes and 32 seconds. #----------------------------------------- #@# Parcellation Stats 2 rh Fri Dec 11 02:35:13 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mris_anatomical_stats -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.a2009s.stats -b -a ../label/rh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab T40_OM_Post rh white computing statistics for each annotation in ../label/rh.aparc.a2009s.annot. reading volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white... reading input pial surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.pial... reading input white surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 76 entries read (originally /autofs/space/birn_044/users/christophe_atlas_rebuild//scripts_2008/Simple_surface_labels2009.txt) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 933 624 1673 2.225 0.546 0.155 0.057 21 2.2 G_and_S_frontomargin 1234 762 2443 2.650 0.673 0.171 0.111 51 6.2 G_and_S_occipital_inf 1651 954 2215 1.996 0.709 0.153 0.127 51 6.3 G_and_S_paracentral 1485 935 2428 2.322 0.542 0.158 0.162 72 4.7 G_and_S_subcentral 1152 707 1934 2.214 0.622 0.195 0.222 157 13.9 G_and_S_transv_frontopol 2709 1769 5201 2.664 0.816 0.158 0.087 70 9.2 G_and_S_cingul-Ant 1370 921 2676 2.656 0.612 0.143 0.060 23 3.2 G_and_S_cingul-Mid-Ant 1272 841 2229 2.440 0.514 0.131 0.047 16 2.5 G_and_S_cingul-Mid-Post 453 279 968 2.566 0.515 0.193 0.241 15 5.7 G_cingul-Post-dorsal 320 183 558 2.357 0.532 0.182 0.257 78 5.0 G_cingul-Post-ventral 2187 1214 2373 1.717 0.525 0.161 0.082 53 7.6 G_cuneus 1271 798 2328 2.366 0.507 0.176 0.102 30 5.3 G_front_inf-Opercular 239 150 477 2.381 0.490 0.177 0.092 5 0.9 G_front_inf-Orbital 1188 700 2351 2.491 0.543 0.167 0.086 30 4.5 G_front_inf-Triangul 4015 2342 7673 2.488 0.506 0.171 0.153 159 26.0 G_front_middle 6725 3847 12248 2.595 0.559 0.179 0.762 1998 48.9 G_front_sup 441 265 1114 3.274 0.947 0.193 11.986 346 2.4 G_Ins_lg_and_S_cent_ins 456 282 1525 4.032 0.723 0.185 0.125 12 2.3 G_insular_short 2341 1374 4386 2.508 0.552 0.158 0.077 48 7.1 G_occipital_middle 1896 973 2613 2.122 0.503 0.129 0.091 32 8.3 G_occipital_sup 1304 808 2542 2.511 0.564 0.181 0.107 40 5.1 G_oc-temp_lat-fusifor 2753 1587 3568 1.924 0.579 0.187 0.221 179 35.8 G_oc-temp_med-Lingual 1475 919 3335 2.821 0.802 0.197 0.218 109 14.1 G_oc-temp_med-Parahip 2587 1610 5148 2.521 0.797 0.224 0.198 133 22.7 G_orbital 2631 1616 4927 2.486 0.538 0.158 0.069 54 7.6 G_pariet_inf-Angular 2394 1460 4573 2.544 0.635 0.160 0.088 63 9.1 G_pariet_inf-Supramar 2896 1696 4400 2.203 0.616 0.152 0.263 193 20.5 G_parietal_sup 2339 1222 3028 1.991 0.534 0.148 0.109 79 13.8 G_postcentral 3548 1900 5485 2.396 0.717 0.170 0.207 357 37.9 G_precentral 2692 1507 4765 2.379 0.593 0.152 0.099 85 12.3 G_precuneus 733 466 1677 2.633 0.671 0.191 0.145 38 5.2 G_rectus 140 99 328 3.031 1.277 0.126 0.158 14 0.2 G_subcallosal 446 204 538 2.261 0.308 0.159 0.180 27 4.2 G_temp_sup-G_T_transv 2046 1150 4259 2.688 0.555 0.172 0.324 195 13.0 G_temp_sup-Lateral 612 431 1456 3.034 0.769 0.139 0.054 8 1.2 G_temp_sup-Plan_polar 630 425 1079 2.228 0.419 0.126 0.047 5 1.2 G_temp_sup-Plan_tempo 2553 1622 6551 2.950 0.685 0.172 0.089 85 10.1 G_temporal_inf 2952 1813 6960 2.818 0.589 0.159 0.110 451 9.8 G_temporal_middle 421 286 499 1.816 0.625 0.160 0.091 6 1.8 Lat_Fis-ant-Horizont 252 167 384 2.180 0.450 0.134 0.055 3 0.6 Lat_Fis-ant-Vertical 1428 941 1770 2.054 0.525 0.134 0.049 16 3.0 Lat_Fis-post 3530 1991 4325 1.937 0.582 0.161 0.097 84 13.5 Pole_occipital 1670 1189 5360 3.022 0.733 0.221 0.134 140 8.7 Pole_temporal 2408 1643 2523 1.637 0.444 0.166 0.072 39 7.8 S_calcarine 2956 2142 3041 1.594 0.504 0.151 0.057 34 7.5 S_central 1335 900 1834 2.174 0.611 0.128 0.042 12 2.3 S_cingul-Marginalis 539 333 779 2.659 0.664 0.175 0.118 15 2.8 S_circular_insula_ant 1261 829 1926 2.515 0.757 0.115 0.053 14 3.2 S_circular_insula_inf 1295 861 1925 2.517 0.503 0.123 0.048 12 2.6 S_circular_insula_sup 1110 752 1723 2.376 0.527 0.125 0.050 16 2.3 S_collat_transv_ant 663 417 601 1.620 0.385 0.165 0.076 10 2.3 S_collat_transv_post 2045 1319 2535 2.027 0.449 0.140 0.117 871 7.2 S_front_inf 2544 1625 3360 2.069 0.443 0.153 0.070 44 7.8 S_front_middle 2395 1559 3297 2.295 0.455 0.137 0.085 76 10.7 S_front_sup 628 421 742 2.115 0.443 0.128 0.039 5 1.1 S_interm_prim-Jensen 3319 2091 4311 2.171 0.481 0.134 0.052 78 7.6 S_intrapariet_and_P_trans 1628 1025 1726 1.875 0.423 0.138 0.057 19 3.8 S_oc_middle_and_Lunatus 1688 1122 1962 1.841 0.474 0.138 0.048 18 3.4 S_oc_sup_and_transversal 633 400 860 2.205 0.494 0.145 0.057 8 1.5 S_occipital_ant 686 452 856 2.078 0.495 0.130 0.044 7 1.1 S_oc-temp_lat 1186 857 1749 2.036 0.561 0.143 0.046 13 2.4 S_oc-temp_med_and_Lingual 245 179 373 1.980 0.377 0.138 0.054 3 0.7 S_orbital_lateral 553 388 732 1.845 0.616 0.143 0.060 10 1.3 S_orbital_med-olfact 1353 868 2150 2.399 0.688 0.194 0.327 79 23.6 S_orbital-H_Shaped 1824 1184 2243 1.943 0.467 0.114 0.036 14 2.8 S_parieto_occipital 1539 948 1608 2.146 0.902 0.155 0.076 66 5.2 S_pericallosal 2238 1473 2439 1.830 0.464 0.135 0.059 64 6.0 S_postcentral 1821 1246 2581 2.295 0.476 0.131 0.050 19 4.0 S_precentral-inf-part 1238 807 1471 2.050 0.554 0.136 0.055 13 2.9 S_precentral-sup-part 504 311 676 1.950 0.776 0.147 0.059 9 1.3 S_suborbital 1353 881 1743 1.981 0.497 0.139 0.064 21 3.9 S_subparietal 1558 1059 2339 2.527 0.578 0.134 0.044 15 3.0 S_temporal_inf 5444 3673 8206 2.345 0.458 0.124 0.123 434 9.4 S_temporal_sup 244 160 331 2.164 0.343 0.120 0.036 2 0.4 S_temporal_transverse #----------------------------------------- #@# Cortical Parc 3 rh Fri Dec 11 02:35:22 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 T40_OM_Post rh ../surf/rh.sphere.reg /cdrom/Marco/freesurfer/average/rh.DKTatlas40.gcs ../label/rh.aparc.DKTatlas40.annot setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading atlas from /cdrom/Marco/freesurfer/average/rh.DKTatlas40.gcs... reading color table from GCSA file.... average std = 0.9 using min determinant for regularization = 0.008 0 singular and 237 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 981 labels changed using aseg relabeling using gibbs priors... 000: 2597 changed, 131997 examined... 001: 625 changed, 11146 examined... 002: 150 changed, 3286 examined... 003: 68 changed, 905 examined... 004: 30 changed, 397 examined... 005: 17 changed, 170 examined... 006: 5 changed, 95 examined... 007: 4 changed, 32 examined... 008: 10 changed, 24 examined... 009: 4 changed, 32 examined... 010: 2 changed, 16 examined... 011: 3 changed, 14 examined... 012: 6 changed, 20 examined... 013: 3 changed, 21 examined... 014: 3 changed, 18 examined... 015: 3 changed, 17 examined... 016: 2 changed, 15 examined... 017: 1 changed, 12 examined... 018: 1 changed, 7 examined... 019: 1 changed, 7 examined... 020: 1 changed, 7 examined... 021: 1 changed, 7 examined... 022: 1 changed, 7 examined... 023: 1 changed, 7 examined... 024: 1 changed, 9 examined... 025: 0 changed, 7 examined... 247 labels changed using aseg 000: 59 total segments, 26 labels (99 vertices) changed 001: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 65 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 492 vertices marked for relabeling... 492 labels changed in reclassification. writing output to ../label/rh.aparc.DKTatlas40.annot... classification took 0 minutes and 26 seconds. #----------------------------------------- #@# Parcellation Stats 3 rh Fri Dec 11 02:35:48 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/scripts mris_anatomical_stats -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.DKTatlas40.stats -b -a ../label/rh.aparc.DKTatlas40.annot -c ../label/aparc.annot.DKTatlas40.ctab T40_OM_Post rh white computing statistics for each annotation in ../label/rh.aparc.DKTatlas40.annot. reading volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white... reading input pial surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.pial... reading input white surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 36 entries read (originally /Applications/freesurfer/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.DKTatlas40.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1147 761 2276 2.620 0.848 0.164 0.072 30 3.3 caudalanteriorcingulate 3517 2117 5286 2.377 0.507 0.144 0.073 58 11.6 caudalmiddlefrontal 2767 1530 3199 1.866 0.521 0.145 0.068 51 8.0 cuneus 620 414 1593 2.978 0.689 0.192 0.197 34 6.6 entorhinal 3288 2146 5636 2.307 0.623 0.163 0.082 76 10.9 fusiform 6887 4452 11511 2.354 0.557 0.148 0.058 109 16.7 inferiorparietal 5336 3474 11477 2.716 0.709 0.164 0.083 214 18.4 inferiortemporal 1423 856 2093 2.223 0.687 0.164 0.174 163 14.1 isthmuscingulate 7961 4672 10930 2.112 0.593 0.152 0.079 169 26.6 lateraloccipital 3833 2453 6725 2.395 0.754 0.204 0.232 200 44.1 lateralorbitofrontal 4077 2485 5129 1.879 0.539 0.183 0.176 204 41.0 lingual 1864 1215 3641 2.412 0.922 0.165 0.092 64 6.5 medialorbitofrontal 5778 3710 11637 2.642 0.585 0.142 0.154 859 14.9 middletemporal 787 523 1621 2.670 0.938 0.153 0.077 14 2.6 parahippocampal 2681 1617 3499 2.156 0.639 0.142 0.066 61 8.1 paracentral 2051 1322 3166 2.278 0.458 0.157 0.140 885 8.9 parsopercularis 1141 688 1836 2.209 0.580 0.179 0.115 36 5.9 parsorbitalis 2141 1347 3506 2.219 0.612 0.156 0.076 40 7.1 parstriangularis 2329 1515 2233 1.529 0.422 0.159 0.079 43 6.4 pericalcarine 6590 3984 8187 1.874 0.605 0.141 0.107 193 24.5 postcentral 1676 1092 2883 2.441 0.641 0.156 0.070 33 4.7 posteriorcingulate 7979 4978 11642 2.223 0.676 0.159 0.127 420 50.1 precentral 5613 3438 8238 2.124 0.579 0.142 0.076 122 19.5 precuneus 1089 686 2375 3.045 0.955 0.161 0.105 40 4.3 rostralanteriorcingulate 5316 3369 8788 2.285 0.546 0.166 0.126 168 27.7 rostralmiddlefrontal 13211 8119 22165 2.425 0.560 0.165 0.436 2255 80.1 superiorfrontal 7473 4462 10432 2.123 0.563 0.142 0.147 337 36.7 superiorparietal 6806 4375 13362 2.591 0.638 0.151 0.149 283 26.1 superiortemporal 4818 3082 7525 2.326 0.565 0.147 0.065 86 13.7 supramarginal 602 289 684 2.178 0.315 0.143 0.142 28 4.4 transversetemporal 2802 1787 5732 2.989 0.946 0.160 1.966 400 12.0 insula #-------------------------------------------- #@# Cortical ribbon mask Fri Dec 11 02:35:56 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri mris_volmask --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon T40_OM_Post SUBJECTS_DIR is /home/marco/scripts/pipelineT1/subjects loading input data... computing distance to left white surface computing distance to left pial surface computing distance to right white surface computing distance to right pial surface hemi masks overlap voxels = 31 writing volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/ribbon.mgz writing ribbon files #-------------------------------------------- #@# ASeg Stats Fri Dec 11 02:44:43 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /cdrom/Marco/freesurfer/ASegStatsLUT.txt --subject T40_OM_Post $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /cdrom/Marco/freesurfer/ASegStatsLUT.txt --subject T40_OM_Post sysname Linux hostname ubuntu machine x86_64 user marco UseRobust 0 atlas_icv (eTIV) = 1401408 mm^3 (det: 1.390106 ) Computing euler number orig.nofix lheno = -128, rheno = -138 orig.nofix lhholes = 65, rhholes = 70 Loading mri/aseg.mgz Getting Brain Volume Statistics lhCtxGM: 193757.595 193146.000 diff= 611.6 pctdiff= 0.316 rhCtxGM: 198223.890 197704.000 diff= 519.9 pctdiff= 0.262 lhCtxWM: 211901.537 212352.500 diff= -451.0 pctdiff=-0.213 rhCtxWM: 218399.737 219015.500 diff= -615.8 pctdiff=-0.282 SubCortGMVol 48844.000 SupraTentVol 910766.758 (909567.000) diff=1199.758 pctdiff=0.132 SupraTentVolNotVent 872499.758 (871300.000) diff=1199.758 pctdiff=0.138 BrainSegVol 1027879.000 (1024101.000) diff=3778.000 pctdiff=0.368 BrainSegVolNotVent 984719.000 (984477.758) diff=241.242 pctdiff=0.024 BrainSegVolNotVent 984719.000 CerebellumVol 113113.000 VentChorVol 38267.000 3rd4th5thCSF 4893.000 CSFVol 1150.000, OptChiasmVol 271.000 MaskVol 1513194.000 Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 50 segmentations Computing statistics for each segmentation 3 4 Left-Lateral-Ventricle 16631 16631.000 4 5 Left-Inf-Lat-Vent 861 860.718 5 7 Left-Cerebellum-White-Matter 10215 10215.142 6 8 Left-Cerebellum-Cortex 46299 46298.945 7 10 Left-Thalamus-Proper 7112 7112.239 8 11 Left-Caudate 3697 3696.532 9 12 Left-Putamen 3842 3842.026 10 13 Left-Pallidum 1353 1352.807 11 14 3rd-Ventricle 1542 1542.378 12 15 4th-Ventricle 2361 2361.099 13 16 Brain-Stem 18770 18770.141 14 17 Left-Hippocampus 3705 3705.158 15 18 Left-Amygdala 1281 1280.841 16 24 CSF 1081 1081.099 17 26 Left-Accumbens-area 427 427.313 18 28 Left-VentralDC 3172 3172.460 19 30 Left-vessel 167 167.096 20 31 Left-choroid-plexus 1898 1897.961 23 43 Right-Lateral-Ventricle 16110 16109.813 24 44 Right-Inf-Lat-Vent 489 488.676 25 46 Right-Cerebellum-White-Matter 10449 10449.361 26 47 Right-Cerebellum-Cortex 47697 47696.559 27 49 Right-Thalamus-Proper 5853 5853.278 28 50 Right-Caudate 3384 3384.291 29 51 Right-Putamen 3677 3677.215 30 52 Right-Pallidum 1359 1359.228 31 53 Right-Hippocampus 3743 3742.920 32 54 Right-Amygdala 1277 1276.785 33 58 Right-Accumbens-area 349 349.172 34 60 Right-VentralDC 3368 3367.892 35 62 Right-vessel 110 109.809 36 63 Right-choroid-plexus 2184 2184.151 37 72 5th-Ventricle 0 0.000 38 77 WM-hypointensities 1508 1508.348 39 78 Left-WM-hypointensities 0 0.000 40 79 Right-WM-hypointensities 0 0.000 41 80 non-WM-hypointensities 30 30.302 42 81 Left-non-WM-hypointensities 0 0.000 43 82 Right-non-WM-hypointensities 0 0.000 44 85 Optic-Chiasm 243 242.805 45 251 CC_Posterior 989 988.787 46 252 CC_Mid_Posterior 304 303.817 47 253 CC_Central 333 332.722 48 254 CC_Mid_Anterior 373 373.279 49 255 CC_Anterior 650 650.473 Reporting on 45 segmentations mri_segstats done #----------------------------------------- #@# AParc-to-ASeg Fri Dec 11 02:47:18 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post mri_aparc2aseg --s T40_OM_Post --volmask SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects subject T40_OM_Post outvol /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/aparc+aseg.mgz useribbon 0 baseoffset 0 RipUnknown 0 Reading lh white surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading lh pial surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.pial Loading lh annotations from /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Reading rh white surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading rh pial surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.pial Loading rh annotations from /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/ribbon.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 388940 Used brute-force search on 0 voxels Writing output aseg to /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/aparc+aseg.mgz /home/marco/scripts/pipelineT1/subjects/T40_OM_Post mri_aparc2aseg --s T40_OM_Post --volmask --a2009s SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects subject T40_OM_Post outvol /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/aparc.a2009s+aseg.mgz useribbon 0 baseoffset 10100 RipUnknown 0 Reading lh white surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading lh pial surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.pial Loading lh annotations from /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/label/lh.aparc.a2009s.annot reading colortable from annotation file... colortable with 76 entries read (originally /autofs/space/birn_044/users/christophe_atlas_rebuild//scripts_2008/Simple_surface_labels2009.txt) Reading rh white surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading rh pial surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.pial Loading rh annotations from /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/label/rh.aparc.a2009s.annot reading colortable from annotation file... colortable with 76 entries read (originally /autofs/space/birn_044/users/christophe_atlas_rebuild//scripts_2008/Simple_surface_labels2009.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/ribbon.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 388940 Used brute-force search on 0 voxels Writing output aseg to /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/aparc.a2009s+aseg.mgz #----------------------------------------- #@# WMParc Fri Dec 11 02:49:05 UTC 2015 /home/marco/scripts/pipelineT1/subjects/T40_OM_Post mri_aparc2aseg --s T40_OM_Post --labelwm --hypo-as-wm --rip-unknown --volmask --o mri/wmparc.mgz --ctxseg aparc+aseg.mgz SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects subject T40_OM_Post outvol mri/wmparc.mgz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 5.000000 RipUnknown 1 CtxSeg /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/aparc+aseg.mgz Reading lh white surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading lh pial surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.pial Loading lh annotations from /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Reading rh white surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading rh pial surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.pial Loading rh annotations from /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/ribbon.mgz Loading filled from /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/filled.mgz Ripping vertices labeled as unkown Ripped 8068 vertices from left hemi Ripped 8394 vertices from right hemi Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/aseg.mgz Loading Ctx Seg File /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/aparc+aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 819555 Used brute-force search on 239 voxels Fixing Parahip LH WM Found 5 clusters 0 k 1.000000 1 k 17.000000 2 k 1142.000000 3 k 1.000000 4 k 1.000000 Fixing Parahip RH WM Found 6 clusters 0 k 1119.000000 1 k 1.000000 2 k 1.000000 3 k 1.000000 4 k 1.000000 5 k 1.000000 Writing output aseg to mri/wmparc.mgz /home/marco/scripts/pipelineT1/subjects/T40_OM_Post mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject T40_OM_Post --surf-wm-vol --ctab /cdrom/Marco/freesurfer/WMParcStatsLUT.txt --etiv $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject T40_OM_Post --surf-wm-vol --ctab /cdrom/Marco/freesurfer/WMParcStatsLUT.txt --etiv sysname Linux hostname ubuntu machine x86_64 user marco UseRobust 0 atlas_icv (eTIV) = 1401408 mm^3 (det: 1.390106 ) Loading mri/wmparc.mgz Getting Brain Volume Statistics lhCtxGM: 193757.595 193146.000 diff= 611.6 pctdiff= 0.316 rhCtxGM: 198223.890 197704.000 diff= 519.9 pctdiff= 0.262 lhCtxWM: 211901.537 212352.500 diff= -451.0 pctdiff=-0.213 rhCtxWM: 218399.737 219015.500 diff= -615.8 pctdiff=-0.282 SubCortGMVol 48844.000 SupraTentVol 910766.758 (909567.000) diff=1199.758 pctdiff=0.132 SupraTentVolNotVent 872499.758 (871300.000) diff=1199.758 pctdiff=0.138 BrainSegVol 1027879.000 (1024101.000) diff=3778.000 pctdiff=0.368 BrainSegVolNotVent 984719.000 (984477.758) diff=241.242 pctdiff=0.024 BrainSegVolNotVent 984719.000 CerebellumVol 113113.000 VentChorVol 38267.000 3rd4th5thCSF 4893.000 CSFVol 1150.000, OptChiasmVol 271.000 MaskVol 1513194.000 Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 390 segmentations Computing statistics for each segmentation 0 3000 wm-lh-unknown 0 0.000 1 3001 wm-lh-bankssts 3094 3094.050 2 3002 wm-lh-caudalanteriorcingulate 3338 3337.664 3 3003 wm-lh-caudalmiddlefrontal 7407 7407.233 4 3004 wm-lh-corpuscallosum 0 0.000 5 3005 wm-lh-cuneus 2321 2320.622 6 3006 wm-lh-entorhinal 620 620.088 7 3007 wm-lh-fusiform 5578 5578.378 8 3008 wm-lh-inferiorparietal 8298 8298.012 9 3009 wm-lh-inferiortemporal 5495 5495.469 10 3010 wm-lh-isthmuscingulate 3741 3740.968 11 3011 wm-lh-lateraloccipital 10223 10223.178 12 3012 wm-lh-lateralorbitofrontal 5871 5871.120 13 3013 wm-lh-lingual 4247 4247.149 14 3014 wm-lh-medialorbitofrontal 3696 3695.665 15 3015 wm-lh-middletemporal 4981 4981.132 16 3016 wm-lh-parahippocampal 1283 1283.323 17 3017 wm-lh-paracentral 4448 4448.305 18 3018 wm-lh-parsopercularis 3884 3883.869 19 3019 wm-lh-parsorbitalis 780 779.605 20 3020 wm-lh-parstriangularis 2274 2273.860 21 3021 wm-lh-pericalcarine 3097 3096.810 22 3022 wm-lh-postcentral 7695 7695.140 23 3023 wm-lh-posteriorcingulate 4395 4394.563 24 3024 wm-lh-precentral 13886 13886.457 25 3025 wm-lh-precuneus 9340 9339.602 26 3026 wm-lh-rostralanteriorcingulate 2105 2104.939 27 3027 wm-lh-rostralmiddlefrontal 12295 12295.451 28 3028 wm-lh-superiorfrontal 16654 16653.750 29 3029 wm-lh-superiorparietal 13303 13303.297 30 3030 wm-lh-superiortemporal 6466 6466.302 31 3031 wm-lh-supramarginal 8470 8469.880 32 3032 wm-lh-frontalpole 166 165.875 33 3033 wm-lh-temporalpole 589 589.135 34 3034 wm-lh-transversetemporal 1034 1033.846 35 3035 wm-lh-insula 8225 8224.992 36 3100 wm-lh-Unknown 0 0.000 37 3101 wm-lh-Corpus_callosum 0 0.000 38 3102 wm-lh-G_and_S_Insula_ONLY_AVERAGE 0 0.000 39 3103 wm-lh-G_cingulate-Isthmus 0 0.000 40 3104 wm-lh-G_cingulate-Main_part 0 0.000 41 3105 wm-lh-G_cuneus 0 0.000 42 3106 wm-lh-G_frontal_inf-Opercular_part 0 0.000 43 3107 wm-lh-G_frontal_inf-Orbital_part 0 0.000 44 3108 wm-lh-G_frontal_inf-Triangular_part 0 0.000 45 3109 wm-lh-G_frontal_middle 0 0.000 46 3110 wm-lh-G_frontal_superior 0 0.000 47 3111 wm-lh-G_frontomarginal 0 0.000 48 3112 wm-lh-G_insular_long 0 0.000 49 3113 wm-lh-G_insular_short 0 0.000 50 3114 wm-lh-G_and_S_occipital_inferior 0 0.000 51 3115 wm-lh-G_occipital_middle 0 0.000 52 3116 wm-lh-G_occipital_superior 0 0.000 53 3117 wm-lh-G_occipit-temp_lat-Or_fusiform 0 0.000 54 3118 wm-lh-G_occipit-temp_med-Lingual_part 0 0.000 55 3119 wm-lh-G_occipit-temp_med-Parahippocampal_part 0 0.000 56 3120 wm-lh-G_orbital 0 0.000 57 3121 wm-lh-G_paracentral 0 0.000 58 3122 wm-lh-G_parietal_inferior-Angular_part 0 0.000 59 3123 wm-lh-G_parietal_inferior-Supramarginal_part 0 0.000 60 3124 wm-lh-G_parietal_superior 0 0.000 61 3125 wm-lh-G_postcentral 0 0.000 62 3126 wm-lh-G_precentral 0 0.000 63 3127 wm-lh-G_precuneus 0 0.000 64 3128 wm-lh-G_rectus 0 0.000 65 3129 wm-lh-G_subcallosal 0 0.000 66 3130 wm-lh-G_subcentral 0 0.000 67 3131 wm-lh-G_temporal_inferior 0 0.000 68 3132 wm-lh-G_temporal_middle 0 0.000 69 3133 wm-lh-G_temp_sup-G_temp_transv_and_interm_S 0 0.000 70 3134 wm-lh-G_temp_sup-Lateral_aspect 0 0.000 71 3135 wm-lh-G_temp_sup-Planum_polare 0 0.000 72 3136 wm-lh-G_temp_sup-Planum_tempolare 0 0.000 73 3137 wm-lh-G_and_S_transverse_frontopolar 0 0.000 74 3138 wm-lh-Lat_Fissure-ant_sgt-ramus_horizontal 0 0.000 75 3139 wm-lh-Lat_Fissure-ant_sgt-ramus_vertical 0 0.000 76 3140 wm-lh-Lat_Fissure-post_sgt 0 0.000 77 3141 wm-lh-Medial_wall 0 0.000 78 3142 wm-lh-Pole_occipital 0 0.000 79 3143 wm-lh-Pole_temporal 0 0.000 80 3144 wm-lh-S_calcarine 0 0.000 81 3145 wm-lh-S_central 0 0.000 82 3146 wm-lh-S_central_insula 0 0.000 83 3147 wm-lh-S_cingulate-Main_part_and_Intracingulate 0 0.000 84 3148 wm-lh-S_cingulate-Marginalis_part 0 0.000 85 3149 wm-lh-S_circular_insula_anterior 0 0.000 86 3150 wm-lh-S_circular_insula_inferior 0 0.000 87 3151 wm-lh-S_circular_insula_superior 0 0.000 88 3152 wm-lh-S_collateral_transverse_ant 0 0.000 89 3153 wm-lh-S_collateral_transverse_post 0 0.000 90 3154 wm-lh-S_frontal_inferior 0 0.000 91 3155 wm-lh-S_frontal_middle 0 0.000 92 3156 wm-lh-S_frontal_superior 0 0.000 93 3157 wm-lh-S_frontomarginal 0 0.000 94 3158 wm-lh-S_intermedius_primus-Jensen 0 0.000 95 3159 wm-lh-S_intraparietal-and_Parietal_transverse 0 0.000 96 3160 wm-lh-S_occipital_anterior 0 0.000 97 3161 wm-lh-S_occipital_middle_and_Lunatus 0 0.000 98 3162 wm-lh-S_occipital_superior_and_transversalis 0 0.000 99 3163 wm-lh-S_occipito-temporal_lateral 0 0.000 100 3164 wm-lh-S_occipito-temporal_medial_and_S_Lingual 0 0.000 101 3165 wm-lh-S_orbital-H_shapped 0 0.000 102 3166 wm-lh-S_orbital_lateral 0 0.000 103 3167 wm-lh-S_orbital_medial-Or_olfactory 0 0.000 104 3168 wm-lh-S_paracentral 0 0.000 105 3169 wm-lh-S_parieto_occipital 0 0.000 106 3170 wm-lh-S_pericallosal 0 0.000 107 3171 wm-lh-S_postcentral 0 0.000 108 3172 wm-lh-S_precentral-Inferior-part 0 0.000 109 3173 wm-lh-S_precentral-Superior-part 0 0.000 110 3174 wm-lh-S_subcentral_ant 0 0.000 111 3175 wm-lh-S_subcentral_post 0 0.000 112 3176 wm-lh-S_suborbital 0 0.000 113 3177 wm-lh-S_subparietal 0 0.000 114 3178 wm-lh-S_supracingulate 0 0.000 115 3179 wm-lh-S_temporal_inferior 0 0.000 116 3180 wm-lh-S_temporal_superior 0 0.000 117 3181 wm-lh-S_temporal_transverse 0 0.000 118 4000 wm-rh-unknown 0 0.000 119 4001 wm-rh-bankssts 2469 2469.188 120 4002 wm-rh-caudalanteriorcingulate 2873 2873.181 121 4003 wm-rh-caudalmiddlefrontal 6730 6729.933 122 4004 wm-rh-corpuscallosum 0 0.000 123 4005 wm-rh-cuneus 2347 2346.692 124 4006 wm-rh-entorhinal 686 685.705 125 4007 wm-rh-fusiform 5900 5900.080 126 4008 wm-rh-inferiorparietal 11249 11248.770 127 4009 wm-rh-inferiortemporal 5997 5996.611 128 4010 wm-rh-isthmuscingulate 3314 3314.287 129 4011 wm-rh-lateraloccipital 10436 10435.632 130 4012 wm-rh-lateralorbitofrontal 5944 5943.548 131 4013 wm-rh-lingual 4971 4970.898 132 4014 wm-rh-medialorbitofrontal 3001 3000.968 133 4015 wm-rh-middletemporal 5602 5601.590 134 4016 wm-rh-parahippocampal 1209 1209.165 135 4017 wm-rh-paracentral 5180 5180.352 136 4018 wm-rh-parsopercularis 3467 3466.635 137 4019 wm-rh-parsorbitalis 1050 1050.061 138 4020 wm-rh-parstriangularis 2913 2912.500 139 4021 wm-rh-pericalcarine 3715 3714.955 140 4022 wm-rh-postcentral 7259 7258.618 141 4023 wm-rh-posteriorcingulate 4458 4458.425 142 4024 wm-rh-precentral 16316 16315.722 143 4025 wm-rh-precuneus 9437 9436.950 144 4026 wm-rh-rostralanteriorcingulate 2621 2621.165 145 4027 wm-rh-rostralmiddlefrontal 12197 12197.326 146 4028 wm-rh-superiorfrontal 15969 15968.520 147 4029 wm-rh-superiorparietal 12283 12283.181 148 4030 wm-rh-superiortemporal 5822 5821.774 149 4031 wm-rh-supramarginal 8619 8619.438 150 4032 wm-rh-frontalpole 200 199.747 151 4033 wm-rh-temporalpole 569 568.883 152 4034 wm-rh-transversetemporal 644 644.445 153 4035 wm-rh-insula 7761 7761.295 154 4100 wm-rh-Unknown 0 0.000 155 4101 wm-rh-Corpus_callosum 0 0.000 156 4102 wm-rh-G_and_S_Insula_ONLY_AVERAGE 0 0.000 157 4103 wm-rh-G_cingulate-Isthmus 0 0.000 158 4104 wm-rh-G_cingulate-Main_part 0 0.000 159 4105 wm-rh-G_cuneus 0 0.000 160 4106 wm-rh-G_frontal_inf-Opercular_part 0 0.000 161 4107 wm-rh-G_frontal_inf-Orbital_part 0 0.000 162 4108 wm-rh-G_frontal_inf-Triangular_part 0 0.000 163 4109 wm-rh-G_frontal_middle 0 0.000 164 4110 wm-rh-G_frontal_superior 0 0.000 165 4111 wm-rh-G_frontomarginal 0 0.000 166 4112 wm-rh-G_insular_long 0 0.000 167 4113 wm-rh-G_insular_short 0 0.000 168 4114 wm-rh-G_and_S_occipital_inferior 0 0.000 169 4115 wm-rh-G_occipital_middle 0 0.000 170 4116 wm-rh-G_occipital_superior 0 0.000 171 4117 wm-rh-G_occipit-temp_lat-Or_fusiform 0 0.000 172 4118 wm-rh-G_occipit-temp_med-Lingual_part 0 0.000 173 4119 wm-rh-G_occipit-temp_med-Parahippocampal_part 0 0.000 174 4120 wm-rh-G_orbital 0 0.000 175 4121 wm-rh-G_paracentral 0 0.000 176 4122 wm-rh-G_parietal_inferior-Angular_part 0 0.000 177 4123 wm-rh-G_parietal_inferior-Supramarginal_part 0 0.000 178 4124 wm-rh-G_parietal_superior 0 0.000 179 4125 wm-rh-G_postcentral 0 0.000 180 4126 wm-rh-G_precentral 0 0.000 181 4127 wm-rh-G_precuneus 0 0.000 182 4128 wm-rh-G_rectus 0 0.000 183 4129 wm-rh-G_subcallosal 0 0.000 184 4130 wm-rh-G_subcentral 0 0.000 185 4131 wm-rh-G_temporal_inferior 0 0.000 186 4132 wm-rh-G_temporal_middle 0 0.000 187 4133 wm-rh-G_temp_sup-G_temp_transv_and_interm_S 0 0.000 188 4134 wm-rh-G_temp_sup-Lateral_aspect 0 0.000 189 4135 wm-rh-G_temp_sup-Planum_polare 0 0.000 190 4136 wm-rh-G_temp_sup-Planum_tempolare 0 0.000 191 4137 wm-rh-G_and_S_transverse_frontopolar 0 0.000 192 4138 wm-rh-Lat_Fissure-ant_sgt-ramus_horizontal 0 0.000 193 4139 wm-rh-Lat_Fissure-ant_sgt-ramus_vertical 0 0.000 194 4140 wm-rh-Lat_Fissure-post_sgt 0 0.000 195 4141 wm-rh-Medial_wall 0 0.000 196 4142 wm-rh-Pole_occipital 0 0.000 197 4143 wm-rh-Pole_temporal 0 0.000 198 4144 wm-rh-S_calcarine 0 0.000 199 4145 wm-rh-S_central 0 0.000 200 4146 wm-rh-S_central_insula 0 0.000 201 4147 wm-rh-S_cingulate-Main_part_and_Intracingulate 0 0.000 202 4148 wm-rh-S_cingulate-Marginalis_part 0 0.000 203 4149 wm-rh-S_circular_insula_anterior 0 0.000 204 4150 wm-rh-S_circular_insula_inferior 0 0.000 205 4151 wm-rh-S_circular_insula_superior 0 0.000 206 4152 wm-rh-S_collateral_transverse_ant 0 0.000 207 4153 wm-rh-S_collateral_transverse_post 0 0.000 208 4154 wm-rh-S_frontal_inferior 0 0.000 209 4155 wm-rh-S_frontal_middle 0 0.000 210 4156 wm-rh-S_frontal_superior 0 0.000 211 4157 wm-rh-S_frontomarginal 0 0.000 212 4158 wm-rh-S_intermedius_primus-Jensen 0 0.000 213 4159 wm-rh-S_intraparietal-and_Parietal_transverse 0 0.000 214 4160 wm-rh-S_occipital_anterior 0 0.000 215 4161 wm-rh-S_occipital_middle_and_Lunatus 0 0.000 216 4162 wm-rh-S_occipital_superior_and_transversalis 0 0.000 217 4163 wm-rh-S_occipito-temporal_lateral 0 0.000 218 4164 wm-rh-S_occipito-temporal_medial_and_S_Lingual 0 0.000 219 4165 wm-rh-S_orbital-H_shapped 0 0.000 220 4166 wm-rh-S_orbital_lateral 0 0.000 221 4167 wm-rh-S_orbital_medial-Or_olfactory 0 0.000 222 4168 wm-rh-S_paracentral 0 0.000 223 4169 wm-rh-S_parieto_occipital 0 0.000 224 4170 wm-rh-S_pericallosal 0 0.000 225 4171 wm-rh-S_postcentral 0 0.000 226 4172 wm-rh-S_precentral-Inferior-part 0 0.000 227 4173 wm-rh-S_precentral-Superior-part 0 0.000 228 4174 wm-rh-S_subcentral_ant 0 0.000 229 4175 wm-rh-S_subcentral_post 0 0.000 230 4176 wm-rh-S_suborbital 0 0.000 231 4177 wm-rh-S_subparietal 0 0.000 232 4178 wm-rh-S_supracingulate 0 0.000 233 4179 wm-rh-S_temporal_inferior 0 0.000 234 4180 wm-rh-S_temporal_superior 0 0.000 235 4181 wm-rh-S_temporal_transverse 0 0.000 236 5001 Left-UnsegmentedWhiteMatter 26226 26225.590 237 5002 Right-UnsegmentedWhiteMatter 28591 28590.672 238 13100 wm_lh_Unknown 0 0.000 239 13101 wm_lh_G_and_S_frontomargin 0 0.000 240 13102 wm_lh_G_and_S_occipital_inf 0 0.000 241 13103 wm_lh_G_and_S_paracentral 0 0.000 242 13104 wm_lh_G_and_S_subcentral 0 0.000 243 13105 wm_lh_G_and_S_transv_frontopol 0 0.000 244 13106 wm_lh_G_and_S_cingul-Ant 0 0.000 245 13107 wm_lh_G_and_S_cingul-Mid-Ant 0 0.000 246 13108 wm_lh_G_and_S_cingul-Mid-Post 0 0.000 247 13109 wm_lh_G_cingul-Post-dorsal 0 0.000 248 13110 wm_lh_G_cingul-Post-ventral 0 0.000 249 13111 wm_lh_G_cuneus 0 0.000 250 13112 wm_lh_G_front_inf-Opercular 0 0.000 251 13113 wm_lh_G_front_inf-Orbital 0 0.000 252 13114 wm_lh_G_front_inf-Triangul 0 0.000 253 13115 wm_lh_G_front_middle 0 0.000 254 13116 wm_lh_G_front_sup 0 0.000 255 13117 wm_lh_G_Ins_lg_and_S_cent_ins 0 0.000 256 13118 wm_lh_G_insular_short 0 0.000 257 13119 wm_lh_G_occipital_middle 0 0.000 258 13120 wm_lh_G_occipital_sup 0 0.000 259 13121 wm_lh_G_oc-temp_lat-fusifor 0 0.000 260 13122 wm_lh_G_oc-temp_med-Lingual 0 0.000 261 13123 wm_lh_G_oc-temp_med-Parahip 0 0.000 262 13124 wm_lh_G_orbital 0 0.000 263 13125 wm_lh_G_pariet_inf-Angular 0 0.000 264 13126 wm_lh_G_pariet_inf-Supramar 0 0.000 265 13127 wm_lh_G_parietal_sup 0 0.000 266 13128 wm_lh_G_postcentral 0 0.000 267 13129 wm_lh_G_precentral 0 0.000 268 13130 wm_lh_G_precuneus 0 0.000 269 13131 wm_lh_G_rectus 0 0.000 270 13132 wm_lh_G_subcallosal 0 0.000 271 13133 wm_lh_G_temp_sup-G_T_transv 0 0.000 272 13134 wm_lh_G_temp_sup-Lateral 0 0.000 273 13135 wm_lh_G_temp_sup-Plan_polar 0 0.000 274 13136 wm_lh_G_temp_sup-Plan_tempo 0 0.000 275 13137 wm_lh_G_temporal_inf 0 0.000 276 13138 wm_lh_G_temporal_middle 0 0.000 277 13139 wm_lh_Lat_Fis-ant-Horizont 0 0.000 278 13140 wm_lh_Lat_Fis-ant-Vertical 0 0.000 279 13141 wm_lh_Lat_Fis-post 0 0.000 280 13142 wm_lh_Medial_wall 0 0.000 281 13143 wm_lh_Pole_occipital 0 0.000 282 13144 wm_lh_Pole_temporal 0 0.000 283 13145 wm_lh_S_calcarine 0 0.000 284 13146 wm_lh_S_central 0 0.000 285 13147 wm_lh_S_cingul-Marginalis 0 0.000 286 13148 wm_lh_S_circular_insula_ant 0 0.000 287 13149 wm_lh_S_circular_insula_inf 0 0.000 288 13150 wm_lh_S_circular_insula_sup 0 0.000 289 13151 wm_lh_S_collat_transv_ant 0 0.000 290 13152 wm_lh_S_collat_transv_post 0 0.000 291 13153 wm_lh_S_front_inf 0 0.000 292 13154 wm_lh_S_front_middle 0 0.000 293 13155 wm_lh_S_front_sup 0 0.000 294 13156 wm_lh_S_interm_prim-Jensen 0 0.000 295 13157 wm_lh_S_intrapariet_and_P_trans 0 0.000 296 13158 wm_lh_S_oc_middle_and_Lunatus 0 0.000 297 13159 wm_lh_S_oc_sup_and_transversal 0 0.000 298 13160 wm_lh_S_occipital_ant 0 0.000 299 13161 wm_lh_S_oc-temp_lat 0 0.000 300 13162 wm_lh_S_oc-temp_med_and_Lingual 0 0.000 301 13163 wm_lh_S_orbital_lateral 0 0.000 302 13164 wm_lh_S_orbital_med-olfact 0 0.000 303 13165 wm_lh_S_orbital-H_Shaped 0 0.000 304 13166 wm_lh_S_parieto_occipital 0 0.000 305 13167 wm_lh_S_pericallosal 0 0.000 306 13168 wm_lh_S_postcentral 0 0.000 307 13169 wm_lh_S_precentral-inf-part 0 0.000 308 13170 wm_lh_S_precentral-sup-part 0 0.000 309 13171 wm_lh_S_suborbital 0 0.000 310 13172 wm_lh_S_subparietal 0 0.000 311 13173 wm_lh_S_temporal_inf 0 0.000 312 13174 wm_lh_S_temporal_sup 0 0.000 313 13175 wm_lh_S_temporal_transverse 0 0.000 314 14100 wm_rh_Unknown 0 0.000 315 14101 wm_rh_G_and_S_frontomargin 0 0.000 316 14102 wm_rh_G_and_S_occipital_inf 0 0.000 317 14103 wm_rh_G_and_S_paracentral 0 0.000 318 14104 wm_rh_G_and_S_subcentral 0 0.000 319 14105 wm_rh_G_and_S_transv_frontopol 0 0.000 320 14106 wm_rh_G_and_S_cingul-Ant 0 0.000 321 14107 wm_rh_G_and_S_cingul-Mid-Ant 0 0.000 322 14108 wm_rh_G_and_S_cingul-Mid-Post 0 0.000 323 14109 wm_rh_G_cingul-Post-dorsal 0 0.000 324 14110 wm_rh_G_cingul-Post-ventral 0 0.000 325 14111 wm_rh_G_cuneus 0 0.000 326 14112 wm_rh_G_front_inf-Opercular 0 0.000 327 14113 wm_rh_G_front_inf-Orbital 0 0.000 328 14114 wm_rh_G_front_inf-Triangul 0 0.000 329 14115 wm_rh_G_front_middle 0 0.000 330 14116 wm_rh_G_front_sup 0 0.000 331 14117 wm_rh_G_Ins_lg_and_S_cent_ins 0 0.000 332 14118 wm_rh_G_insular_short 0 0.000 333 14119 wm_rh_G_occipital_middle 0 0.000 334 14120 wm_rh_G_occipital_sup 0 0.000 335 14121 wm_rh_G_oc-temp_lat-fusifor 0 0.000 336 14122 wm_rh_G_oc-temp_med-Lingual 0 0.000 337 14123 wm_rh_G_oc-temp_med-Parahip 0 0.000 338 14124 wm_rh_G_orbital 0 0.000 339 14125 wm_rh_G_pariet_inf-Angular 0 0.000 340 14126 wm_rh_G_pariet_inf-Supramar 0 0.000 341 14127 wm_rh_G_parietal_sup 0 0.000 342 14128 wm_rh_G_postcentral 0 0.000 343 14129 wm_rh_G_precentral 0 0.000 344 14130 wm_rh_G_precuneus 0 0.000 345 14131 wm_rh_G_rectus 0 0.000 346 14132 wm_rh_G_subcallosal 0 0.000 347 14133 wm_rh_G_temp_sup-G_T_transv 0 0.000 348 14134 wm_rh_G_temp_sup-Lateral 0 0.000 349 14135 wm_rh_G_temp_sup-Plan_polar 0 0.000 350 14136 wm_rh_G_temp_sup-Plan_tempo 0 0.000 351 14137 wm_rh_G_temporal_inf 0 0.000 352 14138 wm_rh_G_temporal_middle 0 0.000 353 14139 wm_rh_Lat_Fis-ant-Horizont 0 0.000 354 14140 wm_rh_Lat_Fis-ant-Vertical 0 0.000 355 14141 wm_rh_Lat_Fis-post 0 0.000 356 14142 wm_rh_Medial_wall 0 0.000 357 14143 wm_rh_Pole_occipital 0 0.000 358 14144 wm_rh_Pole_temporal 0 0.000 359 14145 wm_rh_S_calcarine 0 0.000 360 14146 wm_rh_S_central 0 0.000 361 14147 wm_rh_S_cingul-Marginalis 0 0.000 362 14148 wm_rh_S_circular_insula_ant 0 0.000 363 14149 wm_rh_S_circular_insula_inf 0 0.000 364 14150 wm_rh_S_circular_insula_sup 0 0.000 365 14151 wm_rh_S_collat_transv_ant 0 0.000 366 14152 wm_rh_S_collat_transv_post 0 0.000 367 14153 wm_rh_S_front_inf 0 0.000 368 14154 wm_rh_S_front_middle 0 0.000 369 14155 wm_rh_S_front_sup 0 0.000 370 14156 wm_rh_S_interm_prim-Jensen 0 0.000 371 14157 wm_rh_S_intrapariet_and_P_trans 0 0.000 372 14158 wm_rh_S_oc_middle_and_Lunatus 0 0.000 373 14159 wm_rh_S_oc_sup_and_transversal 0 0.000 374 14160 wm_rh_S_occipital_ant 0 0.000 375 14161 wm_rh_S_oc-temp_lat 0 0.000 376 14162 wm_rh_S_oc-temp_med_and_Lingual 0 0.000 377 14163 wm_rh_S_orbital_lateral 0 0.000 378 14164 wm_rh_S_orbital_med-olfact 0 0.000 379 14165 wm_rh_S_orbital-H_Shaped 0 0.000 380 14166 wm_rh_S_parieto_occipital 0 0.000 381 14167 wm_rh_S_pericallosal 0 0.000 382 14168 wm_rh_S_postcentral 0 0.000 383 14169 wm_rh_S_precentral-inf-part 0 0.000 384 14170 wm_rh_S_precentral-sup-part 0 0.000 385 14171 wm_rh_S_suborbital 0 0.000 386 14172 wm_rh_S_subparietal 0 0.000 387 14173 wm_rh_S_temporal_inf 0 0.000 388 14174 wm_rh_S_temporal_sup 0 0.000 389 14175 wm_rh_S_temporal_transverse 0 0.000 Reporting on 70 segmentations mri_segstats done /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/label #-------------------------------------------- #@# BA Labels lh Fri Dec 11 02:55:18 UTC 2015 mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA1.label --trgsubject T40_OM_Post --trglabel ./lh.BA1.label --hemi lh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA1.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA1.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 4129 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4129 nlabel points Performing mapping from target back to the source label 130281 Number of reverse mapping hits = 288 Checking for and removing duplicates Writing label file ./lh.BA1.label 4417 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA2.label --trgsubject T40_OM_Post --trglabel ./lh.BA2.label --hemi lh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA2.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA2.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 7909 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 7909 nlabel points Performing mapping from target back to the source label 130281 Number of reverse mapping hits = 476 Checking for and removing duplicates Writing label file ./lh.BA2.label 8385 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA3a.label --trgsubject T40_OM_Post --trglabel ./lh.BA3a.label --hemi lh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA3a.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA3a.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 4077 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4077 nlabel points Performing mapping from target back to the source label 130281 Number of reverse mapping hits = 93 Checking for and removing duplicates Writing label file ./lh.BA3a.label 4170 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA3b.label --trgsubject T40_OM_Post --trglabel ./lh.BA3b.label --hemi lh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA3b.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA3b.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 5983 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5983 nlabel points Performing mapping from target back to the source label 130281 Number of reverse mapping hits = 245 Checking for and removing duplicates Writing label file ./lh.BA3b.label 6228 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA4a.label --trgsubject T40_OM_Post --trglabel ./lh.BA4a.label --hemi lh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA4a.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA4a.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 5784 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5784 nlabel points Performing mapping from target back to the source label 130281 Number of reverse mapping hits = 600 Checking for and removing duplicates Writing label file ./lh.BA4a.label 6384 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA4p.label --trgsubject T40_OM_Post --trglabel ./lh.BA4p.label --hemi lh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA4p.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA4p.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 4070 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4070 nlabel points Performing mapping from target back to the source label 130281 Number of reverse mapping hits = 190 Checking for and removing duplicates Writing label file ./lh.BA4p.label 4260 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA6.label --trgsubject T40_OM_Post --trglabel ./lh.BA6.label --hemi lh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA6.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA6.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 13589 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 13589 nlabel points Performing mapping from target back to the source label 130281 Number of reverse mapping hits = 2010 Checking for and removing duplicates Writing label file ./lh.BA6.label 15599 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA44.label --trgsubject T40_OM_Post --trglabel ./lh.BA44.label --hemi lh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA44.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA44.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 4181 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4181 nlabel points Performing mapping from target back to the source label 130281 Number of reverse mapping hits = 839 Checking for and removing duplicates Writing label file ./lh.BA44.label 5020 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA45.label --trgsubject T40_OM_Post --trglabel ./lh.BA45.label --hemi lh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA45.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA45.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 3422 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3422 nlabel points Performing mapping from target back to the source label 130281 Number of reverse mapping hits = 867 Checking for and removing duplicates Writing label file ./lh.BA45.label 4289 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.V1.label --trgsubject T40_OM_Post --trglabel ./lh.V1.label --hemi lh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.V1.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.V1.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 4641 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4641 nlabel points Performing mapping from target back to the source label 130281 Number of reverse mapping hits = 1338 Checking for and removing duplicates Writing label file ./lh.V1.label 5979 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.V2.label --trgsubject T40_OM_Post --trglabel ./lh.V2.label --hemi lh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.V2.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.V2.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 8114 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 8114 nlabel points Performing mapping from target back to the source label 130281 Number of reverse mapping hits = 2935 Checking for and removing duplicates Writing label file ./lh.V2.label 11049 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.MT.label --trgsubject T40_OM_Post --trglabel ./lh.MT.label --hemi lh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.MT.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.MT.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 2018 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2018 nlabel points Performing mapping from target back to the source label 130281 Number of reverse mapping hits = 257 Checking for and removing duplicates Writing label file ./lh.MT.label 2275 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.perirhinal.label --trgsubject T40_OM_Post --trglabel ./lh.perirhinal.label --hemi lh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.perirhinal.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.perirhinal.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 1199 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1199 nlabel points Performing mapping from target back to the source label 130281 Number of reverse mapping hits = 151 Checking for and removing duplicates Writing label file ./lh.perirhinal.label 1350 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA1.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.BA1.thresh.label --hemi lh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA1.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA1.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 1014 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1014 nlabel points Performing mapping from target back to the source label 130281 Number of reverse mapping hits = 88 Checking for and removing duplicates Writing label file ./lh.BA1.thresh.label 1102 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA2.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.BA2.thresh.label --hemi lh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA2.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA2.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 2092 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2092 nlabel points Performing mapping from target back to the source label 130281 Number of reverse mapping hits = 210 Checking for and removing duplicates Writing label file ./lh.BA2.thresh.label 2302 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA3a.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.BA3a.thresh.label --hemi lh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA3a.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA3a.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 1504 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1504 nlabel points Performing mapping from target back to the source label 130281 Number of reverse mapping hits = 26 Checking for and removing duplicates Writing label file ./lh.BA3a.thresh.label 1530 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA3b.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.BA3b.thresh.label --hemi lh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA3b.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA3b.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 1996 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1996 nlabel points Performing mapping from target back to the source label 130281 Number of reverse mapping hits = 75 Checking for and removing duplicates Writing label file ./lh.BA3b.thresh.label 2071 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA4a.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.BA4a.thresh.label --hemi lh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA4a.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA4a.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 2319 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2319 nlabel points Performing mapping from target back to the source label 130281 Number of reverse mapping hits = 216 Checking for and removing duplicates Writing label file ./lh.BA4a.thresh.label 2535 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA4p.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.BA4p.thresh.label --hemi lh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA4p.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA4p.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 1549 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1549 nlabel points Performing mapping from target back to the source label 130281 Number of reverse mapping hits = 30 Checking for and removing duplicates Writing label file ./lh.BA4p.thresh.label 1579 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA6.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.BA6.thresh.label --hemi lh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA6.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA6.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 7035 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 7035 nlabel points Performing mapping from target back to the source label 130281 Number of reverse mapping hits = 956 Checking for and removing duplicates Writing label file ./lh.BA6.thresh.label 7991 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA44.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.BA44.thresh.label --hemi lh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA44.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA44.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 1912 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1912 nlabel points Performing mapping from target back to the source label 130281 Number of reverse mapping hits = 356 Checking for and removing duplicates Writing label file ./lh.BA44.thresh.label 2268 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA45.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.BA45.thresh.label --hemi lh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.BA45.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA45.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 1151 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1151 nlabel points Performing mapping from target back to the source label 130281 Number of reverse mapping hits = 330 Checking for and removing duplicates Writing label file ./lh.BA45.thresh.label 1481 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.V1.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.V1.thresh.label --hemi lh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.V1.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.V1.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 3405 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3405 nlabel points Performing mapping from target back to the source label 130281 Number of reverse mapping hits = 849 Checking for and removing duplicates Writing label file ./lh.V1.thresh.label 4254 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.V2.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.V2.thresh.label --hemi lh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.V2.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.V2.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 3334 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3334 nlabel points Performing mapping from target back to the source label 130281 Number of reverse mapping hits = 1514 Checking for and removing duplicates Writing label file ./lh.V2.thresh.label 4848 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.MT.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.MT.thresh.label --hemi lh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/lh.MT.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.MT.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 513 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 513 nlabel points Performing mapping from target back to the source label 130281 Number of reverse mapping hits = 51 Checking for and removing duplicates Writing label file ./lh.MT.thresh.label 564 mri_label2label: Done mris_label2annot --s T40_OM_Post --hemi lh --ctab /cdrom/Marco/freesurfer/average/colortable_BA.txt --l lh.BA1.label --l lh.BA2.label --l lh.BA3a.label --l lh.BA3b.label --l lh.BA4a.label --l lh.BA4p.label --l lh.BA6.label --l lh.BA44.label --l lh.BA45.label --l lh.V1.label --l lh.V2.label --l lh.MT.label --l lh.perirhinal.label --a BA --maxstatwinner --noverbose Reading ctab /cdrom/Marco/freesurfer/average/colortable_BA.txt Number of ctab entries 14 $Id: mris_label2annot.c,v 1.17 2011/03/02 00:04:32 nicks Exp $ cwd /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/label cmdline mris_label2annot --s T40_OM_Post --hemi lh --ctab /cdrom/Marco/freesurfer/average/colortable_BA.txt --l lh.BA1.label --l lh.BA2.label --l lh.BA3a.label --l lh.BA3b.label --l lh.BA4a.label --l lh.BA4p.label --l lh.BA6.label --l lh.BA44.label --l lh.BA45.label --l lh.V1.label --l lh.V2.label --l lh.MT.label --l lh.perirhinal.label --a BA --maxstatwinner --noverbose sysname Linux hostname ubuntu machine x86_64 user marco subject T40_OM_Post hemi lh SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects ColorTable /cdrom/Marco/freesurfer/average/colortable_BA.txt AnnotName BA nlables 13 LabelThresh 0 0.000000 Loading /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.orig 1 1530880 BA1 2 16749699 BA2 3 16711680 BA3a 4 3368703 BA3b 5 1376196 BA4a 6 13382655 BA4p 7 10036737 BA6 8 2490521 BA44 9 39283 BA45 10 3993 V1 11 8508928 V2 12 10027163 MT 13 16422433 perirhinal Mapping unhit to unknown Found 88936 unhit vertices Writing annot to /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/label/lh.BA.annot mris_label2annot --s T40_OM_Post --hemi lh --ctab /cdrom/Marco/freesurfer/average/colortable_BA.txt --l lh.BA1.thresh.label --l lh.BA2.thresh.label --l lh.BA3a.thresh.label --l lh.BA3b.thresh.label --l lh.BA4a.thresh.label --l lh.BA4p.thresh.label --l lh.BA6.thresh.label --l lh.BA44.thresh.label --l lh.BA45.thresh.label --l lh.V1.thresh.label --l lh.V2.thresh.label --l lh.MT.thresh.label --a BA.thresh --maxstatwinner --noverbose Reading ctab /cdrom/Marco/freesurfer/average/colortable_BA.txt Number of ctab entries 14 $Id: mris_label2annot.c,v 1.17 2011/03/02 00:04:32 nicks Exp $ cwd /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/label cmdline mris_label2annot --s T40_OM_Post --hemi lh --ctab /cdrom/Marco/freesurfer/average/colortable_BA.txt --l lh.BA1.thresh.label --l lh.BA2.thresh.label --l lh.BA3a.thresh.label --l lh.BA3b.thresh.label --l lh.BA4a.thresh.label --l lh.BA4p.thresh.label --l lh.BA6.thresh.label --l lh.BA44.thresh.label --l lh.BA45.thresh.label --l lh.V1.thresh.label --l lh.V2.thresh.label --l lh.MT.thresh.label --a BA.thresh --maxstatwinner --noverbose sysname Linux hostname ubuntu machine x86_64 user marco subject T40_OM_Post hemi lh SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects ColorTable /cdrom/Marco/freesurfer/average/colortable_BA.txt AnnotName BA.thresh nlables 12 LabelThresh 0 0.000000 Loading /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.orig 1 1530880 BA1 2 16749699 BA2 3 16711680 BA3a 4 3368703 BA3b 5 1376196 BA4a 6 13382655 BA4p 7 10036737 BA6 8 2490521 BA44 9 39283 BA45 10 3993 V1 11 8508928 V2 12 10027163 MT Mapping unhit to unknown Found 106116 unhit vertices Writing annot to /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/label/lh.BA.thresh.annot mris_anatomical_stats -mgz -f ../stats/lh.BA.stats -b -a ./lh.BA.annot -c ./BA.ctab T40_OM_Post lh white computing statistics for each annotation in ./lh.BA.annot. reading volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white... reading input pial surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.pial... reading input white surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white... INFO: assuming MGZ format for volumes. reading colortable from annotation file... colortable with 14 entries read (originally /cdrom/Marco/freesurfer/average/colortable_BA.txt) Saving annotation colortable ./BA.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1169 549 1414 2.002 0.477 0.164 0.101 40 5.7 BA1 3835 2339 4681 2.021 0.506 0.136 0.060 57 9.8 BA2 897 656 821 1.635 0.381 0.186 0.092 18 3.4 BA3a 2142 1360 2567 1.684 0.537 0.135 0.057 28 5.5 BA3b 1820 1049 2660 2.237 0.689 0.159 0.233 85 6.6 BA4a 1121 819 1409 1.807 0.731 0.153 0.062 15 3.4 BA4p 10265 5617 16271 2.524 0.659 0.155 0.176 569 65.2 BA6 2762 1664 4203 2.296 0.521 0.143 0.092 82 12.0 BA44 3042 1951 4914 2.186 0.508 0.140 0.064 49 8.6 BA45 3299 2136 3664 1.661 0.524 0.176 0.097 85 14.8 V1 8331 4795 9858 1.917 0.512 0.161 0.083 185 30.7 V2 1709 1103 2694 2.257 0.537 0.148 0.056 25 3.8 MT 953 641 2574 2.987 0.942 0.163 0.091 23 3.7 perirhinal mris_anatomical_stats -mgz -f ../stats/lh.BA.thresh.stats -b -a ./lh.BA.thresh.annot -c ./BA.thresh.ctab T40_OM_Post lh white computing statistics for each annotation in ./lh.BA.thresh.annot. reading volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white... reading input pial surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.pial... reading input white surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white... INFO: assuming MGZ format for volumes. reading colortable from annotation file... colortable with 14 entries read (originally /cdrom/Marco/freesurfer/average/colortable_BA.txt) Saving annotation colortable ./BA.thresh.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 708 310 831 2.011 0.448 0.172 0.108 27 3.4 BA1 1663 915 2065 2.107 0.500 0.134 0.076 33 5.8 BA2 756 555 652 1.603 0.308 0.195 0.094 16 3.1 BA3a 1344 902 1412 1.497 0.334 0.125 0.045 14 2.9 BA3b 1689 991 2364 2.153 0.768 0.155 0.267 63 11.0 BA4a 900 682 1174 1.819 0.692 0.153 0.062 12 2.6 BA4p 5749 3103 9306 2.569 0.714 0.157 0.184 209 35.9 BA6 1734 1040 2572 2.238 0.541 0.146 0.095 42 8.0 BA44 1277 789 2334 2.320 0.521 0.149 0.083 28 4.9 BA45 3527 2245 3962 1.684 0.526 0.178 0.102 94 16.2 V1 4388 2481 4865 1.851 0.500 0.164 0.090 109 17.7 V2 430 285 644 2.182 0.444 0.156 0.060 6 1.1 MT #-------------------------------------------- #@# BA Labels rh Fri Dec 11 02:57:35 UTC 2015 mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA1.label --trgsubject T40_OM_Post --trglabel ./rh.BA1.label --hemi rh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA1.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA1.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 3962 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3962 nlabel points Performing mapping from target back to the source label 131997 Number of reverse mapping hits = 344 Checking for and removing duplicates Writing label file ./rh.BA1.label 4306 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA2.label --trgsubject T40_OM_Post --trglabel ./rh.BA2.label --hemi rh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA2.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA2.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 6687 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6687 nlabel points Performing mapping from target back to the source label 131997 Number of reverse mapping hits = 354 Checking for and removing duplicates Writing label file ./rh.BA2.label 7041 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA3a.label --trgsubject T40_OM_Post --trglabel ./rh.BA3a.label --hemi rh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA3a.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA3a.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 3980 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3980 nlabel points Performing mapping from target back to the source label 131997 Number of reverse mapping hits = 162 Checking for and removing duplicates Writing label file ./rh.BA3a.label 4142 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA3b.label --trgsubject T40_OM_Post --trglabel ./rh.BA3b.label --hemi rh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA3b.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA3b.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 4522 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4522 nlabel points Performing mapping from target back to the source label 131997 Number of reverse mapping hits = 318 Checking for and removing duplicates Writing label file ./rh.BA3b.label 4840 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA4a.label --trgsubject T40_OM_Post --trglabel ./rh.BA4a.label --hemi rh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA4a.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA4a.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 5747 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5747 nlabel points Performing mapping from target back to the source label 131997 Number of reverse mapping hits = 668 Checking for and removing duplicates Writing label file ./rh.BA4a.label 6415 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA4p.label --trgsubject T40_OM_Post --trglabel ./rh.BA4p.label --hemi rh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA4p.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA4p.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 4473 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4473 nlabel points Performing mapping from target back to the source label 131997 Number of reverse mapping hits = 260 Checking for and removing duplicates Writing label file ./rh.BA4p.label 4733 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA6.label --trgsubject T40_OM_Post --trglabel ./rh.BA6.label --hemi rh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA6.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA6.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 12256 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 12256 nlabel points Performing mapping from target back to the source label 131997 Number of reverse mapping hits = 1542 Checking for and removing duplicates Writing label file ./rh.BA6.label 13798 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA44.label --trgsubject T40_OM_Post --trglabel ./rh.BA44.label --hemi rh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA44.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA44.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 6912 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6912 nlabel points Performing mapping from target back to the source label 131997 Number of reverse mapping hits = 999 Checking for and removing duplicates Writing label file ./rh.BA44.label 7911 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA45.label --trgsubject T40_OM_Post --trglabel ./rh.BA45.label --hemi rh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA45.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA45.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 5355 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5355 nlabel points Performing mapping from target back to the source label 131997 Number of reverse mapping hits = 1005 Checking for and removing duplicates Writing label file ./rh.BA45.label 6360 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.V1.label --trgsubject T40_OM_Post --trglabel ./rh.V1.label --hemi rh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.V1.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.V1.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 4727 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4727 nlabel points Performing mapping from target back to the source label 131997 Number of reverse mapping hits = 1782 Checking for and removing duplicates Writing label file ./rh.V1.label 6509 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.V2.label --trgsubject T40_OM_Post --trglabel ./rh.V2.label --hemi rh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.V2.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.V2.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 8016 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 8016 nlabel points Performing mapping from target back to the source label 131997 Number of reverse mapping hits = 3231 Checking for and removing duplicates Writing label file ./rh.V2.label 11247 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.MT.label --trgsubject T40_OM_Post --trglabel ./rh.MT.label --hemi rh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.MT.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.MT.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 1932 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1932 nlabel points Performing mapping from target back to the source label 131997 Number of reverse mapping hits = 358 Checking for and removing duplicates Writing label file ./rh.MT.label 2290 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.perirhinal.label --trgsubject T40_OM_Post --trglabel ./rh.perirhinal.label --hemi rh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.perirhinal.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.perirhinal.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 752 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 752 nlabel points Performing mapping from target back to the source label 131997 Number of reverse mapping hits = 79 Checking for and removing duplicates Writing label file ./rh.perirhinal.label 831 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA1.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.BA1.thresh.label --hemi rh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA1.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA1.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 876 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 876 nlabel points Performing mapping from target back to the source label 131997 Number of reverse mapping hits = 86 Checking for and removing duplicates Writing label file ./rh.BA1.thresh.label 962 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA2.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.BA2.thresh.label --hemi rh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA2.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA2.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 2688 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2688 nlabel points Performing mapping from target back to the source label 131997 Number of reverse mapping hits = 126 Checking for and removing duplicates Writing label file ./rh.BA2.thresh.label 2814 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA3a.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.BA3a.thresh.label --hemi rh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA3a.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA3a.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 1698 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1698 nlabel points Performing mapping from target back to the source label 131997 Number of reverse mapping hits = 61 Checking for and removing duplicates Writing label file ./rh.BA3a.thresh.label 1759 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA3b.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.BA3b.thresh.label --hemi rh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA3b.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA3b.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 2183 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2183 nlabel points Performing mapping from target back to the source label 131997 Number of reverse mapping hits = 140 Checking for and removing duplicates Writing label file ./rh.BA3b.thresh.label 2323 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA4a.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.BA4a.thresh.label --hemi rh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA4a.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA4a.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 1388 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1388 nlabel points Performing mapping from target back to the source label 131997 Number of reverse mapping hits = 201 Checking for and removing duplicates Writing label file ./rh.BA4a.thresh.label 1589 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA4p.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.BA4p.thresh.label --hemi rh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA4p.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA4p.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 1489 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1489 nlabel points Performing mapping from target back to the source label 131997 Number of reverse mapping hits = 50 Checking for and removing duplicates Writing label file ./rh.BA4p.thresh.label 1539 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA6.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.BA6.thresh.label --hemi rh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA6.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA6.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 6959 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6959 nlabel points Performing mapping from target back to the source label 131997 Number of reverse mapping hits = 741 Checking for and removing duplicates Writing label file ./rh.BA6.thresh.label 7700 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA44.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.BA44.thresh.label --hemi rh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA44.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA44.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 1012 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1012 nlabel points Performing mapping from target back to the source label 131997 Number of reverse mapping hits = 146 Checking for and removing duplicates Writing label file ./rh.BA44.thresh.label 1158 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA45.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.BA45.thresh.label --hemi rh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.BA45.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA45.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 1178 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1178 nlabel points Performing mapping from target back to the source label 131997 Number of reverse mapping hits = 216 Checking for and removing duplicates Writing label file ./rh.BA45.thresh.label 1394 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.V1.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.V1.thresh.label --hemi rh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.V1.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.V1.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 3232 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3232 nlabel points Performing mapping from target back to the source label 131997 Number of reverse mapping hits = 1206 Checking for and removing duplicates Writing label file ./rh.V1.thresh.label 4438 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.V2.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.V2.thresh.label --hemi rh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.V2.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.V2.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 3437 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3437 nlabel points Performing mapping from target back to the source label 131997 Number of reverse mapping hits = 1499 Checking for and removing duplicates Writing label file ./rh.V2.thresh.label 4936 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.MT.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.MT.thresh.label --hemi rh --regmethod surface srclabel = /home/marco/scripts/pipelineT1/subjects/fsaverage/label/rh.MT.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.MT.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects FREESURFER_HOME /cdrom/Marco/freesurfer Loading source label. Found 268 points in source label. Starting surface-based mapping Reading source registration /home/marco/scripts/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 268 nlabel points Performing mapping from target back to the source label 131997 Number of reverse mapping hits = 22 Checking for and removing duplicates Writing label file ./rh.MT.thresh.label 290 mri_label2label: Done mris_label2annot --s T40_OM_Post --hemi rh --ctab /cdrom/Marco/freesurfer/average/colortable_BA.txt --l rh.BA1.label --l rh.BA2.label --l rh.BA3a.label --l rh.BA3b.label --l rh.BA4a.label --l rh.BA4p.label --l rh.BA6.label --l rh.BA44.label --l rh.BA45.label --l rh.V1.label --l rh.V2.label --l rh.MT.label --l rh.perirhinal.label --a BA --maxstatwinner --noverbose Reading ctab /cdrom/Marco/freesurfer/average/colortable_BA.txt Number of ctab entries 14 $Id: mris_label2annot.c,v 1.17 2011/03/02 00:04:32 nicks Exp $ cwd /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/label cmdline mris_label2annot --s T40_OM_Post --hemi rh --ctab /cdrom/Marco/freesurfer/average/colortable_BA.txt --l rh.BA1.label --l rh.BA2.label --l rh.BA3a.label --l rh.BA3b.label --l rh.BA4a.label --l rh.BA4p.label --l rh.BA6.label --l rh.BA44.label --l rh.BA45.label --l rh.V1.label --l rh.V2.label --l rh.MT.label --l rh.perirhinal.label --a BA --maxstatwinner --noverbose sysname Linux hostname ubuntu machine x86_64 user marco subject T40_OM_Post hemi rh SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects ColorTable /cdrom/Marco/freesurfer/average/colortable_BA.txt AnnotName BA nlables 13 LabelThresh 0 0.000000 Loading /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.orig 1 1530880 BA1 2 16749699 BA2 3 16711680 BA3a 4 3368703 BA3b 5 1376196 BA4a 6 13382655 BA4p 7 10036737 BA6 8 2490521 BA44 9 39283 BA45 10 3993 V1 11 8508928 V2 12 10027163 MT 13 16422433 perirhinal Mapping unhit to unknown Found 90099 unhit vertices Writing annot to /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/label/rh.BA.annot mris_label2annot --s T40_OM_Post --hemi rh --ctab /cdrom/Marco/freesurfer/average/colortable_BA.txt --l rh.BA1.thresh.label --l rh.BA2.thresh.label --l rh.BA3a.thresh.label --l rh.BA3b.thresh.label --l rh.BA4a.thresh.label --l rh.BA4p.thresh.label --l rh.BA6.thresh.label --l rh.BA44.thresh.label --l rh.BA45.thresh.label --l rh.V1.thresh.label --l rh.V2.thresh.label --l rh.MT.thresh.label --a BA.thresh --maxstatwinner --noverbose Reading ctab /cdrom/Marco/freesurfer/average/colortable_BA.txt Number of ctab entries 14 $Id: mris_label2annot.c,v 1.17 2011/03/02 00:04:32 nicks Exp $ cwd /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/label cmdline mris_label2annot --s T40_OM_Post --hemi rh --ctab /cdrom/Marco/freesurfer/average/colortable_BA.txt --l rh.BA1.thresh.label --l rh.BA2.thresh.label --l rh.BA3a.thresh.label --l rh.BA3b.thresh.label --l rh.BA4a.thresh.label --l rh.BA4p.thresh.label --l rh.BA6.thresh.label --l rh.BA44.thresh.label --l rh.BA45.thresh.label --l rh.V1.thresh.label --l rh.V2.thresh.label --l rh.MT.thresh.label --a BA.thresh --maxstatwinner --noverbose sysname Linux hostname ubuntu machine x86_64 user marco subject T40_OM_Post hemi rh SUBJECTS_DIR /home/marco/scripts/pipelineT1/subjects ColorTable /cdrom/Marco/freesurfer/average/colortable_BA.txt AnnotName BA.thresh nlables 12 LabelThresh 0 0.000000 Loading /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.orig 1 1530880 BA1 2 16749699 BA2 3 16711680 BA3a 4 3368703 BA3b 5 1376196 BA4a 6 13382655 BA4p 7 10036737 BA6 8 2490521 BA44 9 39283 BA45 10 3993 V1 11 8508928 V2 12 10027163 MT Mapping unhit to unknown Found 108915 unhit vertices Writing annot to /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/label/rh.BA.thresh.annot mris_anatomical_stats -mgz -f ../stats/rh.BA.stats -b -a ./rh.BA.annot -c ./BA.ctab T40_OM_Post rh white computing statistics for each annotation in ./rh.BA.annot. reading volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white... reading input pial surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.pial... reading input white surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white... INFO: assuming MGZ format for volumes. reading colortable from annotation file... colortable with 14 entries read (originally /cdrom/Marco/freesurfer/average/colortable_BA.txt) Saving annotation colortable ./BA.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1047 518 1577 2.270 0.460 0.169 0.247 80 11.0 BA1 3029 1907 3596 1.875 0.475 0.131 0.061 75 8.7 BA2 1067 764 911 1.525 0.324 0.176 0.073 16 3.2 BA3a 2041 1259 2070 1.477 0.436 0.131 0.120 67 4.9 BA3b 1852 1091 2631 2.209 0.725 0.153 0.106 56 10.5 BA4a 1220 876 1569 1.866 0.607 0.170 0.072 18 4.1 BA4p 8519 4841 13180 2.444 0.619 0.164 0.349 1870 76.5 BA6 3928 2575 6073 2.283 0.484 0.143 0.063 62 10.5 BA44 4086 2524 6492 2.166 0.571 0.170 0.124 947 19.4 BA45 4116 2540 4783 1.719 0.583 0.166 0.085 96 13.9 V1 8610 4927 9662 1.855 0.484 0.164 0.125 283 55.6 V2 1767 1162 2707 2.157 0.508 0.141 0.056 22 3.9 MT 616 415 1581 2.981 0.685 0.170 0.090 14 2.1 perirhinal mris_anatomical_stats -mgz -f ../stats/rh.BA.thresh.stats -b -a ./rh.BA.thresh.annot -c ./BA.thresh.ctab T40_OM_Post rh white computing statistics for each annotation in ./rh.BA.thresh.annot. reading volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white... reading input pial surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.pial... reading input white surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white... INFO: assuming MGZ format for volumes. reading colortable from annotation file... colortable with 14 entries read (originally /cdrom/Marco/freesurfer/average/colortable_BA.txt) Saving annotation colortable ./BA.thresh.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 711 349 1029 2.205 0.475 0.178 0.139 45 5.4 BA1 1790 1088 2059 1.824 0.489 0.126 0.050 21 3.9 BA2 956 678 772 1.528 0.327 0.177 0.073 14 2.8 BA3a 1609 1062 1517 1.353 0.327 0.120 0.042 16 2.9 BA3b 1165 662 1622 2.222 0.836 0.162 0.131 46 8.4 BA4a 967 755 1255 1.769 0.605 0.186 0.080 14 3.6 BA4p 5304 3011 8276 2.436 0.650 0.166 0.224 1512 41.7 BA6 845 553 1461 2.310 0.526 0.168 0.091 19 2.7 BA44 1112 685 2174 2.441 0.559 0.161 0.084 25 4.1 BA45 3938 2445 4474 1.698 0.564 0.166 0.085 87 13.0 V1 4471 2563 5023 1.819 0.480 0.174 0.097 110 18.5 V2 214 139 396 2.345 0.517 0.134 0.046 2 0.3 MT /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/label #-------------------------------------------- #@# Ex-vivo Entorhinal Cortex Label lh Fri Dec 11 02:59:50 UTC 2015 mris_spherical_average -erode 1 -orig white -t 0.4 -o T40_OM_Post label lh.entorhinal lh sphere.reg lh.EC_average lh.entorhinal_exvivo.label painting output onto subject T40_OM_Post. processing subject lh.EC_average... reading output surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg... eroding label 1 times before writing thresholding label stat at 0.400 before writing only 1 subject - copying statistics... writing label with 927 points to lh.entorhinal_exvivo.label... mris_anatomical_stats -mgz -f ../stats/lh.entorhinal_exvivo.stats -b -l ./lh.entorhinal_exvivo.label T40_OM_Post lh white limiting computations to label ./lh.entorhinal_exvivo.label. reading volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white... reading input pial surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.pial... reading input white surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/lh.white... INFO: assuming MGZ format for volumes. table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 346 208 883 2.691 0.829 0.156 0.077 8 1.2 ./lh.entorhinal_exvivo.label #-------------------------------------------- #@# Ex-vivo Entorhinal Cortex Label rh Fri Dec 11 02:59:59 UTC 2015 mris_spherical_average -erode 1 -orig white -t 0.4 -o T40_OM_Post label rh.entorhinal rh sphere.reg rh.EC_average rh.entorhinal_exvivo.label painting output onto subject T40_OM_Post. processing subject rh.EC_average... reading output surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg... eroding label 1 times before writing thresholding label stat at 0.400 before writing only 1 subject - copying statistics... writing label with 794 points to rh.entorhinal_exvivo.label... mris_anatomical_stats -mgz -f ../stats/rh.entorhinal_exvivo.stats -b -l ./rh.entorhinal_exvivo.label T40_OM_Post rh white limiting computations to label ./rh.entorhinal_exvivo.label. reading volume /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white... reading input pial surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.pial... reading input white surface /home/marco/scripts/pipelineT1/subjects/T40_OM_Post/surf/rh.white... INFO: assuming MGZ format for volumes. table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 261 161 754 3.075 0.515 0.150 0.080 5 1.0 ./rh.entorhinal_exvivo.label #------------------------------------------ Started at Thu Dec 10 19:18:50 UTC 2015 Ended at Fri Dec 11 03:00:07 UTC 2015 #@#%# recon-all-run-time-hours 7.688 recon-all -s T40_OM_Post finished without error at Fri Dec 11 03:00:07 UTC 2015 \n\n New invocation of recon-all \n\n Tue Dec 15 02:16:56 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post /Applications/freesurfer/bin/recon-all -sd /Users/marco/Documents/T1s/pipelineT1/subjects -s T40_OM_Post -localGI subjid T40_OM_Post setenv SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Actual FREESURFER_HOME /Applications/freesurfer build-stamp.txt: freesurfer-Darwin-lion-stable-pub-v5.3.0 Darwin MacBook-Pro-di-Marco.local 13.3.0 Darwin Kernel Version 13.3.0: Tue Jun 3 21:27:35 PDT 2014; root:xnu-2422.110.17~1/RELEASE_X86_64 x86_64 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 709 PhysMem: 5946M used (1406M wired), 1681M unused. ######################################## program versions used $Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 nicks Exp $ $Id: mri_motion_correct.fsl,v 1.14 2011/03/02 20:16:39 nicks Exp $ mri_convert -all-info ProgramName: mri_convert ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:57-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 FLIRT version 5.5 $Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks Exp $ mri_convert --version stable5 ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:57-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 Program nu_correct, built from: Package MNI N3, version 1.10, compiled by nicks@aspasia.local (i686-apple-darwin10.2.0) on 2010-02-26 at 14:19:30 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_normalize.c,v 1.73.2.1 2012/10/17 19:11:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_watershed.cpp,v 1.96.2.1 2011/11/08 22:18:44 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_segment.c,v 1.40 2011/03/02 00:04:24 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_label2label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_label2label.c,v 1.40.2.2 2013/04/02 16:26:15 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_em_register.c,v 1.84.2.3 2013/02/09 00:49:26 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_normalize.c,v 1.52.2.2 2012/10/17 19:11:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_register.c,v 1.78.2.3 2013/02/09 00:42:20 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_label.c,v 1.96.2.1 2012/08/28 22:11:20 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_pretess.c,v 1.20 2011/03/02 00:04:23 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_fill.c,v 1.118 2011/03/16 21:23:49 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_concatenate_lta ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_concatenate_lta.c,v 1.10 2011/03/16 21:23:48 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_smooth.c,v 1.28 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_inflate.c,v 1.43 2011/03/02 00:04:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_euler_number.c,v 1.8.2.2 2013/01/14 22:40:07 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_volmask.cpp,v 1.25 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_anatomical_stats.c,v 1.72 2011/03/02 00:04:26 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mrisp_paint.c,v 1.11 2011/03/02 00:04:35 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_curvature_stats.c,v 1.64 2011/03/02 00:04:30 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_calc.c,v 1.37.2.8 2013/01/28 17:05:17 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ ProgramName: mri_robust_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_or.c,v 1.3 2011/03/02 00:04:13 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-00:16:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ####################################### GCADIR /Applications/freesurfer/average GCA RB_all_2008-03-26.gca GCASkull RB_all_withskull_2008-03-26.gca AvgCurvTif average.curvature.filled.buckner40.tif GCSDIR /Applications/freesurfer/average GCS curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ####################################### INFO: current FREESURFER_HOME does not match that of previous processing. Current: /Applications/freesurfer Previous: /cdrom/Marco/freesurfer /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf #-------------------------------------------- #@# Local Gyrification Index lh Tue Dec 15 02:16:59 EET 2015 \n mris_compute_lgi --i lh.pial \n ================= rm -Rf /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial ================= ================= mkdir -p /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial ================= ================= mris_fill -c -r 1 lh.pial /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz ================= reading surface from lh.pial... writing filled volume to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz... conforming output volume setting resolution for intermediate calculations to 1.0000 ================= make_outer_surface('/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz',15,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer'); exit ================= 2015-12-15 02:17:04.858 MATLAB_maci64[27668:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> reading filled volume... closing volume... morphological closing done. writing outer surface... ================= mris_extract_main_component /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-main ================= counting number of connected components... 63138 voxel in cpt #1: X=2 [v=63138,e=189408,f=126272] located at (-22.526979, -18.777306, 3.486268) For the whole surface: X=2 [v=63138,e=189408,f=126272] One single component has been found nothing to do done ================= mris_smooth -nw -n 30 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-main ./lh.pial-outer-smoothed ================= smoothing for 30 iterations smoothing surface tessellation for 30 iterations... smoothing complete - recomputing first and second fundamental forms... ================= mris_euler_number ./lh.pial-outer-smoothed ================= euler # = v-e+f = 2g-2: 63138 - 189408 + 126272 = 2 --> 0 holes F =2V-4: 126272 = 126276-4 (0) 2E=3F: 378816 = 378816 (0) total defect index = 0 ================= mris_convert -n lh.pial-outer-smoothed /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc ================= ================= find_corresponding_center_FSformat('lh.pial','lh.pial-outer-smoothed',100,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial','/tmp/mrc_27652_.m'); exit ================= 2015-12-15 02:17:29.885 MATLAB_maci64[27732:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.06 sec) FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.02 sec) deltaT = 4.2000 ================= make_roi_paths('lh.pial','lh.pial-outer-smoothed',25,100,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial','/tmp/mrp_27652_.m'); exit ================= 2015-12-15 02:17:34.766 MATLAB_maci64[27786:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> loading datas ... FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.02 sec) FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.02 sec) preparing outer mesh structure ... face 5000 / 126272 face 10000 / 126272 face 15000 / 126272 face 20000 / 126272 face 25000 / 126272 face 30000 / 126272 face 35000 / 126272 face 40000 / 126272 face 45000 / 126272 face 50000 / 126272 face 55000 / 126272 face 60000 / 126272 face 65000 / 126272 face 70000 / 126272 face 75000 / 126272 face 80000 / 126272 face 85000 / 126272 face 90000 / 126272 face 95000 / 126272 face 100000 / 126272 face 105000 / 126272 face 110000 / 126272 face 115000 / 126272 face 120000 / 126272 face 125000 / 126272 mesh_outer = vertices: [63138x3 double] faces: [126272x3 double] facesOfVertex: [63138x1 struct] preparing pial mesh structure ... ...searching for mesh edges...done (186.58 sec). ... creating path file for vertex 1 / 63138 area file for outer ROIs saved at 1 ... creating path file for vertex 101 / 63138 ... creating path file for vertex 201 / 63138 ... creating path file for vertex 301 / 63138 ... creating path file for vertex 401 / 63138 ... creating path file for vertex 501 / 63138 ... creating path file for vertex 601 / 63138 ... creating path file for vertex 701 / 63138 ... creating path file for vertex 801 / 63138 ... creating path file for vertex 901 / 63138 ... creating path file for vertex 1001 / 63138 ... creating path file for vertex 1101 / 63138 ... creating path file for vertex 1201 / 63138 ... creating path file for vertex 1301 / 63138 ... creating path file for vertex 1401 / 63138 ... creating path file for vertex 1501 / 63138 ... creating path file for vertex 1601 / 63138 ... creating path file for vertex 1701 / 63138 ... creating path file for vertex 1801 / 63138 ... creating path file for vertex 1901 / 63138 ... creating path file for vertex 2001 / 63138 ... creating path file for vertex 2101 / 63138 ... creating path file for vertex 2201 / 63138 ... creating path file for vertex 2301 / 63138 ... creating path file for vertex 2401 / 63138 ... creating path file for vertex 2501 / 63138 ... creating path file for vertex 2601 / 63138 ... creating path file for vertex 2701 / 63138 ... creating path file for vertex 2801 / 63138 ... creating path file for vertex 2901 / 63138 ... creating path file for vertex 3001 / 63138 ... creating path file for vertex 3101 / 63138 ... creating path file for vertex 3201 / 63138 ... creating path file for vertex 3301 / 63138 ... creating path file for vertex 3401 / 63138 ... creating path file for vertex 3501 / 63138 ... creating path file for vertex 3601 / 63138 ... creating path file for vertex 3701 / 63138 ... creating path file for vertex 3801 / 63138 ... creating path file for vertex 3901 / 63138 ... creating path file for vertex 4001 / 63138 ... creating path file for vertex 4101 / 63138 ... creating path file for vertex 4201 / 63138 ... creating path file for vertex 4301 / 63138 ... creating path file for vertex 4401 / 63138 ... creating path file for vertex 4501 / 63138 ... creating path file for vertex 4601 / 63138 ... creating path file for vertex 4701 / 63138 ... creating path file for vertex 4801 / 63138 ... creating path file for vertex 4901 / 63138 ... creating path file for vertex 5001 / 63138 area file for outer ROIs saved at 5001 ... creating path file for vertex 5101 / 63138 ... creating path file for vertex 5201 / 63138 ... creating path file for vertex 5301 / 63138 ... creating path file for vertex 5401 / 63138 ... creating path file for vertex 5501 / 63138 ... creating path file for vertex 5601 / 63138 ... creating path file for vertex 5701 / 63138 ... creating path file for vertex 5801 / 63138 ... creating path file for vertex 5901 / 63138 ... creating path file for vertex 6001 / 63138 ... creating path file for vertex 6101 / 63138 ... creating path file for vertex 6201 / 63138 ... creating path file for vertex 6301 / 63138 ... creating path file for vertex 6401 / 63138 ... creating path file for vertex 6501 / 63138 ... creating path file for vertex 6601 / 63138 ... creating path file for vertex 6701 / 63138 ... creating path file for vertex 6801 / 63138 ... creating path file for vertex 6901 / 63138 ... creating path file for vertex 7001 / 63138 ... creating path file for vertex 7101 / 63138 ... creating path file for vertex 7201 / 63138 ... creating path file for vertex 7301 / 63138 ... creating path file for vertex 7401 / 63138 ... creating path file for vertex 7501 / 63138 ... creating path file for vertex 7601 / 63138 ... creating path file for vertex 7701 / 63138 ... creating path file for vertex 7801 / 63138 ... creating path file for vertex 7901 / 63138 ... creating path file for vertex 8001 / 63138 ... creating path file for vertex 8101 / 63138 ... creating path file for vertex 8201 / 63138 ... creating path file for vertex 8301 / 63138 ... creating path file for vertex 8401 / 63138 ... creating path file for vertex 8501 / 63138 ... creating path file for vertex 8601 / 63138 ... creating path file for vertex 8701 / 63138 ... creating path file for vertex 8801 / 63138 ... creating path file for vertex 8901 / 63138 ... creating path file for vertex 9001 / 63138 ... creating path file for vertex 9101 / 63138 ... creating path file for vertex 9201 / 63138 ... creating path file for vertex 9301 / 63138 ... creating path file for vertex 9401 / 63138 ... creating path file for vertex 9501 / 63138 ... creating path file for vertex 9601 / 63138 ... creating path file for vertex 9701 / 63138 ... creating path file for vertex 9801 / 63138 ... creating path file for vertex 9901 / 63138 ... creating path file for vertex 10001 / 63138 area file for outer ROIs saved at 10001 ... creating path file for vertex 10101 / 63138 ... creating path file for vertex 10201 / 63138 ... creating path file for vertex 10301 / 63138 ... creating path file for vertex 10401 / 63138 ... creating path file for vertex 10501 / 63138 ... creating path file for vertex 10601 / 63138 ... creating path file for vertex 10701 / 63138 ... creating path file for vertex 10801 / 63138 ... creating path file for vertex 10901 / 63138 ... creating path file for vertex 11001 / 63138 ... creating path file for vertex 11101 / 63138 ... creating path file for vertex 11201 / 63138 ... creating path file for vertex 11301 / 63138 ... creating path file for vertex 11401 / 63138 ... creating path file for vertex 11501 / 63138 ... creating path file for vertex 11601 / 63138 ... creating path file for vertex 11701 / 63138 ... creating path file for vertex 11801 / 63138 ... creating path file for vertex 11901 / 63138 ... creating path file for vertex 12001 / 63138 ... creating path file for vertex 12101 / 63138 ... creating path file for vertex 12201 / 63138 ... creating path file for vertex 12301 / 63138 ... creating path file for vertex 12401 / 63138 ... creating path file for vertex 12501 / 63138 ... creating path file for vertex 12601 / 63138 ... creating path file for vertex 12701 / 63138 ... creating path file for vertex 12801 / 63138 ... creating path file for vertex 12901 / 63138 ... creating path file for vertex 13001 / 63138 ... creating path file for vertex 13101 / 63138 ... creating path file for vertex 13201 / 63138 ... creating path file for vertex 13301 / 63138 ... creating path file for vertex 13401 / 63138 ... creating path file for vertex 13501 / 63138 ... creating path file for vertex 13601 / 63138 ... creating path file for vertex 13701 / 63138 ... creating path file for vertex 13801 / 63138 ... creating path file for vertex 13901 / 63138 ... creating path file for vertex 14001 / 63138 ... creating path file for vertex 14101 / 63138 ... creating path file for vertex 14201 / 63138 ... creating path file for vertex 14301 / 63138 ... creating path file for vertex 14401 / 63138 ... creating path file for vertex 14501 / 63138 ... creating path file for vertex 14601 / 63138 ... creating path file for vertex 14701 / 63138 ... creating path file for vertex 14801 / 63138 ... creating path file for vertex 14901 / 63138 ... creating path file for vertex 15001 / 63138 area file for outer ROIs saved at 15001 ... creating path file for vertex 15101 / 63138 ... creating path file for vertex 15201 / 63138 ... creating path file for vertex 15301 / 63138 ... creating path file for vertex 15401 / 63138 ... creating path file for vertex 15501 / 63138 ... creating path file for vertex 15601 / 63138 ... creating path file for vertex 15701 / 63138 ... creating path file for vertex 15801 / 63138 ... creating path file for vertex 15901 / 63138 ... creating path file for vertex 16001 / 63138 ... creating path file for vertex 16101 / 63138 ... creating path file for vertex 16201 / 63138 ... creating path file for vertex 16301 / 63138 ... creating path file for vertex 16401 / 63138 ... creating path file for vertex 16501 / 63138 ... creating path file for vertex 16601 / 63138 ... creating path file for vertex 16701 / 63138 ... creating path file for vertex 16801 / 63138 ... creating path file for vertex 16901 / 63138 ... creating path file for vertex 17001 / 63138 ... creating path file for vertex 17101 / 63138 ... creating path file for vertex 17201 / 63138 ... creating path file for vertex 17301 / 63138 ... creating path file for vertex 17401 / 63138 ... creating path file for vertex 17501 / 63138 ... creating path file for vertex 17601 / 63138 ... creating path file for vertex 17701 / 63138 ... creating path file for vertex 17801 / 63138 ... creating path file for vertex 17901 / 63138 ... creating path file for vertex 18001 / 63138 ... creating path file for vertex 18101 / 63138 ... creating path file for vertex 18201 / 63138 ... creating path file for vertex 18301 / 63138 ... creating path file for vertex 18401 / 63138 ... creating path file for vertex 18501 / 63138 ... creating path file for vertex 18601 / 63138 ... creating path file for vertex 18701 / 63138 ... creating path file for vertex 18801 / 63138 ... creating path file for vertex 18901 / 63138 ... creating path file for vertex 19001 / 63138 ... creating path file for vertex 19101 / 63138 ... creating path file for vertex 19201 / 63138 ... creating path file for vertex 19301 / 63138 ... creating path file for vertex 19401 / 63138 ... creating path file for vertex 19501 / 63138 ... creating path file for vertex 19601 / 63138 ... creating path file for vertex 19701 / 63138 ... creating path file for vertex 19801 / 63138 ... creating path file for vertex 19901 / 63138 ... creating path file for vertex 20001 / 63138 area file for outer ROIs saved at 20001 ... creating path file for vertex 20101 / 63138 ... creating path file for vertex 20201 / 63138 ... creating path file for vertex 20301 / 63138 ... creating path file for vertex 20401 / 63138 ... creating path file for vertex 20501 / 63138 ... creating path file for vertex 20601 / 63138 ... creating path file for vertex 20701 / 63138 ... creating path file for vertex 20801 / 63138 ... creating path file for vertex 20901 / 63138 ... creating path file for vertex 21001 / 63138 ... creating path file for vertex 21101 / 63138 ... creating path file for vertex 21201 / 63138 ... creating path file for vertex 21301 / 63138 ... creating path file for vertex 21401 / 63138 ... creating path file for vertex 21501 / 63138 ... creating path file for vertex 21601 / 63138 ... creating path file for vertex 21701 / 63138 ... creating path file for vertex 21801 / 63138 ... creating path file for vertex 21901 / 63138 ... creating path file for vertex 22001 / 63138 ... creating path file for vertex 22101 / 63138 ... creating path file for vertex 22201 / 63138 ... creating path file for vertex 22301 / 63138 ... creating path file for vertex 22401 / 63138 ... creating path file for vertex 22501 / 63138 ... creating path file for vertex 22601 / 63138 ... creating path file for vertex 22701 / 63138 ... creating path file for vertex 22801 / 63138 ... creating path file for vertex 22901 / 63138 ... creating path file for vertex 23001 / 63138 ... creating path file for vertex 23101 / 63138 ... creating path file for vertex 23201 / 63138 ... creating path file for vertex 23301 / 63138 ... creating path file for vertex 23401 / 63138 ... creating path file for vertex 23501 / 63138 ... creating path file for vertex 23601 / 63138 ... creating path file for vertex 23701 / 63138 ... creating path file for vertex 23801 / 63138 ... creating path file for vertex 23901 / 63138 ... creating path file for vertex 24001 / 63138 ... creating path file for vertex 24101 / 63138 ... creating path file for vertex 24201 / 63138 ... creating path file for vertex 24301 / 63138 ... creating path file for vertex 24401 / 63138 ... creating path file for vertex 24501 / 63138 ... creating path file for vertex 24601 / 63138 ... creating path file for vertex 24701 / 63138 ... creating path file for vertex 24801 / 63138 ... creating path file for vertex 24901 / 63138 ... creating path file for vertex 25001 / 63138 area file for outer ROIs saved at 25001 ... creating path file for vertex 25101 / 63138 ... creating path file for vertex 25201 / 63138 ... creating path file for vertex 25301 / 63138 ... creating path file for vertex 25401 / 63138 ... creating path file for vertex 25501 / 63138 ... creating path file for vertex 25601 / 63138 ... creating path file for vertex 25701 / 63138 ... creating path file for vertex 25801 / 63138 ... creating path file for vertex 25901 / 63138 ... creating path file for vertex 26001 / 63138 ... creating path file for vertex 26101 / 63138 ... creating path file for vertex 26201 / 63138 ... creating path file for vertex 26301 / 63138 ... creating path file for vertex 26401 / 63138 ... creating path file for vertex 26501 / 63138 ... creating path file for vertex 26601 / 63138 ... creating path file for vertex 26701 / 63138 ... creating path file for vertex 26801 / 63138 ... creating path file for vertex 26901 / 63138 ... creating path file for vertex 27001 / 63138 ... creating path file for vertex 27101 / 63138 ... creating path file for vertex 27201 / 63138 ... creating path file for vertex 27301 / 63138 ... creating path file for vertex 27401 / 63138 ... creating path file for vertex 27501 / 63138 ... creating path file for vertex 27601 / 63138 ... creating path file for vertex 27701 / 63138 ... creating path file for vertex 27801 / 63138 ... creating path file for vertex 27901 / 63138 ... creating path file for vertex 28001 / 63138 ... creating path file for vertex 28101 / 63138 ... creating path file for vertex 28201 / 63138 ... creating path file for vertex 28301 / 63138 ... creating path file for vertex 28401 / 63138 ... creating path file for vertex 28501 / 63138 ... creating path file for vertex 28601 / 63138 ... creating path file for vertex 28701 / 63138 ... creating path file for vertex 28801 / 63138 ... creating path file for vertex 28901 / 63138 ... creating path file for vertex 29001 / 63138 ... creating path file for vertex 29101 / 63138 ... creating path file for vertex 29201 / 63138 ... creating path file for vertex 29301 / 63138 ... creating path file for vertex 29401 / 63138 ... creating path file for vertex 29501 / 63138 ... creating path file for vertex 29601 / 63138 ... creating path file for vertex 29701 / 63138 ... creating path file for vertex 29801 / 63138 ... creating path file for vertex 29901 / 63138 ... creating path file for vertex 30001 / 63138 area file for outer ROIs saved at 30001 ... creating path file for vertex 30101 / 63138 ... creating path file for vertex 30201 / 63138 ... creating path file for vertex 30301 / 63138 ... creating path file for vertex 30401 / 63138 ... creating path file for vertex 30501 / 63138 ... creating path file for vertex 30601 / 63138 ... creating path file for vertex 30701 / 63138 ... creating path file for vertex 30801 / 63138 ... creating path file for vertex 30901 / 63138 ... creating path file for vertex 31001 / 63138 ... creating path file for vertex 31101 / 63138 ... creating path file for vertex 31201 / 63138 ... creating path file for vertex 31301 / 63138 ... creating path file for vertex 31401 / 63138 ... creating path file for vertex 31501 / 63138 ... creating path file for vertex 31601 / 63138 ... creating path file for vertex 31701 / 63138 ... creating path file for vertex 31801 / 63138 ... creating path file for vertex 31901 / 63138 ... creating path file for vertex 32001 / 63138 ... creating path file for vertex 32101 / 63138 ... creating path file for vertex 32201 / 63138 ... creating path file for vertex 32301 / 63138 ... creating path file for vertex 32401 / 63138 ... creating path file for vertex 32501 / 63138 ... creating path file for vertex 32601 / 63138 ... creating path file for vertex 32701 / 63138 ... creating path file for vertex 32801 / 63138 ... creating path file for vertex 32901 / 63138 ... creating path file for vertex 33001 / 63138 ... creating path file for vertex 33101 / 63138 ... creating path file for vertex 33201 / 63138 ... creating path file for vertex 33301 / 63138 ... creating path file for vertex 33401 / 63138 ... creating path file for vertex 33501 / 63138 ... creating path file for vertex 33601 / 63138 ... creating path file for vertex 33701 / 63138 ... creating path file for vertex 33801 / 63138 ... creating path file for vertex 33901 / 63138 ... creating path file for vertex 34001 / 63138 ... creating path file for vertex 34101 / 63138 ... creating path file for vertex 34201 / 63138 ... creating path file for vertex 34301 / 63138 ... creating path file for vertex 34401 / 63138 ... creating path file for vertex 34501 / 63138 ... creating path file for vertex 34601 / 63138 ... creating path file for vertex 34701 / 63138 ... creating path file for vertex 34801 / 63138 ... creating path file for vertex 34901 / 63138 ... creating path file for vertex 35001 / 63138 area file for outer ROIs saved at 35001 ... creating path file for vertex 35101 / 63138 ... creating path file for vertex 35201 / 63138 ... creating path file for vertex 35301 / 63138 ... creating path file for vertex 35401 / 63138 ... creating path file for vertex 35501 / 63138 ... creating path file for vertex 35601 / 63138 ... creating path file for vertex 35701 / 63138 ... creating path file for vertex 35801 / 63138 ... creating path file for vertex 35901 / 63138 ... creating path file for vertex 36001 / 63138 ... creating path file for vertex 36101 / 63138 ... creating path file for vertex 36201 / 63138 ... creating path file for vertex 36301 / 63138 ... creating path file for vertex 36401 / 63138 ... creating path file for vertex 36501 / 63138 ... creating path file for vertex 36601 / 63138 ... creating path file for vertex 36701 / 63138 ... creating path file for vertex 36801 / 63138 ... creating path file for vertex 36901 / 63138 ... creating path file for vertex 37001 / 63138 ... creating path file for vertex 37101 / 63138 ... creating path file for vertex 37201 / 63138 ... creating path file for vertex 37301 / 63138 ... creating path file for vertex 37401 / 63138 ... creating path file for vertex 37501 / 63138 ... creating path file for vertex 37601 / 63138 ... creating path file for vertex 37701 / 63138 ... creating path file for vertex 37801 / 63138 ... creating path file for vertex 37901 / 63138 ... creating path file for vertex 38001 / 63138 ... creating path file for vertex 38101 / 63138 ... creating path file for vertex 38201 / 63138 ... creating path file for vertex 38301 / 63138 ... creating path file for vertex 38401 / 63138 ... creating path file for vertex 38501 / 63138 ... creating path file for vertex 38601 / 63138 ... creating path file for vertex 38701 / 63138 ... creating path file for vertex 38801 / 63138 ... creating path file for vertex 38901 / 63138 ... creating path file for vertex 39001 / 63138 ... creating path file for vertex 39101 / 63138 ... creating path file for vertex 39201 / 63138 ... creating path file for vertex 39301 / 63138 ... creating path file for vertex 39401 / 63138 ... creating path file for vertex 39501 / 63138 ... creating path file for vertex 39601 / 63138 ... creating path file for vertex 39701 / 63138 ... creating path file for vertex 39801 / 63138 ... creating path file for vertex 39901 / 63138 ... creating path file for vertex 40001 / 63138 area file for outer ROIs saved at 40001 ... creating path file for vertex 40101 / 63138 ... creating path file for vertex 40201 / 63138 ... creating path file for vertex 40301 / 63138 ... creating path file for vertex 40401 / 63138 ... creating path file for vertex 40501 / 63138 ... creating path file for vertex 40601 / 63138 ... creating path file for vertex 40701 / 63138 ... creating path file for vertex 40801 / 63138 ... creating path file for vertex 40901 / 63138 ... creating path file for vertex 41001 / 63138 ... creating path file for vertex 41101 / 63138 ... creating path file for vertex 41201 / 63138 ... creating path file for vertex 41301 / 63138 ... creating path file for vertex 41401 / 63138 ... creating path file for vertex 41501 / 63138 ... creating path file for vertex 41601 / 63138 ... creating path file for vertex 41701 / 63138 ... creating path file for vertex 41801 / 63138 ... creating path file for vertex 41901 / 63138 ... creating path file for vertex 42001 / 63138 ... creating path file for vertex 42101 / 63138 ... creating path file for vertex 42201 / 63138 ... creating path file for vertex 42301 / 63138 ... creating path file for vertex 42401 / 63138 ... creating path file for vertex 42501 / 63138 ... creating path file for vertex 42601 / 63138 ... creating path file for vertex 42701 / 63138 ... creating path file for vertex 42801 / 63138 ... creating path file for vertex 42901 / 63138 ... creating path file for vertex 43001 / 63138 ... creating path file for vertex 43101 / 63138 ... creating path file for vertex 43201 / 63138 ... creating path file for vertex 43301 / 63138 ... creating path file for vertex 43401 / 63138 ... creating path file for vertex 43501 / 63138 ... creating path file for vertex 43601 / 63138 ... creating path file for vertex 43701 / 63138 ... creating path file for vertex 43801 / 63138 ... creating path file for vertex 43901 / 63138 ... creating path file for vertex 44001 / 63138 ... creating path file for vertex 44101 / 63138 ... creating path file for vertex 44201 / 63138 ... creating path file for vertex 44301 / 63138 ... creating path file for vertex 44401 / 63138 ... creating path file for vertex 44501 / 63138 ... creating path file for vertex 44601 / 63138 ... creating path file for vertex 44701 / 63138 ... creating path file for vertex 44801 / 63138 ... creating path file for vertex 44901 / 63138 ... creating path file for vertex 45001 / 63138 area file for outer ROIs saved at 45001 ... creating path file for vertex 45101 / 63138 ... creating path file for vertex 45201 / 63138 ... creating path file for vertex 45301 / 63138 ... creating path file for vertex 45401 / 63138 ... creating path file for vertex 45501 / 63138 ... creating path file for vertex 45601 / 63138 ... creating path file for vertex 45701 / 63138 ... creating path file for vertex 45801 / 63138 ... creating path file for vertex 45901 / 63138 ... creating path file for vertex 46001 / 63138 ... creating path file for vertex 46101 / 63138 ... creating path file for vertex 46201 / 63138 ... creating path file for vertex 46301 / 63138 ... creating path file for vertex 46401 / 63138 ... creating path file for vertex 46501 / 63138 ... creating path file for vertex 46601 / 63138 ... creating path file for vertex 46701 / 63138 ... creating path file for vertex 46801 / 63138 ... creating path file for vertex 46901 / 63138 ... creating path file for vertex 47001 / 63138 ... creating path file for vertex 47101 / 63138 ... creating path file for vertex 47201 / 63138 ... creating path file for vertex 47301 / 63138 ... creating path file for vertex 47401 / 63138 ... creating path file for vertex 47501 / 63138 ... creating path file for vertex 47601 / 63138 ... creating path file for vertex 47701 / 63138 ... creating path file for vertex 47801 / 63138 ... creating path file for vertex 47901 / 63138 ... creating path file for vertex 48001 / 63138 ... creating path file for vertex 48101 / 63138 ... creating path file for vertex 48201 / 63138 ... creating path file for vertex 48301 / 63138 ... creating path file for vertex 48401 / 63138 ... creating path file for vertex 48501 / 63138 ... creating path file for vertex 48601 / 63138 ... creating path file for vertex 48701 / 63138 ... creating path file for vertex 48801 / 63138 ... creating path file for vertex 48901 / 63138 ... creating path file for vertex 49001 / 63138 ... creating path file for vertex 49101 / 63138 ... creating path file for vertex 49201 / 63138 non geodesic regions removed from the patch ... creating path file for vertex 49301 / 63138 ... creating path file for vertex 49401 / 63138 ... creating path file for vertex 49501 / 63138 ... creating path file for vertex 49601 / 63138 ... creating path file for vertex 49701 / 63138 ... creating path file for vertex 49801 / 63138 ... creating path file for vertex 49901 / 63138 ... creating path file for vertex 50001 / 63138 area file for outer ROIs saved at 50001 ... creating path file for vertex 50101 / 63138 ... creating path file for vertex 50201 / 63138 ... creating path file for vertex 50301 / 63138 ... creating path file for vertex 50401 / 63138 ... creating path file for vertex 50501 / 63138 ... creating path file for vertex 50601 / 63138 ... creating path file for vertex 50701 / 63138 ... creating path file for vertex 50801 / 63138 ... creating path file for vertex 50901 / 63138 ... creating path file for vertex 51001 / 63138 ... creating path file for vertex 51101 / 63138 ... creating path file for vertex 51201 / 63138 ... creating path file for vertex 51301 / 63138 ... creating path file for vertex 51401 / 63138 non geodesic regions removed from the patch ... creating path file for vertex 51501 / 63138 ... creating path file for vertex 51601 / 63138 ... creating path file for vertex 51701 / 63138 ... creating path file for vertex 51801 / 63138 ... creating path file for vertex 51901 / 63138 ... creating path file for vertex 52001 / 63138 ... creating path file for vertex 52101 / 63138 ... creating path file for vertex 52201 / 63138 ... creating path file for vertex 52301 / 63138 ... creating path file for vertex 52401 / 63138 ... creating path file for vertex 52501 / 63138 ... creating path file for vertex 52601 / 63138 ... creating path file for vertex 52701 / 63138 ... creating path file for vertex 52801 / 63138 ... creating path file for vertex 52901 / 63138 ... creating path file for vertex 53001 / 63138 ... creating path file for vertex 53101 / 63138 ... creating path file for vertex 53201 / 63138 ... creating path file for vertex 53301 / 63138 ... creating path file for vertex 53401 / 63138 ... creating path file for vertex 53501 / 63138 ... creating path file for vertex 53601 / 63138 ... creating path file for vertex 53701 / 63138 ... creating path file for vertex 53801 / 63138 ... creating path file for vertex 53901 / 63138 ... creating path file for vertex 54001 / 63138 ... creating path file for vertex 54101 / 63138 ... creating path file for vertex 54201 / 63138 ... creating path file for vertex 54301 / 63138 ... creating path file for vertex 54401 / 63138 ... creating path file for vertex 54501 / 63138 ... creating path file for vertex 54601 / 63138 ... creating path file for vertex 54701 / 63138 ... creating path file for vertex 54801 / 63138 ... creating path file for vertex 54901 / 63138 ... creating path file for vertex 55001 / 63138 area file for outer ROIs saved at 55001 ... creating path file for vertex 55101 / 63138 ... creating path file for vertex 55201 / 63138 ... creating path file for vertex 55301 / 63138 ... creating path file for vertex 55401 / 63138 ... creating path file for vertex 55501 / 63138 ... creating path file for vertex 55601 / 63138 ... creating path file for vertex 55701 / 63138 ... creating path file for vertex 55801 / 63138 ... creating path file for vertex 55901 / 63138 ... creating path file for vertex 56001 / 63138 ... creating path file for vertex 56101 / 63138 ... creating path file for vertex 56201 / 63138 ... creating path file for vertex 56301 / 63138 ... creating path file for vertex 56401 / 63138 ... creating path file for vertex 56501 / 63138 ... creating path file for vertex 56601 / 63138 ... creating path file for vertex 56701 / 63138 ... creating path file for vertex 56801 / 63138 ... creating path file for vertex 56901 / 63138 ... creating path file for vertex 57001 / 63138 ... creating path file for vertex 57101 / 63138 ... creating path file for vertex 57201 / 63138 ... creating path file for vertex 57301 / 63138 ... creating path file for vertex 57401 / 63138 ... creating path file for vertex 57501 / 63138 ... creating path file for vertex 57601 / 63138 ... creating path file for vertex 57701 / 63138 ... creating path file for vertex 57801 / 63138 ... creating path file for vertex 57901 / 63138 ... creating path file for vertex 58001 / 63138 ... creating path file for vertex 58101 / 63138 ... creating path file for vertex 58201 / 63138 ... creating path file for vertex 58301 / 63138 ... creating path file for vertex 58401 / 63138 ... creating path file for vertex 58501 / 63138 ... creating path file for vertex 58601 / 63138 ... creating path file for vertex 58701 / 63138 ... creating path file for vertex 58801 / 63138 ... creating path file for vertex 58901 / 63138 ... creating path file for vertex 59001 / 63138 ... creating path file for vertex 59101 / 63138 ... creating path file for vertex 59201 / 63138 ... creating path file for vertex 59301 / 63138 ... creating path file for vertex 59401 / 63138 ... creating path file for vertex 59501 / 63138 ... creating path file for vertex 59601 / 63138 ... creating path file for vertex 59701 / 63138 ... creating path file for vertex 59801 / 63138 ... creating path file for vertex 59901 / 63138 ... creating path file for vertex 60001 / 63138 area file for outer ROIs saved at 60001 ... creating path file for vertex 60101 / 63138 ... creating path file for vertex 60201 / 63138 ... creating path file for vertex 60301 / 63138 ... creating path file for vertex 60401 / 63138 ... creating path file for vertex 60501 / 63138 ... creating path file for vertex 60601 / 63138 ... creating path file for vertex 60701 / 63138 ... creating path file for vertex 60801 / 63138 ... creating path file for vertex 60901 / 63138 ... creating path file for vertex 61001 / 63138 ... creating path file for vertex 61101 / 63138 ... creating path file for vertex 61201 / 63138 ... creating path file for vertex 61301 / 63138 ... creating path file for vertex 61401 / 63138 ... creating path file for vertex 61501 / 63138 ... creating path file for vertex 61601 / 63138 ... creating path file for vertex 61701 / 63138 ... creating path file for vertex 61801 / 63138 ... creating path file for vertex 61901 / 63138 ... creating path file for vertex 62001 / 63138 ... creating path file for vertex 62101 / 63138 ... creating path file for vertex 62201 / 63138 ... creating path file for vertex 62301 / 63138 ... creating path file for vertex 62401 / 63138 ... creating path file for vertex 62501 / 63138 ... creating path file for vertex 62601 / 63138 ... creating path file for vertex 62701 / 63138 ... creating path file for vertex 62801 / 63138 ... creating path file for vertex 62901 / 63138 ... creating path file for vertex 63001 / 63138 ... creating path file for vertex 63101 / 63138 saving area file in matlab format... DONE. deltaT = 881.6400 ================= mri_path2label --confillxfn lh.pial /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/mri_path2label.input ================= Reading lh.pial Connecting and filling vertices in path at fillseed 112 Finding path............................................................................................................................................................................................................ done Filling 112 nlabel 6226 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000001.label Connecting and filling vertices in path at fillseed 52 Finding path............................................................................................................................................................. done Filling 52 nlabel 6328 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000101.label Connecting and filling vertices in path at fillseed 218 Finding path...................................................................................................................................................... done Filling 218 nlabel 5798 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000201.label Connecting and filling vertices in path at fillseed 104 Finding path........................................................................................................................................................................................................................... done Filling 104 nlabel 7432 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000301.label Connecting and filling vertices in path at fillseed 368 Finding path..................................................................................................................................................................... done Filling 368 nlabel 5292 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000401.label Connecting and filling vertices in path at fillseed 272 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 272 nlabel 8699 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000501.label Connecting and filling vertices in path at fillseed 188 Finding path....................................................................................................................................................... done Filling 188 nlabel 6811 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000601.label Connecting and filling vertices in path at fillseed 570 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 570 nlabel 6462 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000701.label Connecting and filling vertices in path at fillseed 1249 Finding path.............................................................................................................................................................................................................................................................................................................................................................. done Filling 1249 nlabel 9227 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000801.label Connecting and filling vertices in path at fillseed 1566 Finding path..................................................................................................................................................................... done Filling 1566 nlabel 5845 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000901.label Connecting and filling vertices in path at fillseed 400 Finding path..................................................................................................................................................................................... done Filling 400 nlabel 6347 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001001.label Connecting and filling vertices in path at fillseed 2264 Finding path.................................................................................................................................................................................................................................................................................................................................................... done Filling 2264 nlabel 7835 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001101.label Connecting and filling vertices in path at fillseed 825 Finding path................................................................................................................................................................................................................................................................................................................................... done Filling 825 nlabel 10106 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001201.label Connecting and filling vertices in path at fillseed 1261 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 1261 nlabel 8993 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001301.label Connecting and filling vertices in path at fillseed 925 Finding path.................................................................................................................................................................................................................................... done Filling 925 nlabel 7495 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001401.label Connecting and filling vertices in path at fillseed 1018 Finding path................................................................................................................................................................................. done Filling 1018 nlabel 5042 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001501.label Connecting and filling vertices in path at fillseed 1646 Finding path.............................................................................................................................................................................................................................................................................................................................. done Filling 1646 nlabel 8551 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001601.label Connecting and filling vertices in path at fillseed 1615 Finding path....................................................................................................................................... done Filling 1615 nlabel 6346 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001701.label Connecting and filling vertices in path at fillseed 2190 Finding path......................................................................................................................................................................................................................................................................................................................... done Filling 2190 nlabel 8591 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001801.label Connecting and filling vertices in path at fillseed 2686 Finding path........................................................................................................................................................................................................................................................................................................................ done Filling 2686 nlabel 7263 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001901.label Connecting and filling vertices in path at fillseed 1703 Finding path.................................................................................................................................................................................................................................................................................................................................................................... done Filling 1703 nlabel 8913 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002001.label Connecting and filling vertices in path at fillseed 1449 Finding path........................................................................................................................................................................................................................... done Filling 1449 nlabel 6093 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002101.label Connecting and filling vertices in path at fillseed 2600 Finding path.............................................................................................................................................. done Filling 2600 nlabel 5033 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002201.label Connecting and filling vertices in path at fillseed 2189 Finding path.............................................................................................................................................................................................................................................................................................................................................................. done Filling 2189 nlabel 8268 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002301.label Connecting and filling vertices in path at fillseed 2067 Finding path................................................................................................................................................................................. done Filling 2067 nlabel 6607 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002401.label Connecting and filling vertices in path at fillseed 1977 Finding path...................................................................................................................................................................................................................................... done Filling 1977 nlabel 6155 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002501.label Connecting and filling vertices in path at fillseed 2608 Finding path.................................................................................................................................................................... done Filling 2608 nlabel 5141 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002601.label Connecting and filling vertices in path at fillseed 3241 Finding path............................................................................................................................................................................................................................................................................................................................................................... done Filling 3241 nlabel 9027 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002701.label Connecting and filling vertices in path at fillseed 4023 Finding path.......................................................................................................................................................................................................................................................................................................... done Filling 4023 nlabel 7907 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002801.label Connecting and filling vertices in path at fillseed 4994 Finding path......................................................................................................................................................................................................................................................................................... done Filling 4994 nlabel 6900 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002901.label Connecting and filling vertices in path at fillseed 3126 Finding path................................................................................................................................................................................... done Filling 3126 nlabel 5195 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003001.label Connecting and filling vertices in path at fillseed 3855 Finding path........................................................................................................................................................................................................................................................................................................................... done Filling 3855 nlabel 8934 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003101.label Connecting and filling vertices in path at fillseed 3165 Finding path................................................................................................................................................................... done Filling 3165 nlabel 6371 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003201.label Connecting and filling vertices in path at fillseed 4026 Finding path................................................................................................................................................................................................................................................................................................................................ done Filling 4026 nlabel 8522 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003301.label Connecting and filling vertices in path at fillseed 3944 Finding path..................................................................................................................................................................................................................................................................................................... done Filling 3944 nlabel 6899 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003401.label Connecting and filling vertices in path at fillseed 6175 Finding path........................................................................................................................................................................................................................................................................................................................................................................... done Filling 6175 nlabel 6173 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003501.label Connecting and filling vertices in path at fillseed 4568 Finding path............................................................................................................................................................... done Filling 4568 nlabel 4885 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003601.label Connecting and filling vertices in path at fillseed 5435 Finding path....................................................................................................................................................................................................................................................................................................................... done Filling 5435 nlabel 8571 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003701.label Connecting and filling vertices in path at fillseed 6343 Finding path................................................................................................................................................................................................................................................................................................... done Filling 6343 nlabel 8267 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003801.label Connecting and filling vertices in path at fillseed 4095 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 4095 nlabel 7624 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003901.label Connecting and filling vertices in path at fillseed 6165 Finding path...................................................................................................................................................................................................................................................................... done Filling 6165 nlabel 5138 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004001.label Connecting and filling vertices in path at fillseed 6135 Finding path.............................................................................................................................................................................................. done Filling 6135 nlabel 4991 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004101.label Connecting and filling vertices in path at fillseed 6078 Finding path..................................................................................................................................................................................................................................................................... done Filling 6078 nlabel 6355 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004201.label Connecting and filling vertices in path at fillseed 6448 Finding path............................................................................................................................................................................................................................................................................................................. done Filling 6448 nlabel 9954 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004301.label Connecting and filling vertices in path at fillseed 5147 Finding path................................................................................................................................................................................................................................... done Filling 5147 nlabel 6325 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004401.label Connecting and filling vertices in path at fillseed 6943 Finding path................................................................................................................................................ done Filling 6943 nlabel 5513 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004501.label Connecting and filling vertices in path at fillseed 7088 Finding path....................................................................................................................................................................................................................................................................................................................... done Filling 7088 nlabel 8414 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004601.label Connecting and filling vertices in path at fillseed 5900 Finding path............................................................................................................................................................................................................................................................................... done Filling 5900 nlabel 7413 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004701.label Connecting and filling vertices in path at fillseed 7335 Finding path.................................................................................................................................................................................................................................................................................................................................................. done Filling 7335 nlabel 9778 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004801.label Connecting and filling vertices in path at fillseed 5147 Finding path................................................................................................................................................................................................ done Filling 5147 nlabel 5980 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004901.label Connecting and filling vertices in path at fillseed 6987 Finding path..................................................................................................................................................................................................................................................................................................................................................................... done Filling 6987 nlabel 9251 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005001.label Connecting and filling vertices in path at fillseed 7144 Finding path........................................................................................................................................................................................................................................................................................................................................................... done Filling 7144 nlabel 8647 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005101.label Connecting and filling vertices in path at fillseed 7474 Finding path............................................................................................................................................................................................................................................................................................................................................................. done Filling 7474 nlabel 8535 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005201.label Connecting and filling vertices in path at fillseed 5723 Finding path..................................................................................................................................................................................................................................................................................................................... done Filling 5723 nlabel 8918 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005301.label Connecting and filling vertices in path at fillseed 7821 Finding path.................................................................................................................................. done Filling 7821 nlabel 5530 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005401.label Connecting and filling vertices in path at fillseed 7940 Finding path.............................................................................................................................................................................................................................................................................................................................. done Filling 7940 nlabel 8702 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005501.label Connecting and filling vertices in path at fillseed 7564 Finding path........................................................................................................................................................................................................................................... done Filling 7564 nlabel 8061 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005601.label Connecting and filling vertices in path at fillseed 7893 Finding path....................................................................................................................................................................................................................................... done Filling 7893 nlabel 4406 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005701.label Connecting and filling vertices in path at fillseed 8735 Finding path..................................................................................................................................................... done Filling 8735 nlabel 4612 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005801.label Connecting and filling vertices in path at fillseed 9841 Finding path.................................................................................................................................................................................................................................................................................................................................................... done Filling 9841 nlabel 8282 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005901.label Connecting and filling vertices in path at fillseed 7582 Finding path............................................................................................................................................................................................................................................................. done Filling 7582 nlabel 7629 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006001.label Connecting and filling vertices in path at fillseed 8326 Finding path......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 8326 nlabel 9327 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006101.label Connecting and filling vertices in path at fillseed 10033 Finding path.................................................................................................................................................................................................................................................................................... done Filling 10033 nlabel 6569 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006201.label Connecting and filling vertices in path at fillseed 11908 Finding path....................................................................................................................................................................................................................................................................................................................... done Filling 11908 nlabel 6013 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006301.label Connecting and filling vertices in path at fillseed 10907 Finding path.............................................................................................................................................................................................................................................................................................................................................................. done Filling 10907 nlabel 8240 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006401.label Connecting and filling vertices in path at fillseed 11091 Finding path............................................................................................................................................................................................................................................................................................................................ done Filling 11091 nlabel 9422 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006501.label Connecting and filling vertices in path at fillseed 9997 Finding path............................................................................................................................................................................................................................................................ done Filling 9997 nlabel 6499 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006601.label Connecting and filling vertices in path at fillseed 9708 Finding path............................................................................................................................................................ done Filling 9708 nlabel 5392 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006701.label Connecting and filling vertices in path at fillseed 10834 Finding path........................................................................................................................................................................................................................................................................................................................................................................ done Filling 10834 nlabel 7590 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006801.label Connecting and filling vertices in path at fillseed 11746 Finding path.................................................................................................................................................................................................................................................... done Filling 11746 nlabel 6671 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006901.label Connecting and filling vertices in path at fillseed 10361 Finding path................................................................................................................................................................................................................................................................................................................. done Filling 10361 nlabel 8502 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007001.label Connecting and filling vertices in path at fillseed 8510 Finding path......................................................................................................................................................................................................................................... done Filling 8510 nlabel 9755 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007101.label Connecting and filling vertices in path at fillseed 10768 Finding path................................................................................................................................. done Filling 10768 nlabel 5552 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007201.label Connecting and filling vertices in path at fillseed 13194 Finding path.................................................................................................................................................................................................................................................................................... done Filling 13194 nlabel 8491 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007301.label Connecting and filling vertices in path at fillseed 12225 Finding path........................................................................................................................................................................................................................................................................................................................................................ done Filling 12225 nlabel 9662 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007401.label Connecting and filling vertices in path at fillseed 10285 Finding path....................................................................................................................................................................................................................................................................................... done Filling 10285 nlabel 9520 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007501.label Connecting and filling vertices in path at fillseed 11887 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 11887 nlabel 5554 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007601.label Connecting and filling vertices in path at fillseed 13176 Finding path.................................................................................................................................................................................................................................................................................................................................... done Filling 13176 nlabel 10143 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007701.label Connecting and filling vertices in path at fillseed 13803 Finding path............................................................................................................................................................................................................................................................................................................................ done Filling 13803 nlabel 8255 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007801.label Connecting and filling vertices in path at fillseed 13757 Finding path.................................................................................................................................................................................................................................................................................. done Filling 13757 nlabel 8866 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007901.label Connecting and filling vertices in path at fillseed 13032 Finding path........................................................................................................................................................................................................................................................................................................................................... done Filling 13032 nlabel 8239 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008001.label Connecting and filling vertices in path at fillseed 12875 Finding path.................................................................................................................................................................................................. done Filling 12875 nlabel 6931 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008101.label Connecting and filling vertices in path at fillseed 15788 Finding path......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 15788 nlabel 9098 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008201.label Connecting and filling vertices in path at fillseed 13713 Finding path.......................................................................................................................................................................................................................................................... done Filling 13713 nlabel 8775 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008301.label Connecting and filling vertices in path at fillseed 14164 Finding path............................................................................................................................................................. done Filling 14164 nlabel 5866 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008401.label Connecting and filling vertices in path at fillseed 12909 Finding path..................................................................................................................................................................................................................................... done Filling 12909 nlabel 6489 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008501.label Connecting and filling vertices in path at fillseed 17268 Finding path................................................................................................................................................................................................................................................................ done Filling 17268 nlabel 8199 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008601.label Connecting and filling vertices in path at fillseed 14573 Finding path........................................................................................................................................................................................................................................................................................ done Filling 14573 nlabel 7597 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008701.label Connecting and filling vertices in path at fillseed 11844 Finding path................................................................................................................................................. done Filling 11844 nlabel 6021 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008801.label Connecting and filling vertices in path at fillseed 14170 Finding path................................................................................................................................................................................................... done Filling 14170 nlabel 6334 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008901.label Connecting and filling vertices in path at fillseed 15156 Finding path................................................................................................................................................................................................................................................................................................................................. done Filling 15156 nlabel 7661 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009001.label Connecting and filling vertices in path at fillseed 18239 Finding path..................................................................................................................................................................................................................................................................................................................................... done Filling 18239 nlabel 6864 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009101.label Connecting and filling vertices in path at fillseed 17460 Finding path........................................................................................................................................................................................................................................................................................... done Filling 17460 nlabel 9501 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009201.label Connecting and filling vertices in path at fillseed 20074 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 20074 nlabel 6731 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009301.label Connecting and filling vertices in path at fillseed 16590 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 16590 nlabel 10322 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009401.label Connecting and filling vertices in path at fillseed 16178 Finding path.................................................................................................................................................................................................................................................................................................................................. done Filling 16178 nlabel 8309 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009501.label Connecting and filling vertices in path at fillseed 15724 Finding path................................................................................................................................................................................................................................................................. done Filling 15724 nlabel 7280 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009601.label Connecting and filling vertices in path at fillseed 14144 Finding path.......................................................................................................................................................................... done Filling 14144 nlabel 5865 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009701.label Connecting and filling vertices in path at fillseed 14154 Finding path................................................................................................................................................................................................................................................ done Filling 14154 nlabel 6547 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009801.label Connecting and filling vertices in path at fillseed 16407 Finding path...................................................................................................................................................................................................................................... done Filling 16407 nlabel 7178 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009901.label Connecting and filling vertices in path at fillseed 18589 Finding path......................................................................................................................................................................................................................................................................................................................................... done Filling 18589 nlabel 8531 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010001.label Connecting and filling vertices in path at fillseed 17182 Finding path...................................................................................................................................................................................................................................................................................... done Filling 17182 nlabel 8794 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010101.label Connecting and filling vertices in path at fillseed 22533 Finding path............................................................................................................................................................................. done Filling 22533 nlabel 5309 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010201.label Connecting and filling vertices in path at fillseed 18907 Finding path............................................................................................................................................................................................................................................................................................................................................ done Filling 18907 nlabel 9370 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010301.label Connecting and filling vertices in path at fillseed 19219 Finding path............................................................................................................................................................................................................................................................................................................................................................................ done Filling 19219 nlabel 9230 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010401.label Connecting and filling vertices in path at fillseed 17907 Finding path.................................................................................................................................................................................................................................................................................... done Filling 17907 nlabel 6901 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010501.label Connecting and filling vertices in path at fillseed 22598 Finding path..................................................................................................................................................................................... done Filling 22598 nlabel 5240 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010601.label Connecting and filling vertices in path at fillseed 22549 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 22549 nlabel 8145 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010701.label Connecting and filling vertices in path at fillseed 20304 Finding path........................................................................................................................................................................................................................................................................................................................................................................... done Filling 20304 nlabel 10017 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010801.label Connecting and filling vertices in path at fillseed 19632 Finding path.......................................................................................................................................................................................................................................................................................... done Filling 19632 nlabel 8428 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010901.label Connecting and filling vertices in path at fillseed 19706 Finding path............................................................................................................................................................................................................................................................................................................... done Filling 19706 nlabel 8800 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011001.label Connecting and filling vertices in path at fillseed 22520 Finding path...................................................................................................................................................................................................... done Filling 22520 nlabel 5521 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011101.label Connecting and filling vertices in path at fillseed 21365 Finding path................................................................................................................................................................................................................................................................................................................................................................... done Filling 21365 nlabel 8358 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011201.label Connecting and filling vertices in path at fillseed 21541 Finding path...................................................................................................................................................................................................................................................................................................................... done Filling 21541 nlabel 9775 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011301.label Connecting and filling vertices in path at fillseed 19027 Finding path................................................................................................................................................................................................................................................................................ done Filling 19027 nlabel 7177 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011401.label Connecting and filling vertices in path at fillseed 22556 Finding path.................................................................................................................................................................................................... done Filling 22556 nlabel 5537 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011501.label Connecting and filling vertices in path at fillseed 26277 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 26277 nlabel 9202 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011601.label Connecting and filling vertices in path at fillseed 24072 Finding path................................................................................................................................................................................................................................................................................................................................... done Filling 24072 nlabel 9329 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011701.label Connecting and filling vertices in path at fillseed 27098 Finding path........................................................................................................................................................................................................................................................ done Filling 27098 nlabel 8477 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011801.label Connecting and filling vertices in path at fillseed 20839 Finding path................................................................................................................................................................................................................. done Filling 20839 nlabel 8694 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011901.label Connecting and filling vertices in path at fillseed 24981 Finding path............................................................................................................................................................................................. done Filling 24981 nlabel 5768 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012001.label Connecting and filling vertices in path at fillseed 22643 Finding path......................................................................................................................................................................................................................................................................................................................................................................... done Filling 22643 nlabel 9598 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012101.label Connecting and filling vertices in path at fillseed 24617 Finding path......................................................................................................................................................................................................................................................... done Filling 24617 nlabel 8588 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012201.label Connecting and filling vertices in path at fillseed 22955 Finding path........................................................................................................................................................................................................................ done Filling 22955 nlabel 7119 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012301.label Connecting and filling vertices in path at fillseed 23735 Finding path.............................................................................................................................................................................................. done Filling 23735 nlabel 6546 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012401.label Connecting and filling vertices in path at fillseed 27564 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 27564 nlabel 9156 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012501.label Connecting and filling vertices in path at fillseed 27859 Finding path............................................................................................................................................................................................................................................... done Filling 27859 nlabel 9514 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012601.label Connecting and filling vertices in path at fillseed 27021 Finding path.............................................................................................................................................................................................................................................................................................................................. done Filling 27021 nlabel 8918 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012701.label Connecting and filling vertices in path at fillseed 24678 Finding path.......................................................................................................................................................................................................................................................................................................... done Filling 24678 nlabel 8959 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012801.label Connecting and filling vertices in path at fillseed 23752 Finding path................................................................................................................................................................................................................... done Filling 23752 nlabel 7173 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012901.label Connecting and filling vertices in path at fillseed 27764 Finding path..................................................................................................................................................................................................................................................................................................................................................................... done Filling 27764 nlabel 9579 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013001.label Connecting and filling vertices in path at fillseed 30896 Finding path........................................................................................................................................................................................................................................................................... done Filling 30896 nlabel 8988 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013101.label Connecting and filling vertices in path at fillseed 26971 Finding path................................................................................................................................................................................................................................................................... done Filling 26971 nlabel 9444 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013201.label Connecting and filling vertices in path at fillseed 24958 Finding path............................................................................................................................................................................................................. done Filling 24958 nlabel 6824 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013301.label Connecting and filling vertices in path at fillseed 26360 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 26360 nlabel 9291 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013401.label Connecting and filling vertices in path at fillseed 29870 Finding path.......................................................................................................................................................................................................................................................................................................... done Filling 29870 nlabel 6679 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013501.label Connecting and filling vertices in path at fillseed 30879 Finding path................................................................................................................................................................................................................................................................................. done Filling 30879 nlabel 9132 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013601.label Connecting and filling vertices in path at fillseed 23476 Finding path.................................................................................................................................................................................................................................................................................. done Filling 23476 nlabel 8426 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013701.label Connecting and filling vertices in path at fillseed 24963 Finding path.............................................................................................................................................................................................. done Filling 24963 nlabel 7023 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013801.label Connecting and filling vertices in path at fillseed 29909 Finding path........................................................................................................................................................................................................................................................................................................ done Filling 29909 nlabel 5480 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013901.label Connecting and filling vertices in path at fillseed 29330 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 29330 nlabel 7355 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014001.label Connecting and filling vertices in path at fillseed 26511 Finding path.......................................................................................................................................................... done Filling 26511 nlabel 6635 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014101.label Connecting and filling vertices in path at fillseed 25002 Finding path........................................................................................................................................................................................................ done Filling 25002 nlabel 5848 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014201.label Connecting and filling vertices in path at fillseed 24963 Finding path.................................................................................................................................................................................................................. done Filling 24963 nlabel 6771 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014301.label Connecting and filling vertices in path at fillseed 29933 Finding path........................................................................................................................................................................................................................................................ done Filling 29933 nlabel 6437 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014401.label Connecting and filling vertices in path at fillseed 35001 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 35001 nlabel 8475 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014501.label Connecting and filling vertices in path at fillseed 26839 Finding path................................................................................................................................................................................................................................................ done Filling 26839 nlabel 8425 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014601.label Connecting and filling vertices in path at fillseed 29969 Finding path............................................................................................................................................................................................................................ done Filling 29969 nlabel 5691 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014701.label Connecting and filling vertices in path at fillseed 28859 Finding path..................................................................................................................................................................................................................................................................................................................................................................... done Filling 28859 nlabel 9579 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014801.label Connecting and filling vertices in path at fillseed 34295 Finding path................................................................................................................................................................................................................................................................................................... done Filling 34295 nlabel 6623 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014901.label Connecting and filling vertices in path at fillseed 26524 Finding path............................................................................................................................................................................................ done Filling 26524 nlabel 6394 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015001.label Connecting and filling vertices in path at fillseed 27552 Finding path.................................................................................................................................................................................................................. done Filling 27552 nlabel 7090 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015101.label Connecting and filling vertices in path at fillseed 31049 Finding path............................................................................................................................................................................................... done Filling 31049 nlabel 6677 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015201.label Connecting and filling vertices in path at fillseed 29021 Finding path.................................................................................................................................................................................................................................. done Filling 29021 nlabel 9187 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015301.label Connecting and filling vertices in path at fillseed 35012 Finding path................................................................................................................................................................................................................................................................................................................................................... done Filling 35012 nlabel 8807 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015401.label Connecting and filling vertices in path at fillseed 32783 Finding path.......................................................................................................................................................................................................................................... done Filling 32783 nlabel 8515 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015501.label Connecting and filling vertices in path at fillseed 33303 Finding path.................................................................................................................................................................................................. done Filling 33303 nlabel 5732 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015601.label Connecting and filling vertices in path at fillseed 33282 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 33282 nlabel 7996 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015701.label Connecting and filling vertices in path at fillseed 30132 Finding path.................................................................................................................................................................................................................................................................................................................... done Filling 30132 nlabel 10472 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015801.label Connecting and filling vertices in path at fillseed 36178 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 36178 nlabel 9930 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015901.label Connecting and filling vertices in path at fillseed 29332 Finding path................................................................................................................................................................................................................................................................................ done Filling 29332 nlabel 7902 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016001.label Connecting and filling vertices in path at fillseed 35508 Finding path........................................................................................................................................................................................ done Filling 35508 nlabel 6065 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016101.label Connecting and filling vertices in path at fillseed 32092 Finding path..................................................................................................................................................................................................................... done Filling 32092 nlabel 6407 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016201.label Connecting and filling vertices in path at fillseed 31309 Finding path...................................................................................................................................................................................................................................................................................................... done Filling 31309 nlabel 10145 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016301.label Connecting and filling vertices in path at fillseed 36390 Finding path..................................................................................................................................................................................................................................................................................................................... done Filling 36390 nlabel 8586 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016401.label Connecting and filling vertices in path at fillseed 36085 Finding path............................................................................................................................................................................................................................................................................ done Filling 36085 nlabel 8191 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016501.label Connecting and filling vertices in path at fillseed 35512 Finding path.............................................................................................................................................................................................................................................................................. done Filling 35512 nlabel 6962 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016601.label Connecting and filling vertices in path at fillseed 32205 Finding path................................................................................................................................................................................................................................................................................................................................................................................. done Filling 32205 nlabel 10524 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016701.label Connecting and filling vertices in path at fillseed 32448 Finding path.......................................................................................................................................................................................................................................................................................................................................................................... done Filling 32448 nlabel 9964 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016801.label Connecting and filling vertices in path at fillseed 36391 Finding path............................................................................................................................................................................................................................................................................................................................... done Filling 36391 nlabel 8619 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016901.label Connecting and filling vertices in path at fillseed 32562 Finding path................................................................................................................................................................... done Filling 32562 nlabel 5413 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017001.label Connecting and filling vertices in path at fillseed 34323 Finding path........................................................................................................................................................................................................................................................................................................................... done Filling 34323 nlabel 7069 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017101.label Connecting and filling vertices in path at fillseed 37924 Finding path................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 37924 nlabel 10598 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017201.label Connecting and filling vertices in path at fillseed 38652 Finding path.................................................................................................................................................................................................................................................................................................................................. done Filling 38652 nlabel 8119 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017301.label Connecting and filling vertices in path at fillseed 37791 Finding path.................................................................................................................................................................................................................................. done Filling 37791 nlabel 6682 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017401.label Connecting and filling vertices in path at fillseed 34079 Finding path.......................................................................................................................................................................................................................................................................................................................................................... done Filling 34079 nlabel 7882 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017501.label Connecting and filling vertices in path at fillseed 38847 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 38847 nlabel 8770 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017601.label Connecting and filling vertices in path at fillseed 37850 Finding path............................................................................................................................................................................................................................................................................................................................................................ done Filling 37850 nlabel 9131 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017701.label Connecting and filling vertices in path at fillseed 34370 Finding path.......................................................................................................................................................................................................................... done Filling 34370 nlabel 6445 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017801.label Connecting and filling vertices in path at fillseed 37661 Finding path.................................................................................................................................................................................................................................................................................... done Filling 37661 nlabel 7384 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017901.label Connecting and filling vertices in path at fillseed 38818 Finding path....................................................................................................................................................................................................................................................... done Filling 38818 nlabel 6421 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018001.label Connecting and filling vertices in path at fillseed 37712 Finding path............................................................................................................................................................................................... done Filling 37712 nlabel 4878 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018101.label Connecting and filling vertices in path at fillseed 37758 Finding path.................................................................................................................................................................................................................................................................................................................................................................................... done Filling 37758 nlabel 9007 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018201.label Connecting and filling vertices in path at fillseed 39091 Finding path....................................................................................................................................................................................................................................................................................................................................................... done Filling 39091 nlabel 10243 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018301.label Connecting and filling vertices in path at fillseed 37184 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 37184 nlabel 9664 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018401.label Connecting and filling vertices in path at fillseed 35783 Finding path........................................................................................................................................................................ done Filling 35783 nlabel 6791 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018501.label Connecting and filling vertices in path at fillseed 35310 Finding path............................................................................................................................................................................................................................................................................................................... done Filling 35310 nlabel 8779 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018601.label Connecting and filling vertices in path at fillseed 37789 Finding path................................................................................................................................................................................................................................................................................................................................................. done Filling 37789 nlabel 9132 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018701.label Connecting and filling vertices in path at fillseed 38772 Finding path.................................................................................................................................................................................................................................................................................................................................................... done Filling 38772 nlabel 7269 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018801.label Connecting and filling vertices in path at fillseed 39858 Finding path........................................................................................................................................................................................................................................................ done Filling 39858 nlabel 6022 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018901.label Connecting and filling vertices in path at fillseed 39495 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 39495 nlabel 8163 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019001.label Connecting and filling vertices in path at fillseed 40886 Finding path.................................................................................................................................................................. done Filling 40886 nlabel 6383 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019101.label Connecting and filling vertices in path at fillseed 40147 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 40147 nlabel 9977 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019201.label Connecting and filling vertices in path at fillseed 40770 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 40770 nlabel 7664 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019301.label Connecting and filling vertices in path at fillseed 42003 Finding path............................................................................................................................................................................................... done Filling 42003 nlabel 4590 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019401.label Connecting and filling vertices in path at fillseed 40948 Finding path........................................................................................................................................................................................................................................................................................................................................................................................... done Filling 40948 nlabel 7541 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019501.label Connecting and filling vertices in path at fillseed 38754 Finding path...................................................................................................................................................................................................... done Filling 38754 nlabel 6688 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019601.label Connecting and filling vertices in path at fillseed 41827 Finding path.................................................................................................................................................................................................................................................................................................. done Filling 41827 nlabel 8688 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019701.label Connecting and filling vertices in path at fillseed 41610 Finding path............................................................................................................................................................................................................................................................................................................................ done Filling 41610 nlabel 7882 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019801.label Connecting and filling vertices in path at fillseed 40869 Finding path................................................................................................................................................................................................................... done Filling 40869 nlabel 6927 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019901.label Connecting and filling vertices in path at fillseed 43198 Finding path.............................................................................................................................................................................................................................................................................................................................................. done Filling 43198 nlabel 10604 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020001.label Connecting and filling vertices in path at fillseed 40565 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 40565 nlabel 11136 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020101.label Connecting and filling vertices in path at fillseed 45621 Finding path............................................................................................................................................................................... done Filling 45621 nlabel 6075 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020201.label Connecting and filling vertices in path at fillseed 42676 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 42676 nlabel 7177 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020301.label Connecting and filling vertices in path at fillseed 42930 Finding path.......................................................................................................................................................................................... done Filling 42930 nlabel 6234 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020401.label Connecting and filling vertices in path at fillseed 47298 Finding path................................................................................................................................................................................................. done Filling 47298 nlabel 6800 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020501.label Connecting and filling vertices in path at fillseed 40420 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 40420 nlabel 7226 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020601.label Connecting and filling vertices in path at fillseed 43507 Finding path...................................................................................................................................................................................... done Filling 43507 nlabel 5465 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020701.label Connecting and filling vertices in path at fillseed 41992 Finding path.......................................................................................................................................................................................................... done Filling 41992 nlabel 6111 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020801.label Connecting and filling vertices in path at fillseed 41956 Finding path.......................................................................................................................................................................................... done Filling 41956 nlabel 7167 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020901.label Connecting and filling vertices in path at fillseed 46177 Finding path............................................................................................................................................................................................................................................................................................................................... done Filling 46177 nlabel 6735 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021001.label Connecting and filling vertices in path at fillseed 46035 Finding path.......................................................................................................................................................................................................................................................................................................................................................... done Filling 46035 nlabel 7541 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021101.label Connecting and filling vertices in path at fillseed 46998 Finding path................................................................................................................................................................................................................................................................................................................................ done Filling 46998 nlabel 7845 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021201.label Connecting and filling vertices in path at fillseed 45005 Finding path....................................................................................................................................................................................................... done Filling 45005 nlabel 6423 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021301.label Connecting and filling vertices in path at fillseed 47314 Finding path......................................................................................................................................................................................................... done Filling 47314 nlabel 5676 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021401.label Connecting and filling vertices in path at fillseed 47173 Finding path............................................................................................................................................................................................................................................................................................................................................................ done Filling 47173 nlabel 7792 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021501.label Connecting and filling vertices in path at fillseed 42577 Finding path............................................................................................................................................................................................................................................................................................... done Filling 42577 nlabel 7022 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021601.label Connecting and filling vertices in path at fillseed 46149 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 46149 nlabel 7923 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021701.label Connecting and filling vertices in path at fillseed 46391 Finding path............................................................................................................................................................................................................................................................................................................................................................................................... done Filling 46391 nlabel 9457 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021801.label Connecting and filling vertices in path at fillseed 46822 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 46822 nlabel 11148 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021901.label Connecting and filling vertices in path at fillseed 46394 Finding path........................................................................................................................................................................................... done Filling 46394 nlabel 6262 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022001.label Connecting and filling vertices in path at fillseed 47035 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 47035 nlabel 8073 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022101.label Connecting and filling vertices in path at fillseed 48503 Finding path................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 48503 nlabel 10411 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022201.label Connecting and filling vertices in path at fillseed 48857 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 48857 nlabel 9736 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022301.label Connecting and filling vertices in path at fillseed 49381 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 49381 nlabel 8617 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022401.label Connecting and filling vertices in path at fillseed 49111 Finding path...................................................................................................................................................................................................................................................................................................... done Filling 49111 nlabel 6696 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022501.label Connecting and filling vertices in path at fillseed 46239 Finding path..................................................................................................................................................................................................................................................................................................................................................................................... done Filling 46239 nlabel 8642 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022601.label Connecting and filling vertices in path at fillseed 49660 Finding path................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 49660 nlabel 10904 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022701.label Connecting and filling vertices in path at fillseed 48341 Finding path............................................................................................................................................................................................................................................................................................................................................................................................... done Filling 48341 nlabel 6680 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022801.label Connecting and filling vertices in path at fillseed 50723 Finding path....................................................................................................................................................................... done Filling 50723 nlabel 4563 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022901.label Connecting and filling vertices in path at fillseed 49522 Finding path.................................................................................................................................................................................... done Filling 49522 nlabel 5003 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023001.label Connecting and filling vertices in path at fillseed 48367 Finding path......................................................................................................................................................................................................................................................................................................................................... done Filling 48367 nlabel 6924 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023101.label Connecting and filling vertices in path at fillseed 51031 Finding path........................................................................................................................................................................................................................................................................................................................................... done Filling 51031 nlabel 9728 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023201.label Connecting and filling vertices in path at fillseed 52516 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 52516 nlabel 10383 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023301.label Connecting and filling vertices in path at fillseed 52317 Finding path................................................................................................................................................................... done Filling 52317 nlabel 6100 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023401.label Connecting and filling vertices in path at fillseed 48413 Finding path....................................................................................................................................................................................................................................................................................................................................................... done Filling 48413 nlabel 8430 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023501.label Connecting and filling vertices in path at fillseed 50905 Finding path............................................................................................................................................................................................................................................................................................................................................................... done Filling 50905 nlabel 10402 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023601.label Connecting and filling vertices in path at fillseed 51681 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 51681 nlabel 7572 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023701.label Connecting and filling vertices in path at fillseed 50961 Finding path................................................................................................................................................. done Filling 50961 nlabel 6615 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023801.label Connecting and filling vertices in path at fillseed 51663 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 51663 nlabel 9159 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023901.label Connecting and filling vertices in path at fillseed 51929 Finding path............................................................................................................................................................................................................................................................................................................................................................................................. done Filling 51929 nlabel 11017 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024001.label Connecting and filling vertices in path at fillseed 49015 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 49015 nlabel 9686 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024101.label Connecting and filling vertices in path at fillseed 51930 Finding path........................................................................................................................................................................................ done Filling 51930 nlabel 6661 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024201.label Connecting and filling vertices in path at fillseed 50686 Finding path......................................................................................................................................................................................................................................... done Filling 50686 nlabel 5125 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024301.label Connecting and filling vertices in path at fillseed 53855 Finding path............................................................................................................................................................. done Filling 53855 nlabel 6194 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024401.label Connecting and filling vertices in path at fillseed 128869 Finding path.................................................................................................................................. done Filling 128869 nlabel 5109 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024501.label Connecting and filling vertices in path at fillseed 52847 Finding path........................................................................................................................................................................ done Filling 52847 nlabel 4865 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024601.label Connecting and filling vertices in path at fillseed 53645 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 53645 nlabel 9073 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024701.label Connecting and filling vertices in path at fillseed 53952 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 53952 nlabel 11388 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024801.label Connecting and filling vertices in path at fillseed 55329 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 55329 nlabel 8870 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024901.label Connecting and filling vertices in path at fillseed 54991 Finding path............................................................................................................................................. done Filling 54991 nlabel 6933 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025001.label Connecting and filling vertices in path at fillseed 54714 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 54714 nlabel 9204 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025101.label Connecting and filling vertices in path at fillseed 53950 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 53950 nlabel 10016 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025201.label Connecting and filling vertices in path at fillseed 57663 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 57663 nlabel 9789 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025301.label Connecting and filling vertices in path at fillseed 55757 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 55757 nlabel 10648 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025401.label Connecting and filling vertices in path at fillseed 57534 Finding path..................................................................................................................................................................................................................... done Filling 57534 nlabel 6648 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025501.label Connecting and filling vertices in path at fillseed 55993 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 55993 nlabel 7947 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025601.label Connecting and filling vertices in path at fillseed 55050 Finding path.................................................................................................................................................................................................................................................................................................................................................... done Filling 55050 nlabel 9036 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025701.label Connecting and filling vertices in path at fillseed 54799 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 54799 nlabel 8535 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025801.label Connecting and filling vertices in path at fillseed 53993 Finding path......................................................................................................................................................................................... done Filling 53993 nlabel 6142 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025901.label Connecting and filling vertices in path at fillseed 54916 Finding path........................................................................................................................................................................................................ done Filling 54916 nlabel 6754 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026001.label Connecting and filling vertices in path at fillseed 56122 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 56122 nlabel 11059 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026101.label Connecting and filling vertices in path at fillseed 54798 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 54798 nlabel 7385 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026201.label Connecting and filling vertices in path at fillseed 58835 Finding path................................................................................................................................................................................................................................................................................................................. done Filling 58835 nlabel 4798 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026301.label Connecting and filling vertices in path at fillseed 55783 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 55783 nlabel 7333 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026401.label Connecting and filling vertices in path at fillseed 53858 Finding path.......................................................................................................................................................... done Filling 53858 nlabel 5549 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026501.label Connecting and filling vertices in path at fillseed 59359 Finding path................................................................................................................................................................................................................................................................................................................................................................... done Filling 59359 nlabel 6523 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026601.label Connecting and filling vertices in path at fillseed 57182 Finding path.................................................................................................................................... done Filling 57182 nlabel 3903 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026701.label Connecting and filling vertices in path at fillseed 57875 Finding path................................................................................................................................................................................................................................................................................................................................................................................... done Filling 57875 nlabel 4604 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026801.label Connecting and filling vertices in path at fillseed 59344 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 59344 nlabel 7160 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026901.label Connecting and filling vertices in path at fillseed 58282 Finding path.............................................................................................................................................. done Filling 58282 nlabel 5442 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027001.label Connecting and filling vertices in path at fillseed 60075 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60075 nlabel 12810 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027101.label Connecting and filling vertices in path at fillseed 57321 Finding path.................................................................................................................................................................................... done Filling 57321 nlabel 6450 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027201.label Connecting and filling vertices in path at fillseed 60376 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 60376 nlabel 7755 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027301.label Connecting and filling vertices in path at fillseed 60729 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 60729 nlabel 10230 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027401.label Connecting and filling vertices in path at fillseed 60957 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60957 nlabel 10229 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027501.label Connecting and filling vertices in path at fillseed 59519 Finding path................................................................................................................................................................................ done Filling 59519 nlabel 6874 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027601.label Connecting and filling vertices in path at fillseed 60300 Finding path......................................................................................................................................................................................................................................................................................................................................................................... done Filling 60300 nlabel 7174 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027701.label Connecting and filling vertices in path at fillseed 59457 Finding path...................................................................................................................................................................................................................................................... done Filling 59457 nlabel 8722 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027801.label Connecting and filling vertices in path at fillseed 60505 Finding path............................................................................................................................................................................................................................................................................................. done Filling 60505 nlabel 5551 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027901.label Connecting and filling vertices in path at fillseed 58316 Finding path................................................................................................................................. done Filling 58316 nlabel 3406 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028001.label Connecting and filling vertices in path at fillseed 63445 Finding path.................................................................................................................................................................................................................................................................................................................................................................................... done Filling 63445 nlabel 6526 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028101.label Connecting and filling vertices in path at fillseed 61569 Finding path........................................................................................................................................................................................................................................................................................................................................................... done Filling 61569 nlabel 7871 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028201.label Connecting and filling vertices in path at fillseed 63004 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 63004 nlabel 7913 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028301.label Connecting and filling vertices in path at fillseed 58061 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 58061 nlabel 8214 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028401.label Connecting and filling vertices in path at fillseed 60556 Finding path................................................................................................................................................................................................. done Filling 60556 nlabel 4468 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028501.label Connecting and filling vertices in path at fillseed 60490 Finding path......................................................................................................................................................................................................................................................................................................................................................... done Filling 60490 nlabel 8485 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028601.label Connecting and filling vertices in path at fillseed 62964 Finding path.................................................................................................................................................................................................................................................................................................................................................................................. done Filling 62964 nlabel 8697 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028701.label Connecting and filling vertices in path at fillseed 62064 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 62064 nlabel 12115 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028801.label Connecting and filling vertices in path at fillseed 65006 Finding path............................................................................................................................................................................................................ done Filling 65006 nlabel 6042 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028901.label Connecting and filling vertices in path at fillseed 64557 Finding path........................................................................................................................................................................................................................................................................................................................................................ done Filling 64557 nlabel 6845 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029001.label Connecting and filling vertices in path at fillseed 64807 Finding path................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 64807 nlabel 7392 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029101.label Connecting and filling vertices in path at fillseed 62028 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 62028 nlabel 10168 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029201.label Connecting and filling vertices in path at fillseed 66777 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 66777 nlabel 8015 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029301.label Connecting and filling vertices in path at fillseed 66618 Finding path................................................................................................................................................................................................................................................................................................................................................................ done Filling 66618 nlabel 6479 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029401.label Connecting and filling vertices in path at fillseed 63768 Finding path............................................................................................................................................................................................................................................................................................................................................. done Filling 63768 nlabel 8775 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029501.label Connecting and filling vertices in path at fillseed 66151 Finding path....................................................................................................................................................................................................................................................................................................................................................................................... done Filling 66151 nlabel 7962 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029601.label Connecting and filling vertices in path at fillseed 68798 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 68798 nlabel 13425 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029701.label Connecting and filling vertices in path at fillseed 68516 Finding path.......................................................................................................................................................................................................... done Filling 68516 nlabel 5445 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029801.label Connecting and filling vertices in path at fillseed 65682 Finding path..................................................................................................................................................................................................................................................................................................................................................... done Filling 65682 nlabel 8163 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029901.label Connecting and filling vertices in path at fillseed 66923 Finding path....................................................................................................................................................................................................................................................................................................................................................................................... done Filling 66923 nlabel 6719 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030001.label Connecting and filling vertices in path at fillseed 64264 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 64264 nlabel 12008 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030101.label Connecting and filling vertices in path at fillseed 67087 Finding path.................................................................................................................................................................................................................................................................................................................... done Filling 67087 nlabel 6353 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030201.label Connecting and filling vertices in path at fillseed 68811 Finding path................................................................................................................................................................................................................................................................................... done Filling 68811 nlabel 6556 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030301.label Connecting and filling vertices in path at fillseed 64800 Finding path................................................................................................................................................................................................................................................................................................................................................. done Filling 64800 nlabel 8341 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030401.label Connecting and filling vertices in path at fillseed 67209 Finding path............................................................................................................................................................................................................................................................................................................................................................. done Filling 67209 nlabel 9041 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030501.label Connecting and filling vertices in path at fillseed 71169 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 71169 nlabel 13243 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030601.label Connecting and filling vertices in path at fillseed 68514 Finding path............................................................................................................................................................................................ done Filling 68514 nlabel 5627 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030701.label Connecting and filling vertices in path at fillseed 66950 Finding path...................................................................................................................................................................................................................................................... done Filling 66950 nlabel 6587 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030801.label Connecting and filling vertices in path at fillseed 71604 Finding path....................................................................................................................................................................................................................................................................... done Filling 71604 nlabel 10077 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030901.label Connecting and filling vertices in path at fillseed 70891 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 70891 nlabel 10785 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031001.label Connecting and filling vertices in path at fillseed 71294 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 71294 nlabel 13190 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031101.label Connecting and filling vertices in path at fillseed 69704 Finding path............................................................................................................................................................................................................. done Filling 69704 nlabel 4432 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031201.label Connecting and filling vertices in path at fillseed 73629 Finding path...................................................................................................................................................................................................................................................................................................................... done Filling 73629 nlabel 9064 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031301.label Connecting and filling vertices in path at fillseed 72594 Finding path........................................................................................................................................................................................ done Filling 72594 nlabel 6165 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031401.label Connecting and filling vertices in path at fillseed 72038 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 72038 nlabel 11993 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031501.label Connecting and filling vertices in path at fillseed 71023 Finding path...................................................................................................................................................................................................................................... done Filling 71023 nlabel 4039 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031601.label Connecting and filling vertices in path at fillseed 73406 Finding path........................................................................................................................................................................................................................................................................................ done Filling 73406 nlabel 7890 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031701.label Connecting and filling vertices in path at fillseed 76876 Finding path....................................................................................................................................................................................................................................................................................................................................... done Filling 76876 nlabel 8013 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031801.label Connecting and filling vertices in path at fillseed 70813 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 70813 nlabel 10237 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031901.label Connecting and filling vertices in path at fillseed 72378 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 72378 nlabel 11340 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032001.label Connecting and filling vertices in path at fillseed 72235 Finding path....................................................................................................................................................................................................................................................... done Filling 72235 nlabel 6360 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032101.label Connecting and filling vertices in path at fillseed 73601 Finding path....................................................................................................................................................................................................................................................................................................... done Filling 73601 nlabel 8091 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032201.label Connecting and filling vertices in path at fillseed 73694 Finding path.................................................................................................................................................... done Filling 73694 nlabel 5544 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032301.label Connecting and filling vertices in path at fillseed 72063 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 72063 nlabel 11868 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032401.label Connecting and filling vertices in path at fillseed 72671 Finding path................................................................................................................................................................................................................. done Filling 72671 nlabel 6079 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032501.label Connecting and filling vertices in path at fillseed 74452 Finding path................................................................................................................................................................................................................................................................................................ done Filling 74452 nlabel 7751 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032601.label Connecting and filling vertices in path at fillseed 75905 Finding path........................................................................................................................................................................................................................................................................................................................................................................................ done Filling 75905 nlabel 8904 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032701.label Connecting and filling vertices in path at fillseed 70718 Finding path........................................................................................................................................................................................................................................................................................................................................... done Filling 70718 nlabel 9360 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032801.label Connecting and filling vertices in path at fillseed 73269 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 73269 nlabel 12938 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032901.label Connecting and filling vertices in path at fillseed 73867 Finding path................................................................................................................................................................................................................ done Filling 73867 nlabel 5893 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033001.label Connecting and filling vertices in path at fillseed 76718 Finding path................................................................................................................................................................................................................................................................................................... done Filling 76718 nlabel 7468 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033101.label Connecting and filling vertices in path at fillseed 72727 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 72727 nlabel 11079 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033201.label Connecting and filling vertices in path at fillseed 74139 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 74139 nlabel 12867 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033301.label Connecting and filling vertices in path at fillseed 75261 Finding path................................................................................................... done Filling 75261 nlabel 3637 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033401.label Connecting and filling vertices in path at fillseed 76531 Finding path.............................................................................................................................................................................................................................................................................................................. done Filling 76531 nlabel 7406 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033501.label Connecting and filling vertices in path at fillseed 77831 Finding path............................................................................................................................................................................................................................................................................................................................... done Filling 77831 nlabel 8187 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033601.label Connecting and filling vertices in path at fillseed 76025 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 76025 nlabel 10445 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033701.label Connecting and filling vertices in path at fillseed 76690 Finding path................................................................................................................................................................................................................................................. done Filling 76690 nlabel 6887 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033801.label Connecting and filling vertices in path at fillseed 76112 Finding path............................................................................................................................................................................................... done Filling 76112 nlabel 5006 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033901.label Connecting and filling vertices in path at fillseed 77783 Finding path................................................................................................................................................................................................................................................................ done Filling 77783 nlabel 7347 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034001.label Connecting and filling vertices in path at fillseed 77057 Finding path......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 77057 nlabel 9538 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034101.label Connecting and filling vertices in path at fillseed 76210 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 76210 nlabel 12852 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034201.label Connecting and filling vertices in path at fillseed 74755 Finding path........................................................................................................................................................... done Filling 74755 nlabel 5291 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034301.label Connecting and filling vertices in path at fillseed 78702 Finding path............................................................................................................................................................................................................................................................................................. done Filling 78702 nlabel 7161 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034401.label Connecting and filling vertices in path at fillseed 77979 Finding path.................................................................................................................................................................................................................................................................................................................. done Filling 77979 nlabel 8889 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034501.label Connecting and filling vertices in path at fillseed 75066 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 75066 nlabel 14636 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034601.label Connecting and filling vertices in path at fillseed 76542 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 76542 nlabel 11794 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034701.label Connecting and filling vertices in path at fillseed 75878 Finding path...................................................................................................................................................... done Filling 75878 nlabel 5479 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034801.label Connecting and filling vertices in path at fillseed 76941 Finding path.............................................................................................................................................................................................................................. done Filling 76941 nlabel 7025 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034901.label Connecting and filling vertices in path at fillseed 78042 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 78042 nlabel 9286 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035001.label Connecting and filling vertices in path at fillseed 77273 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 77273 nlabel 14588 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035101.label Connecting and filling vertices in path at fillseed 79266 Finding path................................................................................................................................................................................. done Filling 79266 nlabel 4967 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035201.label Connecting and filling vertices in path at fillseed 79660 Finding path...................................................................................................................................................................................................................................... done Filling 79660 nlabel 6878 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035301.label Connecting and filling vertices in path at fillseed 78955 Finding path.................................................................................................................................................................................................................................................................................................... done Filling 78955 nlabel 6969 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035401.label Connecting and filling vertices in path at fillseed 80242 Finding path........................................................................................................................................................................................................................................................................................................ done Filling 80242 nlabel 9868 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035501.label Connecting and filling vertices in path at fillseed 77503 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 77503 nlabel 13377 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035601.label Connecting and filling vertices in path at fillseed 82237 Finding path................................................................................................................................................................ done Filling 82237 nlabel 6153 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035701.label Connecting and filling vertices in path at fillseed 80898 Finding path................................................................................................................................................................................................................................................................................. done Filling 80898 nlabel 7775 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035801.label Connecting and filling vertices in path at fillseed 81137 Finding path........................................................................................................................................................................................................................................................................................................................................................ done Filling 81137 nlabel 10598 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035901.label Connecting and filling vertices in path at fillseed 81483 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 81483 nlabel 14289 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036001.label Connecting and filling vertices in path at fillseed 79932 Finding path...................................................................................................................................................... done Filling 79932 nlabel 3937 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036101.label Connecting and filling vertices in path at fillseed 80800 Finding path........................................................................................................................................................................................................................................................................................ done Filling 80800 nlabel 7437 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036201.label Connecting and filling vertices in path at fillseed 84174 Finding path..................................................................................................................................................................................................................................................................................................................................... done Filling 84174 nlabel 8075 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036301.label Connecting and filling vertices in path at fillseed 82447 Finding path....................................................................................................................................................................................................................................................................................... done Filling 82447 nlabel 9690 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036401.label Connecting and filling vertices in path at fillseed 79569 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 79569 nlabel 13707 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036501.label Connecting and filling vertices in path at fillseed 83480 Finding path.................................................................................................................................................... done Filling 83480 nlabel 5598 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036601.label Connecting and filling vertices in path at fillseed 84150 Finding path..................................................................................................................................................................................................................................................................................................................................................... done Filling 84150 nlabel 7635 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036701.label Connecting and filling vertices in path at fillseed 84333 Finding path.............................................................................................................................................................................................................................................................................................................. done Filling 84333 nlabel 11394 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036801.label Connecting and filling vertices in path at fillseed 83539 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 83539 nlabel 12949 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036901.label Connecting and filling vertices in path at fillseed 83199 Finding path........................................................................................................................................ done Filling 83199 nlabel 5007 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037001.label Connecting and filling vertices in path at fillseed 82970 Finding path................................................................................................................................................................................................................................................................................................................... done Filling 82970 nlabel 7272 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037101.label Connecting and filling vertices in path at fillseed 84284 Finding path.................................................................................................................................................................................................................................................................................................... done Filling 84284 nlabel 7915 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037201.label Connecting and filling vertices in path at fillseed 85256 Finding path.................................................................................................................................................................................... done Filling 85256 nlabel 4313 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037301.label Connecting and filling vertices in path at fillseed 84884 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 84884 nlabel 13273 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037401.label Connecting and filling vertices in path at fillseed 85733 Finding path.................................................................................................................................................................................................... done Filling 85733 nlabel 4061 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037501.label Connecting and filling vertices in path at fillseed 79965 Finding path.......................................................................................................................................................... done Filling 79965 nlabel 7497 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037601.label Connecting and filling vertices in path at fillseed 87558 Finding path.................................................................................................................................................................................................................................................................................... done Filling 87558 nlabel 11824 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037701.label Connecting and filling vertices in path at fillseed 86842 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 86842 nlabel 15049 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037801.label Connecting and filling vertices in path at fillseed 85547 Finding path................................................................................................................................................... done Filling 85547 nlabel 5728 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037901.label Connecting and filling vertices in path at fillseed 83175 Finding path........................................................................................................................................................................... done Filling 83175 nlabel 6422 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038001.label Connecting and filling vertices in path at fillseed 85322 Finding path............................................................................................................................................................................................................................................................................................................................................ done Filling 85322 nlabel 8271 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038101.label Connecting and filling vertices in path at fillseed 86319 Finding path........................................................................................................................................................................................................ done Filling 86319 nlabel 4676 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038201.label Connecting and filling vertices in path at fillseed 85986 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 85986 nlabel 12696 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038301.label Connecting and filling vertices in path at fillseed 87990 Finding path...................................................................................................................... done Filling 87990 nlabel 3762 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038401.label Connecting and filling vertices in path at fillseed 84250 Finding path....................................................................................................................................................................... done Filling 84250 nlabel 7350 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038501.label Connecting and filling vertices in path at fillseed 87567 Finding path......................................................................................................................................................................................................................................................................................................................... done Filling 87567 nlabel 11866 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038601.label Connecting and filling vertices in path at fillseed 86815 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 86815 nlabel 15538 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038701.label Connecting and filling vertices in path at fillseed 87732 Finding path.............................................................................................................................................................. done Filling 87732 nlabel 4845 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038801.label Connecting and filling vertices in path at fillseed 87328 Finding path........................................................................................................................................................................................................................................................................................................ done Filling 87328 nlabel 7399 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038901.label Connecting and filling vertices in path at fillseed 87532 Finding path.................................................................................................................................................................................................................................................................................................... done Filling 87532 nlabel 11490 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039001.label Connecting and filling vertices in path at fillseed 86712 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 86712 nlabel 12898 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039101.label Connecting and filling vertices in path at fillseed 88445 Finding path....................................................................................................................... done Filling 88445 nlabel 5241 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039201.label Connecting and filling vertices in path at fillseed 86143 Finding path............................................................................................................................................................................................................................................................................................................................... done Filling 86143 nlabel 7776 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039301.label Connecting and filling vertices in path at fillseed 86411 Finding path.......................................................................................................................................................................................................................................................................................................................................... done Filling 86411 nlabel 8246 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039401.label Connecting and filling vertices in path at fillseed 88374 Finding path................................................................................................................................................................................. done Filling 88374 nlabel 4935 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039501.label Connecting and filling vertices in path at fillseed 88257 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 88257 nlabel 6474 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039601.label Connecting and filling vertices in path at fillseed 90925 Finding path....................................................................................................................................................................................................................................................................................................... done Filling 90925 nlabel 7417 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039701.label Connecting and filling vertices in path at fillseed 86369 Finding path.................................................................................................................................................................... done Filling 86369 nlabel 7252 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039801.label Connecting and filling vertices in path at fillseed 93242 Finding path.......................................................................................................... done Filling 93242 nlabel 4503 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039901.label Connecting and filling vertices in path at fillseed 89840 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 89840 nlabel 14816 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040001.label Connecting and filling vertices in path at fillseed 90657 Finding path.................................................................................................................................................................................... done Filling 90657 nlabel 5082 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040101.label Connecting and filling vertices in path at fillseed 92112 Finding path.................................................................................................................................................................................................................................................................................................................................... done Filling 92112 nlabel 7375 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040201.label Connecting and filling vertices in path at fillseed 96174 Finding path.................................................................................................................. done Filling 96174 nlabel 4431 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040301.label Connecting and filling vertices in path at fillseed 89629 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 89629 nlabel 12168 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040401.label Connecting and filling vertices in path at fillseed 92791 Finding path...................................................................................................................... done Filling 92791 nlabel 3517 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040501.label Connecting and filling vertices in path at fillseed 93010 Finding path................................................................................................................................................................................................................................................................................................................................................... done Filling 93010 nlabel 7588 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040601.label Connecting and filling vertices in path at fillseed 129798 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 129798 nlabel 6754 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040701.label Connecting and filling vertices in path at fillseed 92364 Finding path.................................................................................................................................................................................................................................................................................................................................. done Filling 92364 nlabel 10574 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040801.label Connecting and filling vertices in path at fillseed 88800 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 88800 nlabel 13667 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040901.label Connecting and filling vertices in path at fillseed 92571 Finding path................................................................................................................................................. done Filling 92571 nlabel 4525 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041001.label Connecting and filling vertices in path at fillseed 94144 Finding path............................................................................................................................................................................................................................................................................................................................................................. done Filling 94144 nlabel 7709 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041101.label Connecting and filling vertices in path at fillseed 97117 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 97117 nlabel 3974 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041201.label Connecting and filling vertices in path at fillseed 92182 Finding path............................................................................................................................................... done Filling 92182 nlabel 4195 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041301.label Connecting and filling vertices in path at fillseed 91058 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 91058 nlabel 12503 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041401.label Connecting and filling vertices in path at fillseed 90310 Finding path............................................................................................................................................................................................................................ done Filling 90310 nlabel 6440 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041501.label Connecting and filling vertices in path at fillseed 96293 Finding path................................................................................................................................................................................................................................................................................. done Filling 96293 nlabel 7978 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041601.label Connecting and filling vertices in path at fillseed 93380 Finding path................................................................................................................................................................................................................................................................................................................. done Filling 93380 nlabel 10056 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041701.label Connecting and filling vertices in path at fillseed 94885 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 94885 nlabel 12830 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041801.label Connecting and filling vertices in path at fillseed 95706 Finding path........................................................................................ done Filling 95706 nlabel 3509 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041901.label Connecting and filling vertices in path at fillseed 95143 Finding path................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 95143 nlabel 6984 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042001.label Connecting and filling vertices in path at fillseed 96353 Finding path....................................................................................................................................................................................................................................................................................................................................... done Filling 96353 nlabel 10793 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042101.label Connecting and filling vertices in path at fillseed 92726 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 92726 nlabel 15213 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042201.label Connecting and filling vertices in path at fillseed 95764 Finding path.................................................................................................. done Filling 95764 nlabel 3548 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042301.label Connecting and filling vertices in path at fillseed 94137 Finding path................................................................................................................................................................................................................................................................................................................................................ done Filling 94137 nlabel 7580 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042401.label Connecting and filling vertices in path at fillseed 96265 Finding path....................................................................................................................................................................................................................................................................................................................... done Filling 96265 nlabel 11006 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042501.label Connecting and filling vertices in path at fillseed 93636 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 93636 nlabel 15546 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042601.label Connecting and filling vertices in path at fillseed 93085 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 93085 nlabel 9337 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042701.label Connecting and filling vertices in path at fillseed 96725 Finding path...................................................................................................... done Filling 96725 nlabel 3606 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042801.label Connecting and filling vertices in path at fillseed 96202 Finding path................................................................................................................................................................................................................ done Filling 96202 nlabel 7056 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042901.label Connecting and filling vertices in path at fillseed 97331 Finding path.................................................................................................................................................................................................................................................................................................................................... done Filling 97331 nlabel 10421 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043001.label Connecting and filling vertices in path at fillseed 93767 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 93767 nlabel 12375 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043101.label Connecting and filling vertices in path at fillseed 98491 Finding path.............................................................................................................. done Filling 98491 nlabel 4021 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043201.label Connecting and filling vertices in path at fillseed 97173 Finding path............................................................................................................................................................................................ done Filling 97173 nlabel 5875 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043301.label Connecting and filling vertices in path at fillseed 96434 Finding path....................................................................................................................................................................................................................................................................... done Filling 96434 nlabel 10077 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043401.label Connecting and filling vertices in path at fillseed 97968 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 97968 nlabel 4579 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043501.label Connecting and filling vertices in path at fillseed 99324 Finding path.................................................................................................................. done Filling 99324 nlabel 4542 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043601.label Connecting and filling vertices in path at fillseed 97037 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 97037 nlabel 7600 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043701.label Connecting and filling vertices in path at fillseed 98212 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 98212 nlabel 10748 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043801.label Connecting and filling vertices in path at fillseed 99322 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 99322 nlabel 16145 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043901.label Connecting and filling vertices in path at fillseed 98146 Finding path.............................................................................................................................................. done Filling 98146 nlabel 5291 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044001.label Connecting and filling vertices in path at fillseed 99567 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 99567 nlabel 7500 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044101.label Connecting and filling vertices in path at fillseed 98912 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 98912 nlabel 3798 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044201.label Connecting and filling vertices in path at fillseed 95211 Finding path............................................................................................................................................................ done Filling 95211 nlabel 4256 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044301.label Connecting and filling vertices in path at fillseed 97820 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 97820 nlabel 12338 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044401.label Connecting and filling vertices in path at fillseed 101070 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 101070 nlabel 6180 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044501.label Connecting and filling vertices in path at fillseed 98965 Finding path......................................................................................................................................................................................................... done Filling 98965 nlabel 6386 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044601.label Connecting and filling vertices in path at fillseed 98243 Finding path................................................................................................................................................................................................................................................................................................................................................................. done Filling 98243 nlabel 10658 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044701.label Connecting and filling vertices in path at fillseed 104006 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 104006 nlabel 12791 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044801.label Connecting and filling vertices in path at fillseed 100835 Finding path...................................................................................................................................................... done Filling 100835 nlabel 4634 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044901.label Connecting and filling vertices in path at fillseed 102742 Finding path............................................................................................................................................... done Filling 102742 nlabel 5210 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045001.label Connecting and filling vertices in path at fillseed 102700 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 102700 nlabel 5900 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045101.label Connecting and filling vertices in path at fillseed 102234 Finding path........................................................................................................................................................................................................................................................................................................ done Filling 102234 nlabel 10738 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045201.label Connecting and filling vertices in path at fillseed 101632 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 101632 nlabel 16015 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045301.label Connecting and filling vertices in path at fillseed 102460 Finding path........................................................................................................ done Filling 102460 nlabel 3583 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045401.label Connecting and filling vertices in path at fillseed 99662 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 99662 nlabel 6949 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045501.label Connecting and filling vertices in path at fillseed 98914 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 98914 nlabel 3748 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045601.label Connecting and filling vertices in path at fillseed 100801 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 100801 nlabel 11862 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045701.label Connecting and filling vertices in path at fillseed 102290 Finding path..................................................................................................................... done Filling 102290 nlabel 4678 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045801.label Connecting and filling vertices in path at fillseed 102738 Finding path........................................................................................................................ done Filling 102738 nlabel 4669 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045901.label Connecting and filling vertices in path at fillseed 103493 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 103493 nlabel 5770 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046001.label Connecting and filling vertices in path at fillseed 101995 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 101995 nlabel 3690 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046101.label Connecting and filling vertices in path at fillseed 103115 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 103115 nlabel 14560 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046201.label Connecting and filling vertices in path at fillseed 103520 Finding path............................................................................................................................................ done Filling 103520 nlabel 4814 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046301.label Connecting and filling vertices in path at fillseed 102756 Finding path........................................................................................................................................................................................................ done Filling 102756 nlabel 6357 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046401.label Connecting and filling vertices in path at fillseed 100624 Finding path.............................................................................................................................................................................................................................................................................. done Filling 100624 nlabel 10665 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046501.label Connecting and filling vertices in path at fillseed 98688 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 98688 nlabel 9893 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046601.label Connecting and filling vertices in path at fillseed 102275 Finding path.............................................................................................................. done Filling 102275 nlabel 4593 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046701.label Connecting and filling vertices in path at fillseed 102743 Finding path....................................................................................................................................................................................... done Filling 102743 nlabel 6735 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046801.label Connecting and filling vertices in path at fillseed 104977 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 104977 nlabel 4141 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046901.label Connecting and filling vertices in path at fillseed 129652 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 129652 nlabel 8738 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047001.label Connecting and filling vertices in path at fillseed 104326 Finding path................................................................................................................... done Filling 104326 nlabel 4946 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047101.label Connecting and filling vertices in path at fillseed 103513 Finding path...................................................................................................................................................................................................................................... done Filling 103513 nlabel 6146 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047201.label Connecting and filling vertices in path at fillseed 103544 Finding path............................................................................................................................................................................ done Filling 103544 nlabel 6478 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047301.label Connecting and filling vertices in path at fillseed 102697 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 102697 nlabel 4586 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047401.label Connecting and filling vertices in path at fillseed 101874 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 101874 nlabel 9424 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047501.label Connecting and filling vertices in path at fillseed 106115 Finding path............................................................................................................................................................................. done Filling 106115 nlabel 3784 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047601.label Connecting and filling vertices in path at fillseed 107838 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 107838 nlabel 6680 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047701.label Connecting and filling vertices in path at fillseed 104269 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 104269 nlabel 4258 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047801.label Connecting and filling vertices in path at fillseed 105222 Finding path............................................................................................................................................................................................................................................................................. done Filling 105222 nlabel 10138 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047901.label Connecting and filling vertices in path at fillseed 106176 Finding path........................................................................................................................................................................ done Filling 106176 nlabel 3702 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048001.label Connecting and filling vertices in path at fillseed 108561 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 108561 nlabel 6906 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048101.label Connecting and filling vertices in path at fillseed 105648 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 105648 nlabel 4271 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048201.label Connecting and filling vertices in path at fillseed 129733 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 129733 nlabel 8694 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048301.label Connecting and filling vertices in path at fillseed 106888 Finding path.............................................................................................................................. done Filling 106888 nlabel 5068 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048401.label Connecting and filling vertices in path at fillseed 104989 Finding path............................................................................................................................................................................. done Filling 104989 nlabel 5501 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048501.label Connecting and filling vertices in path at fillseed 106455 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 106455 nlabel 4011 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048601.label Connecting and filling vertices in path at fillseed 106365 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 106365 nlabel 8941 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048701.label Connecting and filling vertices in path at fillseed 107711 Finding path.................................................................................................................................... done Filling 107711 nlabel 4313 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048801.label Connecting and filling vertices in path at fillseed 108560 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 108560 nlabel 6691 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048901.label Connecting and filling vertices in path at fillseed 105791 Finding path............................................................................................................................................................................................................................................................................................... done Filling 105791 nlabel 8705 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049001.label Connecting and filling vertices in path at fillseed 129666 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 129666 nlabel 8847 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049101.label Connecting and filling vertices in path at fillseed 107514 Finding path....................................................................................................................................................................................... done Filling 107514 nlabel 5568 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049201.label Connecting and filling vertices in path at fillseed 106485 Finding path............................................................................................................................................................................... done Filling 106485 nlabel 5659 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049301.label Connecting and filling vertices in path at fillseed 106533 Finding path................................................................................................................................................................................................................................ done Filling 106533 nlabel 7615 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049401.label Connecting and filling vertices in path at fillseed 108155 Finding path................................................................................................................................................................................................................................................................ done Filling 108155 nlabel 10179 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049501.label Connecting and filling vertices in path at fillseed 106919 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 106919 nlabel 10274 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049601.label Connecting and filling vertices in path at fillseed 111010 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 111010 nlabel 5749 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049701.label Connecting and filling vertices in path at fillseed 107244 Finding path............................................................................................................................................................................................. done Filling 107244 nlabel 7078 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049801.label Connecting and filling vertices in path at fillseed 107320 Finding path............................................................................................................................................................................................................................................................................................................. done Filling 107320 nlabel 9775 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049901.label Connecting and filling vertices in path at fillseed 107129 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 107129 nlabel 8174 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050001.label Connecting and filling vertices in path at fillseed 109714 Finding path....................................................................................................................................................................................... done Filling 109714 nlabel 5358 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050101.label Connecting and filling vertices in path at fillseed 109862 Finding path........................................................................................................................................................................................................ done Filling 109862 nlabel 7072 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050201.label Connecting and filling vertices in path at fillseed 108010 Finding path..................................................................................................................................................................................................................................................................................................... done Filling 108010 nlabel 9803 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050301.label Connecting and filling vertices in path at fillseed 107126 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 107126 nlabel 8744 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050401.label Connecting and filling vertices in path at fillseed 109315 Finding path.................................................................................................................................................................... done Filling 109315 nlabel 4709 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050501.label Connecting and filling vertices in path at fillseed 111046 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 111046 nlabel 5047 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050601.label Connecting and filling vertices in path at fillseed 107914 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 107914 nlabel 5292 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050701.label Connecting and filling vertices in path at fillseed 107911 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 107911 nlabel 4097 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050801.label Connecting and filling vertices in path at fillseed 108262 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 108262 nlabel 10475 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050901.label Connecting and filling vertices in path at fillseed 111862 Finding path......................................................................................................................................... done Filling 111862 nlabel 5503 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051001.label Connecting and filling vertices in path at fillseed 112466 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 112466 nlabel 6148 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051101.label Connecting and filling vertices in path at fillseed 108725 Finding path.......................................................................................................................................................................................................................................................................................... done Filling 108725 nlabel 8709 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051201.label Connecting and filling vertices in path at fillseed 107862 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 107862 nlabel 7058 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051301.label Connecting and filling vertices in path at fillseed 110732 Finding path............................................................................................................................ done Filling 110732 nlabel 5649 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051401.label Connecting and filling vertices in path at fillseed 111067 Finding path............................................................................................................................................................................. done Filling 111067 nlabel 6067 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051501.label Connecting and filling vertices in path at fillseed 110540 Finding path.................................................................................................................................................................................................................................................................... done Filling 110540 nlabel 8258 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051601.label Connecting and filling vertices in path at fillseed 111349 Finding path...................................................................................................................................................................................................................................................................................................................... done Filling 111349 nlabel 8001 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051701.label Connecting and filling vertices in path at fillseed 111844 Finding path............................................................................................................................................................................. done Filling 111844 nlabel 4290 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051801.label Connecting and filling vertices in path at fillseed 111087 Finding path...................................................................................................................................................................................... done Filling 111087 nlabel 6326 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051901.label Connecting and filling vertices in path at fillseed 109915 Finding path................................................................................................................................................................................................................................................................................................................... done Filling 109915 nlabel 7746 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052001.label Connecting and filling vertices in path at fillseed 109246 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 109246 nlabel 7262 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052101.label Connecting and filling vertices in path at fillseed 112191 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 112191 nlabel 9683 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052201.label Connecting and filling vertices in path at fillseed 112479 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 112479 nlabel 5488 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052301.label Connecting and filling vertices in path at fillseed 112475 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 112475 nlabel 6016 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052401.label Connecting and filling vertices in path at fillseed 109838 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 109838 nlabel 6383 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052501.label Connecting and filling vertices in path at fillseed 129613 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 129613 nlabel 7468 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052601.label Connecting and filling vertices in path at fillseed 112699 Finding path......................................................................................................................................................................................................................................................................................... done Filling 112699 nlabel 8031 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052701.label Connecting and filling vertices in path at fillseed 111802 Finding path.............................................................................................................................. done Filling 111802 nlabel 4326 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052801.label Connecting and filling vertices in path at fillseed 114316 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 114316 nlabel 6520 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052901.label Connecting and filling vertices in path at fillseed 130157 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 130157 nlabel 8179 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053001.label Connecting and filling vertices in path at fillseed 129570 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 129570 nlabel 6439 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053101.label Connecting and filling vertices in path at fillseed 114873 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 114873 nlabel 9512 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053201.label Connecting and filling vertices in path at fillseed 113133 Finding path................................................................................................................................. done Filling 113133 nlabel 5195 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053301.label Connecting and filling vertices in path at fillseed 115090 Finding path................................................................................................................................................................. done Filling 115090 nlabel 6371 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053401.label Connecting and filling vertices in path at fillseed 113958 Finding path............................................................................................................................................................................................................................................................................................ done Filling 113958 nlabel 7144 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053501.label Connecting and filling vertices in path at fillseed 115684 Finding path....................................................................................................................................................................................................................................................................................................................................................................................... done Filling 115684 nlabel 5693 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053601.label Connecting and filling vertices in path at fillseed 113681 Finding path......................................................................................................................................................................................................... done Filling 113681 nlabel 6380 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053701.label Connecting and filling vertices in path at fillseed 116042 Finding path................................................................................................................................................................................................................................ done Filling 116042 nlabel 8514 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053801.label Connecting and filling vertices in path at fillseed 114011 Finding path........................................................................................ done Filling 114011 nlabel 5549 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053901.label Connecting and filling vertices in path at fillseed 130232 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 130232 nlabel 6745 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054001.label Connecting and filling vertices in path at fillseed 114613 Finding path.................................................................................................................................................................................................................................. done Filling 114613 nlabel 7213 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054101.label Connecting and filling vertices in path at fillseed 114086 Finding path............................................................................................................................................... done Filling 114086 nlabel 5774 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054201.label Connecting and filling vertices in path at fillseed 114993 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 114993 nlabel 6844 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054301.label Connecting and filling vertices in path at fillseed 116340 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 116340 nlabel 7552 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054401.label Connecting and filling vertices in path at fillseed 117066 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 117066 nlabel 5774 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054501.label Connecting and filling vertices in path at fillseed 115719 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 115719 nlabel 7299 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054601.label Connecting and filling vertices in path at fillseed 114954 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 114954 nlabel 7758 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054701.label Connecting and filling vertices in path at fillseed 116085 Finding path......................................................................................................................... done Filling 116085 nlabel 5857 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054801.label Connecting and filling vertices in path at fillseed 116470 Finding path.............................................................................................................................................................. done Filling 116470 nlabel 5905 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054901.label Connecting and filling vertices in path at fillseed 118050 Finding path............................................................................................................................................................................................. done Filling 118050 nlabel 7921 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055001.label Connecting and filling vertices in path at fillseed 115226 Finding path.............................................................................................................................. done Filling 115226 nlabel 5788 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055101.label Connecting and filling vertices in path at fillseed 117172 Finding path........................................................................................................................................................................................ done Filling 117172 nlabel 5747 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055201.label Connecting and filling vertices in path at fillseed 118458 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 118458 nlabel 7872 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055301.label Connecting and filling vertices in path at fillseed 115993 Finding path.................................................................................................................................................. done Filling 115993 nlabel 5963 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055401.label Connecting and filling vertices in path at fillseed 117168 Finding path........................................................................................................................................................................................................................................................................... done Filling 117168 nlabel 5946 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055501.label Connecting and filling vertices in path at fillseed 116422 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 116422 nlabel 6537 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055601.label Connecting and filling vertices in path at fillseed 116898 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 116898 nlabel 7561 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055701.label Connecting and filling vertices in path at fillseed 118488 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 118488 nlabel 5951 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055801.label Connecting and filling vertices in path at fillseed 118625 Finding path................................................................................................................................................................................. done Filling 118625 nlabel 7480 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055901.label Connecting and filling vertices in path at fillseed 119079 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 119079 nlabel 7822 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056001.label Connecting and filling vertices in path at fillseed 119736 Finding path.............................................................................................................................. done Filling 119736 nlabel 4976 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056101.label Connecting and filling vertices in path at fillseed 118562 Finding path...................................................................................................................................................................................................................................... done Filling 118562 nlabel 5920 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056201.label Connecting and filling vertices in path at fillseed 120140 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 120140 nlabel 5901 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056301.label Connecting and filling vertices in path at fillseed 117609 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 117609 nlabel 8143 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056401.label Connecting and filling vertices in path at fillseed 118165 Finding path................................................................................................................... done Filling 118165 nlabel 5776 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056501.label Connecting and filling vertices in path at fillseed 117913 Finding path.............................................................................................................................................................................. done Filling 117913 nlabel 7663 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056601.label Connecting and filling vertices in path at fillseed 119630 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 119630 nlabel 7871 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056701.label Connecting and filling vertices in path at fillseed 119741 Finding path............................................................................................................................... done Filling 119741 nlabel 5182 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056801.label Connecting and filling vertices in path at fillseed 121806 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 121806 nlabel 6249 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056901.label Connecting and filling vertices in path at fillseed 119818 Finding path.................................................................................................................................................................... done Filling 119818 nlabel 8373 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057001.label Connecting and filling vertices in path at fillseed 119470 Finding path................................................................................................................ done Filling 119470 nlabel 5718 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057101.label Connecting and filling vertices in path at fillseed 121799 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 121799 nlabel 5069 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057201.label Connecting and filling vertices in path at fillseed 121366 Finding path........................................................................................................................................................................... done Filling 121366 nlabel 8333 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057301.label Connecting and filling vertices in path at fillseed 120146 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 120146 nlabel 8522 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057401.label Connecting and filling vertices in path at fillseed 123779 Finding path............................................................................................................................................... done Filling 123779 nlabel 6095 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057501.label Connecting and filling vertices in path at fillseed 120670 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 120670 nlabel 7153 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057601.label Connecting and filling vertices in path at fillseed 130269 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 130269 nlabel 8067 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057701.label Connecting and filling vertices in path at fillseed 121285 Finding path............................................................................................................................ done Filling 121285 nlabel 4682 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057801.label Connecting and filling vertices in path at fillseed 121316 Finding path........................................................................................................................................................................................... done Filling 121316 nlabel 7622 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057901.label Connecting and filling vertices in path at fillseed 122014 Finding path..................................................................................................................................................................................................... done Filling 122014 nlabel 6503 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058001.label Connecting and filling vertices in path at fillseed 123344 Finding path................................................................................................................................... done Filling 123344 nlabel 4468 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058101.label Connecting and filling vertices in path at fillseed 122785 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 122785 nlabel 7553 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058201.label Connecting and filling vertices in path at fillseed 122662 Finding path........................................................................................................................................................................................ done Filling 122662 nlabel 6574 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058301.label Connecting and filling vertices in path at fillseed 122331 Finding path...................................................................................................................................................................................................................................................... done Filling 122331 nlabel 4616 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058401.label Connecting and filling vertices in path at fillseed 122399 Finding path................................................................................................................................................................................... done Filling 122399 nlabel 8241 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058501.label Connecting and filling vertices in path at fillseed 124022 Finding path........................................................................................................................... done Filling 124022 nlabel 5983 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058601.label Connecting and filling vertices in path at fillseed 123381 Finding path.................................................................................................................................................................................... done Filling 123381 nlabel 7665 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058701.label Connecting and filling vertices in path at fillseed 123027 Finding path...................................................................................................................................................................................... done Filling 123027 nlabel 6553 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058801.label Connecting and filling vertices in path at fillseed 123912 Finding path....................................................................................................................................... done Filling 123912 nlabel 5044 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058901.label Connecting and filling vertices in path at fillseed 122387 Finding path............................................................................................................................................................................................................................................................................. done Filling 122387 nlabel 6809 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059001.label Connecting and filling vertices in path at fillseed 124660 Finding path...................................................................................................................................................................... done Filling 124660 nlabel 6562 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059101.label Connecting and filling vertices in path at fillseed 125825 Finding path....................................................................................................................................................... done Filling 125825 nlabel 4754 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059201.label Connecting and filling vertices in path at fillseed 123494 Finding path........................................................................................................................................................................................................................................................................................................................ done Filling 123494 nlabel 7191 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059301.label Connecting and filling vertices in path at fillseed 125424 Finding path........................................................................................................ done Filling 125424 nlabel 5549 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059401.label Connecting and filling vertices in path at fillseed 124875 Finding path.............................................................................................................................................................................................. done Filling 124875 nlabel 7357 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059501.label Connecting and filling vertices in path at fillseed 124531 Finding path............................................................................................................................................................................................. done Filling 124531 nlabel 6101 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059601.label Connecting and filling vertices in path at fillseed 124858 Finding path............................................................................................................................. done Filling 124858 nlabel 4497 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059701.label Connecting and filling vertices in path at fillseed 123944 Finding path........................................................................................................................................................................................................................................ done Filling 123944 nlabel 6871 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059801.label Connecting and filling vertices in path at fillseed 125061 Finding path......................................................................................................................................................................................... done Filling 125061 nlabel 6070 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059901.label Connecting and filling vertices in path at fillseed 125345 Finding path............................................................................................................... done Filling 125345 nlabel 4478 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060001.label Connecting and filling vertices in path at fillseed 125901 Finding path........................................................................................................................................................................... done Filling 125901 nlabel 6161 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060101.label Connecting and filling vertices in path at fillseed 126291 Finding path..................................................................................................................................... done Filling 126291 nlabel 4924 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060201.label Connecting and filling vertices in path at fillseed 125353 Finding path.................................................................................................................................................................................. done Filling 125353 nlabel 5508 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060301.label Connecting and filling vertices in path at fillseed 125021 Finding path..................................................................................................................................................................................................... done Filling 125021 nlabel 6344 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060401.label Connecting and filling vertices in path at fillseed 127053 Finding path............................................................................................................................. done Filling 127053 nlabel 5161 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060501.label Connecting and filling vertices in path at fillseed 126263 Finding path........................................................................................................................................................................................................... done Filling 126263 nlabel 6560 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060601.label Connecting and filling vertices in path at fillseed 125500 Finding path...................................................................................................................................................................................... done Filling 125500 nlabel 6113 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060701.label Connecting and filling vertices in path at fillseed 126645 Finding path...................................................................................................... done Filling 126645 nlabel 4504 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060801.label Connecting and filling vertices in path at fillseed 125400 Finding path...................................................................................................................................................................................................... done Filling 125400 nlabel 7277 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060901.label Connecting and filling vertices in path at fillseed 126542 Finding path............................................................................................................................................ done Filling 126542 nlabel 5339 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061001.label Connecting and filling vertices in path at fillseed 127777 Finding path................................................................................................................................................... done Filling 127777 nlabel 4686 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061101.label Connecting and filling vertices in path at fillseed 126968 Finding path................................................................................................................................................................................................. done Filling 126968 nlabel 6878 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061201.label Connecting and filling vertices in path at fillseed 127084 Finding path.............................................................................................................................................................. done Filling 127084 nlabel 5579 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061301.label Connecting and filling vertices in path at fillseed 127953 Finding path.............................................................................................................................................................. done Filling 127953 nlabel 4750 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061401.label Connecting and filling vertices in path at fillseed 126287 Finding path....................................................................................................................................................................... done Filling 126287 nlabel 6816 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061501.label Connecting and filling vertices in path at fillseed 126692 Finding path................................................................................................................................................................................................. done Filling 126692 nlabel 5471 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061601.label Connecting and filling vertices in path at fillseed 128207 Finding path............................................................................................................................... done Filling 128207 nlabel 4410 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061701.label Connecting and filling vertices in path at fillseed 127324 Finding path............................................................................................................................................. done Filling 127324 nlabel 5712 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061801.label Connecting and filling vertices in path at fillseed 127256 Finding path...................................................................................................................................... done Filling 127256 nlabel 4935 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061901.label Connecting and filling vertices in path at fillseed 127560 Finding path.......................................................................................................................................................................... done Filling 127560 nlabel 6876 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062001.label Connecting and filling vertices in path at fillseed 127402 Finding path........................................................................................................................................................................ done Filling 127402 nlabel 5438 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062101.label Connecting and filling vertices in path at fillseed 128230 Finding path............................................................................................................................... done Filling 128230 nlabel 4173 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062201.label Connecting and filling vertices in path at fillseed 127928 Finding path............................................................................................................................................................................... done Filling 127928 nlabel 5727 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062301.label Connecting and filling vertices in path at fillseed 128096 Finding path....................................................................................................................................... done Filling 128096 nlabel 4938 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062401.label Connecting and filling vertices in path at fillseed 127857 Finding path................................................................................................................................................................... done Filling 127857 nlabel 6918 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062501.label Connecting and filling vertices in path at fillseed 128278 Finding path............................................................................................................................................ done Filling 128278 nlabel 4784 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062601.label Connecting and filling vertices in path at fillseed 128109 Finding path.................................................................................................................................................................................. done Filling 128109 nlabel 6089 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062701.label Connecting and filling vertices in path at fillseed 128121 Finding path......................................................................................................................................................................................................................................... done Filling 128121 nlabel 6572 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062801.label Connecting and filling vertices in path at fillseed 128420 Finding path........................................................................................................................................................ done Filling 128420 nlabel 5003 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062901.label Connecting and filling vertices in path at fillseed 128136 Finding path...................................................................................................................................................................................................... done Filling 128136 nlabel 5516 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.063001.label Connecting and filling vertices in path at fillseed 128323 Finding path....................................................................................................................................................................... done Filling 128323 nlabel 6064 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.063101.label ================= compute_lgi('lh.pial','lh.pial-outer-smoothed','/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc',100,25,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial'); exit ================= 2015-12-15 03:00:25.241 MATLAB_maci64[29472:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> loading datas ... FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.02 sec) FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.02 sec) preparing outer mesh structure ... face 5000 / 126272 face 10000 / 126272 face 15000 / 126272 face 20000 / 126272 face 25000 / 126272 face 30000 / 126272 face 35000 / 126272 face 40000 / 126272 face 45000 / 126272 face 50000 / 126272 face 55000 / 126272 face 60000 / 126272 face 65000 / 126272 face 70000 / 126272 face 75000 / 126272 face 80000 / 126272 face 85000 / 126272 face 90000 / 126272 face 95000 / 126272 face 100000 / 126272 face 105000 / 126272 face 110000 / 126272 face 115000 / 126272 face 120000 / 126272 face 125000 / 126272 reading normals info ... mesh_outer = vertices: [63138x3 double] faces: [126272x3 double] facesOfVertex: [63138x1 struct] vertexNormal: [63138x3 double] preparing pial mesh structure ... face 5000 / 260558 face 10000 / 260558 face 15000 / 260558 face 20000 / 260558 face 25000 / 260558 face 30000 / 260558 face 35000 / 260558 face 40000 / 260558 face 45000 / 260558 face 50000 / 260558 face 55000 / 260558 face 60000 / 260558 face 65000 / 260558 face 70000 / 260558 face 75000 / 260558 face 80000 / 260558 face 85000 / 260558 face 90000 / 260558 face 95000 / 260558 face 100000 / 260558 face 105000 / 260558 face 110000 / 260558 face 115000 / 260558 face 120000 / 260558 face 125000 / 260558 face 130000 / 260558 face 135000 / 260558 face 140000 / 260558 face 145000 / 260558 face 150000 / 260558 face 155000 / 260558 face 160000 / 260558 face 165000 / 260558 face 170000 / 260558 face 175000 / 260558 face 180000 / 260558 face 185000 / 260558 face 190000 / 260558 face 195000 / 260558 face 200000 / 260558 face 205000 / 260558 face 210000 / 260558 face 215000 / 260558 face 220000 / 260558 face 225000 / 260558 face 230000 / 260558 face 235000 / 260558 face 240000 / 260558 face 245000 / 260558 face 250000 / 260558 face 255000 / 260558 face 260000 / 260558 mesh_total = vertices: [130281x3 double] faces: [260558x3 double] facesOfVertex: [130281x1 struct] ...searching for mesh edges...done (186.55 sec). loading outer area information... lGI for vertex number 1 of the outer mesh is 1.9527 ratio saved at 1 lGI for vertex number 101 of the outer mesh is 1.8748 lGI for vertex number 201 of the outer mesh is 1.8507 lGI for vertex number 301 of the outer mesh is 2.0697 lGI for vertex number 401 of the outer mesh is 1.7995 lGI for vertex number 501 of the outer mesh is 2.5426 lGI for vertex number 601 of the outer mesh is 1.9728 lGI for vertex number 701 of the outer mesh is 2.1417 lGI for vertex number 801 of the outer mesh is 2.7693 lGI for vertex number 901 of the outer mesh is 1.7656 lGI for vertex number 1001 of the outer mesh is 1.9935 lGI for vertex number 1101 of the outer mesh is 2.6218 lGI for vertex number 1201 of the outer mesh is 3.0589 lGI for vertex number 1301 of the outer mesh is 2.6906 lGI for vertex number 1401 of the outer mesh is 2.3828 lGI for vertex number 1501 of the outer mesh is 1.7279 lGI for vertex number 1601 of the outer mesh is 2.6864 lGI for vertex number 1701 of the outer mesh is 2.005 lGI for vertex number 1801 of the outer mesh is 2.9982 lGI for vertex number 1901 of the outer mesh is 2.4685 lGI for vertex number 2001 of the outer mesh is 2.8088 lGI for vertex number 2101 of the outer mesh is 2.0058 lGI for vertex number 2201 of the outer mesh is 1.7176 lGI for vertex number 2301 of the outer mesh is 2.7068 lGI for vertex number 2401 of the outer mesh is 2.0086 lGI for vertex number 2501 of the outer mesh is 1.9878 lGI for vertex number 2601 of the outer mesh is 1.7384 lGI for vertex number 2701 of the outer mesh is 2.7409 lGI for vertex number 2801 of the outer mesh is 2.67 lGI for vertex number 2901 of the outer mesh is 2.229 lGI for vertex number 3001 of the outer mesh is 1.7312 lGI for vertex number 3101 of the outer mesh is 2.666 lGI for vertex number 3201 of the outer mesh is 2.0041 lGI for vertex number 3301 of the outer mesh is 2.8552 lGI for vertex number 3401 of the outer mesh is 2.3658 lGI for vertex number 3501 of the outer mesh is 2.1909 lGI for vertex number 3601 of the outer mesh is 1.6303 lGI for vertex number 3701 of the outer mesh is 2.8416 lGI for vertex number 3801 of the outer mesh is 2.8119 lGI for vertex number 3901 of the outer mesh is 2.4534 lGI for vertex number 4001 of the outer mesh is 1.9303 lGI for vertex number 4101 of the outer mesh is 1.6611 lGI for vertex number 4201 of the outer mesh is 1.986 lGI for vertex number 4301 of the outer mesh is 3.2609 lGI for vertex number 4401 of the outer mesh is 1.8516 lGI for vertex number 4501 of the outer mesh is 1.8285 lGI for vertex number 4601 of the outer mesh is 2.8472 lGI for vertex number 4701 of the outer mesh is 2.2599 lGI for vertex number 4801 of the outer mesh is 3.2478 lGI for vertex number 4901 of the outer mesh is 1.7269 lGI for vertex number 5001 of the outer mesh is 2.7326 lGI for vertex number 5101 of the outer mesh is 2.9225 lGI for vertex number 5201 of the outer mesh is 2.8119 lGI for vertex number 5301 of the outer mesh is 2.6647 lGI for vertex number 5401 of the outer mesh is 1.8733 lGI for vertex number 5501 of the outer mesh is 2.8761 lGI for vertex number 5601 of the outer mesh is 2.5801 lGI for vertex number 5701 of the outer mesh is 1.7664 lGI for vertex number 5801 of the outer mesh is 1.6927 lGI for vertex number 5901 of the outer mesh is 2.6911 lGI for vertex number 6001 of the outer mesh is 2.3855 lGI for vertex number 6101 of the outer mesh is 3.1274 lGI for vertex number 6201 of the outer mesh is 2.1728 lGI for vertex number 6301 of the outer mesh is 2.0509 lGI for vertex number 6401 of the outer mesh is 2.7407 lGI for vertex number 6501 of the outer mesh is 3.1085 lGI for vertex number 6601 of the outer mesh is 2.1718 lGI for vertex number 6701 of the outer mesh is 1.9313 lGI for vertex number 6801 of the outer mesh is 2.4768 lGI for vertex number 6901 of the outer mesh is 2.1364 lGI for vertex number 7001 of the outer mesh is 2.899 lGI for vertex number 7101 of the outer mesh is 2.589 lGI for vertex number 7201 of the outer mesh is 1.7708 lGI for vertex number 7301 of the outer mesh is 2.8116 lGI for vertex number 7401 of the outer mesh is 3.2078 lGI for vertex number 7501 of the outer mesh is 2.7839 lGI for vertex number 7601 of the outer mesh is 1.8344 lGI for vertex number 7701 of the outer mesh is 3.208 lGI for vertex number 7801 of the outer mesh is 2.7935 lGI for vertex number 7901 of the outer mesh is 2.4979 lGI for vertex number 8001 of the outer mesh is 2.4937 lGI for vertex number 8101 of the outer mesh is 2.2816 lGI for vertex number 8201 of the outer mesh is 3.094 lGI for vertex number 8301 of the outer mesh is 2.5456 lGI for vertex number 8401 of the outer mesh is 1.9279 lGI for vertex number 8501 of the outer mesh is 2.2001 lGI for vertex number 8601 of the outer mesh is 2.8408 lGI for vertex number 8701 of the outer mesh is 2.3688 lGI for vertex number 8801 of the outer mesh is 2.0236 lGI for vertex number 8901 of the outer mesh is 2.0126 lGI for vertex number 9001 of the outer mesh is 2.4996 lGI for vertex number 9101 of the outer mesh is 2.4875 lGI for vertex number 9201 of the outer mesh is 2.6843 lGI for vertex number 9301 of the outer mesh is 2.052 lGI for vertex number 9401 of the outer mesh is 3.1845 lGI for vertex number 9501 of the outer mesh is 2.7429 lGI for vertex number 9601 of the outer mesh is 2.3184 lGI for vertex number 9701 of the outer mesh is 2.0252 lGI for vertex number 9801 of the outer mesh is 2.0052 lGI for vertex number 9901 of the outer mesh is 2.4399 lGI for vertex number 10001 of the outer mesh is 2.8365 ratio saved at 10001 lGI for vertex number 10101 of the outer mesh is 2.7724 lGI for vertex number 10201 of the outer mesh is 1.7788 lGI for vertex number 10301 of the outer mesh is 2.8802 lGI for vertex number 10401 of the outer mesh is 2.9383 lGI for vertex number 10501 of the outer mesh is 2.319 lGI for vertex number 10601 of the outer mesh is 1.7266 lGI for vertex number 10701 of the outer mesh is 2.4237 lGI for vertex number 10801 of the outer mesh is 3.0747 lGI for vertex number 10901 of the outer mesh is 2.9349 lGI for vertex number 11001 of the outer mesh is 2.8121 lGI for vertex number 11101 of the outer mesh is 1.8932 lGI for vertex number 11201 of the outer mesh is 2.5576 lGI for vertex number 11301 of the outer mesh is 3.0134 lGI for vertex number 11401 of the outer mesh is 2.3701 lGI for vertex number 11501 of the outer mesh is 1.8342 lGI for vertex number 11601 of the outer mesh is 2.6975 lGI for vertex number 11701 of the outer mesh is 2.9087 lGI for vertex number 11801 of the outer mesh is 2.9767 lGI for vertex number 11901 of the outer mesh is 2.7977 lGI for vertex number 12001 of the outer mesh is 1.8359 lGI for vertex number 12101 of the outer mesh is 2.8869 lGI for vertex number 12201 of the outer mesh is 2.9226 lGI for vertex number 12301 of the outer mesh is 2.4036 lGI for vertex number 12401 of the outer mesh is 2.3883 lGI for vertex number 12501 of the outer mesh is 2.7493 lGI for vertex number 12601 of the outer mesh is 2.9042 lGI for vertex number 12701 of the outer mesh is 3.1372 lGI for vertex number 12801 of the outer mesh is 2.8827 lGI for vertex number 12901 of the outer mesh is 2.1571 lGI for vertex number 13001 of the outer mesh is 2.8784 lGI for vertex number 13101 of the outer mesh is 3.0209 lGI for vertex number 13201 of the outer mesh is 3.0396 lGI for vertex number 13301 of the outer mesh is 2.2637 lGI for vertex number 13401 of the outer mesh is 2.7612 lGI for vertex number 13501 of the outer mesh is 2.5007 lGI for vertex number 13601 of the outer mesh is 3.1207 lGI for vertex number 13701 of the outer mesh is 2.7243 lGI for vertex number 13801 of the outer mesh is 2.1431 lGI for vertex number 13901 of the outer mesh is 2.0547 lGI for vertex number 14001 of the outer mesh is 2.6007 lGI for vertex number 14101 of the outer mesh is 2.1596 lGI for vertex number 14201 of the outer mesh is 1.8566 lGI for vertex number 14301 of the outer mesh is 2.0978 lGI for vertex number 14401 of the outer mesh is 2.3817 lGI for vertex number 14501 of the outer mesh is 3.0269 lGI for vertex number 14601 of the outer mesh is 2.8704 lGI for vertex number 14701 of the outer mesh is 1.8274 lGI for vertex number 14801 of the outer mesh is 2.8228 lGI for vertex number 14901 of the outer mesh is 2.5393 lGI for vertex number 15001 of the outer mesh is 2.0849 lGI for vertex number 15101 of the outer mesh is 2.1475 lGI for vertex number 15201 of the outer mesh is 2.1795 lGI for vertex number 15301 of the outer mesh is 2.7651 lGI for vertex number 15401 of the outer mesh is 3.1362 lGI for vertex number 15501 of the outer mesh is 2.747 lGI for vertex number 15601 of the outer mesh is 1.7951 lGI for vertex number 15701 of the outer mesh is 2.3339 lGI for vertex number 15801 of the outer mesh is 3.062 lGI for vertex number 15901 of the outer mesh is 3.4994 lGI for vertex number 16001 of the outer mesh is 2.8036 lGI for vertex number 16101 of the outer mesh is 2.0301 lGI for vertex number 16201 of the outer mesh is 2.1406 lGI for vertex number 16301 of the outer mesh is 2.95 lGI for vertex number 16401 of the outer mesh is 3.1153 lGI for vertex number 16501 of the outer mesh is 2.8381 lGI for vertex number 16601 of the outer mesh is 2.1447 lGI for vertex number 16701 of the outer mesh is 3.0464 lGI for vertex number 16801 of the outer mesh is 3.0992 lGI for vertex number 16901 of the outer mesh is 3.1085 lGI for vertex number 17001 of the outer mesh is 1.9877 lGI for vertex number 17101 of the outer mesh is 2.2673 lGI for vertex number 17201 of the outer mesh is 3.0741 lGI for vertex number 17301 of the outer mesh is 3.0109 lGI for vertex number 17401 of the outer mesh is 2.0719 lGI for vertex number 17501 of the outer mesh is 2.4259 lGI for vertex number 17601 of the outer mesh is 2.5292 lGI for vertex number 17701 of the outer mesh is 2.701 lGI for vertex number 17801 of the outer mesh is 2.2515 lGI for vertex number 17901 of the outer mesh is 2.8362 lGI for vertex number 18001 of the outer mesh is 2.2114 lGI for vertex number 18101 of the outer mesh is 1.7214 lGI for vertex number 18201 of the outer mesh is 2.709 lGI for vertex number 18301 of the outer mesh is 2.9793 lGI for vertex number 18401 of the outer mesh is 3.4432 lGI for vertex number 18501 of the outer mesh is 2.3171 lGI for vertex number 18601 of the outer mesh is 2.6377 lGI for vertex number 18701 of the outer mesh is 2.7009 lGI for vertex number 18801 of the outer mesh is 2.7512 lGI for vertex number 18901 of the outer mesh is 2.0492 lGI for vertex number 19001 of the outer mesh is 2.505 lGI for vertex number 19101 of the outer mesh is 2.2619 lGI for vertex number 19201 of the outer mesh is 3.0518 lGI for vertex number 19301 of the outer mesh is 2.8975 lGI for vertex number 19401 of the outer mesh is 1.6645 lGI for vertex number 19501 of the outer mesh is 2.2987 lGI for vertex number 19601 of the outer mesh is 2.5137 lGI for vertex number 19701 of the outer mesh is 3.0942 lGI for vertex number 19801 of the outer mesh is 2.5259 lGI for vertex number 19901 of the outer mesh is 2.2847 lGI for vertex number 20001 of the outer mesh is 3.0468 ratio saved at 20001 lGI for vertex number 20101 of the outer mesh is 3.9438 lGI for vertex number 20201 of the outer mesh is 2.1499 lGI for vertex number 20301 of the outer mesh is 2.2057 lGI for vertex number 20401 of the outer mesh is 2.2496 lGI for vertex number 20501 of the outer mesh is 2.5687 lGI for vertex number 20601 of the outer mesh is 2.6185 lGI for vertex number 20701 of the outer mesh is 1.9682 lGI for vertex number 20801 of the outer mesh is 1.7893 lGI for vertex number 20901 of the outer mesh is 2.5312 lGI for vertex number 21001 of the outer mesh is 2.6102 lGI for vertex number 21101 of the outer mesh is 2.7395 lGI for vertex number 21201 of the outer mesh is 2.4934 lGI for vertex number 21301 of the outer mesh is 2.3413 lGI for vertex number 21401 of the outer mesh is 2.2786 lGI for vertex number 21501 of the outer mesh is 2.9035 lGI for vertex number 21601 of the outer mesh is 2.3163 lGI for vertex number 21701 of the outer mesh is 2.6137 lGI for vertex number 21801 of the outer mesh is 2.7982 lGI for vertex number 21901 of the outer mesh is 3.7862 lGI for vertex number 22001 of the outer mesh is 1.9674 lGI for vertex number 22101 of the outer mesh is 2.492 lGI for vertex number 22201 of the outer mesh is 2.9423 lGI for vertex number 22301 of the outer mesh is 3.0541 lGI for vertex number 22401 of the outer mesh is 3.1186 lGI for vertex number 22501 of the outer mesh is 2.1998 lGI for vertex number 22601 of the outer mesh is 2.5996 lGI for vertex number 22701 of the outer mesh is 3.081 lGI for vertex number 22801 of the outer mesh is 2.6485 lGI for vertex number 22901 of the outer mesh is 1.652 lGI for vertex number 23001 of the outer mesh is 1.7441 lGI for vertex number 23101 of the outer mesh is 2.506 lGI for vertex number 23201 of the outer mesh is 2.9378 lGI for vertex number 23301 of the outer mesh is 3.7749 lGI for vertex number 23401 of the outer mesh is 2.0449 lGI for vertex number 23501 of the outer mesh is 2.273 lGI for vertex number 23601 of the outer mesh is 3.0939 lGI for vertex number 23701 of the outer mesh is 2.8939 lGI for vertex number 23801 of the outer mesh is 2.2847 lGI for vertex number 23901 of the outer mesh is 2.7607 lGI for vertex number 24001 of the outer mesh is 3.1493 lGI for vertex number 24101 of the outer mesh is 3.2385 lGI for vertex number 24201 of the outer mesh is 2.0093 lGI for vertex number 24301 of the outer mesh is 1.6399 lGI for vertex number 24401 of the outer mesh is 2.4185 lGI for vertex number 24501 of the outer mesh is 2.1467 lGI for vertex number 24601 of the outer mesh is 1.7034 lGI for vertex number 24701 of the outer mesh is 2.6874 lGI for vertex number 24801 of the outer mesh is 3.2532 lGI for vertex number 24901 of the outer mesh is 2.9269 lGI for vertex number 25001 of the outer mesh is 2.0767 lGI for vertex number 25101 of the outer mesh is 2.7255 lGI for vertex number 25201 of the outer mesh is 2.8921 lGI for vertex number 25301 of the outer mesh is 3.3511 lGI for vertex number 25401 of the outer mesh is 3.894 lGI for vertex number 25501 of the outer mesh is 2.248 lGI for vertex number 25601 of the outer mesh is 2.6467 lGI for vertex number 25701 of the outer mesh is 2.7782 lGI for vertex number 25801 of the outer mesh is 3.1518 lGI for vertex number 25901 of the outer mesh is 1.9627 lGI for vertex number 26001 of the outer mesh is 1.8262 lGI for vertex number 26101 of the outer mesh is 3.2126 lGI for vertex number 26201 of the outer mesh is 2.7723 lGI for vertex number 26301 of the outer mesh is 1.5697 lGI for vertex number 26401 of the outer mesh is 2.245 lGI for vertex number 26501 of the outer mesh is 2.2645 lGI for vertex number 26601 of the outer mesh is 2.5781 lGI for vertex number 26701 of the outer mesh is 1.4748 lGI for vertex number 26801 of the outer mesh is 1.4246 lGI for vertex number 26901 of the outer mesh is 2.5886 lGI for vertex number 27001 of the outer mesh is 2.1628 lGI for vertex number 27101 of the outer mesh is 4.5592 lGI for vertex number 27201 of the outer mesh is 2.0218 lGI for vertex number 27301 of the outer mesh is 2.4836 lGI for vertex number 27401 of the outer mesh is 3.0021 lGI for vertex number 27501 of the outer mesh is 3.3645 lGI for vertex number 27601 of the outer mesh is 2.0714 lGI for vertex number 27701 of the outer mesh is 2.1738 lGI for vertex number 27801 of the outer mesh is 2.5273 lGI for vertex number 27901 of the outer mesh is 2.2882 lGI for vertex number 28001 of the outer mesh is 1.2657 lGI for vertex number 28101 of the outer mesh is 1.9809 lGI for vertex number 28201 of the outer mesh is 2.9282 lGI for vertex number 28301 of the outer mesh is 2.4909 lGI for vertex number 28401 of the outer mesh is 2.949 lGI for vertex number 28501 of the outer mesh is 1.5094 lGI for vertex number 28601 of the outer mesh is 2.877 lGI for vertex number 28701 of the outer mesh is 2.6409 lGI for vertex number 28801 of the outer mesh is 4.0396 lGI for vertex number 28901 of the outer mesh is 2.0028 lGI for vertex number 29001 of the outer mesh is 2.0862 lGI for vertex number 29101 of the outer mesh is 2.8783 lGI for vertex number 29201 of the outer mesh is 3.2896 lGI for vertex number 29301 of the outer mesh is 2.926 lGI for vertex number 29401 of the outer mesh is 1.9366 lGI for vertex number 29501 of the outer mesh is 3.2752 lGI for vertex number 29601 of the outer mesh is 2.5196 lGI for vertex number 29701 of the outer mesh is 4.7509 lGI for vertex number 29801 of the outer mesh is 1.8997 lGI for vertex number 29901 of the outer mesh is 2.551 lGI for vertex number 30001 of the outer mesh is 2.7309 ratio saved at 30001 lGI for vertex number 30101 of the outer mesh is 4.0927 lGI for vertex number 30201 of the outer mesh is 1.9182 lGI for vertex number 30301 of the outer mesh is 1.9429 lGI for vertex number 30401 of the outer mesh is 3.092 lGI for vertex number 30501 of the outer mesh is 2.7774 lGI for vertex number 30601 of the outer mesh is 4.6978 lGI for vertex number 30701 of the outer mesh is 1.9515 lGI for vertex number 30801 of the outer mesh is 1.8691 lGI for vertex number 30901 of the outer mesh is 2.8161 lGI for vertex number 31001 of the outer mesh is 3.3464 lGI for vertex number 31101 of the outer mesh is 4.6039 lGI for vertex number 31201 of the outer mesh is 1.5834 lGI for vertex number 31301 of the outer mesh is 3.1372 lGI for vertex number 31401 of the outer mesh is 2.4163 lGI for vertex number 31501 of the outer mesh is 4.0155 lGI for vertex number 31601 of the outer mesh is 1.355 lGI for vertex number 31701 of the outer mesh is 2.4593 lGI for vertex number 31801 of the outer mesh is 3.1053 lGI for vertex number 31901 of the outer mesh is 3.1516 lGI for vertex number 32001 of the outer mesh is 3.9968 lGI for vertex number 32101 of the outer mesh is 1.9085 lGI for vertex number 32201 of the outer mesh is 2.7174 lGI for vertex number 32301 of the outer mesh is 2.1607 lGI for vertex number 32401 of the outer mesh is 3.9907 lGI for vertex number 32501 of the outer mesh is 1.7602 lGI for vertex number 32601 of the outer mesh is 2.4269 lGI for vertex number 32701 of the outer mesh is 2.5315 lGI for vertex number 32801 of the outer mesh is 2.6933 lGI for vertex number 32901 of the outer mesh is 4.6458 lGI for vertex number 33001 of the outer mesh is 1.7885 lGI for vertex number 33101 of the outer mesh is 2.4215 lGI for vertex number 33201 of the outer mesh is 3.11 lGI for vertex number 33301 of the outer mesh is 4.2865 lGI for vertex number 33401 of the outer mesh is 1.1988 lGI for vertex number 33501 of the outer mesh is 2.389 lGI for vertex number 33601 of the outer mesh is 2.8578 lGI for vertex number 33701 of the outer mesh is 2.9783 lGI for vertex number 33801 of the outer mesh is 2.6003 lGI for vertex number 33901 of the outer mesh is 1.7413 lGI for vertex number 34001 of the outer mesh is 2.4825 lGI for vertex number 34101 of the outer mesh is 2.7388 lGI for vertex number 34201 of the outer mesh is 4.1177 lGI for vertex number 34301 of the outer mesh is 1.6457 lGI for vertex number 34401 of the outer mesh is 2.51 lGI for vertex number 34501 of the outer mesh is 2.5435 lGI for vertex number 34601 of the outer mesh is 4.5145 lGI for vertex number 34701 of the outer mesh is 4.2241 lGI for vertex number 34801 of the outer mesh is 1.6069 lGI for vertex number 34901 of the outer mesh is 2.0002 lGI for vertex number 35001 of the outer mesh is 2.6913 lGI for vertex number 35101 of the outer mesh is 4.6235 lGI for vertex number 35201 of the outer mesh is 1.7614 lGI for vertex number 35301 of the outer mesh is 2.2468 lGI for vertex number 35401 of the outer mesh is 2.0397 lGI for vertex number 35501 of the outer mesh is 2.9119 lGI for vertex number 35601 of the outer mesh is 4.7854 lGI for vertex number 35701 of the outer mesh is 1.7025 lGI for vertex number 35801 of the outer mesh is 2.6532 lGI for vertex number 35901 of the outer mesh is 2.9904 lGI for vertex number 36001 of the outer mesh is 4.396 lGI for vertex number 36101 of the outer mesh is 1.516 lGI for vertex number 36201 of the outer mesh is 2.5238 lGI for vertex number 36301 of the outer mesh is 3.0236 lGI for vertex number 36401 of the outer mesh is 2.9177 lGI for vertex number 36501 of the outer mesh is 4.8835 lGI for vertex number 36601 of the outer mesh is 1.8376 lGI for vertex number 36701 of the outer mesh is 2.6911 lGI for vertex number 36801 of the outer mesh is 3.222 lGI for vertex number 36901 of the outer mesh is 3.9766 lGI for vertex number 37001 of the outer mesh is 1.6011 lGI for vertex number 37101 of the outer mesh is 2.5472 lGI for vertex number 37201 of the outer mesh is 2.3093 lGI for vertex number 37301 of the outer mesh is 1.9464 lGI for vertex number 37401 of the outer mesh is 4.7041 lGI for vertex number 37501 of the outer mesh is 1.4417 lGI for vertex number 37601 of the outer mesh is 1.9207 lGI for vertex number 37701 of the outer mesh is 3.3644 lGI for vertex number 37801 of the outer mesh is 4.9741 lGI for vertex number 37901 of the outer mesh is 1.823 lGI for vertex number 38001 of the outer mesh is 1.8027 lGI for vertex number 38101 of the outer mesh is 2.4073 lGI for vertex number 38201 of the outer mesh is 2.0228 lGI for vertex number 38301 of the outer mesh is 4.5275 lGI for vertex number 38401 of the outer mesh is 1.1624 lGI for vertex number 38501 of the outer mesh is 1.8673 lGI for vertex number 38601 of the outer mesh is 3.3545 lGI for vertex number 38701 of the outer mesh is 5.0084 lGI for vertex number 38801 of the outer mesh is 1.7193 lGI for vertex number 38901 of the outer mesh is 2.6046 lGI for vertex number 39001 of the outer mesh is 3.3044 lGI for vertex number 39101 of the outer mesh is 4.022 lGI for vertex number 39201 of the outer mesh is 1.6137 lGI for vertex number 39301 of the outer mesh is 2.5819 lGI for vertex number 39401 of the outer mesh is 2.3694 lGI for vertex number 39501 of the outer mesh is 2.0475 lGI for vertex number 39601 of the outer mesh is 2.5516 lGI for vertex number 39701 of the outer mesh is 2.4048 lGI for vertex number 39801 of the outer mesh is 1.9071 lGI for vertex number 39901 of the outer mesh is 2.0809 lGI for vertex number 40001 of the outer mesh is 5.0535 ratio saved at 40001 lGI for vertex number 40101 of the outer mesh is 1.747 lGI for vertex number 40201 of the outer mesh is 2.732 lGI for vertex number 40301 of the outer mesh is 1.9744 lGI for vertex number 40401 of the outer mesh is 3.7672 lGI for vertex number 40501 of the outer mesh is 1.1645 lGI for vertex number 40601 of the outer mesh is 2.5683 lGI for vertex number 40701 of the outer mesh is 2.7797 lGI for vertex number 40801 of the outer mesh is 3.0816 lGI for vertex number 40901 of the outer mesh is 4.316 lGI for vertex number 41001 of the outer mesh is 1.5899 lGI for vertex number 41101 of the outer mesh is 2.6529 lGI for vertex number 41201 of the outer mesh is 1.8362 lGI for vertex number 41301 of the outer mesh is 1.9359 lGI for vertex number 41401 of the outer mesh is 4.4094 lGI for vertex number 41501 of the outer mesh is 1.9202 lGI for vertex number 41601 of the outer mesh is 2.3108 lGI for vertex number 41701 of the outer mesh is 3.0034 lGI for vertex number 41801 of the outer mesh is 4.5802 lGI for vertex number 41901 of the outer mesh is 1.1936 lGI for vertex number 42001 of the outer mesh is 2.7818 lGI for vertex number 42101 of the outer mesh is 3.224 lGI for vertex number 42201 of the outer mesh is 5.0551 lGI for vertex number 42301 of the outer mesh is 1.1617 lGI for vertex number 42401 of the outer mesh is 2.6105 lGI for vertex number 42501 of the outer mesh is 3.1997 lGI for vertex number 42601 of the outer mesh is 4.9479 lGI for vertex number 42701 of the outer mesh is 3.5792 lGI for vertex number 42801 of the outer mesh is 1.1955 lGI for vertex number 42901 of the outer mesh is 1.9524 lGI for vertex number 43001 of the outer mesh is 3.0653 lGI for vertex number 43101 of the outer mesh is 4.2778 lGI for vertex number 43201 of the outer mesh is 1.4208 lGI for vertex number 43301 of the outer mesh is 1.6976 lGI for vertex number 43401 of the outer mesh is 2.9953 lGI for vertex number 43501 of the outer mesh is 2.0672 lGI for vertex number 43601 of the outer mesh is 1.5835 lGI for vertex number 43701 of the outer mesh is 2.7492 lGI for vertex number 43801 of the outer mesh is 3.2604 lGI for vertex number 43901 of the outer mesh is 5.1106 lGI for vertex number 44001 of the outer mesh is 1.7125 lGI for vertex number 44101 of the outer mesh is 2.6224 lGI for vertex number 44201 of the outer mesh is 1.84 lGI for vertex number 44301 of the outer mesh is 1.9374 lGI for vertex number 44401 of the outer mesh is 4.4485 lGI for vertex number 44501 of the outer mesh is 2.2847 lGI for vertex number 44601 of the outer mesh is 1.8645 lGI for vertex number 44701 of the outer mesh is 3.1754 lGI for vertex number 44801 of the outer mesh is 4.4542 lGI for vertex number 44901 of the outer mesh is 1.6689 lGI for vertex number 45001 of the outer mesh is 1.7713 lGI for vertex number 45101 of the outer mesh is 2.5056 lGI for vertex number 45201 of the outer mesh is 3.1849 lGI for vertex number 45301 of the outer mesh is 5.1082 lGI for vertex number 45401 of the outer mesh is 1.2506 lGI for vertex number 45501 of the outer mesh is 2.4389 lGI for vertex number 45601 of the outer mesh is 1.906 lGI for vertex number 45701 of the outer mesh is 3.8125 lGI for vertex number 45801 of the outer mesh is 1.7156 lGI for vertex number 45901 of the outer mesh is 1.6521 lGI for vertex number 46001 of the outer mesh is 2.5202 lGI for vertex number 46101 of the outer mesh is 1.8383 lGI for vertex number 46201 of the outer mesh is 4.6902 lGI for vertex number 46301 of the outer mesh is 1.7084 lGI for vertex number 46401 of the outer mesh is 1.8218 lGI for vertex number 46501 of the outer mesh is 3.1792 lGI for vertex number 46601 of the outer mesh is 3.6506 lGI for vertex number 46701 of the outer mesh is 1.6856 lGI for vertex number 46801 of the outer mesh is 1.9813 lGI for vertex number 46901 of the outer mesh is 2.0882 lGI for vertex number 47001 of the outer mesh is 3.2695 lGI for vertex number 47101 of the outer mesh is 1.6263 lGI for vertex number 47201 of the outer mesh is 2.0308 lGI for vertex number 47301 of the outer mesh is 1.9211 lGI for vertex number 47401 of the outer mesh is 2.1561 lGI for vertex number 47501 of the outer mesh is 3.5828 lGI for vertex number 47601 of the outer mesh is 1.4288 lGI for vertex number 47701 of the outer mesh is 2.2747 lGI for vertex number 47801 of the outer mesh is 2.1517 lGI for vertex number 47901 of the outer mesh is 3.207 lGI for vertex number 48001 of the outer mesh is 1.3473 lGI for vertex number 48101 of the outer mesh is 2.3448 lGI for vertex number 48201 of the outer mesh is 2.2169 lGI for vertex number 48301 of the outer mesh is 3.2542 lGI for vertex number 48401 of the outer mesh is 1.8663 lGI for vertex number 48501 of the outer mesh is 1.7913 lGI for vertex number 48601 of the outer mesh is 2.0929 lGI for vertex number 48701 of the outer mesh is 3.381 lGI for vertex number 48801 of the outer mesh is 1.5605 lGI for vertex number 48901 of the outer mesh is 2.3219 lGI for vertex number 49001 of the outer mesh is 2.7213 lGI for vertex number 49101 of the outer mesh is 3.245 lGI for vertex number 49201 of the outer mesh is 2.0651 lGI for vertex number 49301 of the outer mesh is 1.8965 lGI for vertex number 49401 of the outer mesh is 2.3612 lGI for vertex number 49501 of the outer mesh is 3.232 lGI for vertex number 49601 of the outer mesh is 3.6094 lGI for vertex number 49701 of the outer mesh is 2.1052 lGI for vertex number 49801 of the outer mesh is 1.9568 lGI for vertex number 49901 of the outer mesh is 3.0289 lGI for vertex number 50001 of the outer mesh is 3.137 ratio saved at 50001 lGI for vertex number 50101 of the outer mesh is 1.8293 lGI for vertex number 50201 of the outer mesh is 1.99 lGI for vertex number 50301 of the outer mesh is 3.0263 lGI for vertex number 50401 of the outer mesh is 3.2821 lGI for vertex number 50501 of the outer mesh is 1.6744 lGI for vertex number 50601 of the outer mesh is 1.9182 lGI for vertex number 50701 of the outer mesh is 2.3625 lGI for vertex number 50801 of the outer mesh is 2.0434 lGI for vertex number 50901 of the outer mesh is 3.5313 lGI for vertex number 51001 of the outer mesh is 1.7774 lGI for vertex number 51101 of the outer mesh is 1.9987 lGI for vertex number 51201 of the outer mesh is 2.7443 lGI for vertex number 51301 of the outer mesh is 2.7687 lGI for vertex number 51401 of the outer mesh is 2.0718 lGI for vertex number 51501 of the outer mesh is 1.9491 lGI for vertex number 51601 of the outer mesh is 2.633 lGI for vertex number 51701 of the outer mesh is 2.6903 lGI for vertex number 51801 of the outer mesh is 1.4786 lGI for vertex number 51901 of the outer mesh is 1.9206 lGI for vertex number 52001 of the outer mesh is 2.5177 lGI for vertex number 52101 of the outer mesh is 2.7961 lGI for vertex number 52201 of the outer mesh is 3.4049 lGI for vertex number 52301 of the outer mesh is 2.0287 lGI for vertex number 52401 of the outer mesh is 2.1903 lGI for vertex number 52501 of the outer mesh is 2.367 lGI for vertex number 52601 of the outer mesh is 2.6448 lGI for vertex number 52701 of the outer mesh is 2.6677 lGI for vertex number 52801 of the outer mesh is 1.6306 lGI for vertex number 52901 of the outer mesh is 2.0895 lGI for vertex number 53001 of the outer mesh is 2.7921 lGI for vertex number 53101 of the outer mesh is 2.37 lGI for vertex number 53201 of the outer mesh is 3.5803 lGI for vertex number 53301 of the outer mesh is 1.7423 lGI for vertex number 53401 of the outer mesh is 2.1392 lGI for vertex number 53501 of the outer mesh is 2.5036 lGI for vertex number 53601 of the outer mesh is 1.9374 lGI for vertex number 53701 of the outer mesh is 1.9431 lGI for vertex number 53801 of the outer mesh is 2.7895 lGI for vertex number 53901 of the outer mesh is 2.0841 lGI for vertex number 54001 of the outer mesh is 2.2601 lGI for vertex number 54101 of the outer mesh is 2.5509 lGI for vertex number 54201 of the outer mesh is 1.8873 lGI for vertex number 54301 of the outer mesh is 2.2549 lGI for vertex number 54401 of the outer mesh is 2.9131 lGI for vertex number 54501 of the outer mesh is 1.9421 lGI for vertex number 54601 of the outer mesh is 2.377 lGI for vertex number 54701 of the outer mesh is 2.7525 lGI for vertex number 54801 of the outer mesh is 2.0011 lGI for vertex number 54901 of the outer mesh is 1.9445 lGI for vertex number 55001 of the outer mesh is 2.6282 lGI for vertex number 55101 of the outer mesh is 1.9602 lGI for vertex number 55201 of the outer mesh is 1.9211 lGI for vertex number 55301 of the outer mesh is 2.7778 lGI for vertex number 55401 of the outer mesh is 1.9916 lGI for vertex number 55501 of the outer mesh is 2.0086 lGI for vertex number 55601 of the outer mesh is 2.4043 lGI for vertex number 55701 of the outer mesh is 2.7449 lGI for vertex number 55801 of the outer mesh is 2.0421 lGI for vertex number 55901 of the outer mesh is 2.2857 lGI for vertex number 56001 of the outer mesh is 2.9617 lGI for vertex number 56101 of the outer mesh is 1.8266 lGI for vertex number 56201 of the outer mesh is 2.0126 lGI for vertex number 56301 of the outer mesh is 2.111 lGI for vertex number 56401 of the outer mesh is 2.8478 lGI for vertex number 56501 of the outer mesh is 1.9522 lGI for vertex number 56601 of the outer mesh is 2.3116 lGI for vertex number 56701 of the outer mesh is 2.8012 lGI for vertex number 56801 of the outer mesh is 1.88 lGI for vertex number 56901 of the outer mesh is 2.1428 lGI for vertex number 57001 of the outer mesh is 2.7841 lGI for vertex number 57101 of the outer mesh is 1.9198 lGI for vertex number 57201 of the outer mesh is 2.0102 lGI for vertex number 57301 of the outer mesh is 2.7522 lGI for vertex number 57401 of the outer mesh is 3.0883 lGI for vertex number 57501 of the outer mesh is 1.7984 lGI for vertex number 57601 of the outer mesh is 2.2048 lGI for vertex number 57701 of the outer mesh is 2.9653 lGI for vertex number 57801 of the outer mesh is 1.8614 lGI for vertex number 57901 of the outer mesh is 2.3007 lGI for vertex number 58001 of the outer mesh is 2.3329 lGI for vertex number 58101 of the outer mesh is 1.7862 lGI for vertex number 58201 of the outer mesh is 2.216 lGI for vertex number 58301 of the outer mesh is 2.4175 lGI for vertex number 58401 of the outer mesh is 1.8453 lGI for vertex number 58501 of the outer mesh is 2.7555 lGI for vertex number 58601 of the outer mesh is 2.0428 lGI for vertex number 58701 of the outer mesh is 2.4172 lGI for vertex number 58801 of the outer mesh is 2.3811 lGI for vertex number 58901 of the outer mesh is 1.8781 lGI for vertex number 59001 of the outer mesh is 2.212 lGI for vertex number 59101 of the outer mesh is 2.4768 lGI for vertex number 59201 of the outer mesh is 1.9195 lGI for vertex number 59301 of the outer mesh is 2.5058 lGI for vertex number 59401 of the outer mesh is 2.0061 lGI for vertex number 59501 of the outer mesh is 2.4124 lGI for vertex number 59601 of the outer mesh is 2.2981 lGI for vertex number 59701 of the outer mesh is 1.8436 lGI for vertex number 59801 of the outer mesh is 2.2433 lGI for vertex number 59901 of the outer mesh is 2.345 lGI for vertex number 60001 of the outer mesh is 1.8848 ratio saved at 60001 lGI for vertex number 60101 of the outer mesh is 2.2153 lGI for vertex number 60201 of the outer mesh is 1.9918 lGI for vertex number 60301 of the outer mesh is 2.079 lGI for vertex number 60401 of the outer mesh is 2.3643 lGI for vertex number 60501 of the outer mesh is 1.9402 lGI for vertex number 60601 of the outer mesh is 2.3372 lGI for vertex number 60701 of the outer mesh is 2.2953 lGI for vertex number 60801 of the outer mesh is 1.926 lGI for vertex number 60901 of the outer mesh is 2.4318 lGI for vertex number 61001 of the outer mesh is 2.1122 lGI for vertex number 61101 of the outer mesh is 1.8509 lGI for vertex number 61201 of the outer mesh is 2.3208 lGI for vertex number 61301 of the outer mesh is 2.1684 lGI for vertex number 61401 of the outer mesh is 1.7871 lGI for vertex number 61501 of the outer mesh is 2.4662 lGI for vertex number 61601 of the outer mesh is 2.0004 lGI for vertex number 61701 of the outer mesh is 1.8865 lGI for vertex number 61801 of the outer mesh is 1.9759 lGI for vertex number 61901 of the outer mesh is 2.0743 lGI for vertex number 62001 of the outer mesh is 2.3611 lGI for vertex number 62101 of the outer mesh is 2.1106 lGI for vertex number 62201 of the outer mesh is 1.896 lGI for vertex number 62301 of the outer mesh is 1.9655 lGI for vertex number 62401 of the outer mesh is 2.0793 lGI for vertex number 62501 of the outer mesh is 2.3711 lGI for vertex number 62601 of the outer mesh is 1.9616 lGI for vertex number 62701 of the outer mesh is 2.2093 lGI for vertex number 62801 of the outer mesh is 2.1215 lGI for vertex number 62901 of the outer mesh is 2.0019 lGI for vertex number 63001 of the outer mesh is 2.0124 lGI for vertex number 63101 of the outer mesh is 2.0909 .. Almost finished .. now back-propagating values on the folded mesh .. average_lGI_over_the_hemisphere = 2.7073 DONE. deltaT = 1.8583e+03 ================= mris_convert -c /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial_lgi.asc lh.pial lh.pial_lgi ================= ================= rm -Rf /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial ================= done. Start: Tue Dec 15 02:16:59 EET 2015 End: Tue Dec 15 03:31:32 EET 2015 #-------------------------------------------- #@# Local Gyrification Index rh Tue Dec 15 03:31:32 EET 2015 \n mris_compute_lgi --i rh.pial \n ================= rm -Rf /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial ================= ================= mkdir -p /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial ================= ================= mris_fill -c -r 1 rh.pial /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.filled.mgz ================= reading surface from rh.pial... writing filled volume to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.filled.mgz... conforming output volume setting resolution for intermediate calculations to 1.0000 ================= make_outer_surface('/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.filled.mgz',15,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial-outer'); exit ================= 2015-12-15 03:31:37.912 MATLAB_maci64[29818:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> reading filled volume... closing volume... morphological closing done. writing outer surface... ================= mris_extract_main_component /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial-outer /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial-outer-main ================= counting number of connected components... 62966 voxel in cpt #1: X=2 [v=62966,e=188892,f=125928] located at (28.436100, -14.452903, 0.509402) For the whole surface: X=2 [v=62966,e=188892,f=125928] One single component has been found nothing to do done ================= mris_smooth -nw -n 30 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial-outer-main ./rh.pial-outer-smoothed ================= smoothing for 30 iterations smoothing surface tessellation for 30 iterations... smoothing complete - recomputing first and second fundamental forms... ================= mris_euler_number ./rh.pial-outer-smoothed ================= euler # = v-e+f = 2g-2: 62966 - 188892 + 125928 = 2 --> 0 holes F =2V-4: 125928 = 125932-4 (0) 2E=3F: 377784 = 377784 (0) total defect index = 0 ================= mris_convert -n rh.pial-outer-smoothed /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial-outer-smoothed-normals.asc ================= ================= find_corresponding_center_FSformat('rh.pial','rh.pial-outer-smoothed',100,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial','/tmp/mrc_29800_.m'); exit ================= 2015-12-15 03:32:00.806 MATLAB_maci64[29883:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: rh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.02 sec) FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: rh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) deltaT = 4.2600 ================= make_roi_paths('rh.pial','rh.pial-outer-smoothed',25,100,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial','/tmp/mrp_29800_.m'); exit ================= 2015-12-15 03:32:05.803 MATLAB_maci64[29936:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> loading datas ... FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: rh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.02 sec) FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: rh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) preparing outer mesh structure ... face 5000 / 125928 face 10000 / 125928 face 15000 / 125928 face 20000 / 125928 face 25000 / 125928 face 30000 / 125928 face 35000 / 125928 face 40000 / 125928 face 45000 / 125928 face 50000 / 125928 face 55000 / 125928 face 60000 / 125928 face 65000 / 125928 face 70000 / 125928 face 75000 / 125928 face 80000 / 125928 face 85000 / 125928 face 90000 / 125928 face 95000 / 125928 face 100000 / 125928 face 105000 / 125928 face 110000 / 125928 face 115000 / 125928 face 120000 / 125928 face 125000 / 125928 mesh_outer = vertices: [62966x3 double] faces: [125928x3 double] facesOfVertex: [62966x1 struct] preparing pial mesh structure ... ...searching for mesh edges...done (191.35 sec). ... creating path file for vertex 1 / 62966 area file for outer ROIs saved at 1 ... creating path file for vertex 101 / 62966 ... creating path file for vertex 201 / 62966 ... creating path file for vertex 301 / 62966 ... creating path file for vertex 401 / 62966 ... creating path file for vertex 501 / 62966 ... creating path file for vertex 601 / 62966 ... creating path file for vertex 701 / 62966 ... creating path file for vertex 801 / 62966 ... creating path file for vertex 901 / 62966 ... creating path file for vertex 1001 / 62966 ... creating path file for vertex 1101 / 62966 ... creating path file for vertex 1201 / 62966 ... creating path file for vertex 1301 / 62966 ... creating path file for vertex 1401 / 62966 ... creating path file for vertex 1501 / 62966 ... creating path file for vertex 1601 / 62966 ... creating path file for vertex 1701 / 62966 ... creating path file for vertex 1801 / 62966 ... creating path 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creating path file for vertex 49201 / 62966 ... creating path file for vertex 49301 / 62966 ... creating path file for vertex 49401 / 62966 ... creating path file for vertex 49501 / 62966 ... creating path file for vertex 49601 / 62966 ... creating path file for vertex 49701 / 62966 ... creating path file for vertex 49801 / 62966 ... creating path file for vertex 49901 / 62966 ... creating path file for vertex 50001 / 62966 area file for outer ROIs saved at 50001 ... creating path file for vertex 50101 / 62966 ... creating path file for vertex 50201 / 62966 ... creating path file for vertex 50301 / 62966 ... creating path file for vertex 50401 / 62966 ... creating path file for vertex 50501 / 62966 ... creating path file for vertex 50601 / 62966 ... creating path file for vertex 50701 / 62966 ... creating path file for vertex 50801 / 62966 ... creating path file for vertex 50901 / 62966 ... creating path file for vertex 51001 / 62966 ... creating path file for vertex 51101 / 62966 ... creating path file for vertex 51201 / 62966 ... creating path file for vertex 51301 / 62966 ... creating path file for vertex 51401 / 62966 ... creating path file for vertex 51501 / 62966 ... creating path file for vertex 51601 / 62966 ... creating path file for vertex 51701 / 62966 ... creating path file for vertex 51801 / 62966 ... creating path file for vertex 51901 / 62966 ... creating path file for vertex 52001 / 62966 ... creating path file for vertex 52101 / 62966 ... creating path file for vertex 52201 / 62966 ... creating path file for vertex 52301 / 62966 ... creating path file for vertex 52401 / 62966 ... creating path file for vertex 52501 / 62966 ... creating path file for vertex 52601 / 62966 ... creating path file for vertex 52701 / 62966 ... creating path file for vertex 52801 / 62966 ... creating path file for vertex 52901 / 62966 ... creating path file for vertex 53001 / 62966 ... creating path file for vertex 53101 / 62966 ... creating path file for vertex 53201 / 62966 ... creating path file for vertex 53301 / 62966 ... creating path file for vertex 53401 / 62966 ... creating path file for vertex 53501 / 62966 ... creating path file for vertex 53601 / 62966 ... creating path file for vertex 53701 / 62966 ... creating path file for vertex 53801 / 62966 ... creating path file for vertex 53901 / 62966 ... creating path file for vertex 54001 / 62966 non geodesic regions removed from the patch ... creating path file for vertex 54101 / 62966 ... creating path file for vertex 54201 / 62966 ... creating path file for vertex 54301 / 62966 ... creating path file for vertex 54401 / 62966 ... creating path file for vertex 54501 / 62966 ... creating path file for vertex 54601 / 62966 ... creating path file for vertex 54701 / 62966 ... creating path file for vertex 54801 / 62966 ... creating path file for vertex 54901 / 62966 ... creating path file for vertex 55001 / 62966 area file for outer ROIs saved at 55001 ... creating path file for vertex 55101 / 62966 ... creating path file for vertex 55201 / 62966 ... creating path file for vertex 55301 / 62966 ... creating path file for vertex 55401 / 62966 ... creating path file for vertex 55501 / 62966 ... creating path file for vertex 55601 / 62966 ... creating path file for vertex 55701 / 62966 ... creating path file for vertex 55801 / 62966 ... creating path file for vertex 55901 / 62966 ... creating path file for vertex 56001 / 62966 ... creating path file for vertex 56101 / 62966 ... creating path file for vertex 56201 / 62966 ... creating path file for vertex 56301 / 62966 ... creating path file for vertex 56401 / 62966 ... creating path file for vertex 56501 / 62966 ... creating path file for vertex 56601 / 62966 ... creating path file for vertex 56701 / 62966 ... creating path file for vertex 56801 / 62966 ... creating path file for vertex 56901 / 62966 ... creating path file for vertex 57001 / 62966 ... creating path file for vertex 57101 / 62966 ... creating path file for vertex 57201 / 62966 ... creating path file for vertex 57301 / 62966 ... creating path file for vertex 57401 / 62966 ... creating path file for vertex 57501 / 62966 ... creating path file for vertex 57601 / 62966 ... creating path file for vertex 57701 / 62966 ... creating path file for vertex 57801 / 62966 ... creating path file for vertex 57901 / 62966 ... creating path file for vertex 58001 / 62966 ... creating path file for vertex 58101 / 62966 ... creating path file for vertex 58201 / 62966 ... creating path file for vertex 58301 / 62966 ... creating path file for vertex 58401 / 62966 ... creating path file for vertex 58501 / 62966 ... creating path file for vertex 58601 / 62966 ... creating path file for vertex 58701 / 62966 ... creating path file for vertex 58801 / 62966 ... creating path file for vertex 58901 / 62966 ... creating path file for vertex 59001 / 62966 ... creating path file for vertex 59101 / 62966 ... creating path file for vertex 59201 / 62966 ... creating path file for vertex 59301 / 62966 ... creating path file for vertex 59401 / 62966 ... creating path file for vertex 59501 / 62966 ... creating path file for vertex 59601 / 62966 ... creating path file for vertex 59701 / 62966 ... creating path file for vertex 59801 / 62966 ... creating path file for vertex 59901 / 62966 ... creating path file for vertex 60001 / 62966 area file for outer ROIs saved at 60001 ... creating path file for vertex 60101 / 62966 ... creating path file for vertex 60201 / 62966 ... creating path file for vertex 60301 / 62966 ... creating path file for vertex 60401 / 62966 ... creating path file for vertex 60501 / 62966 ... creating path file for vertex 60601 / 62966 ... creating path file for vertex 60701 / 62966 ... creating path file for vertex 60801 / 62966 ... creating path file for vertex 60901 / 62966 ... creating path file for vertex 61001 / 62966 ... creating path file for vertex 61101 / 62966 ... creating path file for vertex 61201 / 62966 ... creating path file for vertex 61301 / 62966 ... creating path file for vertex 61401 / 62966 ... creating path file for vertex 61501 / 62966 ... creating path file for vertex 61601 / 62966 ... creating path file for vertex 61701 / 62966 ... creating path file for vertex 61801 / 62966 ... creating path file for vertex 61901 / 62966 ... creating path file for vertex 62001 / 62966 ... creating path file for vertex 62101 / 62966 ... creating path file for vertex 62201 / 62966 ... creating path file for vertex 62301 / 62966 ... creating path file for vertex 62401 / 62966 ... creating path file for vertex 62501 / 62966 ... creating path file for vertex 62601 / 62966 ... creating path file for vertex 62701 / 62966 ... creating path file for vertex 62801 / 62966 ... creating path file for vertex 62901 / 62966 saving area file in matlab format... DONE. deltaT = 898.9500 ================= mri_path2label --confillxfn rh.pial /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/mri_path2label.input ================= Reading rh.pial Connecting and filling vertices in path at fillseed 13 Finding path........................................................................................................................................................................................................................................................................ done Filling 13 nlabel 8174 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.000001.label Connecting and filling vertices in path at fillseed 142 Finding path............................................................................................................................................................................................................................................................................................................................................................................................ done Filling 142 nlabel 8047 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.000101.label Connecting and filling vertices in path at fillseed 79 Finding path.......................................................................................................................................................................................................................................................................................... done Filling 79 nlabel 8425 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.000201.label Connecting and filling vertices in path at fillseed 59 Finding path................................................................................................................................................................................................................................................................................................................................................................................... done Filling 59 nlabel 7909 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.000301.label Connecting and filling vertices in path at fillseed 133 Finding path................................................................................................................................................................................................................................................................ done Filling 133 nlabel 8352 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.000401.label Connecting and filling vertices in path at fillseed 421 Finding path................................................................................................................................................................................................. done Filling 421 nlabel 5805 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.000501.label Connecting and filling vertices in path at fillseed 366 Finding path......................................................................................................................................................................................................................................................... done Filling 366 nlabel 7565 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.000601.label Connecting and filling vertices in path at fillseed 279 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 279 nlabel 9348 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.000701.label Connecting and filling vertices in path at fillseed 866 Finding path............................................................................................................................................................................................................................................................................... done Filling 866 nlabel 6253 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.000801.label Connecting and filling vertices in path at fillseed 466 Finding path................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 466 nlabel 9512 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.000901.label Connecting and filling vertices in path at fillseed 796 Finding path............................................................................................................................................................................................. done Filling 796 nlabel 6175 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.001001.label Connecting and filling vertices in path at fillseed 1818 Finding path................................................................................................................................................................................................................................................................................................ done Filling 1818 nlabel 8432 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.001101.label Connecting and filling vertices in path at fillseed 1303 Finding path.................................................................................................................................................................................................. done Filling 1303 nlabel 6316 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.001201.label Connecting and filling vertices in path at fillseed 1812 Finding path...................................................................................................................................................................................................................................................................................................... done Filling 1812 nlabel 8134 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.001301.label Connecting and filling vertices in path at fillseed 1102 Finding path............................................................................................................................................................................................................................................................................................................................................................. done Filling 1102 nlabel 6553 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.001401.label Connecting and filling vertices in path at fillseed 1793 Finding path............................................................................................................................................................................................................................................................................................... done Filling 1793 nlabel 8616 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.001501.label Connecting and filling vertices in path at fillseed 1778 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 1778 nlabel 10499 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.001601.label Connecting and filling vertices in path at fillseed 1595 Finding path............................................................................................................................................................................................................ done Filling 1595 nlabel 5830 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.001701.label Connecting and filling vertices in path at fillseed 2274 Finding path.......................................................................................................................................................................................................................................................................................................................................... done Filling 2274 nlabel 7989 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.001801.label Connecting and filling vertices in path at fillseed 1329 Finding path.......................................................................................................................................................................................................................................................................................................................................................... done Filling 1329 nlabel 8094 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.001901.label Connecting and filling vertices in path at fillseed 3267 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 3267 nlabel 7003 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.002001.label Connecting and filling vertices in path at fillseed 1893 Finding path.............................................................................................................................................................................................................................................................................................................................. done Filling 1893 nlabel 8607 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.002101.label Connecting and filling vertices in path at fillseed 2535 Finding path............................................................................................................................................................................................................................................................................ done Filling 2535 nlabel 7386 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.002201.label Connecting and filling vertices in path at fillseed 2641 Finding path...................................................................................................................................................................................... done Filling 2641 nlabel 6725 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.002301.label Connecting and filling vertices in path at fillseed 3895 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 3895 nlabel 6111 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.002401.label Connecting and filling vertices in path at fillseed 1894 Finding path............................................................................................................................................................................................................................................................................................................................................. done Filling 1894 nlabel 9053 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.002501.label Connecting and filling vertices in path at fillseed 2876 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 2876 nlabel 7737 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.002601.label Connecting and filling vertices in path at fillseed 2692 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 2692 nlabel 8890 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.002701.label Connecting and filling vertices in path at fillseed 3884 Finding path................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 3884 nlabel 6288 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.002801.label Connecting and filling vertices in path at fillseed 1995 Finding path.......................................................................................................................................................................................................................... done Filling 1995 nlabel 6421 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.002901.label Connecting and filling vertices in path at fillseed 3458 Finding path.................................................................................................................................................................................................................................................................................................................... done Filling 3458 nlabel 7917 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.003001.label Connecting and filling vertices in path at fillseed 3823 Finding path........................................................................................................................................ done Filling 3823 nlabel 5332 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.003101.label Connecting and filling vertices in path at fillseed 2774 Finding path.............................................................................................................................................................................................................................................................................................................................................................................. done Filling 2774 nlabel 8743 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.003201.label Connecting and filling vertices in path at fillseed 4194 Finding path......................................................................................................................................................................................................................................................... done Filling 4194 nlabel 8137 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.003301.label Connecting and filling vertices in path at fillseed 4698 Finding path.................................................................................................................................................................................................................................................................... done Filling 4698 nlabel 7809 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.003401.label Connecting and filling vertices in path at fillseed 3910 Finding path..................................................................................................................................................................................................................................................................................................................................................................... done Filling 3910 nlabel 8447 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.003501.label Connecting and filling vertices in path at fillseed 3835 Finding path.......................................................................................................................................................... done Filling 3835 nlabel 5474 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.003601.label Connecting and filling vertices in path at fillseed 5343 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 5343 nlabel 7157 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.003701.label Connecting and filling vertices in path at fillseed 7210 Finding path.......................................................................................................................................................................................................................................................................................................................................................................... done Filling 7210 nlabel 8804 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.003801.label Connecting and filling vertices in path at fillseed 4607 Finding path............................................................................................................................................................................................................................................................................................................. done Filling 4607 nlabel 8633 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.003901.label Connecting and filling vertices in path at fillseed 5557 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 5557 nlabel 10135 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.004001.label Connecting and filling vertices in path at fillseed 4478 Finding path..................................................................................................................................................................................................... done Filling 4478 nlabel 6569 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.004101.label Connecting and filling vertices in path at fillseed 5843 Finding path..................................................................................................................................................................................................................................... done Filling 5843 nlabel 6968 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.004201.label Connecting and filling vertices in path at fillseed 5304 Finding path....................................................................................................................................................................................................................................................................................................................................................................................... done Filling 5304 nlabel 8162 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.004301.label Connecting and filling vertices in path at fillseed 4938 Finding path.............................................................................................................................................................................................................................................................................................................................................. done Filling 4938 nlabel 10930 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.004401.label Connecting and filling vertices in path at fillseed 6568 Finding path................................................................................................................................................................................................................................................... done Filling 6568 nlabel 7755 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.004501.label Connecting and filling vertices in path at fillseed 5362 Finding path............................................................................................................................................................................................................................................................................................................................................ done Filling 5362 nlabel 8407 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.004601.label Connecting and filling vertices in path at fillseed 6117 Finding path............................................................................................................................................................................................................................................................................ done Filling 6117 nlabel 5710 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.004701.label Connecting and filling vertices in path at fillseed 5778 Finding path................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 5778 nlabel 9547 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.004801.label Connecting and filling vertices in path at fillseed 8350 Finding path.......................................................................................................................................................................................................................................... done Filling 8350 nlabel 7795 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.004901.label Connecting and filling vertices in path at fillseed 6188 Finding path...................................................................................................................................................................................................................................................................................................................................................................... done Filling 6188 nlabel 8453 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.005001.label Connecting and filling vertices in path at fillseed 6079 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 6079 nlabel 7418 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.005101.label Connecting and filling vertices in path at fillseed 8612 Finding path...................................................................................................................................................................................... done Filling 8612 nlabel 5635 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.005201.label Connecting and filling vertices in path at fillseed 7655 Finding path...................................................................................................................................................................................... done Filling 7655 nlabel 6557 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.005301.label Connecting and filling vertices in path at fillseed 8434 Finding path...................................................................................................................................................................................................................................................................................................................... done Filling 8434 nlabel 8848 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.005401.label Connecting and filling vertices in path at fillseed 8707 Finding path........................................................................................................................................................................................................................................................................................................ done Filling 8707 nlabel 7246 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.005501.label Connecting and filling vertices in path at fillseed 7768 Finding path.................................................................................................................................................................................................................................................... done Filling 7768 nlabel 6633 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.005601.label Connecting and filling vertices in path at fillseed 7256 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 7256 nlabel 10547 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.005701.label Connecting and filling vertices in path at fillseed 9842 Finding path.................................................................................................................................................................................................................................................................................................................................. done Filling 9842 nlabel 8099 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.005801.label Connecting and filling vertices in path at fillseed 10422 Finding path......................................................................................................................................................................................... done Filling 10422 nlabel 6438 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.005901.label Connecting and filling vertices in path at fillseed 9571 Finding path............................................................................................................................................................................................................................................................................ done Filling 9571 nlabel 6410 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.006001.label Connecting and filling vertices in path at fillseed 8612 Finding path......................................................................................................................................................................... done Filling 8612 nlabel 5724 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.006101.label Connecting and filling vertices in path at fillseed 8591 Finding path............................................................................................................................................................................................................................................................. done Filling 8591 nlabel 5135 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.006201.label Connecting and filling vertices in path at fillseed 9768 Finding path.......................................................................................................................................................................................................................................................................................................................................................................... done Filling 9768 nlabel 8615 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.006301.label Connecting and filling vertices in path at fillseed 9612 Finding path................................................................................................................................................................................................................................................................................ done Filling 9612 nlabel 7171 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.006401.label Connecting and filling vertices in path at fillseed 10529 Finding path........................................................................................................................................................................................................................................................ done Filling 10529 nlabel 4796 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.006501.label Connecting and filling vertices in path at fillseed 8283 Finding path......................................................................................................................................................................................................................................................... done Filling 8283 nlabel 10370 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.006601.label Connecting and filling vertices in path at fillseed 12077 Finding path................................................................................................................................................................................................................................................................................................................................................................................... done Filling 12077 nlabel 8419 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.006701.label Connecting and filling vertices in path at fillseed 10729 Finding path................................................................................................................................................................................................................................................................................................. done Filling 10729 nlabel 7657 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.006801.label Connecting and filling vertices in path at fillseed 7729 Finding path............................................................................................................................................................................ done Filling 7729 nlabel 6505 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.006901.label Connecting and filling vertices in path at fillseed 10507 Finding path.............................................................................................................................................................................................. done Filling 10507 nlabel 5983 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.007001.label Connecting and filling vertices in path at fillseed 11822 Finding path........................................................................................................................................................................................................................................................................................................... done Filling 11822 nlabel 8741 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.007101.label Connecting and filling vertices in path at fillseed 11671 Finding path................................................................................................................................................................................................................................................................................................................................ done Filling 11671 nlabel 7622 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.007201.label Connecting and filling vertices in path at fillseed 12490 Finding path.......................................................................................................................................................................................................................................................................................................................... done Filling 12490 nlabel 7463 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.007301.label Connecting and filling vertices in path at fillseed 10955 Finding path................................................................................................................................................................................................................................................................................................... done Filling 10955 nlabel 10253 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.007401.label Connecting and filling vertices in path at fillseed 13029 Finding path...................................................................................................................................................................................................................................................................................................................................................... done Filling 13029 nlabel 9106 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.007501.label Connecting and filling vertices in path at fillseed 11669 Finding path........................................................................................................................................................................................................................................................................................................................................... done Filling 11669 nlabel 7684 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.007601.label Connecting and filling vertices in path at fillseed 11462 Finding path..................................................................................................................................... done Filling 11462 nlabel 6237 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.007701.label Connecting and filling vertices in path at fillseed 10771 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 10771 nlabel 8160 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.007801.label Connecting and filling vertices in path at fillseed 14138 Finding path.............................................................................................................................................................................................................................................................................................................................................................. done Filling 14138 nlabel 9508 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.007901.label Connecting and filling vertices in path at fillseed 17268 Finding path........................................................................................................................................................................................................................................................................................................................................................................................ done Filling 17268 nlabel 8757 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.008001.label Connecting and filling vertices in path at fillseed 12455 Finding path.............................................................................................................................. done Filling 12455 nlabel 6095 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.008101.label Connecting and filling vertices in path at fillseed 12611 Finding path................................................................................................................................................................................................................................................................................................................. done Filling 12611 nlabel 7125 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.008201.label Connecting and filling vertices in path at fillseed 12385 Finding path............................................................................................................................................................................................... done Filling 12385 nlabel 6258 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.008301.label Connecting and filling vertices in path at fillseed 17320 Finding path............................................................................................................................................................................................................................................................................................................................................................................................. done Filling 17320 nlabel 7830 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.008401.label Connecting and filling vertices in path at fillseed 15767 Finding path.................................................................................................................................................................................................................................................................... done Filling 15767 nlabel 6485 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.008501.label Connecting and filling vertices in path at fillseed 14677 Finding path................................................................................................................................................................................................................................... done Filling 14677 nlabel 5266 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.008601.label Connecting and filling vertices in path at fillseed 15432 Finding path.................................................................................................................................................................................................................................................................................. done Filling 15432 nlabel 10252 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.008701.label Connecting and filling vertices in path at fillseed 18502 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 18502 nlabel 7971 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.008801.label Connecting and filling vertices in path at fillseed 14793 Finding path................................................................................................................................................................................................................................................................................................................................................................................... done Filling 14793 nlabel 9167 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.008901.label Connecting and filling vertices in path at fillseed 14665 Finding path....................................................................................................................................................................................................................................... done Filling 14665 nlabel 5869 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.009001.label Connecting and filling vertices in path at fillseed 15257 Finding path..................................................................................................................................................................................................................................................................................................................................... done Filling 15257 nlabel 10417 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.009101.label Connecting and filling vertices in path at fillseed 18511 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 18511 nlabel 7233 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.009201.label Connecting and filling vertices in path at fillseed 17176 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 17176 nlabel 8216 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.009301.label Connecting and filling vertices in path at fillseed 15828 Finding path.................................................................................................................................................................................................................... done Filling 15828 nlabel 6366 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.009401.label Connecting and filling vertices in path at fillseed 18619 Finding path............................................................................................................................................................................................................................................................................................................................................................... done Filling 18619 nlabel 9467 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.009501.label Connecting and filling vertices in path at fillseed 20775 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 20775 nlabel 7333 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.009601.label Connecting and filling vertices in path at fillseed 19429 Finding path................................................................................................................................................................................................................................................................................................................................................................... done Filling 19429 nlabel 8761 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.009701.label Connecting and filling vertices in path at fillseed 15828 Finding path............................................................................................................................................................................................................................... done Filling 15828 nlabel 6135 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.009801.label Connecting and filling vertices in path at fillseed 19746 Finding path................................................................................................................................................................................................................................................................................................................................................... done Filling 19746 nlabel 9603 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.009901.label Connecting and filling vertices in path at fillseed 20740 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 20740 nlabel 8694 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.010001.label Connecting and filling vertices in path at fillseed 19323 Finding path................................................................................................................................................................................................................................................................................................................................................................ done Filling 19323 nlabel 9069 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.010101.label Connecting and filling vertices in path at fillseed 20382 Finding path................................................................................................................................................................................................................ done Filling 20382 nlabel 6109 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.010201.label Connecting and filling vertices in path at fillseed 18375 Finding path............................................................................................................................................................................................................................................................................................................... done Filling 18375 nlabel 7704 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.010301.label Connecting and filling vertices in path at fillseed 20909 Finding path......................................................................................................................................................................................................................................................................................................................................... done Filling 20909 nlabel 8111 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.010401.label Connecting and filling vertices in path at fillseed 23804 Finding path...................................................................................................................................................................................................................................... done Filling 23804 nlabel 7737 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.010501.label Connecting and filling vertices in path at fillseed 21571 Finding path..................................................................................................................................................................................................................................................................................................................................................................................... done Filling 21571 nlabel 7652 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.010601.label Connecting and filling vertices in path at fillseed 21642 Finding path................................................................................................................................................................................................................ done Filling 21642 nlabel 7305 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.010701.label Connecting and filling vertices in path at fillseed 20002 Finding path............................................................................................................................................................................................................................................................................................ done Filling 20002 nlabel 9339 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.010801.label Connecting and filling vertices in path at fillseed 21800 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 21800 nlabel 9599 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.010901.label Connecting and filling vertices in path at fillseed 22900 Finding path...................................................................................................................................................................................................................................................................................................... done Filling 22900 nlabel 8923 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.011001.label Connecting and filling vertices in path at fillseed 18134 Finding path...................................................................................................................................................................................................................................................................................................................... done Filling 18134 nlabel 6833 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.011101.label Connecting and filling vertices in path at fillseed 20325 Finding path............................................................................................................................................................................................................................................... done Filling 20325 nlabel 6522 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.011201.label Connecting and filling vertices in path at fillseed 20295 Finding path................................................................................................................................................................................................................................................................................... done Filling 20295 nlabel 6834 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.011301.label Connecting and filling vertices in path at fillseed 22462 Finding path................................................................................................................................................................................................................................................................................................................. done Filling 22462 nlabel 9029 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.011401.label Connecting and filling vertices in path at fillseed 24102 Finding path................................................................................................................................................................................................................................................................................................................................................................ done Filling 24102 nlabel 9690 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.011501.label Connecting and filling vertices in path at fillseed 19233 Finding path......................................................................................................................................................................................................................... done Filling 19233 nlabel 6303 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.011601.label Connecting and filling vertices in path at fillseed 22919 Finding path....................................................................................................................................................................................................... done Filling 22919 nlabel 7725 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.011701.label Connecting and filling vertices in path at fillseed 21182 Finding path......................................................................................................................................................................................................................................................................................... done Filling 21182 nlabel 9261 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.011801.label Connecting and filling vertices in path at fillseed 23089 Finding path..................................................................................................................................................................................................................................................................................................... done Filling 23089 nlabel 9247 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.011901.label Connecting and filling vertices in path at fillseed 25150 Finding path.................................................................................................................................................................................................................................................................... done Filling 25150 nlabel 7628 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.012001.label Connecting and filling vertices in path at fillseed 23983 Finding path.......................................................................................................................................................................................................................................... done Filling 23983 nlabel 4847 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.012101.label Connecting and filling vertices in path at fillseed 23358 Finding path......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 23358 nlabel 9571 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.012201.label Connecting and filling vertices in path at fillseed 27133 Finding path......................................................................................................................................................................................................................................................................................................... done Filling 27133 nlabel 8721 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.012301.label Connecting and filling vertices in path at fillseed 24192 Finding path............................................................................................................................................................................................................................................................................................................................................. done Filling 24192 nlabel 9078 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.012401.label Connecting and filling vertices in path at fillseed 26334 Finding path................................................................................................................................................................................................................................................................................... done Filling 26334 nlabel 5415 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.012501.label Connecting and filling vertices in path at fillseed 23079 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 23079 nlabel 8221 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.012601.label Connecting and filling vertices in path at fillseed 26842 Finding path................................................................................................................................................................................................................................................................................................. done Filling 26842 nlabel 8237 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.012701.label Connecting and filling vertices in path at fillseed 27379 Finding path........................................................................................................................................................................................................................ done Filling 27379 nlabel 7425 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.012801.label Connecting and filling vertices in path at fillseed 25163 Finding path...................................................................................................................................................................................................................... done Filling 25163 nlabel 7093 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.012901.label Connecting and filling vertices in path at fillseed 26346 Finding path................................................................................................................................................................................................................................................................... done Filling 26346 nlabel 6815 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.013001.label Connecting and filling vertices in path at fillseed 23504 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 23504 nlabel 9639 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.013101.label Connecting and filling vertices in path at fillseed 30613 Finding path.................................................................................................................................................................................................................................................................................................... done Filling 30613 nlabel 9323 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.013201.label Connecting and filling vertices in path at fillseed 27481 Finding path................................................................................................................................................................................................................................................................................... done Filling 27481 nlabel 7099 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.013301.label Connecting and filling vertices in path at fillseed 26332 Finding path....................................................................................................................................................................................................................................... done Filling 26332 nlabel 5785 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.013401.label Connecting and filling vertices in path at fillseed 28173 Finding path........................................................................................................................................................................................................................................................................................................................................... done Filling 28173 nlabel 9832 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.013501.label Connecting and filling vertices in path at fillseed 29022 Finding path.................................................................................................................................................................................................................................................................................................................................................................................. done Filling 29022 nlabel 9383 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.013601.label Connecting and filling vertices in path at fillseed 29758 Finding path................................................................................................................................................................................................................................. done Filling 29758 nlabel 7019 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.013701.label Connecting and filling vertices in path at fillseed 25153 Finding path....................................................................................................................................................................................................... done Filling 25153 nlabel 7099 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.013801.label Connecting and filling vertices in path at fillseed 27558 Finding path................................................................................................................................................................................................................................................................... done Filling 27558 nlabel 6482 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.013901.label Connecting and filling vertices in path at fillseed 29319 Finding path........................................................................................................................................................................................................................................................................................................ done Filling 29319 nlabel 9699 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.014001.label Connecting and filling vertices in path at fillseed 28479 Finding path................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 28479 nlabel 9688 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.014101.label Connecting and filling vertices in path at fillseed 27547 Finding path......................................................................................................................................................................................................................................................................................................................................... done Filling 27547 nlabel 9293 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.014201.label Connecting and filling vertices in path at fillseed 26199 Finding path...................................................................................................................................................................................................................................................................................................................................................... done Filling 26199 nlabel 8681 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.014301.label Connecting and filling vertices in path at fillseed 29273 Finding path....................................................................................................................................................................................................................................................................................................................................... done Filling 29273 nlabel 9900 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.014401.label Connecting and filling vertices in path at fillseed 30010 Finding path........................................................................................................................................................................................................................................................................................................................................................... done Filling 30010 nlabel 9281 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.014501.label Connecting and filling vertices in path at fillseed 28638 Finding path..................................................................................................................................................................................................................... done Filling 28638 nlabel 6483 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.014601.label Connecting and filling vertices in path at fillseed 26363 Finding path.......................................................................................................................................................................................................................................... done Filling 26363 nlabel 7144 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.014701.label Connecting and filling vertices in path at fillseed 29501 Finding path.......................................................................................................................................................................................................................................................................... done Filling 29501 nlabel 9424 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.014801.label Connecting and filling vertices in path at fillseed 32742 Finding path..................................................................................................................................................................................................................................................................................................................................... done Filling 32742 nlabel 8876 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.014901.label Connecting and filling vertices in path at fillseed 31999 Finding path..................................................................................................................................................................................... done Filling 31999 nlabel 6919 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.015001.label Connecting and filling vertices in path at fillseed 27511 Finding path........................................................................................................................................................................................................................... done Filling 27511 nlabel 6424 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.015101.label Connecting and filling vertices in path at fillseed 30166 Finding path....................................................................................................................................................................................................................................................................................................................................................... done Filling 30166 nlabel 7887 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.015201.label Connecting and filling vertices in path at fillseed 32322 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 32322 nlabel 9065 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.015301.label Connecting and filling vertices in path at fillseed 31020 Finding path............................................................................................................................................................................................................................................................................................................................................. done Filling 31020 nlabel 9857 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.015401.label Connecting and filling vertices in path at fillseed 28582 Finding path................................................................................................................................................................................................................................................................................................................................................ done Filling 28582 nlabel 7348 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.015501.label Connecting and filling vertices in path at fillseed 28887 Finding path....................................................................................................................................................................... done Filling 28887 nlabel 7816 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.015601.label Connecting and filling vertices in path at fillseed 34701 Finding path.................................................................................................................................................................................................................................................................................................................................................. done Filling 34701 nlabel 7711 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.015701.label Connecting and filling vertices in path at fillseed 38646 Finding path................................................................................................................................................................................................................................... done Filling 38646 nlabel 6610 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.015801.label Connecting and filling vertices in path at fillseed 29822 Finding path....................................................................................................................................................................................................................................................................................................................................................................... done Filling 29822 nlabel 9545 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.015901.label Connecting and filling vertices in path at fillseed 34125 Finding path........................................................................................................................................................................................... done Filling 34125 nlabel 6431 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.016001.label Connecting and filling vertices in path at fillseed 34202 Finding path............................................................................................................................................................................................................................................. done Filling 34202 nlabel 6779 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.016101.label Connecting and filling vertices in path at fillseed 31049 Finding path........................................................................................................................................................... done Filling 31049 nlabel 7201 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.016201.label Connecting and filling vertices in path at fillseed 36164 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 36164 nlabel 9506 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.016301.label Connecting and filling vertices in path at fillseed 32088 Finding path..................................................................................................................................................................................................................................................................................................................................................................... done Filling 32088 nlabel 9328 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.016401.label Connecting and filling vertices in path at fillseed 32964 Finding path...................................................................................................................................................................................................................................... done Filling 32964 nlabel 8788 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.016501.label Connecting and filling vertices in path at fillseed 29874 Finding path........................................................................................................................................................................................................................ done Filling 29874 nlabel 6979 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.016601.label Connecting and filling vertices in path at fillseed 33469 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 33469 nlabel 9534 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.016701.label Connecting and filling vertices in path at fillseed 38656 Finding path.......................................................................................................................................................................... done Filling 38656 nlabel 5875 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.016801.label Connecting and filling vertices in path at fillseed 32045 Finding path.............................................................................................................................................................................................................................................................................................................................................. done Filling 32045 nlabel 9831 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.016901.label Connecting and filling vertices in path at fillseed 35281 Finding path.................................................................................................................................................................................................................. done Filling 35281 nlabel 5781 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.017001.label Connecting and filling vertices in path at fillseed 33227 Finding path................................................................................................................................................................. done Filling 33227 nlabel 7955 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.017101.label Connecting and filling vertices in path at fillseed 39169 Finding path........................................................................................................................................................................................................................................................................................................................................................................................... done Filling 39169 nlabel 8487 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.017201.label Connecting and filling vertices in path at fillseed 33251 Finding path.................................................................................................................................................................................................................................................................................................................... done Filling 33251 nlabel 9947 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.017301.label Connecting and filling vertices in path at fillseed 36334 Finding path........................................................................................................................................................................................................... done Filling 36334 nlabel 6890 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.017401.label Connecting and filling vertices in path at fillseed 32103 Finding path.............................................................................................................................................................................................................................. done Filling 32103 nlabel 7215 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.017501.label Connecting and filling vertices in path at fillseed 37094 Finding path.......................................................................................................................................................................................................................................................................................................................................................... done Filling 37094 nlabel 9263 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.017601.label Connecting and filling vertices in path at fillseed 40794 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 40794 nlabel 9491 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.017701.label Connecting and filling vertices in path at fillseed 38843 Finding path..................................................................................................................................................................................................................................................................................................................................... done Filling 38843 nlabel 9764 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.017801.label Connecting and filling vertices in path at fillseed 38800 Finding path............................................................................................................................................................................................................................................................................................................................................ done Filling 38800 nlabel 9472 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.017901.label Connecting and filling vertices in path at fillseed 37521 Finding path........................................................................................................................................................................................................ done Filling 37521 nlabel 5628 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.018001.label Connecting and filling vertices in path at fillseed 36746 Finding path................................................................................................................................................................................................. done Filling 36746 nlabel 6711 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.018101.label Connecting and filling vertices in path at fillseed 39386 Finding path......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 39386 nlabel 9719 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.018201.label Connecting and filling vertices in path at fillseed 40855 Finding path......................................................................................................................................................................... done Filling 40855 nlabel 6388 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.018301.label Connecting and filling vertices in path at fillseed 39769 Finding path.................................................................................................................................................................. done Filling 39769 nlabel 6817 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.018401.label Connecting and filling vertices in path at fillseed 39804 Finding path........................................................................................................................................................................................................................ done Filling 39804 nlabel 5584 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.018501.label Connecting and filling vertices in path at fillseed 39261 Finding path..................................................................................................................................................................................................................................................................................................................................................................................... done Filling 39261 nlabel 7268 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.018601.label Connecting and filling vertices in path at fillseed 41830 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 41830 nlabel 9690 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.018701.label Connecting and filling vertices in path at fillseed 37500 Finding path............................................................................................................................................................................................................ done Filling 37500 nlabel 7344 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.018801.label Connecting and filling vertices in path at fillseed 38691 Finding path................................................................................................................................................................................................................................................................................. done Filling 38691 nlabel 5494 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.018901.label Connecting and filling vertices in path at fillseed 38221 Finding path................................................................................................................................................................................................................................................................................................................................................. done Filling 38221 nlabel 8639 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.019001.label Connecting and filling vertices in path at fillseed 42937 Finding path......................................................................................................................................................................................................................................................................................................................................................................... done Filling 42937 nlabel 9373 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.019101.label Connecting and filling vertices in path at fillseed 41005 Finding path................................................................................................................................................................................................................................................................................................................................................................. done Filling 41005 nlabel 9548 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.019201.label Connecting and filling vertices in path at fillseed 43037 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 43037 nlabel 9159 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.019301.label Connecting and filling vertices in path at fillseed 43616 Finding path............................................................................................................................................................................................................. done Filling 43616 nlabel 6669 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.019401.label Connecting and filling vertices in path at fillseed 44080 Finding path.............................................................................................................................................................................................................................................................................................................................................................. done Filling 44080 nlabel 9220 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.019501.label Connecting and filling vertices in path at fillseed 40884 Finding path............................................................................................................................................................................................................................... done Filling 40884 nlabel 7588 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.019601.label Connecting and filling vertices in path at fillseed 43034 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 43034 nlabel 8720 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.019701.label Connecting and filling vertices in path at fillseed 43573 Finding path........................................................................................................................................................................ done Filling 43573 nlabel 7146 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.019801.label Connecting and filling vertices in path at fillseed 44031 Finding path....................................................................................................................................................................................................................................................................................................................................................... done Filling 44031 nlabel 9817 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.019901.label Connecting and filling vertices in path at fillseed 44483 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 44483 nlabel 11121 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.020001.label Connecting and filling vertices in path at fillseed 42043 Finding path........................................................................................................................................................................................................................................... done Filling 42043 nlabel 6179 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.020101.label Connecting and filling vertices in path at fillseed 43883 Finding path.................................................................................................................................................................................................................................................................................................................................................................. done Filling 43883 nlabel 7732 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.020201.label Connecting and filling vertices in path at fillseed 45094 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 45094 nlabel 10800 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.020301.label Connecting and filling vertices in path at fillseed 45672 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 45672 nlabel 9451 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.020401.label Connecting and filling vertices in path at fillseed 44244 Finding path........................................................................................................................................................................................................................................................................ done Filling 44244 nlabel 6787 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.020501.label Connecting and filling vertices in path at fillseed 42784 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 42784 nlabel 7413 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.020601.label Connecting and filling vertices in path at fillseed 42618 Finding path.............................................................................................................................................................................................................................................................................................................................................................. done Filling 42618 nlabel 7505 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.020701.label Connecting and filling vertices in path at fillseed 48080 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 48080 nlabel 8457 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.020801.label Connecting and filling vertices in path at fillseed 44442 Finding path......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 44442 nlabel 10651 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.020901.label Connecting and filling vertices in path at fillseed 46302 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 46302 nlabel 10468 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.021001.label Connecting and filling vertices in path at fillseed 46428 Finding path........................................................................................................................................................................... done Filling 46428 nlabel 4426 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.021101.label Connecting and filling vertices in path at fillseed 50606 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 50606 nlabel 9264 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.021201.label Connecting and filling vertices in path at fillseed 48976 Finding path................................................................................................................................................................................................................................................................................................................................. done Filling 48976 nlabel 9505 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.021301.label Connecting and filling vertices in path at fillseed 46461 Finding path............................................................................................................................................................................................................................................................... done Filling 46461 nlabel 7775 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.021401.label Connecting and filling vertices in path at fillseed 47229 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 47229 nlabel 8380 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.021501.label Connecting and filling vertices in path at fillseed 49256 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 49256 nlabel 9219 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.021601.label Connecting and filling vertices in path at fillseed 49795 Finding path................................................................................................................................................................................................................................................................................................................................................................................... done Filling 49795 nlabel 6682 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.021701.label Connecting and filling vertices in path at fillseed 49807 Finding path......................................................................................................................................................................... done Filling 49807 nlabel 6407 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.021801.label Connecting and filling vertices in path at fillseed 48364 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 48364 nlabel 8676 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.021901.label Connecting and filling vertices in path at fillseed 47152 Finding path............................................................................................................................................................................................................................................................................................................................................................... done Filling 47152 nlabel 6310 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.022001.label Connecting and filling vertices in path at fillseed 51040 Finding path......................................................................................................................................................................... done Filling 51040 nlabel 5704 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.022101.label Connecting and filling vertices in path at fillseed 47614 Finding path................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 47614 nlabel 10874 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.022201.label Connecting and filling vertices in path at fillseed 48659 Finding path................................................................................................................................................................................................ done Filling 48659 nlabel 4726 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.022301.label Connecting and filling vertices in path at fillseed 49302 Finding path.................................................................................................................................................................................................................................. done Filling 49302 nlabel 5509 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.022401.label Connecting and filling vertices in path at fillseed 52165 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 52165 nlabel 9011 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.022501.label Connecting and filling vertices in path at fillseed 53550 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................. done Filling 53550 nlabel 11070 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.022601.label Connecting and filling vertices in path at fillseed 49658 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 49658 nlabel 7705 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.022701.label Connecting and filling vertices in path at fillseed 49491 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 49491 nlabel 7374 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.022801.label Connecting and filling vertices in path at fillseed 52736 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 52736 nlabel 9528 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.022901.label Connecting and filling vertices in path at fillseed 50076 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................. done Filling 50076 nlabel 10728 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.023001.label Connecting and filling vertices in path at fillseed 51098 Finding path..................................................................................................................................................................................................................................................... done Filling 51098 nlabel 7793 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.023101.label Connecting and filling vertices in path at fillseed 49874 Finding path.......................................................................................................................................................................................................... done Filling 49874 nlabel 6425 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.023201.label Connecting and filling vertices in path at fillseed 54021 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 54021 nlabel 10077 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.023301.label Connecting and filling vertices in path at fillseed 52508 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 52508 nlabel 10599 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.023401.label Connecting and filling vertices in path at fillseed 54507 Finding path......................................................................................................................................................................................................................................................................................................................................... done Filling 54507 nlabel 7956 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.023501.label Connecting and filling vertices in path at fillseed 49547 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 49547 nlabel 8820 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.023601.label Connecting and filling vertices in path at fillseed 52865 Finding path............................................................................................................................................................................................................................................. done Filling 52865 nlabel 6526 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.023701.label Connecting and filling vertices in path at fillseed 53768 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 53768 nlabel 8715 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.023801.label Connecting and filling vertices in path at fillseed 53560 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 53560 nlabel 11769 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.023901.label Connecting and filling vertices in path at fillseed 53336 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 53336 nlabel 8602 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.024001.label Connecting and filling vertices in path at fillseed 52449 Finding path............................................................................................................................................................................................................... done Filling 52449 nlabel 7051 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.024101.label Connecting and filling vertices in path at fillseed 55299 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 55299 nlabel 10499 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.024201.label Connecting and filling vertices in path at fillseed 53628 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 53628 nlabel 9937 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.024301.label Connecting and filling vertices in path at fillseed 54619 Finding path........................................................................................................................................................................................................................................... done Filling 54619 nlabel 8385 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.024401.label Connecting and filling vertices in path at fillseed 53448 Finding path......................................................................................................................................................................................................... done Filling 53448 nlabel 4729 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.024501.label Connecting and filling vertices in path at fillseed 55104 Finding path.............................................................................................................................................................................................................................................. done Filling 55104 nlabel 5381 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.024601.label Connecting and filling vertices in path at fillseed 56739 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 56739 nlabel 8294 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.024701.label Connecting and filling vertices in path at fillseed 55725 Finding path............................................................................................................................................................. done Filling 55725 nlabel 5824 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.024801.label Connecting and filling vertices in path at fillseed 53445 Finding path...................................................................................................................................................................................... done Filling 53445 nlabel 4722 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.024901.label Connecting and filling vertices in path at fillseed 54691 Finding path.................................................................................................................................................................................................. done Filling 54691 nlabel 7252 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.025001.label Connecting and filling vertices in path at fillseed 57906 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 57906 nlabel 7690 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.025101.label Connecting and filling vertices in path at fillseed 56761 Finding path....................................................................................................................................................................................................................................................................................................................................................... done Filling 56761 nlabel 7129 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.025201.label Connecting and filling vertices in path at fillseed 54594 Finding path..................................................................................................................................................................................... done Filling 54594 nlabel 4752 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.025301.label Connecting and filling vertices in path at fillseed 56189 Finding path............................................................................................................................................................................................................................. done Filling 56189 nlabel 5610 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.025401.label Connecting and filling vertices in path at fillseed 58222 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 58222 nlabel 8801 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.025501.label Connecting and filling vertices in path at fillseed 58024 Finding path.......................................................................................................................................................................................................................................................... done Filling 58024 nlabel 8323 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.025601.label Connecting and filling vertices in path at fillseed 56603 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 56603 nlabel 7349 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.025701.label Connecting and filling vertices in path at fillseed 57375 Finding path.................................................................................................................................................................................................................................................................................................. done Filling 57375 nlabel 4472 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.025801.label Connecting and filling vertices in path at fillseed 56051 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 56051 nlabel 8409 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.025901.label Connecting and filling vertices in path at fillseed 58070 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 58070 nlabel 9828 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.026001.label Connecting and filling vertices in path at fillseed 57745 Finding path.......................................................................................................................................................................................................................................................................................................................................................... done Filling 57745 nlabel 7360 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.026101.label Connecting and filling vertices in path at fillseed 59508 Finding path.................................................................................................................................................................................. done Filling 59508 nlabel 6391 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.026201.label Connecting and filling vertices in path at fillseed 58344 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 58344 nlabel 8485 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.026301.label Connecting and filling vertices in path at fillseed 60266 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60266 nlabel 10229 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.026401.label Connecting and filling vertices in path at fillseed 60039 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 60039 nlabel 8046 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.026501.label Connecting and filling vertices in path at fillseed 60354 Finding path............................................................................................................................................................................. done Filling 60354 nlabel 6458 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.026601.label Connecting and filling vertices in path at fillseed 61815 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 61815 nlabel 10917 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.026701.label Connecting and filling vertices in path at fillseed 60301 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 60301 nlabel 9746 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.026801.label Connecting and filling vertices in path at fillseed 57980 Finding path.......................................................................................................................................................................................................................................... done Filling 57980 nlabel 7112 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.026901.label Connecting and filling vertices in path at fillseed 60509 Finding path............................................................................................................................................................................................................ done Filling 60509 nlabel 6539 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.027001.label Connecting and filling vertices in path at fillseed 63570 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 63570 nlabel 10491 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.027101.label Connecting and filling vertices in path at fillseed 130797 Finding path.................................................................................................................................................................................................................................................................................. done Filling 130797 nlabel 5917 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.027201.label Connecting and filling vertices in path at fillseed 60107 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60107 nlabel 8560 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.027301.label Connecting and filling vertices in path at fillseed 63674 Finding path.............................................................................................................................................................................................................................................................................. done Filling 63674 nlabel 4525 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.027401.label Connecting and filling vertices in path at fillseed 62783 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 62783 nlabel 9920 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.027501.label Connecting and filling vertices in path at fillseed 62376 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 62376 nlabel 8759 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.027601.label Connecting and filling vertices in path at fillseed 62252 Finding path............................................................................................................................................................................................................. done Filling 62252 nlabel 8253 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.027701.label Connecting and filling vertices in path at fillseed 63688 Finding path........................................................................................................................................................................................................................................................................................ done Filling 63688 nlabel 6102 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.027801.label Connecting and filling vertices in path at fillseed 63750 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 63750 nlabel 11014 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.027901.label Connecting and filling vertices in path at fillseed 64125 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 64125 nlabel 6593 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.028001.label Connecting and filling vertices in path at fillseed 62219 Finding path............................................................................................................................................................................................................................................................. done Filling 62219 nlabel 7546 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.028101.label Connecting and filling vertices in path at fillseed 63154 Finding path.................................................................................................................................................................................................................................................... done Filling 63154 nlabel 5968 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.028201.label Connecting and filling vertices in path at fillseed 66206 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 66206 nlabel 9261 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.028301.label Connecting and filling vertices in path at fillseed 65460 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 65460 nlabel 10073 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.028401.label Connecting and filling vertices in path at fillseed 62235 Finding path........................................................................................................................................................................................................................................................................................................................................................ done Filling 62235 nlabel 8956 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.028501.label Connecting and filling vertices in path at fillseed 130816 Finding path.............................................................................................................................................................................................................................. done Filling 130816 nlabel 5109 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.028601.label Connecting and filling vertices in path at fillseed 65104 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 65104 nlabel 9685 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.028701.label Connecting and filling vertices in path at fillseed 66440 Finding path............................................................................................................................................... done Filling 66440 nlabel 6272 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.028801.label Connecting and filling vertices in path at fillseed 64170 Finding path........................................................................................................................................................................................................................ done Filling 64170 nlabel 8157 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.028901.label Connecting and filling vertices in path at fillseed 67265 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 67265 nlabel 7226 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.029001.label Connecting and filling vertices in path at fillseed 66456 Finding path................................................................................................................................................................................................................................................. done Filling 66456 nlabel 5640 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.029101.label Connecting and filling vertices in path at fillseed 70926 Finding path................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 70926 nlabel 6820 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.029201.label Connecting and filling vertices in path at fillseed 65347 Finding path......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 65347 nlabel 9116 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.029301.label Connecting and filling vertices in path at fillseed 70894 Finding path............................................................................................................................................................................................................................................................................................................................................................................... done Filling 70894 nlabel 9048 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.029401.label Connecting and filling vertices in path at fillseed 69062 Finding path................................................................................................................................................................................... done Filling 69062 nlabel 6641 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.029501.label Connecting and filling vertices in path at fillseed 63514 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 63514 nlabel 7587 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.029601.label Connecting and filling vertices in path at fillseed 67591 Finding path...................................................................................................................................................... done Filling 67591 nlabel 6072 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.029701.label Connecting and filling vertices in path at fillseed 67576 Finding path................................................................................................................................................................................................................................................................................................................................................. done Filling 67576 nlabel 9135 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.029801.label Connecting and filling vertices in path at fillseed 69599 Finding path................................................................................................................................................................................................................................................................................................................................................................ done Filling 69599 nlabel 8335 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.029901.label Connecting and filling vertices in path at fillseed 68028 Finding path.................................................................................................................................................................................................. done Filling 68028 nlabel 5607 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.030001.label Connecting and filling vertices in path at fillseed 72884 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 72884 nlabel 13808 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.030101.label Connecting and filling vertices in path at fillseed 66555 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 66555 nlabel 10749 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.030201.label Connecting and filling vertices in path at fillseed 74480 Finding path.................................................................................................................................................................................................................................................................................................................. done Filling 74480 nlabel 9292 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.030301.label Connecting and filling vertices in path at fillseed 70589 Finding path.................................................................................................................................................................................................................................................................................................................................................................... done Filling 70589 nlabel 7043 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.030401.label Connecting and filling vertices in path at fillseed 70314 Finding path.................................................................................................................................................................... done Filling 70314 nlabel 5074 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.030501.label Connecting and filling vertices in path at fillseed 71361 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 71361 nlabel 7950 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.030601.label Connecting and filling vertices in path at fillseed 72127 Finding path.................................................................................................................................................................................................. done Filling 72127 nlabel 6450 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.030701.label Connecting and filling vertices in path at fillseed 75508 Finding path.......................................................................................................................................................................................................................................................................................................................... done Filling 75508 nlabel 9293 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.030801.label Connecting and filling vertices in path at fillseed 71642 Finding path................................................................................................................................................................................................................... done Filling 71642 nlabel 5462 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.030901.label Connecting and filling vertices in path at fillseed 130843 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 130843 nlabel 7469 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.031001.label Connecting and filling vertices in path at fillseed 73306 Finding path.................................................................................................................................................................................................................................................................................................................................................................... done Filling 73306 nlabel 6854 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.031101.label Connecting and filling vertices in path at fillseed 67728 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 67728 nlabel 9798 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.031201.label Connecting and filling vertices in path at fillseed 76577 Finding path.......................................................................................................................................................................................................................................................................................................................................................... done Filling 76577 nlabel 8862 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.031301.label Connecting and filling vertices in path at fillseed 69896 Finding path............................................................................................................................................................................ done Filling 69896 nlabel 5618 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.031401.label Connecting and filling vertices in path at fillseed 72655 Finding path........................................................................................................................................................................................................... done Filling 72655 nlabel 4317 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.031501.label Connecting and filling vertices in path at fillseed 71323 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 71323 nlabel 8536 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.031601.label Connecting and filling vertices in path at fillseed 74628 Finding path................................................................................................................................................................................................................................................................................................................................. done Filling 74628 nlabel 10388 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.031701.label Connecting and filling vertices in path at fillseed 75510 Finding path........................................................................................................................................................................................................................................................................................................................ done Filling 75510 nlabel 9127 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.031801.label Connecting and filling vertices in path at fillseed 71083 Finding path....................................................................................................................................................................................................................................... done Filling 71083 nlabel 6327 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.031901.label Connecting and filling vertices in path at fillseed 75265 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 75265 nlabel 14318 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.032001.label Connecting and filling vertices in path at fillseed 72455 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 72455 nlabel 8704 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.032101.label Connecting and filling vertices in path at fillseed 74617 Finding path..................................................................................................................................................................................................................................................................................................................... done Filling 74617 nlabel 10591 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.032201.label Connecting and filling vertices in path at fillseed 74567 Finding path................................................................................................................................................................................................................................................................................................. done Filling 74567 nlabel 7225 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.032301.label Connecting and filling vertices in path at fillseed 76479 Finding path.................................................................................................................................................................................................................................................................. done Filling 76479 nlabel 8399 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.032401.label Connecting and filling vertices in path at fillseed 77205 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 77205 nlabel 13612 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.032501.label Connecting and filling vertices in path at fillseed 77750 Finding path......................................................................................................................................................................... done Filling 77750 nlabel 4974 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.032601.label Connecting and filling vertices in path at fillseed 75602 Finding path...................................................................................................................................................................................................................................................................... done Filling 75602 nlabel 8157 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.032701.label Connecting and filling vertices in path at fillseed 71126 Finding path............................................................................................................................................................................................. done Filling 71126 nlabel 6301 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.032801.label Connecting and filling vertices in path at fillseed 75373 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 75373 nlabel 9887 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.032901.label Connecting and filling vertices in path at fillseed 76931 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 76931 nlabel 8941 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.033001.label Connecting and filling vertices in path at fillseed 78814 Finding path............................................................................................................................... done Filling 78814 nlabel 4883 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.033101.label Connecting and filling vertices in path at fillseed 73394 Finding path................................................................................................................................................................................................ done Filling 73394 nlabel 6043 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.033201.label Connecting and filling vertices in path at fillseed 77161 Finding path.................................................................................................... done Filling 77161 nlabel 3793 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.033301.label Connecting and filling vertices in path at fillseed 78096 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 78096 nlabel 9556 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.033401.label Connecting and filling vertices in path at fillseed 79858 Finding path......................................................................................................................................................................... done Filling 79858 nlabel 5603 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.033501.label Connecting and filling vertices in path at fillseed 79781 Finding path...................................................................................................................................................................................................................................................................................................................................... done Filling 79781 nlabel 8783 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.033601.label Connecting and filling vertices in path at fillseed 78410 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 78410 nlabel 8206 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.033701.label Connecting and filling vertices in path at fillseed 74872 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 74872 nlabel 9866 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.033801.label Connecting and filling vertices in path at fillseed 81060 Finding path....................................................................................................................................................................... done Filling 81060 nlabel 5438 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.033901.label Connecting and filling vertices in path at fillseed 79825 Finding path....................................................................................................................................................................................................................................................................... done Filling 79825 nlabel 9162 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.034001.label Connecting and filling vertices in path at fillseed 78921 Finding path..................................................................................................................................................................................................................................... done Filling 78921 nlabel 7033 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.034101.label Connecting and filling vertices in path at fillseed 78480 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 78480 nlabel 13653 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.034201.label Connecting and filling vertices in path at fillseed 83495 Finding path......................................................................................................................................................................................................................................................................................................................... done Filling 83495 nlabel 5445 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.034301.label Connecting and filling vertices in path at fillseed 78923 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 78923 nlabel 7227 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.034401.label Connecting and filling vertices in path at fillseed 77776 Finding path........................................................................................................................................................................................................................ done Filling 77776 nlabel 6253 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.034501.label Connecting and filling vertices in path at fillseed 78576 Finding path.................................................................................................................................................................................................................................................................... done Filling 78576 nlabel 8072 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.034601.label Connecting and filling vertices in path at fillseed 83443 Finding path.............................................................................................................................................................................................................................................................................................................................................. done Filling 83443 nlabel 4990 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.034701.label Connecting and filling vertices in path at fillseed 81048 Finding path...................................................................................................................... done Filling 81048 nlabel 5215 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.034801.label Connecting and filling vertices in path at fillseed 78844 Finding path.................................................................................................................................................................................................................... done Filling 78844 nlabel 6347 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.034901.label Connecting and filling vertices in path at fillseed 81818 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 81818 nlabel 5363 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.035001.label Connecting and filling vertices in path at fillseed 81548 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 81548 nlabel 8734 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.035101.label Connecting and filling vertices in path at fillseed 81161 Finding path................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 81161 nlabel 9341 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.035201.label Connecting and filling vertices in path at fillseed 77773 Finding path........................................................................................................................................................................................................... done Filling 77773 nlabel 6579 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.035301.label Connecting and filling vertices in path at fillseed 81641 Finding path......................................................................................................................................................... done Filling 81641 nlabel 3781 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.035401.label Connecting and filling vertices in path at fillseed 85477 Finding path......................................................................................................................................................................................................................................................................................................................... done Filling 85477 nlabel 7072 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.035501.label Connecting and filling vertices in path at fillseed 86760 Finding path.................................................................................................................... done Filling 86760 nlabel 5527 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.035601.label Connecting and filling vertices in path at fillseed 84605 Finding path........................................................................................................................................................................... done Filling 84605 nlabel 6759 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.035701.label Connecting and filling vertices in path at fillseed 82102 Finding path............................................................................................................................................................................................................................................... done Filling 82102 nlabel 8045 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.035801.label Connecting and filling vertices in path at fillseed 82920 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 82920 nlabel 15937 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.035901.label Connecting and filling vertices in path at fillseed 84755 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 84755 nlabel 9291 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.036001.label Connecting and filling vertices in path at fillseed 83545 Finding path..................................................................................................................................................................................................................... done Filling 83545 nlabel 7616 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.036101.label Connecting and filling vertices in path at fillseed 82462 Finding path.............................................................................................................................................................................................. done Filling 82462 nlabel 6264 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.036201.label Connecting and filling vertices in path at fillseed 84289 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 84289 nlabel 13817 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.036301.label Connecting and filling vertices in path at fillseed 85655 Finding path......................................................................................................................................................... done Filling 85655 nlabel 4426 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.036401.label Connecting and filling vertices in path at fillseed 90064 Finding path....................................................................................................................................... done Filling 90064 nlabel 5205 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.036501.label Connecting and filling vertices in path at fillseed 84406 Finding path............................................................................................................................................................................................................................................................................................................... done Filling 84406 nlabel 8215 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.036601.label Connecting and filling vertices in path at fillseed 86124 Finding path......................................................................................... done Filling 86124 nlabel 3798 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.036701.label Connecting and filling vertices in path at fillseed 82734 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 82734 nlabel 8784 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.036801.label Connecting and filling vertices in path at fillseed 83633 Finding path...................................................................................................................................................................................................................................................................................................................................................................................... done Filling 83633 nlabel 9998 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.036901.label Connecting and filling vertices in path at fillseed 85671 Finding path............................................................................................................................................................................................................ done Filling 85671 nlabel 7747 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.037001.label Connecting and filling vertices in path at fillseed 83643 Finding path.............................................................................................................................................................. done Filling 83643 nlabel 6338 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.037101.label Connecting and filling vertices in path at fillseed 86457 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 86457 nlabel 14243 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.037201.label Connecting and filling vertices in path at fillseed 86700 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 86700 nlabel 4968 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.037301.label Connecting and filling vertices in path at fillseed 91065 Finding path...................................................................................................................... done Filling 91065 nlabel 5443 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.037401.label Connecting and filling vertices in path at fillseed 89028 Finding path......................................................................................................................................................................................................................... done Filling 89028 nlabel 6833 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.037501.label Connecting and filling vertices in path at fillseed 88535 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 88535 nlabel 5584 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.037601.label Connecting and filling vertices in path at fillseed 89452 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 89452 nlabel 15560 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.037701.label Connecting and filling vertices in path at fillseed 87866 Finding path.................................................................................................................................. done Filling 87866 nlabel 4809 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.037801.label Connecting and filling vertices in path at fillseed 87877 Finding path............................................................................................................................................................................................................................................ done Filling 87877 nlabel 7848 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.037901.label Connecting and filling vertices in path at fillseed 89034 Finding path....................................................................................................................................................................................................... done Filling 89034 nlabel 4781 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.038001.label Connecting and filling vertices in path at fillseed 88785 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 88785 nlabel 12361 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.038101.label Connecting and filling vertices in path at fillseed 85915 Finding path.................................................................................................................................................................................................................................................................................................................... done Filling 85915 nlabel 9527 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.038201.label Connecting and filling vertices in path at fillseed 92087 Finding path............................................................................................................... done Filling 92087 nlabel 5165 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.038301.label Connecting and filling vertices in path at fillseed 90102 Finding path....................................................................................................................................................................................................... done Filling 90102 nlabel 6525 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.038401.label Connecting and filling vertices in path at fillseed 91623 Finding path............................................................................................................................................................................................................................................................................................................................................ done Filling 91623 nlabel 6587 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.038501.label Connecting and filling vertices in path at fillseed 89850 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 89850 nlabel 12618 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.038601.label Connecting and filling vertices in path at fillseed 88108 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 88108 nlabel 11211 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.038701.label Connecting and filling vertices in path at fillseed 97269 Finding path................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 97269 nlabel 4585 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.038801.label Connecting and filling vertices in path at fillseed 90268 Finding path................................................................................................................................................................. done Filling 90268 nlabel 5610 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.038901.label Connecting and filling vertices in path at fillseed 90427 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 90427 nlabel 15231 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.039001.label Connecting and filling vertices in path at fillseed 85902 Finding path.......................................................................................................................................................................................................................................................................................................................................................................... done Filling 85902 nlabel 9894 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.039101.label Connecting and filling vertices in path at fillseed 94224 Finding path.................................................................................................................................................................................................................................................................................................................................................................................... done Filling 94224 nlabel 9941 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.039201.label Connecting and filling vertices in path at fillseed 93048 Finding path................................................................................................................................................................................................................................................................................................................................................... done Filling 93048 nlabel 8219 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.039301.label Connecting and filling vertices in path at fillseed 91120 Finding path................................................................................................................................................................................................................................................ done Filling 91120 nlabel 4804 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.039401.label Connecting and filling vertices in path at fillseed 91831 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 91831 nlabel 14176 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.039501.label Connecting and filling vertices in path at fillseed 91311 Finding path.............................................................................................................................................................................................................................................................................................................. done Filling 91311 nlabel 9409 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.039601.label Connecting and filling vertices in path at fillseed 88112 Finding path......................................................................................................................................................................................................................................................................................................................................................................... done Filling 88112 nlabel 10620 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.039701.label Connecting and filling vertices in path at fillseed 92131 Finding path.......................................................................................................................................................................................... done Filling 92131 nlabel 7583 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.039801.label Connecting and filling vertices in path at fillseed 87974 Finding path.......................................................................................................................................... done Filling 87974 nlabel 6151 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.039901.label Connecting and filling vertices in path at fillseed 93493 Finding path........................................................................................................................................ done Filling 93493 nlabel 4794 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.040001.label Connecting and filling vertices in path at fillseed 91916 Finding path........................................................................................................................................................................................................................................................................ done Filling 91916 nlabel 6042 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.040101.label Connecting and filling vertices in path at fillseed 95284 Finding path................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 95284 nlabel 11535 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.040201.label Connecting and filling vertices in path at fillseed 91109 Finding path................................................................................................................................................................................................................................................... done Filling 91109 nlabel 7398 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.040301.label Connecting and filling vertices in path at fillseed 94381 Finding path............................................................................................................................................................................. done Filling 94381 nlabel 5471 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.040401.label Connecting and filling vertices in path at fillseed 93713 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 93713 nlabel 14091 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.040501.label Connecting and filling vertices in path at fillseed 96453 Finding path.................................................................................................................................................................................................................................................................................................................................................................... done Filling 96453 nlabel 10136 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.040601.label Connecting and filling vertices in path at fillseed 99354 Finding path................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 99354 nlabel 3570 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.040701.label Connecting and filling vertices in path at fillseed 93335 Finding path........................................................................................................................................................................................... done Filling 93335 nlabel 5975 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.040801.label Connecting and filling vertices in path at fillseed 93682 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 93682 nlabel 13922 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.040901.label Connecting and filling vertices in path at fillseed 96188 Finding path......................................................................................................................................................................... done Filling 96188 nlabel 5057 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.041001.label Connecting and filling vertices in path at fillseed 98362 Finding path................................................................................................................... done Filling 98362 nlabel 3790 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.041101.label Connecting and filling vertices in path at fillseed 94850 Finding path......................................................................................................................................................................................................................................................................................................................................... done Filling 94850 nlabel 8375 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.041201.label Connecting and filling vertices in path at fillseed 95723 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 95723 nlabel 5786 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.041301.label Connecting and filling vertices in path at fillseed 93393 Finding path............................................................................................................................................................................................................................................................................... done Filling 93393 nlabel 8782 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.041401.label Connecting and filling vertices in path at fillseed 100475 Finding path............................................................................ done Filling 100475 nlabel 4352 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.041501.label Connecting and filling vertices in path at fillseed 98267 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................. done Filling 98267 nlabel 6604 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.041601.label Connecting and filling vertices in path at fillseed 97637 Finding path...................................................................................................................................................................................... done Filling 97637 nlabel 4872 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.041701.label Connecting and filling vertices in path at fillseed 131068 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 131068 nlabel 14732 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.041801.label Connecting and filling vertices in path at fillseed 97418 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 97418 nlabel 11190 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.041901.label Connecting and filling vertices in path at fillseed 98293 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 98293 nlabel 6606 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.042001.label Connecting and filling vertices in path at fillseed 97617 Finding path.................................................................................................................................................. done Filling 97617 nlabel 4782 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.042101.label Connecting and filling vertices in path at fillseed 96730 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 96730 nlabel 15148 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.042201.label Connecting and filling vertices in path at fillseed 98347 Finding path..................................................................................................................................................... done Filling 98347 nlabel 4596 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.042301.label Connecting and filling vertices in path at fillseed 100491 Finding path................................................................................ done Filling 100491 nlabel 3101 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.042401.label Connecting and filling vertices in path at fillseed 97286 Finding path....................................................................................................................................................................... done Filling 97286 nlabel 4874 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.042501.label Connecting and filling vertices in path at fillseed 97716 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 97716 nlabel 15912 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.042601.label Connecting and filling vertices in path at fillseed 101455 Finding path.................................................................................................................................................................................................................................. done Filling 101455 nlabel 5112 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.042701.label Connecting and filling vertices in path at fillseed 97317 Finding path.................................................................................................................................................................................................................... done Filling 97317 nlabel 6056 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.042801.label Connecting and filling vertices in path at fillseed 98196 Finding path................................................................................................................................................................................................................................................................................................................................................ done Filling 98196 nlabel 6898 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.042901.label Connecting and filling vertices in path at fillseed 101156 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 101156 nlabel 5823 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.043001.label Connecting and filling vertices in path at fillseed 102951 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 102951 nlabel 14150 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.043101.label Connecting and filling vertices in path at fillseed 102547 Finding path............................................................................. done Filling 102547 nlabel 4102 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.043201.label Connecting and filling vertices in path at fillseed 101485 Finding path................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 101485 nlabel 6934 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.043301.label Connecting and filling vertices in path at fillseed 100825 Finding path...................................................................................................................................... done Filling 100825 nlabel 5468 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.043401.label Connecting and filling vertices in path at fillseed 97831 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 97831 nlabel 14727 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.043501.label Connecting and filling vertices in path at fillseed 97709 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 97709 nlabel 15071 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.043601.label Connecting and filling vertices in path at fillseed 102532 Finding path........................................................................................... done Filling 102532 nlabel 4033 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.043701.label Connecting and filling vertices in path at fillseed 104262 Finding path......................................................................................................................................................................................................................................................................................................................................................................... done Filling 104262 nlabel 5636 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.043801.label Connecting and filling vertices in path at fillseed 102724 Finding path.................................................................................................................................................. done Filling 102724 nlabel 5629 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.043901.label Connecting and filling vertices in path at fillseed 101186 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 101186 nlabel 14648 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.044001.label Connecting and filling vertices in path at fillseed 99299 Finding path...................................................................................................................................................................... done Filling 99299 nlabel 4190 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.044101.label Connecting and filling vertices in path at fillseed 102586 Finding path......................................................................................................................................................................................... done Filling 102586 nlabel 6004 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.044201.label Connecting and filling vertices in path at fillseed 100518 Finding path.................................................................................................................................................................................................................... done Filling 100518 nlabel 5044 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.044301.label Connecting and filling vertices in path at fillseed 103835 Finding path............................................................................................................................................. done Filling 103835 nlabel 3944 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.044401.label Connecting and filling vertices in path at fillseed 99941 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 99941 nlabel 15667 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.044501.label Connecting and filling vertices in path at fillseed 104203 Finding path.................................................................................................................................................... done Filling 104203 nlabel 4060 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.044601.label Connecting and filling vertices in path at fillseed 102600 Finding path.......................................................................................................................................................................................................................................... done Filling 102600 nlabel 6555 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.044701.label Connecting and filling vertices in path at fillseed 101651 Finding path............................................................................................................................................................................ done Filling 101651 nlabel 5288 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.044801.label Connecting and filling vertices in path at fillseed 103951 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 103951 nlabel 4976 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.044901.label Connecting and filling vertices in path at fillseed 106305 Finding path..................................................................................................................................................................................................................................................................... done Filling 106305 nlabel 8137 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.045001.label Connecting and filling vertices in path at fillseed 101727 Finding path......................................................................................................................................................................................................................................................................... done Filling 101727 nlabel 8102 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.045101.label Connecting and filling vertices in path at fillseed 101609 Finding path.................................................................................................................................................................................................. done Filling 101609 nlabel 6579 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.045201.label Connecting and filling vertices in path at fillseed 131342 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 131342 nlabel 6070 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.045301.label Connecting and filling vertices in path at fillseed 105471 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 105471 nlabel 15506 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.045401.label Connecting and filling vertices in path at fillseed 105006 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 105006 nlabel 7333 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.045501.label Connecting and filling vertices in path at fillseed 101727 Finding path................................................................................................................................................................................................................................................................................... done Filling 101727 nlabel 8105 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.045601.label Connecting and filling vertices in path at fillseed 131306 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 131306 nlabel 4071 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.045701.label Connecting and filling vertices in path at fillseed 108242 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 108242 nlabel 6139 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.045801.label Connecting and filling vertices in path at fillseed 106410 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 106410 nlabel 13002 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.045901.label Connecting and filling vertices in path at fillseed 104977 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 104977 nlabel 7756 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.046001.label Connecting and filling vertices in path at fillseed 105193 Finding path........................................................................................................................................................................................................................................................................................ done Filling 105193 nlabel 6660 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.046101.label Connecting and filling vertices in path at fillseed 107611 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 107611 nlabel 6462 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.046201.label Connecting and filling vertices in path at fillseed 106359 Finding path........................................................................................................................ done Filling 106359 nlabel 5619 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.046301.label Connecting and filling vertices in path at fillseed 110515 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 110515 nlabel 14902 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.046401.label Connecting and filling vertices in path at fillseed 103418 Finding path.................................................................................................... done Filling 103418 nlabel 3516 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.046501.label Connecting and filling vertices in path at fillseed 106033 Finding path............................................................................................................................................................................. done Filling 106033 nlabel 6632 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.046601.label Connecting and filling vertices in path at fillseed 107139 Finding path.................................................................................................................................. done Filling 107139 nlabel 5415 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.046701.label Connecting and filling vertices in path at fillseed 109632 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 109632 nlabel 15832 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.046801.label Connecting and filling vertices in path at fillseed 106842 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 106842 nlabel 6110 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.046901.label Connecting and filling vertices in path at fillseed 106052 Finding path......................................................................................................................................................... done Filling 106052 nlabel 5982 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.047001.label Connecting and filling vertices in path at fillseed 108489 Finding path........................................................................................................................... done Filling 108489 nlabel 4962 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.047101.label Connecting and filling vertices in path at fillseed 111369 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 111369 nlabel 13611 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.047201.label Connecting and filling vertices in path at fillseed 107061 Finding path.................................................................................................................................................................................................................................. done Filling 107061 nlabel 8953 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.047301.label Connecting and filling vertices in path at fillseed 107693 Finding path.................................................................................................................................. done Filling 107693 nlabel 5463 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.047401.label Connecting and filling vertices in path at fillseed 107776 Finding path.............................................................................................................................................. done Filling 107776 nlabel 5577 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.047501.label Connecting and filling vertices in path at fillseed 111353 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 111353 nlabel 15267 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.047601.label Connecting and filling vertices in path at fillseed 106807 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 106807 nlabel 6161 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.047701.label Connecting and filling vertices in path at fillseed 108448 Finding path............................................................................................................................................................................. done Filling 108448 nlabel 6288 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.047801.label Connecting and filling vertices in path at fillseed 109246 Finding path................................................................................................................................................................................................................................................................... done Filling 109246 nlabel 5079 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.047901.label Connecting and filling vertices in path at fillseed 108031 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 108031 nlabel 15454 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.048001.label Connecting and filling vertices in path at fillseed 106808 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 106808 nlabel 6260 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.048101.label Connecting and filling vertices in path at fillseed 107718 Finding path.............................................................................................................................................................................................................................................. done Filling 107718 nlabel 6733 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.048201.label Connecting and filling vertices in path at fillseed 110002 Finding path.................................................................................................................................................................................................... done Filling 110002 nlabel 5604 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.048301.label Connecting and filling vertices in path at fillseed 110548 Finding path........................................................................................................................................................................................................................................................................................................................................................................................ done Filling 110548 nlabel 5222 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.048401.label Connecting and filling vertices in path at fillseed 109005 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 109005 nlabel 11989 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.048501.label Connecting and filling vertices in path at fillseed 111712 Finding path...................................................................................................................................................................................................................................................................................................................................................................... done Filling 111712 nlabel 7329 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.048601.label Connecting and filling vertices in path at fillseed 109965 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 109965 nlabel 4470 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.048701.label Connecting and filling vertices in path at fillseed 111266 Finding path........................................................................................................................................ done Filling 111266 nlabel 5641 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.048801.label Connecting and filling vertices in path at fillseed 109005 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 109005 nlabel 11650 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.048901.label Connecting and filling vertices in path at fillseed 110928 Finding path........................................................................................................................................................................................................................................................................ done Filling 110928 nlabel 8618 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.049001.label Connecting and filling vertices in path at fillseed 109975 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 109975 nlabel 4214 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.049101.label Connecting and filling vertices in path at fillseed 113274 Finding path........................................................................................................................................................... done Filling 113274 nlabel 5689 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.049201.label Connecting and filling vertices in path at fillseed 112143 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 112143 nlabel 14473 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.049301.label Connecting and filling vertices in path at fillseed 110154 Finding path..................................................................................................................................................................................................................................................... done Filling 110154 nlabel 9611 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.049401.label Connecting and filling vertices in path at fillseed 113143 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 113143 nlabel 4430 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.049501.label Connecting and filling vertices in path at fillseed 113941 Finding path.......................................................................................................................................................... done Filling 113941 nlabel 5893 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.049601.label Connecting and filling vertices in path at fillseed 113770 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 113770 nlabel 5390 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.049701.label Connecting and filling vertices in path at fillseed 109833 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 109833 nlabel 11802 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.049801.label Connecting and filling vertices in path at fillseed 111743 Finding path................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 111743 nlabel 7367 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.049901.label Connecting and filling vertices in path at fillseed 111666 Finding path..................................................................................................................................... done Filling 111666 nlabel 5201 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.050001.label Connecting and filling vertices in path at fillseed 113771 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 113771 nlabel 5140 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.050101.label Connecting and filling vertices in path at fillseed 110682 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 110682 nlabel 8557 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.050201.label Connecting and filling vertices in path at fillseed 111762 Finding path...................................................................................................................................................................................................................................................................................................................................................................................... done Filling 111762 nlabel 8145 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.050301.label Connecting and filling vertices in path at fillseed 111637 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 111637 nlabel 4910 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.050401.label Connecting and filling vertices in path at fillseed 112706 Finding path.................................................................................................................................................. done Filling 112706 nlabel 5746 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.050501.label Connecting and filling vertices in path at fillseed 111891 Finding path..................................................................................................................................................................................................................................................................................................................................... done Filling 111891 nlabel 9821 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.050601.label Connecting and filling vertices in path at fillseed 111795 Finding path......................................................................................................................................................................................................................................................................................................... done Filling 111795 nlabel 7897 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.050701.label Connecting and filling vertices in path at fillseed 112465 Finding path...................................................................................................................................................................................................... done Filling 112465 nlabel 5518 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.050801.label Connecting and filling vertices in path at fillseed 115675 Finding path.......................................................................................................................................................................... done Filling 115675 nlabel 5684 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.050901.label Connecting and filling vertices in path at fillseed 116360 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 116360 nlabel 9058 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.051001.label Connecting and filling vertices in path at fillseed 110738 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 110738 nlabel 5965 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.051101.label Connecting and filling vertices in path at fillseed 112435 Finding path................................................................................................................................................................................................................................................................................................................................................................................ done Filling 112435 nlabel 2229 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.051201.label Connecting and filling vertices in path at fillseed 113414 Finding path............................................................................................................................................. done Filling 113414 nlabel 5699 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.051301.label Connecting and filling vertices in path at fillseed 116002 Finding path............................................................................................................................................................................................................................................................................................... done Filling 116002 nlabel 8536 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.051401.label Connecting and filling vertices in path at fillseed 110676 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 110676 nlabel 9036 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.051501.label Connecting and filling vertices in path at fillseed 114521 Finding path................................................................................................................................................................................................ done Filling 114521 nlabel 6008 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.051601.label Connecting and filling vertices in path at fillseed 113137 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 113137 nlabel 4892 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.051701.label Connecting and filling vertices in path at fillseed 114035 Finding path............................................................................................................................................... done Filling 114035 nlabel 5725 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.051801.label Connecting and filling vertices in path at fillseed 116026 Finding path..................................................................................................................................................................................................................................................... done Filling 116026 nlabel 7940 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.051901.label Connecting and filling vertices in path at fillseed 115184 Finding path.......................................................................................................................................................... done Filling 115184 nlabel 6323 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.052001.label Connecting and filling vertices in path at fillseed 112400 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 112400 nlabel 6004 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.052101.label Connecting and filling vertices in path at fillseed 115168 Finding path.................................................................................................................................................................................. done Filling 115168 nlabel 5395 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.052201.label Connecting and filling vertices in path at fillseed 116934 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 116934 nlabel 9276 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.052301.label Connecting and filling vertices in path at fillseed 114423 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 114423 nlabel 6402 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.052401.label Connecting and filling vertices in path at fillseed 115103 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 115103 nlabel 4471 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.052501.label Connecting and filling vertices in path at fillseed 131609 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 131609 nlabel 6237 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.052601.label Connecting and filling vertices in path at fillseed 118461 Finding path......................................................................................................................................... done Filling 118461 nlabel 5375 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.052701.label Connecting and filling vertices in path at fillseed 116598 Finding path.................................................................................................................................................................................................................................................. done Filling 116598 nlabel 7545 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.052801.label Connecting and filling vertices in path at fillseed 115833 Finding path.................................................................................................................................................................... done Filling 115833 nlabel 6413 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.052901.label Connecting and filling vertices in path at fillseed 119256 Finding path........................................................................................................................................................... done Filling 119256 nlabel 5243 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.053001.label Connecting and filling vertices in path at fillseed 119238 Finding path............................................................................................................................................................................................................................................................................................................................................................................ done Filling 119238 nlabel 5355 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.053101.label Connecting and filling vertices in path at fillseed 117301 Finding path............................................................................................................................................................................................................................. done Filling 117301 nlabel 7446 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.053201.label Connecting and filling vertices in path at fillseed 131480 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 131480 nlabel 6132 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.053301.label Connecting and filling vertices in path at fillseed 116517 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 116517 nlabel 6328 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.053401.label Connecting and filling vertices in path at fillseed 131570 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 131570 nlabel 6451 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.053501.label Connecting and filling vertices in path at fillseed 119133 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 119133 nlabel 6214 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.053601.label Connecting and filling vertices in path at fillseed 117445 Finding path.......................................................................................................................................................................................................................................................... done Filling 117445 nlabel 6371 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.053701.label Connecting and filling vertices in path at fillseed 131473 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 131473 nlabel 6012 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.053801.label Connecting and filling vertices in path at fillseed 117236 Finding path................................................................................................................................................................................................................................ done Filling 117236 nlabel 7073 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.053901.label Connecting and filling vertices in path at fillseed 117656 Finding path.......................................................................................... done Filling 117656 nlabel 4888 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.054001.label Connecting and filling vertices in path at fillseed 120261 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 120261 nlabel 8272 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.054101.label Connecting and filling vertices in path at fillseed 115803 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 115803 nlabel 7231 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.054201.label Connecting and filling vertices in path at fillseed 118608 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 118608 nlabel 6103 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.054301.label Connecting and filling vertices in path at fillseed 119856 Finding path....................................................................................................................................... done Filling 119856 nlabel 5257 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.054401.label Connecting and filling vertices in path at fillseed 120369 Finding path................................................................................................................................................................................................................................................................................................................................................................. done Filling 120369 nlabel 4583 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.054501.label Connecting and filling vertices in path at fillseed 119397 Finding path............................................................................................................................................................................................................. done Filling 119397 nlabel 7446 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.054601.label Connecting and filling vertices in path at fillseed 131564 Finding path.............................................................................................................................................................................................................................................................................................................................................. done Filling 131564 nlabel 5199 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.054701.label Connecting and filling vertices in path at fillseed 120246 Finding path...................................................................................................................................................... done Filling 120246 nlabel 5226 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.054801.label Connecting and filling vertices in path at fillseed 121860 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 121860 nlabel 7117 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.054901.label Connecting and filling vertices in path at fillseed 121297 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 121297 nlabel 5814 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.055001.label Connecting and filling vertices in path at fillseed 118225 Finding path.............................................................................................................................................. done Filling 118225 nlabel 5945 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.055101.label Connecting and filling vertices in path at fillseed 121060 Finding path............................................................................................................................................................. done Filling 121060 nlabel 5854 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.055201.label Connecting and filling vertices in path at fillseed 121882 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 121882 nlabel 6481 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.055301.label Connecting and filling vertices in path at fillseed 121397 Finding path................................................................................................................................................................. done Filling 121397 nlabel 4951 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.055401.label Connecting and filling vertices in path at fillseed 121183 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 121183 nlabel 7103 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.055501.label Connecting and filling vertices in path at fillseed 120409 Finding path........................................................................................................................................................................................ done Filling 120409 nlabel 6733 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.055601.label Connecting and filling vertices in path at fillseed 121898 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 121898 nlabel 5883 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.055701.label Connecting and filling vertices in path at fillseed 121380 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 121380 nlabel 4247 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.055801.label Connecting and filling vertices in path at fillseed 122616 Finding path............................................................................................................................................................................................... done Filling 122616 nlabel 7424 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.055901.label Connecting and filling vertices in path at fillseed 122496 Finding path................................................................................................................................................................................... done Filling 122496 nlabel 5601 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.056001.label Connecting and filling vertices in path at fillseed 121715 Finding path............................................................................................................................................................................. done Filling 121715 nlabel 5746 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.056101.label Connecting and filling vertices in path at fillseed 123017 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 123017 nlabel 6901 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.056201.label Connecting and filling vertices in path at fillseed 122423 Finding path............................................................................................................................................................................................................................................................................................................................................................................... done Filling 122423 nlabel 5531 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.056301.label Connecting and filling vertices in path at fillseed 124839 Finding path........................................................................................................................... done Filling 124839 nlabel 5793 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.056401.label Connecting and filling vertices in path at fillseed 123546 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 123546 nlabel 6982 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.056501.label Connecting and filling vertices in path at fillseed 121268 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 121268 nlabel 5916 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.056601.label Connecting and filling vertices in path at fillseed 124805 Finding path................................................................................................................................................... done Filling 124805 nlabel 5884 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.056701.label Connecting and filling vertices in path at fillseed 124434 Finding path................................................................................................................................................................. done Filling 124434 nlabel 6801 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.056801.label Connecting and filling vertices in path at fillseed 121430 Finding path................................................................................................................................................................................................. done Filling 121430 nlabel 6565 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.056901.label Connecting and filling vertices in path at fillseed 121687 Finding path................................................................................................................................................................... done Filling 121687 nlabel 5898 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.057001.label Connecting and filling vertices in path at fillseed 124082 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 124082 nlabel 6604 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.057101.label Connecting and filling vertices in path at fillseed 122508 Finding path.................................................................................................................................................................... done Filling 122508 nlabel 6914 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.057201.label Connecting and filling vertices in path at fillseed 126273 Finding path................................................................................................................................................. done Filling 126273 nlabel 5926 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.057301.label Connecting and filling vertices in path at fillseed 125394 Finding path............................................................................................................................................................ done Filling 125394 nlabel 6600 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.057401.label Connecting and filling vertices in path at fillseed 126027 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 126027 nlabel 6367 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.057501.label Connecting and filling vertices in path at fillseed 123594 Finding path...................................................................................................................................................................................................................................................... done Filling 123594 nlabel 5624 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.057601.label Connecting and filling vertices in path at fillseed 126980 Finding path..................................................................................................................................... done Filling 126980 nlabel 5591 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.057701.label Connecting and filling vertices in path at fillseed 124807 Finding path...................................................................................................................................................................................................................................... done Filling 124807 nlabel 7783 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.057801.label Connecting and filling vertices in path at fillseed 123607 Finding path................................................................................................................................................................................................................. done Filling 123607 nlabel 6239 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.057901.label Connecting and filling vertices in path at fillseed 126738 Finding path............................................................................................................................ done Filling 126738 nlabel 5986 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.058001.label Connecting and filling vertices in path at fillseed 125323 Finding path......................................................................................................................................... done Filling 125323 nlabel 6672 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.058101.label Connecting and filling vertices in path at fillseed 125183 Finding path....................................................................................................................................................................................................................... done Filling 125183 nlabel 6672 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.058201.label Connecting and filling vertices in path at fillseed 126586 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................. done Filling 126586 nlabel 4276 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.058301.label Connecting and filling vertices in path at fillseed 131885 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 131885 nlabel 7798 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.058401.label Connecting and filling vertices in path at fillseed 125578 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 125578 nlabel 6337 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.058501.label Connecting and filling vertices in path at fillseed 127102 Finding path........................................................................................................................... done Filling 127102 nlabel 5090 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.058601.label Connecting and filling vertices in path at fillseed 126266 Finding path............................................................................................................................................ done Filling 126266 nlabel 6665 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.058701.label Connecting and filling vertices in path at fillseed 126629 Finding path........................................................................................................................................................................................... done Filling 126629 nlabel 6279 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.058801.label Connecting and filling vertices in path at fillseed 128267 Finding path................................................................................................................................. done Filling 128267 nlabel 5907 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.058901.label Connecting and filling vertices in path at fillseed 126267 Finding path.................................................................................................................................................................................... done Filling 126267 nlabel 7386 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.059001.label Connecting and filling vertices in path at fillseed 126620 Finding path....................................................................................................................................................................................................................................................................................... done Filling 126620 nlabel 5630 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.059101.label Connecting and filling vertices in path at fillseed 127937 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 127937 nlabel 3902 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.059201.label Connecting and filling vertices in path at fillseed 127865 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 127865 nlabel 6070 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.059301.label Connecting and filling vertices in path at fillseed 127075 Finding path.......................................................................................................................... done Filling 127075 nlabel 4234 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.059401.label Connecting and filling vertices in path at fillseed 127701 Finding path......................................................................................................................................................................... done Filling 127701 nlabel 5334 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.059501.label Connecting and filling vertices in path at fillseed 127570 Finding path...................................................................................................................................................................................... done Filling 127570 nlabel 6040 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.059601.label Connecting and filling vertices in path at fillseed 127558 Finding path........................................................................................................................................ done Filling 127558 nlabel 4750 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.059701.label Connecting and filling vertices in path at fillseed 128129 Finding path........................................................................................................................................ done Filling 128129 nlabel 5911 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.059801.label Connecting and filling vertices in path at fillseed 127539 Finding path....................................................................................................................................................................................................................... done Filling 127539 nlabel 6626 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.059901.label Connecting and filling vertices in path at fillseed 129630 Finding path............................................................................................................................................................................................................................................. done Filling 129630 nlabel 4919 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.060001.label Connecting and filling vertices in path at fillseed 127646 Finding path.................................................................................................................................. done Filling 127646 nlabel 6494 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.060101.label Connecting and filling vertices in path at fillseed 127958 Finding path................................................................................................................................................................................................................ done Filling 127958 nlabel 4605 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.060201.label Connecting and filling vertices in path at fillseed 128512 Finding path.............................................................................................................................................................. done Filling 128512 nlabel 6164 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.060301.label Connecting and filling vertices in path at fillseed 127548 Finding path.................................................................................................................................................................................... done Filling 127548 nlabel 6371 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.060401.label Connecting and filling vertices in path at fillseed 129905 Finding path................................................................................................................................... done Filling 129905 nlabel 4909 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.060501.label Connecting and filling vertices in path at fillseed 127647 Finding path.................................................................................................................................................... done Filling 127647 nlabel 5827 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.060601.label Connecting and filling vertices in path at fillseed 127968 Finding path..................................................................................................................................................................................................... done Filling 127968 nlabel 5950 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.060701.label Connecting and filling vertices in path at fillseed 129406 Finding path................................................................................. done Filling 129406 nlabel 3304 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.060801.label Connecting and filling vertices in path at fillseed 128458 Finding path.................................................................................................................................................... done Filling 128458 nlabel 5959 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.060901.label Connecting and filling vertices in path at fillseed 129410 Finding path.................................................................................................................................................................................... done Filling 129410 nlabel 6586 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.061001.label Connecting and filling vertices in path at fillseed 129392 Finding path....................................................................................................... done Filling 129392 nlabel 3282 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.061101.label Connecting and filling vertices in path at fillseed 129361 Finding path....................................................................................................................................... done Filling 129361 nlabel 5432 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.061201.label Connecting and filling vertices in path at fillseed 129695 Finding path................................................................................................................................................ done Filling 129695 nlabel 4514 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.061301.label Connecting and filling vertices in path at fillseed 129594 Finding path.................................................................................................................................... done Filling 129594 nlabel 5636 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.061401.label Connecting and filling vertices in path at fillseed 129219 Finding path....................................................................................................................... done Filling 129219 nlabel 5523 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.061501.label Connecting and filling vertices in path at fillseed 129138 Finding path................................................................................................................................. done Filling 129138 nlabel 5935 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.061601.label Connecting and filling vertices in path at fillseed 130015 Finding path.............................................................................................................................................................................................................. done Filling 130015 nlabel 5057 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.061701.label Connecting and filling vertices in path at fillseed 130088 Finding path......................................................................................................................................................... done Filling 130088 nlabel 4533 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.061801.label Connecting and filling vertices in path at fillseed 129733 Finding path..................................................................................................................................................................... done Filling 129733 nlabel 5647 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.061901.label Connecting and filling vertices in path at fillseed 130270 Finding path.......................................................................................................................................... done Filling 130270 nlabel 4731 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.062001.label Connecting and filling vertices in path at fillseed 130041 Finding path................................................................................................................................... done Filling 130041 nlabel 5296 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.062101.label Connecting and filling vertices in path at fillseed 130229 Finding path......................................................................................................................................................................................... done Filling 130229 nlabel 5572 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.062201.label Connecting and filling vertices in path at fillseed 130328 Finding path........................................................................................................................................ done Filling 130328 nlabel 5015 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.062301.label Connecting and filling vertices in path at fillseed 130275 Finding path........................................................................................................................... done Filling 130275 nlabel 5683 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.062401.label Connecting and filling vertices in path at fillseed 131981 Finding path................................................................................................. done Filling 131981 nlabel 3417 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.062501.label Connecting and filling vertices in path at fillseed 130437 Finding path........................................................................................................................... done Filling 130437 nlabel 5595 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.062601.label Connecting and filling vertices in path at fillseed 130541 Finding path..................................................................................................... done Filling 130541 nlabel 3338 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.062701.label Connecting and filling vertices in path at fillseed 130633 Finding path........................................................................................................................ done Filling 130633 nlabel 4785 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.062801.label Connecting and filling vertices in path at fillseed 130605 Finding path............................................................................................................................. done Filling 130605 nlabel 4484 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.062901.label ================= compute_lgi('rh.pial','rh.pial-outer-smoothed','/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial-outer-smoothed-normals.asc',100,25,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial'); exit ================= 2015-12-15 04:15:36.713 MATLAB_maci64[31637:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> loading datas ... FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: rh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.02 sec) FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: rh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.05 sec) preparing outer mesh structure ... face 5000 / 125928 face 10000 / 125928 face 15000 / 125928 face 20000 / 125928 face 25000 / 125928 face 30000 / 125928 face 35000 / 125928 face 40000 / 125928 face 45000 / 125928 face 50000 / 125928 face 55000 / 125928 face 60000 / 125928 face 65000 / 125928 face 70000 / 125928 face 75000 / 125928 face 80000 / 125928 face 85000 / 125928 face 90000 / 125928 face 95000 / 125928 face 100000 / 125928 face 105000 / 125928 face 110000 / 125928 face 115000 / 125928 face 120000 / 125928 face 125000 / 125928 reading normals info ... mesh_outer = vertices: [62966x3 double] faces: [125928x3 double] facesOfVertex: [62966x1 struct] vertexNormal: [62966x3 double] preparing pial mesh structure ... face 5000 / 263990 face 10000 / 263990 face 15000 / 263990 face 20000 / 263990 face 25000 / 263990 face 30000 / 263990 face 35000 / 263990 face 40000 / 263990 face 45000 / 263990 face 50000 / 263990 face 55000 / 263990 face 60000 / 263990 face 65000 / 263990 face 70000 / 263990 face 75000 / 263990 face 80000 / 263990 face 85000 / 263990 face 90000 / 263990 face 95000 / 263990 face 100000 / 263990 face 105000 / 263990 face 110000 / 263990 face 115000 / 263990 face 120000 / 263990 face 125000 / 263990 face 130000 / 263990 face 135000 / 263990 face 140000 / 263990 face 145000 / 263990 face 150000 / 263990 face 155000 / 263990 face 160000 / 263990 face 165000 / 263990 face 170000 / 263990 face 175000 / 263990 face 180000 / 263990 face 185000 / 263990 face 190000 / 263990 face 195000 / 263990 face 200000 / 263990 face 205000 / 263990 face 210000 / 263990 face 215000 / 263990 face 220000 / 263990 face 225000 / 263990 face 230000 / 263990 face 235000 / 263990 face 240000 / 263990 face 245000 / 263990 face 250000 / 263990 face 255000 / 263990 face 260000 / 263990 mesh_total = vertices: [131997x3 double] faces: [263990x3 double] facesOfVertex: [131997x1 struct] ...searching for mesh edges...done (191.50 sec). loading outer area information... lGI for vertex number 1 of the outer mesh is 2.3979 ratio saved at 1 lGI for vertex number 101 of the outer mesh is 2.573 lGI for vertex number 201 of the outer mesh is 2.4449 lGI for vertex number 301 of the outer mesh is 2.5156 lGI for vertex number 401 of the outer mesh is 2.3983 lGI for vertex number 501 of the outer mesh is 1.7884 lGI for vertex number 601 of the outer mesh is 2.2414 lGI for vertex number 701 of the outer mesh is 2.9168 lGI for vertex number 801 of the outer mesh is 1.8346 lGI for vertex number 901 of the outer mesh is 2.77 lGI for vertex number 1001 of the outer mesh is 2.1499 lGI for vertex number 1101 of the outer mesh is 2.4977 lGI for vertex number 1201 of the outer mesh is 2.0254 lGI for vertex number 1301 of the outer mesh is 2.4692 lGI for vertex number 1401 of the outer mesh is 2.227 lGI for vertex number 1501 of the outer mesh is 2.5576 lGI for vertex number 1601 of the outer mesh is 3.2046 lGI for vertex number 1701 of the outer mesh is 1.9655 lGI for vertex number 1801 of the outer mesh is 2.4366 lGI for vertex number 1901 of the outer mesh is 2.5188 lGI for vertex number 2001 of the outer mesh is 2.4734 lGI for vertex number 2101 of the outer mesh is 2.6813 lGI for vertex number 2201 of the outer mesh is 2.1943 lGI for vertex number 2301 of the outer mesh is 2.1068 lGI for vertex number 2401 of the outer mesh is 2.2553 lGI for vertex number 2501 of the outer mesh is 2.782 lGI for vertex number 2601 of the outer mesh is 2.4478 lGI for vertex number 2701 of the outer mesh is 2.7455 lGI for vertex number 2801 of the outer mesh is 2.3226 lGI for vertex number 2901 of the outer mesh is 2.0228 lGI for vertex number 3001 of the outer mesh is 2.4951 lGI for vertex number 3101 of the outer mesh is 1.7943 lGI for vertex number 3201 of the outer mesh is 2.693 lGI for vertex number 3301 of the outer mesh is 2.5582 lGI for vertex number 3401 of the outer mesh is 2.6312 lGI for vertex number 3501 of the outer mesh is 2.6972 lGI for vertex number 3601 of the outer mesh is 1.9022 lGI for vertex number 3701 of the outer mesh is 2.6945 lGI for vertex number 3801 of the outer mesh is 2.8477 lGI for vertex number 3901 of the outer mesh is 2.7653 lGI for vertex number 4001 of the outer mesh is 3.0691 lGI for vertex number 4101 of the outer mesh is 2.0131 lGI for vertex number 4201 of the outer mesh is 2.0263 lGI for vertex number 4301 of the outer mesh is 2.4349 lGI for vertex number 4401 of the outer mesh is 3.1375 lGI for vertex number 4501 of the outer mesh is 2.421 lGI for vertex number 4601 of the outer mesh is 2.7597 lGI for vertex number 4701 of the outer mesh is 2.0379 lGI for vertex number 4801 of the outer mesh is 2.5855 lGI for vertex number 4901 of the outer mesh is 2.4496 lGI for vertex number 5001 of the outer mesh is 2.8138 lGI for vertex number 5101 of the outer mesh is 2.3036 lGI for vertex number 5201 of the outer mesh is 2.0424 lGI for vertex number 5301 of the outer mesh is 2.1025 lGI for vertex number 5401 of the outer mesh is 2.563 lGI for vertex number 5501 of the outer mesh is 2.4199 lGI for vertex number 5601 of the outer mesh is 2.1603 lGI for vertex number 5701 of the outer mesh is 3.0794 lGI for vertex number 5801 of the outer mesh is 2.7507 lGI for vertex number 5901 of the outer mesh is 2.0107 lGI for vertex number 6001 of the outer mesh is 2.1242 lGI for vertex number 6101 of the outer mesh is 2.0412 lGI for vertex number 6201 of the outer mesh is 1.751 lGI for vertex number 6301 of the outer mesh is 2.8551 lGI for vertex number 6401 of the outer mesh is 2.3638 lGI for vertex number 6501 of the outer mesh is 1.7831 lGI for vertex number 6601 of the outer mesh is 2.9547 lGI for vertex number 6701 of the outer mesh is 2.7481 lGI for vertex number 6801 of the outer mesh is 2.5292 lGI for vertex number 6901 of the outer mesh is 1.9573 lGI for vertex number 7001 of the outer mesh is 2.1594 lGI for vertex number 7101 of the outer mesh is 2.9757 lGI for vertex number 7201 of the outer mesh is 2.5237 lGI for vertex number 7301 of the outer mesh is 2.4054 lGI for vertex number 7401 of the outer mesh is 2.9893 lGI for vertex number 7501 of the outer mesh is 3.0424 lGI for vertex number 7601 of the outer mesh is 2.585 lGI for vertex number 7701 of the outer mesh is 1.8403 lGI for vertex number 7801 of the outer mesh is 2.6219 lGI for vertex number 7901 of the outer mesh is 3.2303 lGI for vertex number 8001 of the outer mesh is 2.8352 lGI for vertex number 8101 of the outer mesh is 1.8463 lGI for vertex number 8201 of the outer mesh is 2.3835 lGI for vertex number 8301 of the outer mesh is 2.1916 lGI for vertex number 8401 of the outer mesh is 2.6702 lGI for vertex number 8501 of the outer mesh is 2.1883 lGI for vertex number 8601 of the outer mesh is 1.8348 lGI for vertex number 8701 of the outer mesh is 2.8785 lGI for vertex number 8801 of the outer mesh is 2.7115 lGI for vertex number 8901 of the outer mesh is 2.7983 lGI for vertex number 9001 of the outer mesh is 1.9854 lGI for vertex number 9101 of the outer mesh is 3.1615 lGI for vertex number 9201 of the outer mesh is 2.5737 lGI for vertex number 9301 of the outer mesh is 2.5148 lGI for vertex number 9401 of the outer mesh is 2.0397 lGI for vertex number 9501 of the outer mesh is 2.847 lGI for vertex number 9601 of the outer mesh is 2.5897 lGI for vertex number 9701 of the outer mesh is 2.7386 lGI for vertex number 9801 of the outer mesh is 1.9743 lGI for vertex number 9901 of the outer mesh is 2.9844 lGI for vertex number 10001 of the outer mesh is 2.9164 ratio saved at 10001 lGI for vertex number 10101 of the outer mesh is 2.7841 lGI for vertex number 10201 of the outer mesh is 1.9612 lGI for vertex number 10301 of the outer mesh is 2.448 lGI for vertex number 10401 of the outer mesh is 2.827 lGI for vertex number 10501 of the outer mesh is 2.4386 lGI for vertex number 10601 of the outer mesh is 2.3012 lGI for vertex number 10701 of the outer mesh is 2.3098 lGI for vertex number 10801 of the outer mesh is 2.8596 lGI for vertex number 10901 of the outer mesh is 3.0239 lGI for vertex number 11001 of the outer mesh is 2.7489 lGI for vertex number 11101 of the outer mesh is 1.8374 lGI for vertex number 11201 of the outer mesh is 2.1896 lGI for vertex number 11301 of the outer mesh is 2.3129 lGI for vertex number 11401 of the outer mesh is 2.9461 lGI for vertex number 11501 of the outer mesh is 3.0213 lGI for vertex number 11601 of the outer mesh is 1.7827 lGI for vertex number 11701 of the outer mesh is 2.4367 lGI for vertex number 11801 of the outer mesh is 2.83 lGI for vertex number 11901 of the outer mesh is 2.9485 lGI for vertex number 12001 of the outer mesh is 2.3977 lGI for vertex number 12101 of the outer mesh is 1.7827 lGI for vertex number 12201 of the outer mesh is 3.1701 lGI for vertex number 12301 of the outer mesh is 3.0065 lGI for vertex number 12401 of the outer mesh is 2.8065 lGI for vertex number 12501 of the outer mesh is 1.8465 lGI for vertex number 12601 of the outer mesh is 2.6678 lGI for vertex number 12701 of the outer mesh is 2.8611 lGI for vertex number 12801 of the outer mesh is 2.4873 lGI for vertex number 12901 of the outer mesh is 2.1564 lGI for vertex number 13001 of the outer mesh is 2.2558 lGI for vertex number 13101 of the outer mesh is 3.0757 lGI for vertex number 13201 of the outer mesh is 3.142 lGI for vertex number 13301 of the outer mesh is 2.2882 lGI for vertex number 13401 of the outer mesh is 1.996 lGI for vertex number 13501 of the outer mesh is 3.1344 lGI for vertex number 13601 of the outer mesh is 3.1148 lGI for vertex number 13701 of the outer mesh is 2.4951 lGI for vertex number 13801 of the outer mesh is 2.1012 lGI for vertex number 13901 of the outer mesh is 2.1217 lGI for vertex number 14001 of the outer mesh is 3.0713 lGI for vertex number 14101 of the outer mesh is 3.0918 lGI for vertex number 14201 of the outer mesh is 2.7768 lGI for vertex number 14301 of the outer mesh is 2.6874 lGI for vertex number 14401 of the outer mesh is 3.2 lGI for vertex number 14501 of the outer mesh is 2.9269 lGI for vertex number 14601 of the outer mesh is 2.0735 lGI for vertex number 14701 of the outer mesh is 2.1708 lGI for vertex number 14801 of the outer mesh is 2.8761 lGI for vertex number 14901 of the outer mesh is 3.1168 lGI for vertex number 15001 of the outer mesh is 2.287 lGI for vertex number 15101 of the outer mesh is 2.0033 lGI for vertex number 15201 of the outer mesh is 2.7473 lGI for vertex number 15301 of the outer mesh is 3.0598 lGI for vertex number 15401 of the outer mesh is 2.9952 lGI for vertex number 15501 of the outer mesh is 2.2748 lGI for vertex number 15601 of the outer mesh is 2.5163 lGI for vertex number 15701 of the outer mesh is 2.7835 lGI for vertex number 15801 of the outer mesh is 2.3376 lGI for vertex number 15901 of the outer mesh is 2.8021 lGI for vertex number 16001 of the outer mesh is 2.0666 lGI for vertex number 16101 of the outer mesh is 2.146 lGI for vertex number 16201 of the outer mesh is 2.3399 lGI for vertex number 16301 of the outer mesh is 3.1252 lGI for vertex number 16401 of the outer mesh is 2.8083 lGI for vertex number 16501 of the outer mesh is 2.6061 lGI for vertex number 16601 of the outer mesh is 2.2074 lGI for vertex number 16701 of the outer mesh is 3.223 lGI for vertex number 16801 of the outer mesh is 2.172 lGI for vertex number 16901 of the outer mesh is 2.8375 lGI for vertex number 17001 of the outer mesh is 2.0354 lGI for vertex number 17101 of the outer mesh is 2.554 lGI for vertex number 17201 of the outer mesh is 2.8883 lGI for vertex number 17301 of the outer mesh is 2.9767 lGI for vertex number 17401 of the outer mesh is 2.2459 lGI for vertex number 17501 of the outer mesh is 2.2887 lGI for vertex number 17601 of the outer mesh is 2.9822 lGI for vertex number 17701 of the outer mesh is 3.1945 lGI for vertex number 17801 of the outer mesh is 2.9484 lGI for vertex number 17901 of the outer mesh is 2.7825 lGI for vertex number 18001 of the outer mesh is 1.9275 lGI for vertex number 18101 of the outer mesh is 2.3414 lGI for vertex number 18201 of the outer mesh is 3.4897 lGI for vertex number 18301 of the outer mesh is 2.2481 lGI for vertex number 18401 of the outer mesh is 2.2093 lGI for vertex number 18501 of the outer mesh is 2.005 lGI for vertex number 18601 of the outer mesh is 2.5302 lGI for vertex number 18701 of the outer mesh is 3.2474 lGI for vertex number 18801 of the outer mesh is 2.3971 lGI for vertex number 18901 of the outer mesh is 1.813 lGI for vertex number 19001 of the outer mesh is 2.8473 lGI for vertex number 19101 of the outer mesh is 3.2986 lGI for vertex number 19201 of the outer mesh is 2.9095 lGI for vertex number 19301 of the outer mesh is 2.722 lGI for vertex number 19401 of the outer mesh is 2.3106 lGI for vertex number 19501 of the outer mesh is 3.2144 lGI for vertex number 19601 of the outer mesh is 2.4729 lGI for vertex number 19701 of the outer mesh is 2.6195 lGI for vertex number 19801 of the outer mesh is 2.4347 lGI for vertex number 19901 of the outer mesh is 3.4997 lGI for vertex number 20001 of the outer mesh is 3.2954 ratio saved at 20001 lGI for vertex number 20101 of the outer mesh is 1.9 lGI for vertex number 20201 of the outer mesh is 2.4313 lGI for vertex number 20301 of the outer mesh is 3.9404 lGI for vertex number 20401 of the outer mesh is 2.8812 lGI for vertex number 20501 of the outer mesh is 2.3119 lGI for vertex number 20601 of the outer mesh is 2.3103 lGI for vertex number 20701 of the outer mesh is 2.5106 lGI for vertex number 20801 of the outer mesh is 2.8733 lGI for vertex number 20901 of the outer mesh is 3.1548 lGI for vertex number 21001 of the outer mesh is 3.048 lGI for vertex number 21101 of the outer mesh is 1.7025 lGI for vertex number 21201 of the outer mesh is 3.4182 lGI for vertex number 21301 of the outer mesh is 2.8905 lGI for vertex number 21401 of the outer mesh is 2.3383 lGI for vertex number 21501 of the outer mesh is 2.5466 lGI for vertex number 21601 of the outer mesh is 3.243 lGI for vertex number 21701 of the outer mesh is 2.5751 lGI for vertex number 21801 of the outer mesh is 2.2244 lGI for vertex number 21901 of the outer mesh is 2.5669 lGI for vertex number 22001 of the outer mesh is 2.0731 lGI for vertex number 22101 of the outer mesh is 2.2357 lGI for vertex number 22201 of the outer mesh is 3.0943 lGI for vertex number 22301 of the outer mesh is 1.7284 lGI for vertex number 22401 of the outer mesh is 1.8804 lGI for vertex number 22501 of the outer mesh is 3.0878 lGI for vertex number 22601 of the outer mesh is 3.1273 lGI for vertex number 22701 of the outer mesh is 2.3035 lGI for vertex number 22801 of the outer mesh is 2.2476 lGI for vertex number 22901 of the outer mesh is 3.1346 lGI for vertex number 23001 of the outer mesh is 3.1504 lGI for vertex number 23101 of the outer mesh is 2.0826 lGI for vertex number 23201 of the outer mesh is 2.0922 lGI for vertex number 23301 of the outer mesh is 3.6611 lGI for vertex number 23401 of the outer mesh is 3.2041 lGI for vertex number 23501 of the outer mesh is 2.6825 lGI for vertex number 23601 of the outer mesh is 2.6445 lGI for vertex number 23701 of the outer mesh is 2.1951 lGI for vertex number 23801 of the outer mesh is 2.86 lGI for vertex number 23901 of the outer mesh is 3.2728 lGI for vertex number 24001 of the outer mesh is 2.6388 lGI for vertex number 24101 of the outer mesh is 2.0338 lGI for vertex number 24201 of the outer mesh is 3.8951 lGI for vertex number 24301 of the outer mesh is 3.0321 lGI for vertex number 24401 of the outer mesh is 2.3553 lGI for vertex number 24501 of the outer mesh is 1.7171 lGI for vertex number 24601 of the outer mesh is 1.7938 lGI for vertex number 24701 of the outer mesh is 2.9606 lGI for vertex number 24801 of the outer mesh is 2.1706 lGI for vertex number 24901 of the outer mesh is 1.5739 lGI for vertex number 25001 of the outer mesh is 2.0716 lGI for vertex number 25101 of the outer mesh is 2.85 lGI for vertex number 25201 of the outer mesh is 2.4924 lGI for vertex number 25301 of the outer mesh is 1.5838 lGI for vertex number 25401 of the outer mesh is 1.8894 lGI for vertex number 25501 of the outer mesh is 2.8489 lGI for vertex number 25601 of the outer mesh is 2.3864 lGI for vertex number 25701 of the outer mesh is 2.1538 lGI for vertex number 25801 of the outer mesh is 1.4559 lGI for vertex number 25901 of the outer mesh is 2.7628 lGI for vertex number 26001 of the outer mesh is 2.8005 lGI for vertex number 26101 of the outer mesh is 2.1538 lGI for vertex number 26201 of the outer mesh is 2.1331 lGI for vertex number 26301 of the outer mesh is 2.8045 lGI for vertex number 26401 of the outer mesh is 2.9278 lGI for vertex number 26501 of the outer mesh is 2.3494 lGI for vertex number 26601 of the outer mesh is 2.0574 lGI for vertex number 26701 of the outer mesh is 3.9931 lGI for vertex number 26801 of the outer mesh is 2.8726 lGI for vertex number 26901 of the outer mesh is 1.8621 lGI for vertex number 27001 of the outer mesh is 2.1868 lGI for vertex number 27101 of the outer mesh is 3.7642 lGI for vertex number 27201 of the outer mesh is 2.1444 lGI for vertex number 27301 of the outer mesh is 2.7778 lGI for vertex number 27401 of the outer mesh is 1.3866 lGI for vertex number 27501 of the outer mesh is 3.6819 lGI for vertex number 27601 of the outer mesh is 2.7945 lGI for vertex number 27701 of the outer mesh is 2.4023 lGI for vertex number 27801 of the outer mesh is 1.808 lGI for vertex number 27901 of the outer mesh is 4.0304 lGI for vertex number 28001 of the outer mesh is 2.4181 lGI for vertex number 28101 of the outer mesh is 2.0368 lGI for vertex number 28201 of the outer mesh is 1.8913 lGI for vertex number 28301 of the outer mesh is 3.3969 lGI for vertex number 28401 of the outer mesh is 3.019 lGI for vertex number 28501 of the outer mesh is 2.4131 lGI for vertex number 28601 of the outer mesh is 1.6256 lGI for vertex number 28701 of the outer mesh is 3.4299 lGI for vertex number 28801 of the outer mesh is 2.2699 lGI for vertex number 28901 of the outer mesh is 2.3305 lGI for vertex number 29001 of the outer mesh is 2.1206 lGI for vertex number 29101 of the outer mesh is 1.8007 lGI for vertex number 29201 of the outer mesh is 2.5204 lGI for vertex number 29301 of the outer mesh is 2.6026 lGI for vertex number 29401 of the outer mesh is 2.7886 lGI for vertex number 29501 of the outer mesh is 2.1756 lGI for vertex number 29601 of the outer mesh is 2.6216 lGI for vertex number 29701 of the outer mesh is 2.1618 lGI for vertex number 29801 of the outer mesh is 3.0592 lGI for vertex number 29901 of the outer mesh is 2.4856 lGI for vertex number 30001 of the outer mesh is 1.9042 ratio saved at 30001 lGI for vertex number 30101 of the outer mesh is 4.8506 lGI for vertex number 30201 of the outer mesh is 3.0839 lGI for vertex number 30301 of the outer mesh is 3.0195 lGI for vertex number 30401 of the outer mesh is 2.0479 lGI for vertex number 30501 of the outer mesh is 1.7426 lGI for vertex number 30601 of the outer mesh is 2.6715 lGI for vertex number 30701 of the outer mesh is 2.2529 lGI for vertex number 30801 of the outer mesh is 3.0174 lGI for vertex number 30901 of the outer mesh is 1.5865 lGI for vertex number 31001 of the outer mesh is 2.7305 lGI for vertex number 31101 of the outer mesh is 2.5188 lGI for vertex number 31201 of the outer mesh is 2.7529 lGI for vertex number 31301 of the outer mesh is 2.8964 lGI for vertex number 31401 of the outer mesh is 1.7765 lGI for vertex number 31501 of the outer mesh is 1.5053 lGI for vertex number 31601 of the outer mesh is 2.7675 lGI for vertex number 31701 of the outer mesh is 2.8473 lGI for vertex number 31801 of the outer mesh is 2.9191 lGI for vertex number 31901 of the outer mesh is 1.8092 lGI for vertex number 32001 of the outer mesh is 4.8284 lGI for vertex number 32101 of the outer mesh is 2.7437 lGI for vertex number 32201 of the outer mesh is 2.9173 lGI for vertex number 32301 of the outer mesh is 1.9708 lGI for vertex number 32401 of the outer mesh is 2.8279 lGI for vertex number 32501 of the outer mesh is 4.7388 lGI for vertex number 32601 of the outer mesh is 1.9177 lGI for vertex number 32701 of the outer mesh is 2.2924 lGI for vertex number 32801 of the outer mesh is 1.8113 lGI for vertex number 32901 of the outer mesh is 3.4175 lGI for vertex number 33001 of the outer mesh is 2.7451 lGI for vertex number 33101 of the outer mesh is 1.9109 lGI for vertex number 33201 of the outer mesh is 1.8701 lGI for vertex number 33301 of the outer mesh is 1.2175 lGI for vertex number 33401 of the outer mesh is 3.0766 lGI for vertex number 33501 of the outer mesh is 2.0207 lGI for vertex number 33601 of the outer mesh is 2.8226 lGI for vertex number 33701 of the outer mesh is 2.4853 lGI for vertex number 33801 of the outer mesh is 3.203 lGI for vertex number 33901 of the outer mesh is 2.0602 lGI for vertex number 34001 of the outer mesh is 3.0902 lGI for vertex number 34101 of the outer mesh is 2.0151 lGI for vertex number 34201 of the outer mesh is 4.7105 lGI for vertex number 34301 of the outer mesh is 2.1847 lGI for vertex number 34401 of the outer mesh is 2.104 lGI for vertex number 34501 of the outer mesh is 1.8885 lGI for vertex number 34601 of the outer mesh is 2.6742 lGI for vertex number 34701 of the outer mesh is 1.9435 lGI for vertex number 34801 of the outer mesh is 1.995 lGI for vertex number 34901 of the outer mesh is 1.8766 lGI for vertex number 35001 of the outer mesh is 1.6988 lGI for vertex number 35101 of the outer mesh is 2.9344 lGI for vertex number 35201 of the outer mesh is 2.7253 lGI for vertex number 35301 of the outer mesh is 1.8393 lGI for vertex number 35401 of the outer mesh is 1.3027 lGI for vertex number 35501 of the outer mesh is 2.543 lGI for vertex number 35601 of the outer mesh is 2.0607 lGI for vertex number 35701 of the outer mesh is 1.7473 lGI for vertex number 35801 of the outer mesh is 2.6672 lGI for vertex number 35901 of the outer mesh is 5.5403 lGI for vertex number 36001 of the outer mesh is 2.8223 lGI for vertex number 36101 of the outer mesh is 1.9665 lGI for vertex number 36201 of the outer mesh is 1.7858 lGI for vertex number 36301 of the outer mesh is 4.7733 lGI for vertex number 36401 of the outer mesh is 1.9368 lGI for vertex number 36501 of the outer mesh is 2.0174 lGI for vertex number 36601 of the outer mesh is 2.7033 lGI for vertex number 36701 of the outer mesh is 1.3027 lGI for vertex number 36801 of the outer mesh is 2.8863 lGI for vertex number 36901 of the outer mesh is 2.9306 lGI for vertex number 37001 of the outer mesh is 2.0304 lGI for vertex number 37101 of the outer mesh is 1.8337 lGI for vertex number 37201 of the outer mesh is 4.9264 lGI for vertex number 37301 of the outer mesh is 2.0717 lGI for vertex number 37401 of the outer mesh is 2.0754 lGI for vertex number 37501 of the outer mesh is 1.9478 lGI for vertex number 37601 of the outer mesh is 1.8387 lGI for vertex number 37701 of the outer mesh is 5.266 lGI for vertex number 37801 of the outer mesh is 1.9742 lGI for vertex number 37901 of the outer mesh is 2.0689 lGI for vertex number 38001 of the outer mesh is 1.7263 lGI for vertex number 38101 of the outer mesh is 4.2608 lGI for vertex number 38201 of the outer mesh is 2.9547 lGI for vertex number 38301 of the outer mesh is 2.0373 lGI for vertex number 38401 of the outer mesh is 1.9 lGI for vertex number 38501 of the outer mesh is 2.1233 lGI for vertex number 38601 of the outer mesh is 4.3179 lGI for vertex number 38701 of the outer mesh is 3.3289 lGI for vertex number 38801 of the outer mesh is 1.9918 lGI for vertex number 38901 of the outer mesh is 1.8404 lGI for vertex number 39001 of the outer mesh is 4.9537 lGI for vertex number 39101 of the outer mesh is 2.9947 lGI for vertex number 39201 of the outer mesh is 2.8829 lGI for vertex number 39301 of the outer mesh is 2.8807 lGI for vertex number 39401 of the outer mesh is 1.718 lGI for vertex number 39501 of the outer mesh is 4.9532 lGI for vertex number 39601 of the outer mesh is 2.9047 lGI for vertex number 39701 of the outer mesh is 3.0378 lGI for vertex number 39801 of the outer mesh is 2.0652 lGI for vertex number 39901 of the outer mesh is 1.8286 lGI for vertex number 40001 of the outer mesh is 1.6903 ratio saved at 40001 lGI for vertex number 40101 of the outer mesh is 2.2482 lGI for vertex number 40201 of the outer mesh is 3.3373 lGI for vertex number 40301 of the outer mesh is 2.1579 lGI for vertex number 40401 of the outer mesh is 1.9529 lGI for vertex number 40501 of the outer mesh is 4.8447 lGI for vertex number 40601 of the outer mesh is 3.0418 lGI for vertex number 40701 of the outer mesh is 1.7699 lGI for vertex number 40801 of the outer mesh is 1.8434 lGI for vertex number 40901 of the outer mesh is 4.7918 lGI for vertex number 41001 of the outer mesh is 2.1034 lGI for vertex number 41101 of the outer mesh is 1.7569 lGI for vertex number 41201 of the outer mesh is 2.7776 lGI for vertex number 41301 of the outer mesh is 2.0167 lGI for vertex number 41401 of the outer mesh is 2.8415 lGI for vertex number 41501 of the outer mesh is 1.8872 lGI for vertex number 41601 of the outer mesh is 2.4069 lGI for vertex number 41701 of the outer mesh is 1.7572 lGI for vertex number 41801 of the outer mesh is 5.0249 lGI for vertex number 41901 of the outer mesh is 3.3792 lGI for vertex number 42001 of the outer mesh is 2.6578 lGI for vertex number 42101 of the outer mesh is 1.7417 lGI for vertex number 42201 of the outer mesh is 5.1051 lGI for vertex number 42301 of the outer mesh is 2.0395 lGI for vertex number 42401 of the outer mesh is 1.6363 lGI for vertex number 42501 of the outer mesh is 1.7904 lGI for vertex number 42601 of the outer mesh is 5.2446 lGI for vertex number 42701 of the outer mesh is 2.0488 lGI for vertex number 42801 of the outer mesh is 1.9958 lGI for vertex number 42901 of the outer mesh is 2.3251 lGI for vertex number 43001 of the outer mesh is 2.0545 lGI for vertex number 43101 of the outer mesh is 4.5581 lGI for vertex number 43201 of the outer mesh is 1.8331 lGI for vertex number 43301 of the outer mesh is 2.3746 lGI for vertex number 43401 of the outer mesh is 1.8432 lGI for vertex number 43501 of the outer mesh is 4.9663 lGI for vertex number 43601 of the outer mesh is 4.9683 lGI for vertex number 43701 of the outer mesh is 1.8477 lGI for vertex number 43801 of the outer mesh is 2.5079 lGI for vertex number 43901 of the outer mesh is 1.8082 lGI for vertex number 44001 of the outer mesh is 4.9447 lGI for vertex number 44101 of the outer mesh is 1.8824 lGI for vertex number 44201 of the outer mesh is 1.9611 lGI for vertex number 44301 of the outer mesh is 1.8159 lGI for vertex number 44401 of the outer mesh is 1.5022 lGI for vertex number 44501 of the outer mesh is 5.1114 lGI for vertex number 44601 of the outer mesh is 1.8485 lGI for vertex number 44701 of the outer mesh is 1.9935 lGI for vertex number 44801 of the outer mesh is 1.7717 lGI for vertex number 44901 of the outer mesh is 1.7972 lGI for vertex number 45001 of the outer mesh is 2.6863 lGI for vertex number 45101 of the outer mesh is 2.6133 lGI for vertex number 45201 of the outer mesh is 2.0606 lGI for vertex number 45301 of the outer mesh is 2.1439 lGI for vertex number 45401 of the outer mesh is 4.9858 lGI for vertex number 45501 of the outer mesh is 2.7733 lGI for vertex number 45601 of the outer mesh is 2.5852 lGI for vertex number 45701 of the outer mesh is 2.0964 lGI for vertex number 45801 of the outer mesh is 2.1795 lGI for vertex number 45901 of the outer mesh is 4.3115 lGI for vertex number 46001 of the outer mesh is 2.9956 lGI for vertex number 46101 of the outer mesh is 2.1631 lGI for vertex number 46201 of the outer mesh is 2.2853 lGI for vertex number 46301 of the outer mesh is 2.1069 lGI for vertex number 46401 of the outer mesh is 4.9947 lGI for vertex number 46501 of the outer mesh is 1.6978 lGI for vertex number 46601 of the outer mesh is 2.0345 lGI for vertex number 46701 of the outer mesh is 1.8787 lGI for vertex number 46801 of the outer mesh is 5.1075 lGI for vertex number 46901 of the outer mesh is 2.5433 lGI for vertex number 47001 of the outer mesh is 1.897 lGI for vertex number 47101 of the outer mesh is 1.7173 lGI for vertex number 47201 of the outer mesh is 4.6272 lGI for vertex number 47301 of the outer mesh is 2.9003 lGI for vertex number 47401 of the outer mesh is 1.7621 lGI for vertex number 47501 of the outer mesh is 1.8255 lGI for vertex number 47601 of the outer mesh is 5.0653 lGI for vertex number 47701 of the outer mesh is 2.5184 lGI for vertex number 47801 of the outer mesh is 2.0244 lGI for vertex number 47901 of the outer mesh is 1.7067 lGI for vertex number 48001 of the outer mesh is 5.0761 lGI for vertex number 48101 of the outer mesh is 2.6326 lGI for vertex number 48201 of the outer mesh is 2.2193 lGI for vertex number 48301 of the outer mesh is 1.932 lGI for vertex number 48401 of the outer mesh is 1.8434 lGI for vertex number 48501 of the outer mesh is 4.2022 lGI for vertex number 48601 of the outer mesh is 2.4209 lGI for vertex number 48701 of the outer mesh is 2.0096 lGI for vertex number 48801 of the outer mesh is 2.1704 lGI for vertex number 48901 of the outer mesh is 4.0547 lGI for vertex number 49001 of the outer mesh is 2.7812 lGI for vertex number 49101 of the outer mesh is 2.0829 lGI for vertex number 49201 of the outer mesh is 1.9139 lGI for vertex number 49301 of the outer mesh is 4.7693 lGI for vertex number 49401 of the outer mesh is 3.1301 lGI for vertex number 49501 of the outer mesh is 2.0654 lGI for vertex number 49601 of the outer mesh is 2.0022 lGI for vertex number 49701 of the outer mesh is 2.0711 lGI for vertex number 49801 of the outer mesh is 4.1075 lGI for vertex number 49901 of the outer mesh is 2.4865 lGI for vertex number 50001 of the outer mesh is 1.8641 ratio saved at 50001 lGI for vertex number 50101 of the outer mesh is 2.0173 lGI for vertex number 50201 of the outer mesh is 3.1293 lGI for vertex number 50301 of the outer mesh is 2.7136 lGI for vertex number 50401 of the outer mesh is 2.0863 lGI for vertex number 50501 of the outer mesh is 2.0809 lGI for vertex number 50601 of the outer mesh is 3.2999 lGI for vertex number 50701 of the outer mesh is 2.6763 lGI for vertex number 50801 of the outer mesh is 1.8882 lGI for vertex number 50901 of the outer mesh is 1.9773 lGI for vertex number 51001 of the outer mesh is 3.328 lGI for vertex number 51101 of the outer mesh is 2.4404 lGI for vertex number 51201 of the outer mesh is 1.3269 lGI for vertex number 51301 of the outer mesh is 2.0115 lGI for vertex number 51401 of the outer mesh is 3.0001 lGI for vertex number 51501 of the outer mesh is 3.1887 lGI for vertex number 51601 of the outer mesh is 2.0604 lGI for vertex number 51701 of the outer mesh is 2.0824 lGI for vertex number 51801 of the outer mesh is 2.0172 lGI for vertex number 51901 of the outer mesh is 2.8674 lGI for vertex number 52001 of the outer mesh is 2.1925 lGI for vertex number 52101 of the outer mesh is 2.1996 lGI for vertex number 52201 of the outer mesh is 1.883 lGI for vertex number 52301 of the outer mesh is 3.2816 lGI for vertex number 52401 of the outer mesh is 2.3876 lGI for vertex number 52501 of the outer mesh is 2.0846 lGI for vertex number 52601 of the outer mesh is 2.1605 lGI for vertex number 52701 of the outer mesh is 1.9141 lGI for vertex number 52801 of the outer mesh is 2.581 lGI for vertex number 52901 of the outer mesh is 2.1477 lGI for vertex number 53001 of the outer mesh is 1.8688 lGI for vertex number 53101 of the outer mesh is 2.1123 lGI for vertex number 53201 of the outer mesh is 2.5676 lGI for vertex number 53301 of the outer mesh is 2.3736 lGI for vertex number 53401 of the outer mesh is 2.143 lGI for vertex number 53501 of the outer mesh is 2.201 lGI for vertex number 53601 of the outer mesh is 2.1817 lGI for vertex number 53701 of the outer mesh is 2.369 lGI for vertex number 53801 of the outer mesh is 2.4366 lGI for vertex number 53901 of the outer mesh is 2.2158 lGI for vertex number 54001 of the outer mesh is 2.0127 lGI for vertex number 54101 of the outer mesh is 3.1019 lGI for vertex number 54201 of the outer mesh is 2.5107 lGI for vertex number 54301 of the outer mesh is 2.1925 lGI for vertex number 54401 of the outer mesh is 1.9807 lGI for vertex number 54501 of the outer mesh is 1.8159 lGI for vertex number 54601 of the outer mesh is 2.5642 lGI for vertex number 54701 of the outer mesh is 1.5985 lGI for vertex number 54801 of the outer mesh is 1.8495 lGI for vertex number 54901 of the outer mesh is 2.6242 lGI for vertex number 55001 of the outer mesh is 2.1159 lGI for vertex number 55101 of the outer mesh is 2.0343 lGI for vertex number 55201 of the outer mesh is 2.1068 lGI for vertex number 55301 of the outer mesh is 2.362 lGI for vertex number 55401 of the outer mesh is 1.9091 lGI for vertex number 55501 of the outer mesh is 2.6332 lGI for vertex number 55601 of the outer mesh is 2.3911 lGI for vertex number 55701 of the outer mesh is 1.8064 lGI for vertex number 55801 of the outer mesh is 1.7204 lGI for vertex number 55901 of the outer mesh is 2.5808 lGI for vertex number 56001 of the outer mesh is 1.9755 lGI for vertex number 56101 of the outer mesh is 1.8827 lGI for vertex number 56201 of the outer mesh is 2.5516 lGI for vertex number 56301 of the outer mesh is 1.6994 lGI for vertex number 56401 of the outer mesh is 1.9891 lGI for vertex number 56501 of the outer mesh is 2.6279 lGI for vertex number 56601 of the outer mesh is 1.9355 lGI for vertex number 56701 of the outer mesh is 2.055 lGI for vertex number 56801 of the outer mesh is 2.4269 lGI for vertex number 56901 of the outer mesh is 2.3221 lGI for vertex number 57001 of the outer mesh is 1.8083 lGI for vertex number 57101 of the outer mesh is 2.5364 lGI for vertex number 57201 of the outer mesh is 2.2157 lGI for vertex number 57301 of the outer mesh is 2.0034 lGI for vertex number 57401 of the outer mesh is 2.3852 lGI for vertex number 57501 of the outer mesh is 2.2198 lGI for vertex number 57601 of the outer mesh is 2.0007 lGI for vertex number 57701 of the outer mesh is 1.8084 lGI for vertex number 57801 of the outer mesh is 2.7311 lGI for vertex number 57901 of the outer mesh is 2.0879 lGI for vertex number 58001 of the outer mesh is 2.0223 lGI for vertex number 58101 of the outer mesh is 2.4331 lGI for vertex number 58201 of the outer mesh is 2.1317 lGI for vertex number 58301 of the outer mesh is 1.8422 lGI for vertex number 58401 of the outer mesh is 2.8296 lGI for vertex number 58501 of the outer mesh is 1.9098 lGI for vertex number 58601 of the outer mesh is 1.9892 lGI for vertex number 58701 of the outer mesh is 2.4354 lGI for vertex number 58801 of the outer mesh is 2.1027 lGI for vertex number 58901 of the outer mesh is 1.9167 lGI for vertex number 59001 of the outer mesh is 2.6366 lGI for vertex number 59101 of the outer mesh is 2.0998 lGI for vertex number 59201 of the outer mesh is 1.7431 lGI for vertex number 59301 of the outer mesh is 2.1673 lGI for vertex number 59401 of the outer mesh is 1.8299 lGI for vertex number 59501 of the outer mesh is 2.0222 lGI for vertex number 59601 of the outer mesh is 2.0675 lGI for vertex number 59701 of the outer mesh is 1.9356 lGI for vertex number 59801 of the outer mesh is 2.2513 lGI for vertex number 59901 of the outer mesh is 2.3388 lGI for vertex number 60001 of the outer mesh is 1.7804 ratio saved at 60001 lGI for vertex number 60101 of the outer mesh is 2.3846 lGI for vertex number 60201 of the outer mesh is 1.9709 lGI for vertex number 60301 of the outer mesh is 2.3612 lGI for vertex number 60401 of the outer mesh is 2.2136 lGI for vertex number 60501 of the outer mesh is 1.8623 lGI for vertex number 60601 of the outer mesh is 2.2239 lGI for vertex number 60701 of the outer mesh is 2.3033 lGI for vertex number 60801 of the outer mesh is 1.657 lGI for vertex number 60901 of the outer mesh is 2.1997 lGI for vertex number 61001 of the outer mesh is 2.4073 lGI for vertex number 61101 of the outer mesh is 1.5903 lGI for vertex number 61201 of the outer mesh is 2.1015 lGI for vertex number 61301 of the outer mesh is 1.8682 lGI for vertex number 61401 of the outer mesh is 2.2435 lGI for vertex number 61501 of the outer mesh is 2.0558 lGI for vertex number 61601 of the outer mesh is 2.0887 lGI for vertex number 61701 of the outer mesh is 2.1083 lGI for vertex number 61801 of the outer mesh is 1.7837 lGI for vertex number 61901 of the outer mesh is 2.1304 lGI for vertex number 62001 of the outer mesh is 1.9634 lGI for vertex number 62101 of the outer mesh is 1.8715 lGI for vertex number 62201 of the outer mesh is 2.2511 lGI for vertex number 62301 of the outer mesh is 1.8197 lGI for vertex number 62401 of the outer mesh is 1.912 lGI for vertex number 62501 of the outer mesh is 1.6889 lGI for vertex number 62601 of the outer mesh is 1.9291 lGI for vertex number 62701 of the outer mesh is 1.6304 lGI for vertex number 62801 of the outer mesh is 1.8641 lGI for vertex number 62901 of the outer mesh is 1.8488 .. Almost finished .. now back-propagating values on the folded mesh .. average_lGI_over_the_hemisphere = 2.7357 DONE. deltaT = 1.9015e+03 ================= mris_convert -c /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial/rh.pial_lgi.asc rh.pial rh.pial_lgi ================= ================= rm -Rf /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-rh.pial ================= done. Start: Tue Dec 15 03:31:32 EET 2015 End: Tue Dec 15 04:47:29 EET 2015 #------------------------------------------ Started at Tue Dec 15 02:16:56 EET 2015 Ended at Tue Dec 15 04:47:29 EET 2015 #@#%# recon-all-run-time-hours 2.509 recon-all -s T40_OM_Post finished without error at Tue Dec 15 04:47:29 EET 2015 \n\n New invocation of recon-all \n\n Tue Dec 15 09:34:50 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post /Applications/freesurfer/bin/recon-all -sd /Users/marco/Documents/T1s/pipelineT1/subjects -s T40_OM_Post -localGI subjid T40_OM_Post setenv SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Actual FREESURFER_HOME /Applications/freesurfer build-stamp.txt: freesurfer-Darwin-lion-stable-pub-v5.3.0 Darwin MacBook-Pro-di-Marco.local 13.3.0 Darwin Kernel Version 13.3.0: Tue Jun 3 21:27:35 PDT 2014; root:xnu-2422.110.17~1/RELEASE_X86_64 x86_64 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 709 PhysMem: 6005M used (1372M wired), 1637M unused. ######################################## program versions used $Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 nicks Exp $ $Id: mri_motion_correct.fsl,v 1.14 2011/03/02 20:16:39 nicks Exp $ mri_convert -all-info ProgramName: mri_convert ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:52-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 FLIRT version 5.5 $Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks Exp $ mri_convert --version stable5 ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:52-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 Program nu_correct, built from: Package MNI N3, version 1.10, compiled by nicks@aspasia.local (i686-apple-darwin10.2.0) on 2010-02-26 at 14:19:30 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:52-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:52-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_normalize.c,v 1.73.2.1 2012/10/17 19:11:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:52-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_watershed.cpp,v 1.96.2.1 2011/11/08 22:18:44 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:52-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:52-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_segment.c,v 1.40 2011/03/02 00:04:24 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_label2label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:52-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_label2label.c,v 1.40.2.2 2013/04/02 16:26:15 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:53-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_em_register.c,v 1.84.2.3 2013/02/09 00:49:26 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:53-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_normalize.c,v 1.52.2.2 2012/10/17 19:11:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:53-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_register.c,v 1.78.2.3 2013/02/09 00:42:20 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:53-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_label.c,v 1.96.2.1 2012/08/28 22:11:20 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:53-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_pretess.c,v 1.20 2011/03/02 00:04:23 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:53-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_fill.c,v 1.118 2011/03/16 21:23:49 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:53-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_concatenate_lta ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:53-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_concatenate_lta.c,v 1.10 2011/03/16 21:23:48 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:53-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:53-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_smooth.c,v 1.28 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:53-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_inflate.c,v 1.43 2011/03/02 00:04:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:53-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:53-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:53-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:53-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:53-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:53-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_euler_number.c,v 1.8.2.2 2013/01/14 22:40:07 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:53-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:54-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:54-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_volmask.cpp,v 1.25 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:54-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_anatomical_stats.c,v 1.72 2011/03/02 00:04:26 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:54-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mrisp_paint.c,v 1.11 2011/03/02 00:04:35 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:54-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_curvature_stats.c,v 1.64 2011/03/02 00:04:30 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:54-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_calc.c,v 1.37.2.8 2013/01/28 17:05:17 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ ProgramName: mri_robust_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:54-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:54-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:54-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:54-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_or.c,v 1.3 2011/03/02 00:04:13 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:54-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/15-07:34:54-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ####################################### GCADIR /Applications/freesurfer/average GCA RB_all_2008-03-26.gca GCASkull RB_all_withskull_2008-03-26.gca AvgCurvTif average.curvature.filled.buckner40.tif GCSDIR /Applications/freesurfer/average GCS curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ####################################### INFO: current FREESURFER_HOME does not match that of previous processing. Current: /Applications/freesurfer Previous: /cdrom/Marco/freesurfer /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf #-------------------------------------------- #@# Local Gyrification Index lh Tue Dec 15 09:34:55 EET 2015 \n mris_compute_lgi --i lh.pial \n ================= rm -Rf /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial ================= ================= mkdir -p /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial ================= ================= mris_fill -c -r 1 lh.pial /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz ================= reading surface from lh.pial... writing filled volume to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz... conforming output volume setting resolution for intermediate calculations to 1.0000 ================= make_outer_surface('/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz',15,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer'); exit ================= 2015-12-15 09:35:02.210 MATLAB_maci64[34156:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> reading filled volume... closing volume... morphological closing done. writing outer surface... ================= mris_extract_main_component /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-main ================= counting number of connected components... 63138 voxel in cpt #1: X=2 [v=63138,e=189408,f=126272] located at (-22.526979, -18.777306, 3.486268) For the whole surface: X=2 [v=63138,e=189408,f=126272] One single component has been found nothing to do done ================= mris_smooth -nw -n 30 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-main ./lh.pial-outer-smoothed ================= smoothing for 30 iterations smoothing surface tessellation for 30 iterations... smoothing complete - recomputing first and second fundamental forms... ================= mris_euler_number ./lh.pial-outer-smoothed ================= euler # = v-e+f = 2g-2: 63138 - 189408 + 126272 = 2 --> 0 holes F =2V-4: 126272 = 126276-4 (0) 2E=3F: 378816 = 378816 (0) total defect index = 0 ================= mris_convert -n lh.pial-outer-smoothed /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc ================= ================= find_corresponding_center_FSformat('lh.pial','lh.pial-outer-smoothed',100,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial','/tmp/mrc_34139_.m'); exit ================= 2015-12-15 09:35:29.625 MATLAB_maci64[34227:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.02 sec) FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) deltaT = 4.6800 ================= make_roi_paths('lh.pial','lh.pial-outer-smoothed',25,100,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial','/tmp/mrp_34139_.m'); exit ================= 2015-12-15 09:35:34.927 MATLAB_maci64[34279:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> loading datas ... FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.02 sec) FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) preparing outer mesh structure ... face 5000 / 126272 face 10000 / 126272 face 15000 / 126272 face 20000 / 126272 face 25000 / 126272 face 30000 / 126272 face 35000 / 126272 face 40000 / 126272 face 45000 / 126272 face 50000 / 126272 face 55000 / 126272 face 60000 / 126272 face 65000 / 126272 face 70000 / 126272 face 75000 / 126272 face 80000 / 126272 face 85000 / 126272 face 90000 / 126272 face 95000 / 126272 face 100000 / 126272 face 105000 / 126272 face 110000 / 126272 face 115000 / 126272 face 120000 / 126272 face 125000 / 126272 mesh_outer = vertices: [63138x3 double] faces: [126272x3 double] facesOfVertex: [63138x1 struct] preparing pial mesh structure ... ...searching for mesh edges...\n\n New invocation of recon-all \n\n Wed Dec 16 03:15:41 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post /Applications/freesurfer/bin/recon-all -sd /Users/marco/Documents/T1s/pipelineT1/subjects -s T40_OM_Post -localGI subjid T40_OM_Post setenv SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Actual FREESURFER_HOME /Applications/freesurfer build-stamp.txt: freesurfer-Darwin-lion-stable-pub-v5.3.0 Darwin MacBook-Pro-di-Marco.local 13.3.0 Darwin Kernel Version 13.3.0: Tue Jun 3 21:27:35 PDT 2014; root:xnu-2422.110.17~1/RELEASE_X86_64 x86_64 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 709 PhysMem: 5064M used (1404M wired), 1578M unused. ######################################## program versions used $Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 nicks Exp $ $Id: mri_motion_correct.fsl,v 1.14 2011/03/02 20:16:39 nicks Exp $ mri_convert -all-info ProgramName: mri_convert ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:42-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 FLIRT version 5.5 $Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks Exp $ mri_convert --version stable5 ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:43-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 Program nu_correct, built from: Package MNI N3, version 1.10, compiled by nicks@aspasia.local (i686-apple-darwin10.2.0) on 2010-02-26 at 14:19:30 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:44-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:44-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_normalize.c,v 1.73.2.1 2012/10/17 19:11:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:44-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_watershed.cpp,v 1.96.2.1 2011/11/08 22:18:44 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:44-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:44-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_segment.c,v 1.40 2011/03/02 00:04:24 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_label2label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:44-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_label2label.c,v 1.40.2.2 2013/04/02 16:26:15 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:44-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_em_register.c,v 1.84.2.3 2013/02/09 00:49:26 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:45-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_normalize.c,v 1.52.2.2 2012/10/17 19:11:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:45-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_register.c,v 1.78.2.3 2013/02/09 00:42:20 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:45-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_label.c,v 1.96.2.1 2012/08/28 22:11:20 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:45-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_pretess.c,v 1.20 2011/03/02 00:04:23 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:45-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_fill.c,v 1.118 2011/03/16 21:23:49 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:45-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_concatenate_lta ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:46-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_concatenate_lta.c,v 1.10 2011/03/16 21:23:48 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:46-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:46-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_smooth.c,v 1.28 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:46-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_inflate.c,v 1.43 2011/03/02 00:04:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:46-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:46-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:47-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:47-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:47-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:47-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_euler_number.c,v 1.8.2.2 2013/01/14 22:40:07 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:47-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:47-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:47-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_volmask.cpp,v 1.25 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:48-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_anatomical_stats.c,v 1.72 2011/03/02 00:04:26 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:48-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mrisp_paint.c,v 1.11 2011/03/02 00:04:35 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:48-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_curvature_stats.c,v 1.64 2011/03/02 00:04:30 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:49-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_calc.c,v 1.37.2.8 2013/01/28 17:05:17 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ ProgramName: mri_robust_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:49-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:49-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:49-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:49-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_or.c,v 1.3 2011/03/02 00:04:13 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:49-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-01:15:50-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ####################################### GCADIR /Applications/freesurfer/average GCA RB_all_2008-03-26.gca GCASkull RB_all_withskull_2008-03-26.gca AvgCurvTif average.curvature.filled.buckner40.tif GCSDIR /Applications/freesurfer/average GCS curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ####################################### \n\n New invocation of recon-all \n\n Wed Dec 16 09:58:27 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post /Applications/freesurfer/bin/recon-all -sd /Users/marco/Documents/T1s/pipelineT1/subjects -s T40_OM_Post -localGI subjid T40_OM_Post setenv SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Actual FREESURFER_HOME /Applications/freesurfer build-stamp.txt: freesurfer-Darwin-lion-stable-pub-v5.3.0 Darwin MacBook-Pro-di-Marco.local 13.3.0 Darwin Kernel Version 13.3.0: Tue Jun 3 21:27:35 PDT 2014; root:xnu-2422.110.17~1/RELEASE_X86_64 x86_64 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 709 PhysMem: 5511M used (1431M wired), 1197M unused. ######################################## program versions used $Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 nicks Exp $ $Id: mri_motion_correct.fsl,v 1.14 2011/03/02 20:16:39 nicks Exp $ mri_convert -all-info ProgramName: mri_convert ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:28-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 FLIRT version 5.5 $Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks Exp $ mri_convert --version stable5 ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:28-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 Program nu_correct, built from: Package MNI N3, version 1.10, compiled by nicks@aspasia.local (i686-apple-darwin10.2.0) on 2010-02-26 at 14:19:30 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_normalize.c,v 1.73.2.1 2012/10/17 19:11:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_watershed.cpp,v 1.96.2.1 2011/11/08 22:18:44 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_segment.c,v 1.40 2011/03/02 00:04:24 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_label2label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_label2label.c,v 1.40.2.2 2013/04/02 16:26:15 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_em_register.c,v 1.84.2.3 2013/02/09 00:49:26 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_normalize.c,v 1.52.2.2 2012/10/17 19:11:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_register.c,v 1.78.2.3 2013/02/09 00:42:20 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_label.c,v 1.96.2.1 2012/08/28 22:11:20 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_pretess.c,v 1.20 2011/03/02 00:04:23 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_fill.c,v 1.118 2011/03/16 21:23:49 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_concatenate_lta ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_concatenate_lta.c,v 1.10 2011/03/16 21:23:48 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_smooth.c,v 1.28 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_inflate.c,v 1.43 2011/03/02 00:04:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_euler_number.c,v 1.8.2.2 2013/01/14 22:40:07 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_volmask.cpp,v 1.25 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_anatomical_stats.c,v 1.72 2011/03/02 00:04:26 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mrisp_paint.c,v 1.11 2011/03/02 00:04:35 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_curvature_stats.c,v 1.64 2011/03/02 00:04:30 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_calc.c,v 1.37.2.8 2013/01/28 17:05:17 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ ProgramName: mri_robust_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_or.c,v 1.3 2011/03/02 00:04:13 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:58:29-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ####################################### GCADIR /Applications/freesurfer/average GCA RB_all_2008-03-26.gca GCASkull RB_all_withskull_2008-03-26.gca AvgCurvTif average.curvature.filled.buckner40.tif GCSDIR /Applications/freesurfer/average GCS curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ####################################### \n\n New invocation of recon-all \n\n Wed Dec 16 09:59:58 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post /Applications/freesurfer/bin/recon-all -sd /Users/marco/Documents/T1s/pipelineT1/subjects -s T40_OM_Post -localGI subjid T40_OM_Post setenv SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Actual FREESURFER_HOME /Applications/freesurfer build-stamp.txt: freesurfer-Darwin-lion-stable-pub-v5.3.0 Darwin MacBook-Pro-di-Marco.local 13.3.0 Darwin Kernel Version 13.3.0: Tue Jun 3 21:27:35 PDT 2014; root:xnu-2422.110.17~1/RELEASE_X86_64 x86_64 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 709 PhysMem: 5571M used (1447M wired), 1139M unused. ######################################## program versions used $Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 nicks Exp $ $Id: mri_motion_correct.fsl,v 1.14 2011/03/02 20:16:39 nicks Exp $ mri_convert -all-info ProgramName: mri_convert ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 FLIRT version 5.5 $Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks Exp $ mri_convert --version stable5 ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 Program nu_correct, built from: Package MNI N3, version 1.10, compiled by nicks@aspasia.local (i686-apple-darwin10.2.0) on 2010-02-26 at 14:19:30 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_normalize.c,v 1.73.2.1 2012/10/17 19:11:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_watershed.cpp,v 1.96.2.1 2011/11/08 22:18:44 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_segment.c,v 1.40 2011/03/02 00:04:24 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_label2label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_label2label.c,v 1.40.2.2 2013/04/02 16:26:15 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_em_register.c,v 1.84.2.3 2013/02/09 00:49:26 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_normalize.c,v 1.52.2.2 2012/10/17 19:11:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_register.c,v 1.78.2.3 2013/02/09 00:42:20 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_label.c,v 1.96.2.1 2012/08/28 22:11:20 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_pretess.c,v 1.20 2011/03/02 00:04:23 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_fill.c,v 1.118 2011/03/16 21:23:49 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_concatenate_lta ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_concatenate_lta.c,v 1.10 2011/03/16 21:23:48 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_smooth.c,v 1.28 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_inflate.c,v 1.43 2011/03/02 00:04:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_euler_number.c,v 1.8.2.2 2013/01/14 22:40:07 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_volmask.cpp,v 1.25 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_anatomical_stats.c,v 1.72 2011/03/02 00:04:26 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mrisp_paint.c,v 1.11 2011/03/02 00:04:35 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-07:59:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_curvature_stats.c,v 1.64 2011/03/02 00:04:30 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-08:00:00-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_calc.c,v 1.37.2.8 2013/01/28 17:05:17 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ ProgramName: mri_robust_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-08:00:00-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-08:00:00-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-08:00:00-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-08:00:00-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_or.c,v 1.3 2011/03/02 00:04:13 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-08:00:00-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/16-08:00:00-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ####################################### GCADIR /Applications/freesurfer/average GCA RB_all_2008-03-26.gca GCASkull RB_all_withskull_2008-03-26.gca AvgCurvTif average.curvature.filled.buckner40.tif GCSDIR /Applications/freesurfer/average GCS curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ####################################### INFO: current FREESURFER_HOME does not match that of previous processing. Current: /Applications/freesurfer Previous: /cdrom/Marco/freesurfer /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf #-------------------------------------------- #@# Local Gyrification Index lh Wed Dec 16 10:00:01 EET 2015 \n mris_compute_lgi --i lh.pial \n ================= rm -Rf /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial ================= ================= mkdir -p /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial ================= ================= mris_fill -c -r 1 lh.pial /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz ================= reading surface from lh.pial... writing filled volume to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz... conforming output volume setting resolution for intermediate calculations to 1.0000 ================= make_outer_surface('/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz',15,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer'); exit ================= 2015-12-16 10:00:07.180 MATLAB_maci64[54840:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> reading filled volume... closing volume... morphological closing done. writing outer surface... ================= mris_extract_main_component /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-main ================= counting number of connected components... 63138 voxel in cpt #1: X=2 [v=63138,e=189408,f=126272] located at (-23.055841, -12.147598, 24.207567) For the whole surface: X=2 [v=63138,e=189408,f=126272] One single component has been found nothing to do done ================= mris_smooth -nw -n 30 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-main ./lh.pial-outer-smoothed ================= smoothing for 30 iterations smoothing surface tessellation for 30 iterations... smoothing complete - recomputing first and second fundamental forms... ================= mris_euler_number ./lh.pial-outer-smoothed ================= euler # = v-e+f = 2g-2: 63138 - 189408 + 126272 = 2 --> 0 holes F =2V-4: 126272 = 126276-4 (0) 2E=3F: 378816 = 378816 (0) total defect index = 0 ================= mris_convert -n lh.pial-outer-smoothed /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc ================= ================= find_corresponding_center_FSformat('lh.pial','lh.pial-outer-smoothed',100,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial','/tmp/mrc_54822_.m'); exit ================= 2015-12-16 10:00:38.397 MATLAB_maci64[54906:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.07 sec) FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.02 sec) deltaT = 4.2200 ================= make_roi_paths('lh.pial','lh.pial-outer-smoothed',25,100,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial','/tmp/mrp_54822_.m'); exit ================= 2015-12-16 10:00:47.024 MATLAB_maci64[54963:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> loading datas ... FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.02 sec) FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) preparing outer mesh structure ... face 5000 / 126272 face 10000 / 126272 face 15000 / 126272 face 20000 / 126272 face 25000 / 126272 face 30000 / 126272 face 35000 / 126272 face 40000 / 126272 face 45000 / 126272 face 50000 / 126272 face 55000 / 126272 face 60000 / 126272 face 65000 / 126272 face 70000 / 126272 face 75000 / 126272 face 80000 / 126272 face 85000 / 126272 face 90000 / 126272 face 95000 / 126272 face 100000 / 126272 face 105000 / 126272 face 110000 / 126272 face 115000 / 126272 face 120000 / 126272 face 125000 / 126272 mesh_outer = vertices: [63138x3 double] faces: [126272x3 double] facesOfVertex: [63138x1 struct] preparing pial mesh structure ... ...searching for mesh edges...done (187.94 sec). ... creating path file for vertex 1 / 63138 area file for outer ROIs saved at 1 ... creating path file for vertex 101 / 63138 ... creating path file for vertex 201 / 63138 ... creating path file for vertex 301 / 63138 ... creating path file for vertex 401 / 63138 ... creating path file for vertex 501 / 63138 ... creating path file for vertex 601 / 63138 ... creating path file for vertex 701 / 63138 ... creating path file for vertex 801 / 63138 ... creating path file for vertex 901 / 63138 ... creating path file for vertex 1001 / 63138 ... creating path file for vertex 1101 / 63138 ... creating path file for vertex 1201 / 63138 ... creating path file for vertex 1301 / 63138 ... creating path file for vertex 1401 / 63138 ... creating path file for vertex 1501 / 63138 ... creating path file for vertex 1601 / 63138 ... creating path file for vertex 1701 / 63138 ... creating path file for vertex 1801 / 63138 ... creating path file for vertex 1901 / 63138 ... creating path file for vertex 2001 / 63138 ... creating path file for vertex 2101 / 63138 ... creating path file for vertex 2201 / 63138 ... creating path file for vertex 2301 / 63138 ... creating path file for vertex 2401 / 63138 ... creating path file for vertex 2501 / 63138 ... creating path file for vertex 2601 / 63138 ... creating path file for vertex 2701 / 63138 ... creating path file for vertex 2801 / 63138 ... creating path file for vertex 2901 / 63138 ... creating path file for vertex 3001 / 63138 ... creating path file for vertex 3101 / 63138 ... creating path file for vertex 3201 / 63138 ... creating path file for vertex 3301 / 63138 ... creating path file for vertex 3401 / 63138 ... creating path file for vertex 3501 / 63138 ... creating path file for vertex 3601 / 63138 ... creating path file for vertex 3701 / 63138 ... creating path file for vertex 3801 / 63138 ... creating path file for vertex 3901 / 63138 ... creating path file for vertex 4001 / 63138 ... creating path file for vertex 4101 / 63138 ... creating path file for vertex 4201 / 63138 ... creating path file for vertex 4301 / 63138 ... creating path file for vertex 4401 / 63138 ... creating path file for vertex 4501 / 63138 ... creating path file for vertex 4601 / 63138 ... creating path file for vertex 4701 / 63138 ... creating path file for vertex 4801 / 63138 ... creating path file for vertex 4901 / 63138 ... creating path file for vertex 5001 / 63138 area file for outer ROIs saved at 5001 ... creating path file for vertex 5101 / 63138 ... creating path file for vertex 5201 / 63138 ... creating path file for vertex 5301 / 63138 ... creating path file for vertex 5401 / 63138 ... creating path file for vertex 5501 / 63138 ... creating path file for vertex 5601 / 63138 ... creating path file for vertex 5701 / 63138 ... creating path file for vertex 5801 / 63138 ... creating path file for vertex 5901 / 63138 ... creating path file for vertex 6001 / 63138 ... creating path file for vertex 6101 / 63138 ... creating path file for vertex 6201 / 63138 ... creating path file for vertex 6301 / 63138 ... creating path file for vertex 6401 / 63138 ... creating path file for vertex 6501 / 63138 ... creating path file for vertex 6601 / 63138 ... creating path file for vertex 6701 / 63138 ... creating path file for vertex 6801 / 63138 ... creating path file for vertex 6901 / 63138 ... creating path file for vertex 7001 / 63138 ... creating path file for vertex 7101 / 63138 ... creating path file for vertex 7201 / 63138 ... creating path file for vertex 7301 / 63138 ... creating path file for vertex 7401 / 63138 ... creating path file for vertex 7501 / 63138 ... creating path file for vertex 7601 / 63138 ... creating path file for vertex 7701 / 63138 ... creating path file for vertex 7801 / 63138 ... creating path file for vertex 7901 / 63138 ... creating path file for vertex 8001 / 63138 ... creating path file for vertex 8101 / 63138 ... creating path file for vertex 8201 / 63138 ... creating path file for vertex 8301 / 63138 ... creating path file for vertex 8401 / 63138 ... creating path file for vertex 8501 / 63138 ... creating path file for vertex 8601 / 63138 ... creating path file for vertex 8701 / 63138 ... creating path file for vertex 8801 / 63138 ... creating path file for vertex 8901 / 63138 ... creating path file for vertex 9001 / 63138 ... creating path file for vertex 9101 / 63138 ... creating path file for vertex 9201 / 63138 ... creating path file for vertex 9301 / 63138 ... creating path file for vertex 9401 / 63138 ... creating path file for vertex 9501 / 63138 ... creating path file for vertex 9601 / 63138 ... creating path file for vertex 9701 / 63138 ... creating path file for vertex 9801 / 63138 ... creating path file for vertex 9901 / 63138 ... creating path file for vertex 10001 / 63138 area file for outer ROIs saved at 10001 ... creating path file for vertex 10101 / 63138 ... creating path file for vertex 10201 / 63138 ... creating path file for vertex 10301 / 63138 ... creating path file for vertex 10401 / 63138 ... creating path file for vertex 10501 / 63138 ... creating path file for vertex 10601 / 63138 ... creating path file for vertex 10701 / 63138 ... creating path file for vertex 10801 / 63138 ... creating path file for vertex 10901 / 63138 ... creating path file for vertex 11001 / 63138 ... creating path file for vertex 11101 / 63138 ... creating path file for vertex 11201 / 63138 ... creating path file for vertex 11301 / 63138 ... creating path file for vertex 11401 / 63138 ... creating path file for vertex 11501 / 63138 ... creating path file for vertex 11601 / 63138 ... creating path file for vertex 11701 / 63138 ... creating path file for vertex 11801 / 63138 ... creating path file for vertex 11901 / 63138 ... creating path file for vertex 12001 / 63138 ... creating path file for vertex 12101 / 63138 ... creating path file for vertex 12201 / 63138 ... creating path file for vertex 12301 / 63138 ... creating path file for vertex 12401 / 63138 ... creating path file for vertex 12501 / 63138 ... creating path file for vertex 12601 / 63138 ... creating path file for vertex 12701 / 63138 ... creating path file for vertex 12801 / 63138 ... creating path file for vertex 12901 / 63138 ... creating path file for vertex 13001 / 63138 ... creating path file for vertex 13101 / 63138 ... creating path file for vertex 13201 / 63138 ... creating path file for vertex 13301 / 63138 ... creating path file for vertex 13401 / 63138 ... creating path file for vertex 13501 / 63138 ... creating path file for vertex 13601 / 63138 ... creating path file for vertex 13701 / 63138 ... creating path file for vertex 13801 / 63138 ... creating path file for vertex 13901 / 63138 ... creating path file for vertex 14001 / 63138 ... creating path file for vertex 14101 / 63138 ... creating path file for vertex 14201 / 63138 ... creating path file for vertex 14301 / 63138 ... creating path file for vertex 14401 / 63138 ... creating path file for vertex 14501 / 63138 ... creating path file for vertex 14601 / 63138 ... creating path file for vertex 14701 / 63138 ... creating path file for vertex 14801 / 63138 ... creating path file for vertex 14901 / 63138 ... creating path file for vertex 15001 / 63138 area file for outer ROIs saved at 15001 ... creating path file for vertex 15101 / 63138 ... creating path file for vertex 15201 / 63138 ... creating path file for vertex 15301 / 63138 ... creating path file for vertex 15401 / 63138 ... creating path file for vertex 15501 / 63138 ... creating path file for vertex 15601 / 63138 ... creating path file for vertex 15701 / 63138 ... creating path file for vertex 15801 / 63138 ... creating path file for vertex 15901 / 63138 ... creating path file for vertex 16001 / 63138 ... creating path file for vertex 16101 / 63138 ... creating path file for vertex 16201 / 63138 ... creating path file for vertex 16301 / 63138 ... 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63138 ... creating path file for vertex 18501 / 63138 ... creating path file for vertex 18601 / 63138 ... creating path file for vertex 18701 / 63138 ... creating path file for vertex 18801 / 63138 ... creating path file for vertex 18901 / 63138 ... creating path file for vertex 19001 / 63138 ... creating path file for vertex 19101 / 63138 ... creating path file for vertex 19201 / 63138 ... creating path file for vertex 19301 / 63138 ... creating path file for vertex 19401 / 63138 ... creating path file for vertex 19501 / 63138 ... creating path file for vertex 19601 / 63138 ... creating path file for vertex 19701 / 63138 ... creating path file for vertex 19801 / 63138 ... creating path file for vertex 19901 / 63138 ... creating path file for vertex 20001 / 63138 area file for outer ROIs saved at 20001 ... creating path file for vertex 20101 / 63138 ... creating path file for vertex 20201 / 63138 ... creating path file for vertex 20301 / 63138 ... creating path file for vertex 20401 / 63138 ... creating path file for vertex 20501 / 63138 ... creating path file for vertex 20601 / 63138 ... creating path file for vertex 20701 / 63138 ... creating path file for vertex 20801 / 63138 ... creating path file for vertex 20901 / 63138 ... creating path file for vertex 21001 / 63138 ... creating path file for vertex 21101 / 63138 ... creating path file for vertex 21201 / 63138 ... creating path file for vertex 21301 / 63138 ... creating path file for vertex 21401 / 63138 ... creating path file for vertex 21501 / 63138 ... creating path file for vertex 21601 / 63138 ... creating path file for vertex 21701 / 63138 ... creating path file for vertex 21801 / 63138 ... creating path file for vertex 21901 / 63138 ... creating path file for vertex 22001 / 63138 ... creating path file for vertex 22101 / 63138 ... creating path file for vertex 22201 / 63138 ... creating path file for vertex 22301 / 63138 ... creating path file for vertex 22401 / 63138 ... creating path file for vertex 22501 / 63138 ... creating path file for vertex 22601 / 63138 ... creating path file for vertex 22701 / 63138 ... creating path file for vertex 22801 / 63138 ... creating path file for vertex 22901 / 63138 ... creating path file for vertex 23001 / 63138 ... creating path file for vertex 23101 / 63138 ... creating path file for vertex 23201 / 63138 ... creating path file for vertex 23301 / 63138 ... creating path file for vertex 23401 / 63138 ... creating path file for vertex 23501 / 63138 ... creating path file for vertex 23601 / 63138 ... creating path file for vertex 23701 / 63138 ... creating path file for vertex 23801 / 63138 ... creating path file for vertex 23901 / 63138 ... creating path file for vertex 24001 / 63138 ... creating path file for vertex 24101 / 63138 ... creating path file for vertex 24201 / 63138 ... creating path file for vertex 24301 / 63138 ... creating path file for vertex 24401 / 63138 ... creating path file for vertex 24501 / 63138 ... creating path file for vertex 24601 / 63138 ... creating path file for vertex 24701 / 63138 ... creating path file for vertex 24801 / 63138 ... creating path file for vertex 24901 / 63138 ... creating path file for vertex 25001 / 63138 area file for outer ROIs saved at 25001 ... creating path file for vertex 25101 / 63138 ... creating path file for vertex 25201 / 63138 ... creating path file for vertex 25301 / 63138 ... creating path file for vertex 25401 / 63138 ... creating path file for vertex 25501 / 63138 ... creating path file for vertex 25601 / 63138 ... creating path file for vertex 25701 / 63138 ... creating path file for vertex 25801 / 63138 ... creating path file for vertex 25901 / 63138 ... creating path file for vertex 26001 / 63138 ... creating path file for vertex 26101 / 63138 ... creating path file for vertex 26201 / 63138 ... creating path file for vertex 26301 / 63138 ... creating path file for vertex 26401 / 63138 ... creating path file for vertex 26501 / 63138 ... creating path file for vertex 26601 / 63138 ... creating path file for vertex 26701 / 63138 ... creating path file for vertex 26801 / 63138 ... creating path file for vertex 26901 / 63138 ... creating path file for vertex 27001 / 63138 ... creating path file for vertex 27101 / 63138 ... creating path file for vertex 27201 / 63138 ... creating path file for vertex 27301 / 63138 ... creating path file for vertex 27401 / 63138 ... creating path file for vertex 27501 / 63138 ... creating path file for vertex 27601 / 63138 ... creating path file for vertex 27701 / 63138 ... creating path file for vertex 27801 / 63138 ... creating path file for vertex 27901 / 63138 ... creating path file for vertex 28001 / 63138 ... creating path file for vertex 28101 / 63138 ... creating path file for vertex 28201 / 63138 ... creating path file for vertex 28301 / 63138 ... creating path file for vertex 28401 / 63138 ... creating path file for vertex 28501 / 63138 ... creating path file for vertex 28601 / 63138 ... creating path file for vertex 28701 / 63138 ... creating path file for vertex 28801 / 63138 ... creating path file for vertex 28901 / 63138 ... creating path file for vertex 29001 / 63138 ... creating path file for vertex 29101 / 63138 ... creating path file for vertex 29201 / 63138 ... creating path file for vertex 29301 / 63138 ... creating path file for vertex 29401 / 63138 ... creating path file for vertex 29501 / 63138 ... creating path file for vertex 29601 / 63138 ... creating path file for vertex 29701 / 63138 ... creating path file for vertex 29801 / 63138 ... creating path file for vertex 29901 / 63138 ... creating path file for vertex 30001 / 63138 area file for outer ROIs saved at 30001 ... creating path file for vertex 30101 / 63138 ... creating path file for vertex 30201 / 63138 ... creating path file for vertex 30301 / 63138 ... creating path file for vertex 30401 / 63138 ... creating path file for vertex 30501 / 63138 ... creating path file for vertex 30601 / 63138 ... creating path file for vertex 30701 / 63138 ... creating path file for vertex 30801 / 63138 ... creating path file for vertex 30901 / 63138 ... creating path file for vertex 31001 / 63138 ... creating path file for vertex 31101 / 63138 ... creating path file for vertex 31201 / 63138 ... creating path file for vertex 31301 / 63138 ... creating path file for vertex 31401 / 63138 ... creating path file for vertex 31501 / 63138 ... creating path file for vertex 31601 / 63138 ... creating path file for vertex 31701 / 63138 ... creating path file for vertex 31801 / 63138 ... creating path file for vertex 31901 / 63138 ... creating path file for vertex 32001 / 63138 ... creating path file for vertex 32101 / 63138 ... creating path file for vertex 32201 / 63138 ... creating path file for vertex 32301 / 63138 ... creating path file for vertex 32401 / 63138 ... creating path file for vertex 32501 / 63138 ... creating path file for vertex 32601 / 63138 ... creating path file for vertex 32701 / 63138 ... creating path file for vertex 32801 / 63138 ... creating path file for vertex 32901 / 63138 ... creating path file for vertex 33001 / 63138 ... creating path file for vertex 33101 / 63138 ... creating path file for vertex 33201 / 63138 ... creating path file for vertex 33301 / 63138 ... creating path file for vertex 33401 / 63138 ... creating path file for vertex 33501 / 63138 ... creating path file for vertex 33601 / 63138 ... creating path file for vertex 33701 / 63138 ... creating path file for vertex 33801 / 63138 ... creating path file for vertex 33901 / 63138 ... creating path file for vertex 34001 / 63138 ... creating path file for vertex 34101 / 63138 ... creating path file for vertex 34201 / 63138 ... creating path file for vertex 34301 / 63138 ... creating path file for vertex 34401 / 63138 ... creating path file for vertex 34501 / 63138 ... creating path file for vertex 34601 / 63138 ... creating path file for vertex 34701 / 63138 ... creating path file for vertex 34801 / 63138 ... creating path file for vertex 34901 / 63138 ... creating path file for vertex 35001 / 63138 area file for outer ROIs saved at 35001 ... creating path file for vertex 35101 / 63138 ... creating path file for vertex 35201 / 63138 ... creating path file for vertex 35301 / 63138 ... creating path file for vertex 35401 / 63138 ... creating path file for vertex 35501 / 63138 ... creating path file for vertex 35601 / 63138 ... creating path file for vertex 35701 / 63138 ... creating path file for vertex 35801 / 63138 ... creating path file for vertex 35901 / 63138 ... creating path file for vertex 36001 / 63138 ... creating path file for vertex 36101 / 63138 ... creating path file for vertex 36201 / 63138 ... creating path file for vertex 36301 / 63138 ... creating path file for vertex 36401 / 63138 ... creating path file for vertex 36501 / 63138 ... creating path file for vertex 36601 / 63138 ... creating path file for vertex 36701 / 63138 ... creating path file for vertex 36801 / 63138 ... creating path file for vertex 36901 / 63138 ... creating path file for vertex 37001 / 63138 ... creating path file for vertex 37101 / 63138 ... creating path file for vertex 37201 / 63138 ... creating path file for vertex 37301 / 63138 ... creating path file for vertex 37401 / 63138 ... creating path file for vertex 37501 / 63138 ... creating path file for vertex 37601 / 63138 ... creating path file for vertex 37701 / 63138 ... creating path file for vertex 37801 / 63138 ... creating path file for vertex 37901 / 63138 ... creating path file for vertex 38001 / 63138 ... creating path file for vertex 38101 / 63138 ... creating path file for vertex 38201 / 63138 ... creating path file for vertex 38301 / 63138 ... creating path file for vertex 38401 / 63138 ... creating path file for vertex 38501 / 63138 ... creating path file for vertex 38601 / 63138 ... creating path file for vertex 38701 / 63138 ... creating path file for vertex 38801 / 63138 ... creating path file for vertex 38901 / 63138 ... creating path file for vertex 39001 / 63138 ... creating path file for vertex 39101 / 63138 ... creating path file for vertex 39201 / 63138 ... creating path file for vertex 39301 / 63138 ... creating path file for vertex 39401 / 63138 ... creating path file for vertex 39501 / 63138 ... creating path file for vertex 39601 / 63138 ... creating path file for vertex 39701 / 63138 ... creating path file for vertex 39801 / 63138 ... creating path file for vertex 39901 / 63138 ... creating path file for vertex 40001 / 63138 area file for outer ROIs saved at 40001 ... creating path file for vertex 40101 / 63138 ... creating path file for vertex 40201 / 63138 ... creating path file for vertex 40301 / 63138 ... creating path file for vertex 40401 / 63138 ... creating path file for vertex 40501 / 63138 ... creating path file for vertex 40601 / 63138 ... creating path file for vertex 40701 / 63138 ... creating path file for vertex 40801 / 63138 ... creating path file for vertex 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vertex 43001 / 63138 ... creating path file for vertex 43101 / 63138 ... creating path file for vertex 43201 / 63138 ... creating path file for vertex 43301 / 63138 ... creating path file for vertex 43401 / 63138 ... creating path file for vertex 43501 / 63138 ... creating path file for vertex 43601 / 63138 ... creating path file for vertex 43701 / 63138 ... creating path file for vertex 43801 / 63138 ... creating path file for vertex 43901 / 63138 ... creating path file for vertex 44001 / 63138 ... creating path file for vertex 44101 / 63138 ... creating path file for vertex 44201 / 63138 ... creating path file for vertex 44301 / 63138 ... creating path file for vertex 44401 / 63138 ... creating path file for vertex 44501 / 63138 ... creating path file for vertex 44601 / 63138 ... creating path file for vertex 44701 / 63138 ... creating path file for vertex 44801 / 63138 ... creating path file for vertex 44901 / 63138 ... creating path file for vertex 45001 / 63138 area file for outer ROIs saved at 45001 ... creating path file for vertex 45101 / 63138 ... creating path file for vertex 45201 / 63138 ... creating path file for vertex 45301 / 63138 ... creating path file for vertex 45401 / 63138 ... creating path file for vertex 45501 / 63138 ... creating path file for vertex 45601 / 63138 ... creating path file for vertex 45701 / 63138 ... creating path file for vertex 45801 / 63138 ... creating path file for vertex 45901 / 63138 ... creating path file for vertex 46001 / 63138 ... creating path file for vertex 46101 / 63138 ... creating path file for vertex 46201 / 63138 ... creating path file for vertex 46301 / 63138 ... creating path file for vertex 46401 / 63138 ... creating path file for vertex 46501 / 63138 ... creating path file for vertex 46601 / 63138 ... creating path file for vertex 46701 / 63138 ... creating path file for vertex 46801 / 63138 ... creating path file for vertex 46901 / 63138 ... creating path file for vertex 47001 / 63138 ... creating path file for vertex 47101 / 63138 ... creating path file for vertex 47201 / 63138 ... creating path file for vertex 47301 / 63138 ... creating path file for vertex 47401 / 63138 ... creating path file for vertex 47501 / 63138 ... creating path file for vertex 47601 / 63138 ... creating path file for vertex 47701 / 63138 ... creating path file for vertex 47801 / 63138 ... creating path file for vertex 47901 / 63138 ... creating path file for vertex 48001 / 63138 ... creating path file for vertex 48101 / 63138 ... creating path file for vertex 48201 / 63138 ... creating path file for vertex 48301 / 63138 ... creating path file for vertex 48401 / 63138 ... creating path file for vertex 48501 / 63138 ... creating path file for vertex 48601 / 63138 ... creating path file for vertex 48701 / 63138 ... creating path file for vertex 48801 / 63138 ... creating path file for vertex 48901 / 63138 ... creating path file for vertex 49001 / 63138 ... creating path file for vertex 49101 / 63138 ... creating path file for vertex 49201 / 63138 non geodesic regions removed from the patch ... creating path file for vertex 49301 / 63138 ... creating path file for vertex 49401 / 63138 ... creating path file for vertex 49501 / 63138 ... creating path file for vertex 49601 / 63138 ... creating path file for vertex 49701 / 63138 ... creating path file for vertex 49801 / 63138 ... creating path file for vertex 49901 / 63138 ... creating path file for vertex 50001 / 63138 area file for outer ROIs saved at 50001 ... creating path file for vertex 50101 / 63138 ... creating path file for vertex 50201 / 63138 ... creating path file for vertex 50301 / 63138 ... creating path file for vertex 50401 / 63138 ... creating path file for vertex 50501 / 63138 ... creating path file for vertex 50601 / 63138 ... creating path file for vertex 50701 / 63138 ... creating path file for vertex 50801 / 63138 ... creating path file for vertex 50901 / 63138 ... creating path file for vertex 51001 / 63138 ... creating path file for vertex 51101 / 63138 ... creating path file for vertex 51201 / 63138 ... creating path file for vertex 51301 / 63138 ... creating path file for vertex 51401 / 63138 non geodesic regions removed from the patch ... creating path file for vertex 51501 / 63138 ... creating path file for vertex 51601 / 63138 ... creating path file for vertex 51701 / 63138 ... creating path file for vertex 51801 / 63138 ... creating path file for vertex 51901 / 63138 ... creating path file for vertex 52001 / 63138 ... creating path file for vertex 52101 / 63138 ... creating path file for vertex 52201 / 63138 ... creating path file for vertex 52301 / 63138 ... creating path file for vertex 52401 / 63138 ... creating path file for vertex 52501 / 63138 ... creating path file for vertex 52601 / 63138 ... creating path file for vertex 52701 / 63138 ... creating path file for vertex 52801 / 63138 ... creating path file for vertex 52901 / 63138 ... creating path file for vertex 53001 / 63138 ... creating path file for vertex 53101 / 63138 ... creating path file for vertex 53201 / 63138 ... creating path file for vertex 53301 / 63138 ... creating path file for vertex 53401 / 63138 ... creating path file for vertex 53501 / 63138 ... creating path file for vertex 53601 / 63138 ... creating path file for vertex 53701 / 63138 ... creating path file for vertex 53801 / 63138 ... creating path file for vertex 53901 / 63138 ... creating path file for vertex 54001 / 63138 ... creating path file for vertex 54101 / 63138 ... creating path file for vertex 54201 / 63138 ... creating path file for vertex 54301 / 63138 ... creating path file for vertex 54401 / 63138 ... creating path file for vertex 54501 / 63138 ... creating path file for vertex 54601 / 63138 ... creating path file for vertex 54701 / 63138 ... creating path file for vertex 54801 / 63138 ... creating path file for vertex 54901 / 63138 ... creating path file for vertex 55001 / 63138 area file for outer ROIs saved at 55001 ... creating path file for vertex 55101 / 63138 ... creating path file for vertex 55201 / 63138 ... creating path file for vertex 55301 / 63138 ... creating path file for vertex 55401 / 63138 ... creating path file for vertex 55501 / 63138 ... creating path file for vertex 55601 / 63138 ... creating path file for vertex 55701 / 63138 ... creating path file for vertex 55801 / 63138 ... creating path file for vertex 55901 / 63138 ... creating path file for vertex 56001 / 63138 ... creating path file for vertex 56101 / 63138 ... creating path file for vertex 56201 / 63138 ... creating path file for vertex 56301 / 63138 ... creating path file for vertex 56401 / 63138 ... creating path file for vertex 56501 / 63138 ... creating path file for vertex 56601 / 63138 ... creating path file for vertex 56701 / 63138 ... creating path file for vertex 56801 / 63138 ... creating path file for vertex 56901 / 63138 ... creating path file for vertex 57001 / 63138 ... creating path file for vertex 57101 / 63138 ... creating path file for vertex 57201 / 63138 ... creating path file for vertex 57301 / 63138 ... creating path file for vertex 57401 / 63138 ... creating path file for vertex 57501 / 63138 ... creating path file for vertex 57601 / 63138 ... creating path file for vertex 57701 / 63138 ... creating path file for vertex 57801 / 63138 ... creating path file for vertex 57901 / 63138 ... creating path file for vertex 58001 / 63138 ... creating path file for vertex 58101 / 63138 ... creating path file for vertex 58201 / 63138 ... creating path file for vertex 58301 / 63138 ... creating path file for vertex 58401 / 63138 ... creating path file for vertex 58501 / 63138 ... creating path file for vertex 58601 / 63138 ... creating path file for vertex 58701 / 63138 ... creating path file for vertex 58801 / 63138 ... creating path file for vertex 58901 / 63138 ... creating path file for vertex 59001 / 63138 ... creating path file for vertex 59101 / 63138 ... creating path file for vertex 59201 / 63138 ... creating path file for vertex 59301 / 63138 ... creating path file for vertex 59401 / 63138 ... creating path file for vertex 59501 / 63138 ... creating path file for vertex 59601 / 63138 ... creating path file for vertex 59701 / 63138 ... creating path file for vertex 59801 / 63138 ... creating path file for vertex 59901 / 63138 ... creating path file for vertex 60001 / 63138 area file for outer ROIs saved at 60001 ... creating path file for vertex 60101 / 63138 ... creating path file for vertex 60201 / 63138 ... creating path file for vertex 60301 / 63138 ... creating path file for vertex 60401 / 63138 ... creating path file for vertex 60501 / 63138 ... creating path file for vertex 60601 / 63138 ... creating path file for vertex 60701 / 63138 ... creating path file for vertex 60801 / 63138 ... creating path file for vertex 60901 / 63138 ... creating path file for vertex 61001 / 63138 ... creating path file for vertex 61101 / 63138 ... creating path file for vertex 61201 / 63138 ... creating path file for vertex 61301 / 63138 ... creating path file for vertex 61401 / 63138 ... creating path file for vertex 61501 / 63138 ... creating path file for vertex 61601 / 63138 ... creating path file for vertex 61701 / 63138 ... creating path file for vertex 61801 / 63138 ... creating path file for vertex 61901 / 63138 ... creating path file for vertex 62001 / 63138 ... creating path file for vertex 62101 / 63138 ... creating path file for vertex 62201 / 63138 ... creating path file for vertex 62301 / 63138 ... creating path file for vertex 62401 / 63138 ... creating path file for vertex 62501 / 63138 ... creating path file for vertex 62601 / 63138 ... creating path file for vertex 62701 / 63138 ... creating path file for vertex 62801 / 63138 ... creating path file for vertex 62901 / 63138 ... creating path file for vertex 63001 / 63138 ... creating path file for vertex 63101 / 63138 saving area file in matlab format... DONE. deltaT = 902.2700 ================= mri_path2label --confillxfn lh.pial /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/mri_path2label.input ================= Reading lh.pial Connecting and filling vertices in path at fillseed 824 Finding path..................................................................................................................................................................................................................................................................................................................................................................... done Filling 824 nlabel 10384 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000001.label Connecting and filling vertices in path at fillseed 2302 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 2302 nlabel 10464 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000101.label Connecting and filling vertices in path at fillseed 2330 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 2330 nlabel 15194 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000201.label Connecting and filling vertices in path at fillseed 1693 Finding path..................................................................................................................................................................................................................................................................................................................................................... done Filling 1693 nlabel 10506 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000301.label Connecting and filling vertices in path at fillseed 2229 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 2229 nlabel 9383 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000401.label Connecting and filling vertices in path at fillseed 1638 Finding path.................................................................................................................................................................................................................................................................................................. done Filling 1638 nlabel 8858 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000501.label Connecting and filling vertices in path at fillseed 1740 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 1740 nlabel 10395 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000601.label Connecting and filling vertices in path at fillseed 2720 Finding path............................................................................................................................................................................................................................................................................... done Filling 2720 nlabel 8396 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000701.label Connecting and filling vertices in path at fillseed 3864 Finding path......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 3864 nlabel 8493 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000801.label Connecting and filling vertices in path at fillseed 2940 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 2940 nlabel 16014 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000901.label Connecting and filling vertices in path at fillseed 4058 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 4058 nlabel 8997 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001001.label Connecting and filling vertices in path at fillseed 6264 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 6264 nlabel 8223 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001101.label Connecting and filling vertices in path at fillseed 4587 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 4587 nlabel 8054 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001201.label Connecting and filling vertices in path at fillseed 5425 Finding path............................................................................................................................................................................................................................................................................................................................ done Filling 5425 nlabel 8945 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001301.label Connecting and filling vertices in path at fillseed 6340 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 6340 nlabel 9271 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001401.label Connecting and filling vertices in path at fillseed 4029 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 4029 nlabel 9674 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001501.label Connecting and filling vertices in path at fillseed 6980 Finding path............................................................................................................................................................................................................................................................................................................................................................. done Filling 6980 nlabel 6414 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001601.label Connecting and filling vertices in path at fillseed 5020 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 5020 nlabel 14735 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001701.label Connecting and filling vertices in path at fillseed 6995 Finding path............................................................................................................................................................................................................................................ done Filling 6995 nlabel 5205 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001801.label Connecting and filling vertices in path at fillseed 7859 Finding path...................................................................................................................................................................................................... done Filling 7859 nlabel 4809 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001901.label Connecting and filling vertices in path at fillseed 7036 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 7036 nlabel 8627 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002001.label Connecting and filling vertices in path at fillseed 5638 Finding path................................................................................................................................................................................................................................................................................................................................. done Filling 5638 nlabel 9035 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002101.label Connecting and filling vertices in path at fillseed 6621 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 6621 nlabel 14796 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002201.label Connecting and filling vertices in path at fillseed 7907 Finding path.............................................................................................................................................................................................................................................................................................................................................. done Filling 7907 nlabel 8577 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002301.label Connecting and filling vertices in path at fillseed 5794 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 5794 nlabel 14921 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002401.label Connecting and filling vertices in path at fillseed 7359 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 7359 nlabel 14477 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002501.label Connecting and filling vertices in path at fillseed 7516 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 7516 nlabel 14780 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002601.label Connecting and filling vertices in path at fillseed 9798 Finding path..................................................................................................................................................................................................................................................................................................................................... done Filling 9798 nlabel 6099 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002701.label Connecting and filling vertices in path at fillseed 8915 Finding path....................................................................................................................................................................................................................................................................................................................... done Filling 8915 nlabel 8568 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002801.label Connecting and filling vertices in path at fillseed 8173 Finding path............................................................................................................................................................................................................................................................................................................................................ done Filling 8173 nlabel 8819 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002901.label Connecting and filling vertices in path at fillseed 9395 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 9395 nlabel 14531 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003001.label Connecting and filling vertices in path at fillseed 10782 Finding path............................................................................................................................................................. done Filling 10782 nlabel 4094 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003101.label Connecting and filling vertices in path at fillseed 6639 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 6639 nlabel 14525 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003201.label Connecting and filling vertices in path at fillseed 9950 Finding path.................................................................................................................................................................................................................................................................................... done Filling 9950 nlabel 8527 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003301.label Connecting and filling vertices in path at fillseed 8896 Finding path............................................................................................................................................................................................................................................................ done Filling 8896 nlabel 5341 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003401.label Connecting and filling vertices in path at fillseed 11884 Finding path............................................................................................................................................................ done Filling 11884 nlabel 3626 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003501.label Connecting and filling vertices in path at fillseed 10527 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 10527 nlabel 14726 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003601.label Connecting and filling vertices in path at fillseed 13098 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 13098 nlabel 8019 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003701.label Connecting and filling vertices in path at fillseed 12040 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 12040 nlabel 9392 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003801.label Connecting and filling vertices in path at fillseed 9981 Finding path........................................................................................................................................................................................................................................................................................................... done Filling 9981 nlabel 7243 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003901.label Connecting and filling vertices in path at fillseed 13025 Finding path................................................................................................................................ done Filling 13025 nlabel 3519 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004001.label Connecting and filling vertices in path at fillseed 11615 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 11615 nlabel 16454 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004101.label Connecting and filling vertices in path at fillseed 10401 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 10401 nlabel 15696 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004201.label Connecting and filling vertices in path at fillseed 11031 Finding path................................................................................................................................................................................................................................................................... done Filling 11031 nlabel 9647 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004301.label Connecting and filling vertices in path at fillseed 9321 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 9321 nlabel 15267 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004401.label Connecting and filling vertices in path at fillseed 11614 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 11614 nlabel 16449 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004501.label Connecting and filling vertices in path at fillseed 15342 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 15342 nlabel 6932 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004601.label Connecting and filling vertices in path at fillseed 11265 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 11265 nlabel 10715 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004701.label Connecting and filling vertices in path at fillseed 14434 Finding path................................................................................................................................................................................................................................................................................................... done Filling 14434 nlabel 9706 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004801.label Connecting and filling vertices in path at fillseed 9321 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 9321 nlabel 10302 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004901.label Connecting and filling vertices in path at fillseed 20070 Finding path................................................................................................................................................................... done Filling 20070 nlabel 4409 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005001.label Connecting and filling vertices in path at fillseed 17779 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 17779 nlabel 7709 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005101.label Connecting and filling vertices in path at fillseed 14568 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 14568 nlabel 9567 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005201.label Connecting and filling vertices in path at fillseed 13385 Finding path.................................................................................................................................................................................................................................... done Filling 13385 nlabel 7536 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005301.label Connecting and filling vertices in path at fillseed 15039 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 15039 nlabel 14671 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005401.label Connecting and filling vertices in path at fillseed 18897 Finding path............................................................................................................................................................................................................................................................................................................................................................................................ done Filling 18897 nlabel 6921 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005501.label Connecting and filling vertices in path at fillseed 13536 Finding path............................................................................................................................................................................................................................................................................................................................. done Filling 13536 nlabel 9942 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005601.label Connecting and filling vertices in path at fillseed 22537 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 22537 nlabel 3236 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005701.label Connecting and filling vertices in path at fillseed 15007 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 15007 nlabel 14112 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005801.label Connecting and filling vertices in path at fillseed 23797 Finding path.................................................................................................................................................................................................................................................................................................................................................................... done Filling 23797 nlabel 7248 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005901.label Connecting and filling vertices in path at fillseed 13536 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 13536 nlabel 11254 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006001.label Connecting and filling vertices in path at fillseed 14472 Finding path.................................................................................................................................................................................................................................................................................................................................................. done Filling 14472 nlabel 8406 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006101.label Connecting and filling vertices in path at fillseed 15408 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 15408 nlabel 6386 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006201.label Connecting and filling vertices in path at fillseed 22521 Finding path................................................................................................................................................................... done Filling 22521 nlabel 3642 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006301.label Connecting and filling vertices in path at fillseed 21352 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 21352 nlabel 7643 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006401.label Connecting and filling vertices in path at fillseed 17941 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 17941 nlabel 9172 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006501.label Connecting and filling vertices in path at fillseed 16591 Finding path..................................................................................................................................................................................................................................................................................................... done Filling 16591 nlabel 6182 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006601.label Connecting and filling vertices in path at fillseed 16194 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 16194 nlabel 13861 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006701.label Connecting and filling vertices in path at fillseed 25026 Finding path............................................................................................................................................................................................................................................................................................................................................................................ done Filling 25026 nlabel 5526 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006801.label Connecting and filling vertices in path at fillseed 16116 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 16116 nlabel 15709 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006901.label Connecting and filling vertices in path at fillseed 18172 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 18172 nlabel 10375 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007001.label Connecting and filling vertices in path at fillseed 19464 Finding path................................................................................................................................................................................................................................................................................................................................................................. done Filling 19464 nlabel 10333 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007101.label Connecting and filling vertices in path at fillseed 19850 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 19850 nlabel 16322 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007201.label Connecting and filling vertices in path at fillseed 22611 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 22611 nlabel 8355 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007301.label Connecting and filling vertices in path at fillseed 22736 Finding path..................................................................................................................................................................................................................................................................................... done Filling 22736 nlabel 9147 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007401.label Connecting and filling vertices in path at fillseed 15653 Finding path........................................................................................................................................................................................................................................ done Filling 15653 nlabel 7026 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007501.label Connecting and filling vertices in path at fillseed 27493 Finding path...................................................................................................................................................................................................... done Filling 27493 nlabel 3660 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007601.label Connecting and filling vertices in path at fillseed 25079 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 25079 nlabel 8717 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007701.label Connecting and filling vertices in path at fillseed 20630 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 20630 nlabel 7663 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007801.label Connecting and filling vertices in path at fillseed 19429 Finding path............................................................................................................................................................................................................... done Filling 19429 nlabel 9341 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007901.label Connecting and filling vertices in path at fillseed 27482 Finding path................................................................................................................................................................................................................................................................................................................................................. done Filling 27482 nlabel 4201 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008001.label Connecting and filling vertices in path at fillseed 19769 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 19769 nlabel 18195 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008101.label Connecting and filling vertices in path at fillseed 24016 Finding path........................................................................................................................................................................................................................................................................ done Filling 24016 nlabel 9277 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008201.label Connecting and filling vertices in path at fillseed 20554 Finding path............................................................................................................................................................................................................................................................ done Filling 20554 nlabel 9079 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008301.label Connecting and filling vertices in path at fillseed 21088 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 21088 nlabel 15729 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008401.label Connecting and filling vertices in path at fillseed 19768 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 19768 nlabel 16477 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008501.label Connecting and filling vertices in path at fillseed 23031 Finding path......................................................................................................................................................................................................................................................................................................................... done Filling 23031 nlabel 7545 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008601.label Connecting and filling vertices in path at fillseed 20247 Finding path......................................................................................................................................................................................................................................................... done Filling 20247 nlabel 7069 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008701.label Connecting and filling vertices in path at fillseed 21077 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 21077 nlabel 16003 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008801.label Connecting and filling vertices in path at fillseed 23533 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 23533 nlabel 16659 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008901.label Connecting and filling vertices in path at fillseed 24553 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 24553 nlabel 11934 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009001.label Connecting and filling vertices in path at fillseed 25318 Finding path........................................................................................................................................................................................................................................................................................... done Filling 25318 nlabel 9329 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009101.label Connecting and filling vertices in path at fillseed 24437 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 24437 nlabel 8545 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009201.label Connecting and filling vertices in path at fillseed 32125 Finding path........................................................................................................................................................................................................................................................................................................................................................ done Filling 32125 nlabel 4161 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009301.label Connecting and filling vertices in path at fillseed 26266 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 26266 nlabel 8461 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009401.label Connecting and filling vertices in path at fillseed 23104 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 23104 nlabel 8061 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009501.label Connecting and filling vertices in path at fillseed 23946 Finding path..................................................................................................................................................................................................... done Filling 23946 nlabel 6263 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009601.label Connecting and filling vertices in path at fillseed 23505 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 23505 nlabel 16024 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009701.label Connecting and filling vertices in path at fillseed 23518 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 23518 nlabel 17229 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009801.label Connecting and filling vertices in path at fillseed 22177 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 22177 nlabel 11798 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009901.label Connecting and filling vertices in path at fillseed 24340 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 24340 nlabel 9626 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010001.label Connecting and filling vertices in path at fillseed 24113 Finding path........................................................................................................................................................................................................................................................................................................................................... done Filling 24113 nlabel 7180 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010101.label Connecting and filling vertices in path at fillseed 36646 Finding path................................................................................................................................................... done Filling 36646 nlabel 2151 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010201.label Connecting and filling vertices in path at fillseed 27518 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 27518 nlabel 6881 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010301.label Connecting and filling vertices in path at fillseed 27723 Finding path................................................................................................................................................................................................................................................................................................................................................................................. done Filling 27723 nlabel 9947 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010401.label Connecting and filling vertices in path at fillseed 26283 Finding path........................................................................................................................................................................................ done Filling 26283 nlabel 4603 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010501.label Connecting and filling vertices in path at fillseed 35517 Finding path............................................................................................................................................................................ done Filling 35517 nlabel 3361 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010601.label Connecting and filling vertices in path at fillseed 33268 Finding path..................................................................................................................................................................................................................................................................................................................................................................................... done Filling 33268 nlabel 3121 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010701.label Connecting and filling vertices in path at fillseed 27589 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 27589 nlabel 8829 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010801.label Connecting and filling vertices in path at fillseed 26751 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 26751 nlabel 8298 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010901.label Connecting and filling vertices in path at fillseed 26854 Finding path........................................................................................................................................................................................................................................................ done Filling 26854 nlabel 8682 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011001.label Connecting and filling vertices in path at fillseed 36644 Finding path.................................................................................................................................................... done Filling 36644 nlabel 2116 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011101.label Connecting and filling vertices in path at fillseed 27518 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 27518 nlabel 6345 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011201.label Connecting and filling vertices in path at fillseed 28943 Finding path............................................................................................................................................................................................................................................................................................................................................................................... done Filling 28943 nlabel 9030 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011301.label Connecting and filling vertices in path at fillseed 36694 Finding path...................................................................................................................................................... done Filling 36694 nlabel 3786 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011401.label Connecting and filling vertices in path at fillseed 36654 Finding path................................................................................................................................................................................................................................................................... done Filling 36654 nlabel 2356 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011501.label Connecting and filling vertices in path at fillseed 35515 Finding path..................................................................................................................................................................................................................................................................................................................................................... done Filling 35515 nlabel 3420 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011601.label Connecting and filling vertices in path at fillseed 28944 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 28944 nlabel 9515 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011701.label Connecting and filling vertices in path at fillseed 30477 Finding path........................................................................................................................................................................................................................................................................................................................... done Filling 30477 nlabel 7525 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011801.label Connecting and filling vertices in path at fillseed 28049 Finding path............................................................................................................................................................................................................................................. done Filling 28049 nlabel 6936 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011901.label Connecting and filling vertices in path at fillseed 37716 Finding path............................................................................................................................................................................................... done Filling 37716 nlabel 3568 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012001.label Connecting and filling vertices in path at fillseed 37789 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 37789 nlabel 6461 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012101.label Connecting and filling vertices in path at fillseed 33838 Finding path............................................................................................................................................................................................................................................................................................................................... done Filling 33838 nlabel 9152 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012201.label Connecting and filling vertices in path at fillseed 32307 Finding path.................................................................................................................................................................................... done Filling 32307 nlabel 6415 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012301.label Connecting and filling vertices in path at fillseed 29695 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 29695 nlabel 13982 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012401.label Connecting and filling vertices in path at fillseed 39856 Finding path........................................................................................................................................................................................................................................................................................ done Filling 39856 nlabel 4666 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012501.label Connecting and filling vertices in path at fillseed 38953 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 38953 nlabel 8838 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012601.label Connecting and filling vertices in path at fillseed 33714 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 33714 nlabel 7290 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012701.label Connecting and filling vertices in path at fillseed 33879 Finding path........................................................................................................................................................................................................................................................................................................................................... done Filling 33879 nlabel 8417 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012801.label Connecting and filling vertices in path at fillseed 34105 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 34105 nlabel 15679 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012901.label Connecting and filling vertices in path at fillseed 37825 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 37825 nlabel 7531 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013001.label Connecting and filling vertices in path at fillseed 37250 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 37250 nlabel 23850 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013101.label Connecting and filling vertices in path at fillseed 30423 Finding path........................................................................................................................................................................................................................................................................................................................................ done Filling 30423 nlabel 7370 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013201.label Connecting and filling vertices in path at fillseed 32957 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 32957 nlabel 15561 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013301.label Connecting and filling vertices in path at fillseed 38854 Finding path.................................................................................................................................................................................................................................................................................................................................................. done Filling 38854 nlabel 4497 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013401.label Connecting and filling vertices in path at fillseed 35111 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 35111 nlabel 23548 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013501.label Connecting and filling vertices in path at fillseed 37250 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 37250 nlabel 22474 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013601.label Connecting and filling vertices in path at fillseed 35030 Finding path................................................................................................................................................................................................................................................................................................................................................................................. done Filling 35030 nlabel 8567 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013701.label Connecting and filling vertices in path at fillseed 35238 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 35238 nlabel 31080 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013801.label Connecting and filling vertices in path at fillseed 35156 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 35156 nlabel 24243 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013901.label Connecting and filling vertices in path at fillseed 40156 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 40156 nlabel 8629 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014001.label Connecting and filling vertices in path at fillseed 38856 Finding path.......................................................................................................................................................................................... done Filling 38856 nlabel 4083 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014101.label Connecting and filling vertices in path at fillseed 37701 Finding path............................................................................................................................................................................................................................................. done Filling 37701 nlabel 1807 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014201.label Connecting and filling vertices in path at fillseed 36370 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 36370 nlabel 15514 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014301.label Connecting and filling vertices in path at fillseed 37428 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 37428 nlabel 23890 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014401.label Connecting and filling vertices in path at fillseed 35962 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 35962 nlabel 8025 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014501.label Connecting and filling vertices in path at fillseed 34677 Finding path.................................................................................................................................................................................. done Filling 34677 nlabel 6131 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014601.label Connecting and filling vertices in path at fillseed 39813 Finding path........................................................................................................................................................................................................... done Filling 39813 nlabel 3068 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014701.label Connecting and filling vertices in path at fillseed 40964 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 40964 nlabel 7349 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014801.label Connecting and filling vertices in path at fillseed 37390 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 37390 nlabel 21501 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014901.label Connecting and filling vertices in path at fillseed 37760 Finding path.................................................................................................................................................................................................................................... done Filling 37760 nlabel 3466 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015001.label Connecting and filling vertices in path at fillseed 46214 Finding path................................................................................................................................................................................................................................ done Filling 46214 nlabel 2118 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015101.label Connecting and filling vertices in path at fillseed 38581 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 38581 nlabel 29962 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015201.label Connecting and filling vertices in path at fillseed 45246 Finding path................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 45246 nlabel 7945 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015301.label Connecting and filling vertices in path at fillseed 39211 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 39211 nlabel 6945 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015401.label Connecting and filling vertices in path at fillseed 41443 Finding path......................................................................................................................................................................................................................................................................................................................................................... done Filling 41443 nlabel 6520 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015501.label Connecting and filling vertices in path at fillseed 47352 Finding path................................................................................................................................................................................ done Filling 47352 nlabel 2532 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015601.label Connecting and filling vertices in path at fillseed 47345 Finding path................................................................................................................................................................................................................ done Filling 47345 nlabel 3570 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015701.label Connecting and filling vertices in path at fillseed 43089 Finding path.......................................................................................................................................................................................................................................................................................................................................................................... done Filling 43089 nlabel 8142 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015801.label Connecting and filling vertices in path at fillseed 128627 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 128627 nlabel 8150 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015901.label Connecting and filling vertices in path at fillseed 36847 Finding path............................................................................................................................................................................ done Filling 36847 nlabel 6327 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016001.label Connecting and filling vertices in path at fillseed 47327 Finding path...................................................................................................................................................................... done Filling 47327 nlabel 2383 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016101.label Connecting and filling vertices in path at fillseed 39618 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 39618 nlabel 102114 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016201.label Connecting and filling vertices in path at fillseed 44113 Finding path................................................................................................................................................................................................................................................................................................................................................................................. done Filling 44113 nlabel 8126 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016301.label Connecting and filling vertices in path at fillseed 39369 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 39369 nlabel 9809 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016401.label Connecting and filling vertices in path at fillseed 36874 Finding path.......................................................................................................................................................................................... done Filling 36874 nlabel 6075 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016501.label Connecting and filling vertices in path at fillseed 43936 Finding path.............................................................................................................................................................................................. done Filling 43936 nlabel 2976 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016601.label Connecting and filling vertices in path at fillseed 42999 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 42999 nlabel 7272 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016701.label Connecting and filling vertices in path at fillseed 47523 Finding path.................................................................................................................................................................................................................................................................................................................................................... done Filling 47523 nlabel 7924 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016801.label Connecting and filling vertices in path at fillseed 40488 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 40488 nlabel 10452 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016901.label Connecting and filling vertices in path at fillseed 43156 Finding path......................................................................................................................................................................................... done Filling 43156 nlabel 5721 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017001.label Connecting and filling vertices in path at fillseed 43695 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 43695 nlabel 25061 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017101.label Connecting and filling vertices in path at fillseed 48507 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 48507 nlabel 7375 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017201.label Connecting and filling vertices in path at fillseed 43646 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 43646 nlabel 23666 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017301.label Connecting and filling vertices in path at fillseed 48424 Finding path................................................................................................................................................................................................ done Filling 48424 nlabel 2350 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017401.label Connecting and filling vertices in path at fillseed 44667 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 44667 nlabel 7609 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017501.label Connecting and filling vertices in path at fillseed 46211 Finding path....................................................................................................................................................................................................... done Filling 46211 nlabel 3985 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017601.label Connecting and filling vertices in path at fillseed 51857 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 51857 nlabel 6757 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017701.label Connecting and filling vertices in path at fillseed 43741 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 43741 nlabel 23319 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017801.label Connecting and filling vertices in path at fillseed 44750 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 44750 nlabel 22119 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017901.label Connecting and filling vertices in path at fillseed 49542 Finding path......................................................................................................................................................................... done Filling 49542 nlabel 1237 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018001.label Connecting and filling vertices in path at fillseed 48392 Finding path.............................................................................................................................. done Filling 48392 nlabel 2013 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018101.label Connecting and filling vertices in path at fillseed 46211 Finding path.............................................................................................................................................................................................................................................................. done Filling 46211 nlabel 4216 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018201.label Connecting and filling vertices in path at fillseed 46345 Finding path................................................................................................................................................................................................................................................................................................................................................................................ done Filling 46345 nlabel 8309 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018301.label Connecting and filling vertices in path at fillseed 45535 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 45535 nlabel 6346 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018401.label Connecting and filling vertices in path at fillseed 45148 Finding path...................................................................................................................................................... done Filling 45148 nlabel 4569 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018501.label Connecting and filling vertices in path at fillseed 46983 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 46983 nlabel 8432 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018601.label Connecting and filling vertices in path at fillseed 52870 Finding path.............................................................................................................................................................................................................................................................................................................. done Filling 52870 nlabel 4909 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018701.label Connecting and filling vertices in path at fillseed 48174 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 48174 nlabel 23455 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018801.label Connecting and filling vertices in path at fillseed 49541 Finding path............................................................................................................................................................................. done Filling 49541 nlabel 1307 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018901.label Connecting and filling vertices in path at fillseed 47973 Finding path...................................................................................................................................................................................................................................................................................................................................................................................... done Filling 47973 nlabel 6353 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019001.label Connecting and filling vertices in path at fillseed 48238 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 48238 nlabel 21939 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019101.label Connecting and filling vertices in path at fillseed 48655 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 48655 nlabel 8199 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019201.label Connecting and filling vertices in path at fillseed 49185 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 49185 nlabel 20739 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019301.label Connecting and filling vertices in path at fillseed 49531 Finding path.................................................................................................................... done Filling 49531 nlabel 1841 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019401.label Connecting and filling vertices in path at fillseed 47346 Finding path................................................................................................................................................................................................................................. done Filling 47346 nlabel 3692 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019501.label Connecting and filling vertices in path at fillseed 50448 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 50448 nlabel 22086 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019601.label Connecting and filling vertices in path at fillseed 50310 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 50310 nlabel 8986 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019701.label Connecting and filling vertices in path at fillseed 48971 Finding path......................................................................................................................................................................................... done Filling 48971 nlabel 6237 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019801.label Connecting and filling vertices in path at fillseed 53569 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 53569 nlabel 22315 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019901.label Connecting and filling vertices in path at fillseed 50792 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 50792 nlabel 8090 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020001.label Connecting and filling vertices in path at fillseed 46795 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 46795 nlabel 7900 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020101.label Connecting and filling vertices in path at fillseed 49820 Finding path................................................................................................................................................................................... done Filling 49820 nlabel 5358 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020201.label Connecting and filling vertices in path at fillseed 50250 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 50250 nlabel 7474 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020301.label Connecting and filling vertices in path at fillseed 55820 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 55820 nlabel 23325 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020401.label Connecting and filling vertices in path at fillseed 51585 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 51585 nlabel 22836 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020501.label Connecting and filling vertices in path at fillseed 53205 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 53205 nlabel 7321 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020601.label Connecting and filling vertices in path at fillseed 50982 Finding path......................................................................................................................................................................................... done Filling 50982 nlabel 6117 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020701.label Connecting and filling vertices in path at fillseed 51806 Finding path............................................................................................................................................... done Filling 51806 nlabel 2783 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020801.label Connecting and filling vertices in path at fillseed 56921 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 56921 nlabel 22760 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020901.label Connecting and filling vertices in path at fillseed 52592 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 52592 nlabel 23122 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021001.label Connecting and filling vertices in path at fillseed 51427 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 51427 nlabel 8297 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021101.label Connecting and filling vertices in path at fillseed 51231 Finding path......................................................................................................................................................................... done Filling 51231 nlabel 6471 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021201.label Connecting and filling vertices in path at fillseed 55775 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 55775 nlabel 20430 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021301.label Connecting and filling vertices in path at fillseed 53634 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 53634 nlabel 22232 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021401.label Connecting and filling vertices in path at fillseed 53483 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 53483 nlabel 22936 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021501.label Connecting and filling vertices in path at fillseed 53206 Finding path................................................................................................................................................................................................ done Filling 53206 nlabel 6471 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021601.label Connecting and filling vertices in path at fillseed 54581 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 54581 nlabel 24470 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021701.label Connecting and filling vertices in path at fillseed 56121 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 56121 nlabel 6943 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021801.label Connecting and filling vertices in path at fillseed 54221 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 54221 nlabel 9017 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021901.label Connecting and filling vertices in path at fillseed 53907 Finding path.................................................................................................................................................................. done Filling 53907 nlabel 2371 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022001.label Connecting and filling vertices in path at fillseed 53346 Finding path.............................................................................................................................................................................................................................. done Filling 53346 nlabel 6469 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022101.label Connecting and filling vertices in path at fillseed 57210 Finding path................................................................................................................................................................................................................................... done Filling 57210 nlabel 5556 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022201.label Connecting and filling vertices in path at fillseed 56197 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 56197 nlabel 7217 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022301.label Connecting and filling vertices in path at fillseed 55594 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 55594 nlabel 7694 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022401.label Connecting and filling vertices in path at fillseed 55289 Finding path................................................................................................................................................................. done Filling 55289 nlabel 6737 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022501.label Connecting and filling vertices in path at fillseed 57179 Finding path............................................................................................................................................................................................................................................. done Filling 57179 nlabel 4981 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022601.label Connecting and filling vertices in path at fillseed 58343 Finding path............................................................................................................................................................................................................................................................................ done Filling 58343 nlabel 6163 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022701.label Connecting and filling vertices in path at fillseed 57982 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 57982 nlabel 20155 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022801.label Connecting and filling vertices in path at fillseed 53883 Finding path.......................................................................................................................................... done Filling 53883 nlabel 1055 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022901.label Connecting and filling vertices in path at fillseed 53885 Finding path.................................................................................................................... done Filling 53885 nlabel 1721 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023001.label Connecting and filling vertices in path at fillseed 56891 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 56891 nlabel 22165 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023101.label Connecting and filling vertices in path at fillseed 57310 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 57310 nlabel 7374 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023201.label Connecting and filling vertices in path at fillseed 57638 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 57638 nlabel 6847 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023301.label Connecting and filling vertices in path at fillseed 58624 Finding path.................................................................................................................................................................................... done Filling 58624 nlabel 6625 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023401.label Connecting and filling vertices in path at fillseed 64814 Finding path...................................................................................................................................................................................................................................... done Filling 64814 nlabel 4187 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023501.label Connecting and filling vertices in path at fillseed 58400 Finding path............................................................................................................................................................................................................................................................................................................ done Filling 58400 nlabel 6686 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023601.label Connecting and filling vertices in path at fillseed 57953 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 57953 nlabel 22643 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023701.label Connecting and filling vertices in path at fillseed 57214 Finding path.................................................................................................................................................................................................................... done Filling 57214 nlabel 3502 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023801.label Connecting and filling vertices in path at fillseed 60118 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60118 nlabel 6791 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023901.label Connecting and filling vertices in path at fillseed 58355 Finding path......................................................................................................................................................................................................................................................................................................................................................... done Filling 58355 nlabel 6254 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024001.label Connecting and filling vertices in path at fillseed 64103 Finding path.............................................................................................................................................................................................................................................................................................................................................. done Filling 64103 nlabel 7314 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024101.label Connecting and filling vertices in path at fillseed 57165 Finding path............................................................................................................................................................................. done Filling 57165 nlabel 2107 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024201.label Connecting and filling vertices in path at fillseed 64813 Finding path....................................................................................................................................... done Filling 64813 nlabel 1884 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024301.label Connecting and filling vertices in path at fillseed 60256 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 60256 nlabel 19791 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024401.label Connecting and filling vertices in path at fillseed 61348 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 61348 nlabel 22802 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024501.label Connecting and filling vertices in path at fillseed 53893 Finding path......................................................................................................................................................... done Filling 53893 nlabel 1126 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024601.label Connecting and filling vertices in path at fillseed 64470 Finding path............................................................................................................................................................................................................... done Filling 64470 nlabel 6286 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024701.label Connecting and filling vertices in path at fillseed 61624 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 61624 nlabel 5468 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024801.label Connecting and filling vertices in path at fillseed 64078 Finding path...................................................................................................................................................................................................................................................................................................................................................... done Filling 64078 nlabel 6492 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024901.label Connecting and filling vertices in path at fillseed 57165 Finding path........................................................................................................................................................... done Filling 57165 nlabel 1879 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025001.label Connecting and filling vertices in path at fillseed 64470 Finding path........................................................................................................................................................................................................................................................................................................................ done Filling 64470 nlabel 5826 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025101.label Connecting and filling vertices in path at fillseed 61622 Finding path................................................................................................................................................................................................................................................ done Filling 61622 nlabel 4409 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025201.label Connecting and filling vertices in path at fillseed 64121 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 64121 nlabel 8657 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025301.label Connecting and filling vertices in path at fillseed 60987 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 60987 nlabel 10779 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025401.label Connecting and filling vertices in path at fillseed 61710 Finding path.......................................................................................................................................................................... done Filling 61710 nlabel 5238 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025501.label Connecting and filling vertices in path at fillseed 60210 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60210 nlabel 21981 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025601.label Connecting and filling vertices in path at fillseed 63918 Finding path........................................................................................................................................................................................................................................................................................................................................................................................ done Filling 63918 nlabel 5941 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025701.label Connecting and filling vertices in path at fillseed 63418 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 63418 nlabel 421 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025801.label Connecting and filling vertices in path at fillseed 60555 Finding path................................................................................................................................................................................................................... done Filling 60555 nlabel 2368 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025901.label Connecting and filling vertices in path at fillseed 64810 Finding path................................................................................................................................... done Filling 64810 nlabel 1915 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026001.label Connecting and filling vertices in path at fillseed 61624 Finding path................................................................................................................................................................................................................................................................................................................................................................ done Filling 61624 nlabel 6127 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026101.label Connecting and filling vertices in path at fillseed 64495 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 64495 nlabel 10000 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026201.label Connecting and filling vertices in path at fillseed 64215 Finding path.............................................................................................................................................................................................. done Filling 64215 nlabel 5976 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026301.label Connecting and filling vertices in path at fillseed 66469 Finding path...................................................................................................................................................... done Filling 66469 nlabel 6017 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026401.label Connecting and filling vertices in path at fillseed 65635 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 65635 nlabel 19398 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026501.label Connecting and filling vertices in path at fillseed 63481 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 63481 nlabel 123108 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026601.label Connecting and filling vertices in path at fillseed 73709 Finding path......................................................................................................................................................................... done Filling 73709 nlabel 950 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026701.label Connecting and filling vertices in path at fillseed 66351 Finding path............................................................................................................................................................................................................................................................................... done Filling 66351 nlabel 6589 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026801.label Connecting and filling vertices in path at fillseed 66717 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 66717 nlabel 18952 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026901.label Connecting and filling vertices in path at fillseed 67792 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 67792 nlabel 19185 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027001.label Connecting and filling vertices in path at fillseed 63164 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 63164 nlabel 10632 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027101.label Connecting and filling vertices in path at fillseed 72625 Finding path...................................................................................................................................................................................................................... done Filling 72625 nlabel 2060 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027201.label Connecting and filling vertices in path at fillseed 64587 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 64587 nlabel 6588 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027301.label Connecting and filling vertices in path at fillseed 65973 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 65973 nlabel 6602 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027401.label Connecting and filling vertices in path at fillseed 67217 Finding path................................................................................................................................................................................................................................................................................................................................................................................. done Filling 67217 nlabel 6262 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027501.label Connecting and filling vertices in path at fillseed 73719 Finding path........................................................................................................................................................................................................ done Filling 73719 nlabel 2054 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027601.label Connecting and filling vertices in path at fillseed 67570 Finding path.............................................................................................................................................................. done Filling 67570 nlabel 6000 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027701.label Connecting and filling vertices in path at fillseed 62725 Finding path.......................................................................................................................................................................................................................................................................................... done Filling 62725 nlabel 4250 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027801.label Connecting and filling vertices in path at fillseed 66684 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 66684 nlabel 24315 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027901.label Connecting and filling vertices in path at fillseed 73709 Finding path............................................. done Filling 73709 nlabel 670 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028001.label Connecting and filling vertices in path at fillseed 69782 Finding path....................................................................................................................................................................................................... done Filling 69782 nlabel 6154 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028101.label Connecting and filling vertices in path at fillseed 70141 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 70141 nlabel 19208 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028201.label Connecting and filling vertices in path at fillseed 73866 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 73866 nlabel 5691 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028301.label Connecting and filling vertices in path at fillseed 69953 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 69953 nlabel 10613 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028401.label Connecting and filling vertices in path at fillseed 72614 Finding path................................................................................................................................................................................... done Filling 72614 nlabel 739 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028501.label Connecting and filling vertices in path at fillseed 70097 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 70097 nlabel 16207 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028601.label Connecting and filling vertices in path at fillseed 68159 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 68159 nlabel 6822 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028701.label Connecting and filling vertices in path at fillseed 68380 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 68380 nlabel 6079 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028801.label Connecting and filling vertices in path at fillseed 73717 Finding path................................................................................................................................... done Filling 73717 nlabel 2501 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028901.label Connecting and filling vertices in path at fillseed 73195 Finding path...................................................................................................... done Filling 73195 nlabel 5833 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029001.label Connecting and filling vertices in path at fillseed 72371 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 72371 nlabel 16647 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029101.label Connecting and filling vertices in path at fillseed 67209 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 67209 nlabel 6081 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029201.label Connecting and filling vertices in path at fillseed 71145 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 71145 nlabel 10319 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029301.label Connecting and filling vertices in path at fillseed 74163 Finding path............................................................................................................................................................................................................ done Filling 74163 nlabel 6176 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029401.label Connecting and filling vertices in path at fillseed 73462 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 73462 nlabel 17049 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029501.label Connecting and filling vertices in path at fillseed 74916 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 74916 nlabel 5429 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029601.label Connecting and filling vertices in path at fillseed 74150 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 74150 nlabel 11162 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029701.label Connecting and filling vertices in path at fillseed 72779 Finding path...................................................................................................................................................................... done Filling 72779 nlabel 5029 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029801.label Connecting and filling vertices in path at fillseed 69955 Finding path................................................................................................................................................................ done Filling 69955 nlabel 6242 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029901.label Connecting and filling vertices in path at fillseed 74419 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 74419 nlabel 113178 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030001.label Connecting and filling vertices in path at fillseed 71841 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 71841 nlabel 7765 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030101.label Connecting and filling vertices in path at fillseed 75832 Finding path......................................................................................................... done Filling 75832 nlabel 2039 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030201.label Connecting and filling vertices in path at fillseed 77298 Finding path.............................................................................................................................................................................................. done Filling 77298 nlabel 6367 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030301.label Connecting and filling vertices in path at fillseed 75519 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 75519 nlabel 14554 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030401.label Connecting and filling vertices in path at fillseed 76004 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 76004 nlabel 5244 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030501.label Connecting and filling vertices in path at fillseed 75183 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 75183 nlabel 12743 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030601.label Connecting and filling vertices in path at fillseed 73855 Finding path................................................................................................................................................................................. done Filling 73855 nlabel 4740 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030701.label Connecting and filling vertices in path at fillseed 73704 Finding path......................................................................................................................................................................................................................................................................................................................................................... done Filling 73704 nlabel 4676 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030801.label Connecting and filling vertices in path at fillseed 76954 Finding path.................................................................................................................................................................................................................................................................................................................................... done Filling 76954 nlabel 5769 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030901.label Connecting and filling vertices in path at fillseed 79170 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 79170 nlabel 5900 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031001.label Connecting and filling vertices in path at fillseed 75242 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 75242 nlabel 13664 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031101.label Connecting and filling vertices in path at fillseed 74885 Finding path................................................................................................................................................................ done Filling 74885 nlabel 4976 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031201.label Connecting and filling vertices in path at fillseed 79680 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 79680 nlabel 4705 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031301.label Connecting and filling vertices in path at fillseed 78592 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 78592 nlabel 13934 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031401.label Connecting and filling vertices in path at fillseed 71840 Finding path........................................................................................................................................................................................................................................................................................................................................................................................... done Filling 71840 nlabel 8166 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031501.label Connecting and filling vertices in path at fillseed 78203 Finding path............................................................................................................................................................................................ done Filling 78203 nlabel 4951 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031601.label Connecting and filling vertices in path at fillseed 80589 Finding path.................................................................................................................................... done Filling 80589 nlabel 5453 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031701.label Connecting and filling vertices in path at fillseed 78615 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 78615 nlabel 3756 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031801.label Connecting and filling vertices in path at fillseed 78081 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 78081 nlabel 5984 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031901.label Connecting and filling vertices in path at fillseed 76302 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 76302 nlabel 12659 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032001.label Connecting and filling vertices in path at fillseed 79346 Finding path........................................................................................................................................................................................................................... done Filling 79346 nlabel 6516 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032101.label Connecting and filling vertices in path at fillseed 82893 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 82893 nlabel 5419 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032201.label Connecting and filling vertices in path at fillseed 78602 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 78602 nlabel 1461 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032301.label Connecting and filling vertices in path at fillseed 81412 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 81412 nlabel 8565 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032401.label Connecting and filling vertices in path at fillseed 77928 Finding path................................................................................ done Filling 77928 nlabel 2153 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032501.label Connecting and filling vertices in path at fillseed 80606 Finding path........................................................................................................... done Filling 80606 nlabel 5118 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032601.label Connecting and filling vertices in path at fillseed 77942 Finding path....................................................................................................................................................................... done Filling 77942 nlabel 5477 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032701.label Connecting and filling vertices in path at fillseed 79040 Finding path........................................................................................................................................................................................................................................................................................................................................................................................ done Filling 79040 nlabel 7897 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032801.label Connecting and filling vertices in path at fillseed 77297 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 77297 nlabel 10556 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032901.label Connecting and filling vertices in path at fillseed 79933 Finding path....................................................................................................................................................................... done Filling 79933 nlabel 3110 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033001.label Connecting and filling vertices in path at fillseed 82755 Finding path...................................................................................................................................................................... done Filling 82755 nlabel 5293 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033101.label Connecting and filling vertices in path at fillseed 82185 Finding path.................................................................................................................................................................................................................................................................................................................................................. done Filling 82185 nlabel 5802 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033201.label Connecting and filling vertices in path at fillseed 81391 Finding path................................................................................................................................................................................................................................................................................................................................................................................ done Filling 81391 nlabel 8301 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033301.label Connecting and filling vertices in path at fillseed 82506 Finding path.......................................................................................................................................................................................................................... done Filling 82506 nlabel 5301 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033401.label Connecting and filling vertices in path at fillseed 82676 Finding path..................................................................................................... done Filling 82676 nlabel 5182 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033501.label Connecting and filling vertices in path at fillseed 83934 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 83934 nlabel 5103 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033601.label Connecting and filling vertices in path at fillseed 83248 Finding path...................................................................................................................................................................................................................................................................................................................................................................... done Filling 83248 nlabel 7489 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033701.label Connecting and filling vertices in path at fillseed 83834 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 83834 nlabel 11233 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033801.label Connecting and filling vertices in path at fillseed 83266 Finding path.................................................................................................................................................... done Filling 83266 nlabel 4365 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033901.label Connecting and filling vertices in path at fillseed 87050 Finding path.................................................................................................................................................................................................................................................................................................................................................................. done Filling 87050 nlabel 5487 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034001.label Connecting and filling vertices in path at fillseed 128975 Finding path......................................................................................................................................................................................................................................................................................................................................................................... done Filling 128975 nlabel 5573 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034101.label Connecting and filling vertices in path at fillseed 84562 Finding path............................................................................................................................................................................................................................................................................................................. done Filling 84562 nlabel 8487 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034201.label Connecting and filling vertices in path at fillseed 79934 Finding path............................................................................................... done Filling 79934 nlabel 1615 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034301.label Connecting and filling vertices in path at fillseed 85927 Finding path........................................................................................................................................................ done Filling 85927 nlabel 4990 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034401.label Connecting and filling vertices in path at fillseed 82199 Finding path............................................................................................................................................................... done Filling 82199 nlabel 5507 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034501.label Connecting and filling vertices in path at fillseed 82380 Finding path............................................................................................................................................................................................................................................................................................................................................... done Filling 82380 nlabel 8385 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034601.label Connecting and filling vertices in path at fillseed 81618 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 81618 nlabel 11985 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034701.label Connecting and filling vertices in path at fillseed 79934 Finding path................................................................................ done Filling 79934 nlabel 2032 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034801.label Connecting and filling vertices in path at fillseed 77932 Finding path....................................................................................................................................................................................................................................... done Filling 77932 nlabel 3513 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034901.label Connecting and filling vertices in path at fillseed 84288 Finding path............................................................................................................................................................................................................................................................................................................................................................. done Filling 84288 nlabel 7021 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035001.label Connecting and filling vertices in path at fillseed 84562 Finding path.......................................................................................................................................................................................................................................................................................................................................................................... done Filling 84562 nlabel 8377 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035101.label Connecting and filling vertices in path at fillseed 85394 Finding path.......................................................................................................................................................................................................... done Filling 85394 nlabel 4371 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035201.label Connecting and filling vertices in path at fillseed 86917 Finding path............................................................................................................................... done Filling 86917 nlabel 5293 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035301.label Connecting and filling vertices in path at fillseed 78920 Finding path................................................................................................................................................................................................... done Filling 78920 nlabel 5314 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035401.label Connecting and filling vertices in path at fillseed 88529 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 88529 nlabel 9886 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035501.label Connecting and filling vertices in path at fillseed 85760 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 85760 nlabel 13818 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035601.label Connecting and filling vertices in path at fillseed 81040 Finding path................................................................................................................... done Filling 81040 nlabel 2463 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035701.label Connecting and filling vertices in path at fillseed 88999 Finding path........................................................................................................................................................................................................... done Filling 88999 nlabel 5640 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035801.label Connecting and filling vertices in path at fillseed 83221 Finding path...................................................................................................................................................................... done Filling 83221 nlabel 5418 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035901.label Connecting and filling vertices in path at fillseed 83419 Finding path.............................................................................................................................................................................................................................................................................................................. done Filling 83419 nlabel 8077 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036001.label Connecting and filling vertices in path at fillseed 79934 Finding path.......................................................................................... done Filling 79934 nlabel 1393 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036101.label Connecting and filling vertices in path at fillseed 87992 Finding path......................................................................................................................................... done Filling 87992 nlabel 5465 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036201.label Connecting and filling vertices in path at fillseed 86095 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 86095 nlabel 4546 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036301.label Connecting and filling vertices in path at fillseed 89481 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 89481 nlabel 8452 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036401.label Connecting and filling vertices in path at fillseed 88845 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 88845 nlabel 13809 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036501.label Connecting and filling vertices in path at fillseed 87408 Finding path............................................................................................................................................ done Filling 87408 nlabel 2700 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036601.label Connecting and filling vertices in path at fillseed 92922 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 92922 nlabel 5746 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036701.label Connecting and filling vertices in path at fillseed 83233 Finding path.......................................................................................................................................................................................... done Filling 83233 nlabel 4938 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036801.label Connecting and filling vertices in path at fillseed 92364 Finding path....................................................................................................................................................................................................................................................................................................................... done Filling 92364 nlabel 7907 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036901.label Connecting and filling vertices in path at fillseed 81040 Finding path...................................................... done Filling 81040 nlabel 1517 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037001.label Connecting and filling vertices in path at fillseed 90863 Finding path........................................................................................................................................................................................... done Filling 90863 nlabel 5326 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037101.label Connecting and filling vertices in path at fillseed 82156 Finding path.............................................................................................................................................................. done Filling 82156 nlabel 5479 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037201.label Connecting and filling vertices in path at fillseed 91006 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 91006 nlabel 5753 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037301.label Connecting and filling vertices in path at fillseed 89755 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 89755 nlabel 12698 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037401.label Connecting and filling vertices in path at fillseed 92317 Finding path............................................................................................................................................... done Filling 92317 nlabel 4890 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037501.label Connecting and filling vertices in path at fillseed 77932 Finding path................................................................................................................................................................................................................................................. done Filling 77932 nlabel 3420 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037601.label Connecting and filling vertices in path at fillseed 84302 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 84302 nlabel 6692 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037701.label Connecting and filling vertices in path at fillseed 88704 Finding path......................................................................................................................................................................................................................................................................................................................................................................... done Filling 88704 nlabel 8786 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037801.label Connecting and filling vertices in path at fillseed 87408 Finding path............................................................................................................................................. done Filling 87408 nlabel 2896 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037901.label Connecting and filling vertices in path at fillseed 79936 Finding path....................................................................................................................................................................................................................................................................................................................... done Filling 79936 nlabel 1530 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038001.label Connecting and filling vertices in path at fillseed 83190 Finding path............................................................................................................................................................................. done Filling 83190 nlabel 5568 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038101.label Connecting and filling vertices in path at fillseed 91935 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 91935 nlabel 9398 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038201.label Connecting and filling vertices in path at fillseed 90743 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 90743 nlabel 10671 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038301.label Connecting and filling vertices in path at fillseed 93589 Finding path...................................................................................................................................................... done Filling 93589 nlabel 4859 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038401.label Connecting and filling vertices in path at fillseed 78913 Finding path............................................................................................................................................................................................................... done Filling 78913 nlabel 4765 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038501.label Connecting and filling vertices in path at fillseed 84303 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 84303 nlabel 6478 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038601.label Connecting and filling vertices in path at fillseed 87701 Finding path....................................................................................................................................................................................................................................................................................................................... done Filling 87701 nlabel 8124 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038701.label Connecting and filling vertices in path at fillseed 94303 Finding path.................................................................................................................................................... done Filling 94303 nlabel 3989 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038801.label Connecting and filling vertices in path at fillseed 98698 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 98698 nlabel 6045 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038901.label Connecting and filling vertices in path at fillseed 98162 Finding path.................................................................................................................................................................................................................... done Filling 98162 nlabel 5439 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039001.label Connecting and filling vertices in path at fillseed 93396 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 93396 nlabel 7877 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039101.label Connecting and filling vertices in path at fillseed 81040 Finding path...................................................... done Filling 81040 nlabel 1782 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039201.label Connecting and filling vertices in path at fillseed 91812 Finding path...................................................................................................................................................................................................................................................................................... done Filling 91812 nlabel 6199 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039301.label Connecting and filling vertices in path at fillseed 94261 Finding path........................................................................................................................................................................................................ done Filling 94261 nlabel 4866 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039401.label Connecting and filling vertices in path at fillseed 93898 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 93898 nlabel 122096 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039501.label Connecting and filling vertices in path at fillseed 93877 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 93877 nlabel 119210 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039601.label Connecting and filling vertices in path at fillseed 96657 Finding path................................................................................................................................................................................................... done Filling 96657 nlabel 4989 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039701.label Connecting and filling vertices in path at fillseed 96201 Finding path....................................................................................................................................................................... done Filling 96201 nlabel 3311 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039801.label Connecting and filling vertices in path at fillseed 96014 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 96014 nlabel 125520 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039901.label Connecting and filling vertices in path at fillseed 89638 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 89638 nlabel 13326 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040001.label Connecting and filling vertices in path at fillseed 96300 Finding path........................................................................................................................................... done Filling 96300 nlabel 4192 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040101.label Connecting and filling vertices in path at fillseed 98725 Finding path................................................................................................................................................................................................................................................................................................................................................................................ done Filling 98725 nlabel 5822 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040201.label Connecting and filling vertices in path at fillseed 97933 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 97933 nlabel 126934 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040301.label Connecting and filling vertices in path at fillseed 95466 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 95466 nlabel 8432 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040401.label Connecting and filling vertices in path at fillseed 98376 Finding path................................................................................................................................................ done Filling 98376 nlabel 4860 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040501.label Connecting and filling vertices in path at fillseed 99393 Finding path............................................................................................................................................................................................................................ done Filling 99393 nlabel 4936 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040601.label Connecting and filling vertices in path at fillseed 129389 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 129389 nlabel 124418 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040701.label Connecting and filling vertices in path at fillseed 98171 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 98171 nlabel 4443 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040801.label Connecting and filling vertices in path at fillseed 97330 Finding path............................................................................................................................................................................................................................................................................................................................................................................. done Filling 97330 nlabel 7647 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040901.label Connecting and filling vertices in path at fillseed 97302 Finding path....................................................................................................................................................... done Filling 97302 nlabel 4499 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041001.label Connecting and filling vertices in path at fillseed 98725 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 98725 nlabel 6190 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041101.label Connecting and filling vertices in path at fillseed 129379 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 129379 nlabel 125221 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041201.label Connecting and filling vertices in path at fillseed 98767 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 98767 nlabel 125677 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041301.label Connecting and filling vertices in path at fillseed 94846 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 94846 nlabel 11113 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041401.label Connecting and filling vertices in path at fillseed 100483 Finding path................................................ done Filling 100483 nlabel 1551 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041501.label Connecting and filling vertices in path at fillseed 96209 Finding path........................................................................................................................................................................................................................ done Filling 96209 nlabel 3959 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041601.label Connecting and filling vertices in path at fillseed 98162 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 98162 nlabel 4309 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041701.label Connecting and filling vertices in path at fillseed 103151 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 103151 nlabel 11081 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041801.label Connecting and filling vertices in path at fillseed 100746 Finding path.............................................................................................................. done Filling 100746 nlabel 4454 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041901.label Connecting and filling vertices in path at fillseed 101807 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 101807 nlabel 4802 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042001.label Connecting and filling vertices in path at fillseed 98162 Finding path..................................................................................................................................................................................................................................................................................................................................................................................... done Filling 98162 nlabel 4538 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042101.label Connecting and filling vertices in path at fillseed 98388 Finding path............................................................................................................................................................................................................................................................................................................................................................ done Filling 98388 nlabel 8132 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042201.label Connecting and filling vertices in path at fillseed 102299 Finding path.................................................................................................................................................. done Filling 102299 nlabel 4609 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042301.label Connecting and filling vertices in path at fillseed 101753 Finding path............................................................................................................................................................................................................................................................................................................................................................................................ done Filling 101753 nlabel 7231 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042401.label Connecting and filling vertices in path at fillseed 98162 Finding path........................................................................................................................................................................................................................................................... done Filling 98162 nlabel 4098 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042501.label Connecting and filling vertices in path at fillseed 98254 Finding path........................................................................................................................................................................................................................................................................................... done Filling 98254 nlabel 7012 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042601.label Connecting and filling vertices in path at fillseed 104732 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 104732 nlabel 11349 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042701.label Connecting and filling vertices in path at fillseed 103030 Finding path......................................................................................................................................... done Filling 103030 nlabel 4888 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042801.label Connecting and filling vertices in path at fillseed 98955 Finding path................................................................................................................................................................................................................................ done Filling 98955 nlabel 3832 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042901.label Connecting and filling vertices in path at fillseed 98171 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 98171 nlabel 5269 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043001.label Connecting and filling vertices in path at fillseed 104560 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 104560 nlabel 12605 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043101.label Connecting and filling vertices in path at fillseed 102960 Finding path...................................................................................................... done Filling 102960 nlabel 4291 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043201.label Connecting and filling vertices in path at fillseed 98955 Finding path................................................................................................................................................................................................................................ done Filling 98955 nlabel 3845 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043301.label Connecting and filling vertices in path at fillseed 98202 Finding path............................................................................................................................................................................................................................................................................................................................................................................................ done Filling 98202 nlabel 9416 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043401.label Connecting and filling vertices in path at fillseed 99496 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 99496 nlabel 10499 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043501.label Connecting and filling vertices in path at fillseed 102960 Finding path........................................................................................................................ done Filling 102960 nlabel 4360 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043601.label Connecting and filling vertices in path at fillseed 106296 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 106296 nlabel 7349 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043701.label Connecting and filling vertices in path at fillseed 98162 Finding path......................................................................................................................................................................................................................................................................................................................... done Filling 98162 nlabel 4730 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043801.label Connecting and filling vertices in path at fillseed 105204 Finding path...................................................................................................................................................................................................................................... done Filling 105204 nlabel 7546 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043901.label Connecting and filling vertices in path at fillseed 102005 Finding path............................................................... done Filling 102005 nlabel 1714 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044001.label Connecting and filling vertices in path at fillseed 103240 Finding path.................................................................................................................................................................................................................................................................................................................................................................. done Filling 103240 nlabel 7223 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044101.label Connecting and filling vertices in path at fillseed 129441 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 129441 nlabel 125761 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044201.label Connecting and filling vertices in path at fillseed 129652 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 129652 nlabel 6783 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044301.label Connecting and filling vertices in path at fillseed 105372 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 105372 nlabel 9430 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044401.label Connecting and filling vertices in path at fillseed 106176 Finding path....................................................................................................................................................................................................................................................................................... done Filling 106176 nlabel 6783 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044501.label Connecting and filling vertices in path at fillseed 99750 Finding path......................................................................................................................................................................................................................... done Filling 99750 nlabel 3966 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044601.label Connecting and filling vertices in path at fillseed 98171 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 98171 nlabel 5345 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044701.label Connecting and filling vertices in path at fillseed 105262 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 105262 nlabel 10015 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044801.label Connecting and filling vertices in path at fillseed 105074 Finding path....................................................................................................................................... done Filling 105074 nlabel 4006 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044901.label Connecting and filling vertices in path at fillseed 102735 Finding path........................................................ done Filling 102735 nlabel 1529 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045001.label Connecting and filling vertices in path at fillseed 108569 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 108569 nlabel 4684 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045101.label Connecting and filling vertices in path at fillseed 102825 Finding path............................................................................................................................................................................................................................................................................................................................................................................ done Filling 102825 nlabel 9244 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045201.label Connecting and filling vertices in path at fillseed 105205 Finding path......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 105205 nlabel 7893 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045301.label Connecting and filling vertices in path at fillseed 106805 Finding path................................................................................................................................... done Filling 106805 nlabel 5365 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045401.label Connecting and filling vertices in path at fillseed 108508 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 108508 nlabel 9477 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045501.label Connecting and filling vertices in path at fillseed 105579 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 105579 nlabel 126214 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045601.label Connecting and filling vertices in path at fillseed 105871 Finding path.................................................................................................................................................................................................................................. done Filling 105871 nlabel 8634 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045701.label Connecting and filling vertices in path at fillseed 107249 Finding path................................................................................................................... done Filling 107249 nlabel 3288 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045801.label Connecting and filling vertices in path at fillseed 103513 Finding path.................................................................... done Filling 103513 nlabel 1863 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045901.label Connecting and filling vertices in path at fillseed 108570 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 108570 nlabel 5274 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046001.label Connecting and filling vertices in path at fillseed 107124 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 107124 nlabel 124991 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046101.label Connecting and filling vertices in path at fillseed 105944 Finding path....................................................................................................................................................................................................................................................................................................................................................................................... done Filling 105944 nlabel 8038 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046201.label Connecting and filling vertices in path at fillseed 104279 Finding path........................................................................................................................ done Filling 104279 nlabel 1173 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046301.label Connecting and filling vertices in path at fillseed 99759 Finding path............................................................................................................................................................................................................................................. done Filling 99759 nlabel 4809 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046401.label Connecting and filling vertices in path at fillseed 103577 Finding path....................................................................................................................................................................................................................................................................................................................... done Filling 103577 nlabel 5345 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046501.label Connecting and filling vertices in path at fillseed 107677 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 107677 nlabel 8741 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046601.label Connecting and filling vertices in path at fillseed 107953 Finding path.................................................................................................................... done Filling 107953 nlabel 2951 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046701.label Connecting and filling vertices in path at fillseed 102737 Finding path................................................................................................................ done Filling 102737 nlabel 2333 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046801.label Connecting and filling vertices in path at fillseed 107141 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 107141 nlabel 125341 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046901.label Connecting and filling vertices in path at fillseed 107674 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 107674 nlabel 9297 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047001.label Connecting and filling vertices in path at fillseed 106475 Finding path................................................................................... done Filling 106475 nlabel 2246 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047101.label Connecting and filling vertices in path at fillseed 103514 Finding path............................................................................................... done Filling 103514 nlabel 1940 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047201.label Connecting and filling vertices in path at fillseed 103532 Finding path........................................................................................................................................................................................................................................ done Filling 103532 nlabel 4743 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047301.label Connecting and filling vertices in path at fillseed 107854 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 107854 nlabel 122410 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047401.label Connecting and filling vertices in path at fillseed 107732 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 107732 nlabel 9185 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047501.label Connecting and filling vertices in path at fillseed 108097 Finding path.................................................................................................................................. done Filling 108097 nlabel 4969 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047601.label Connecting and filling vertices in path at fillseed 110968 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 110968 nlabel 10277 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047701.label Connecting and filling vertices in path at fillseed 129623 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 129623 nlabel 126962 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047801.label Connecting and filling vertices in path at fillseed 108037 Finding path................................................................................................................................................................................................................................................................................................. done Filling 108037 nlabel 7752 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047901.label Connecting and filling vertices in path at fillseed 111305 Finding path.................................................................................................................................................................................. done Filling 111305 nlabel 5321 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048001.label Connecting and filling vertices in path at fillseed 112306 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 112306 nlabel 10210 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048101.label Connecting and filling vertices in path at fillseed 108583 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 108583 nlabel 126612 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048201.label Connecting and filling vertices in path at fillseed 110819 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 110819 nlabel 9683 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048301.label Connecting and filling vertices in path at fillseed 111868 Finding path................................................................................................................................ done Filling 111868 nlabel 4330 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048401.label Connecting and filling vertices in path at fillseed 104281 Finding path......................................................................................................... done Filling 104281 nlabel 1883 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048501.label Connecting and filling vertices in path at fillseed 109255 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 109255 nlabel 125277 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048601.label Connecting and filling vertices in path at fillseed 110259 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 110259 nlabel 10084 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048701.label Connecting and filling vertices in path at fillseed 112012 Finding path.......................................................................................................................................... done Filling 112012 nlabel 5068 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048801.label Connecting and filling vertices in path at fillseed 112927 Finding path............................................................................................................................................................................................................................................................................................................................................................................... done Filling 112927 nlabel 8320 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048901.label Connecting and filling vertices in path at fillseed 105727 Finding path........................................................................................................................................................................................................................................ done Filling 105727 nlabel 4892 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049001.label Connecting and filling vertices in path at fillseed 112147 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 112147 nlabel 10455 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049101.label Connecting and filling vertices in path at fillseed 111082 Finding path............................................................................................................................................ done Filling 111082 nlabel 2812 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049201.label Connecting and filling vertices in path at fillseed 104284 Finding path..................................................................................................................... done Filling 104284 nlabel 1851 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049301.label Connecting and filling vertices in path at fillseed 105008 Finding path.......................................................................................................................................................................................................................................... done Filling 105008 nlabel 4841 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049401.label Connecting and filling vertices in path at fillseed 108719 Finding path......................................................................................................................................................................................................................................................................................................................... done Filling 108719 nlabel 7346 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049501.label Connecting and filling vertices in path at fillseed 109511 Finding path........................................................................................................................................................................................................................................................................................................................................................................... done Filling 109511 nlabel 8030 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049601.label Connecting and filling vertices in path at fillseed 113404 Finding path............................................................................................................................................................................................................................................................................ done Filling 113404 nlabel 9164 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049701.label Connecting and filling vertices in path at fillseed 105007 Finding path................................................................................................................................................................................................................................................. done Filling 105007 nlabel 2666 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049801.label Connecting and filling vertices in path at fillseed 105727 Finding path........................................................................................................................................................................................................................................ done Filling 105727 nlabel 4603 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049901.label Connecting and filling vertices in path at fillseed 114132 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 114132 nlabel 9675 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050001.label Connecting and filling vertices in path at fillseed 112093 Finding path.................................................................................................................................................................................................................................. done Filling 112093 nlabel 6043 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050101.label Connecting and filling vertices in path at fillseed 104285 Finding path.......................................................................................................................................................................................................................................................................................................... done Filling 104285 nlabel 2543 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050201.label Connecting and filling vertices in path at fillseed 105727 Finding path............................................................................................................................................................ done Filling 105727 nlabel 3729 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050301.label Connecting and filling vertices in path at fillseed 114744 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 114744 nlabel 9580 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050401.label Connecting and filling vertices in path at fillseed 108635 Finding path....................................................................................................................................... done Filling 108635 nlabel 1192 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050501.label Connecting and filling vertices in path at fillseed 114064 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 114064 nlabel 7808 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050601.label Connecting and filling vertices in path at fillseed 130215 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 130215 nlabel 8641 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050701.label Connecting and filling vertices in path at fillseed 113573 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 113573 nlabel 6140 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050801.label Connecting and filling vertices in path at fillseed 111942 Finding path................................................................................................................................................................................................................................................................................................................................................. done Filling 111942 nlabel 9331 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050901.label Connecting and filling vertices in path at fillseed 111073 Finding path............................................................................... done Filling 111073 nlabel 1632 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051001.label Connecting and filling vertices in path at fillseed 116947 Finding path......................................................................................................................................................................................................................................................................... done Filling 116947 nlabel 9716 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051101.label Connecting and filling vertices in path at fillseed 111814 Finding path................................................................................................................................................................. done Filling 111814 nlabel 3898 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051201.label Connecting and filling vertices in path at fillseed 114109 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 114109 nlabel 9767 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051301.label Connecting and filling vertices in path at fillseed 113675 Finding path............................................................................................................ done Filling 113675 nlabel 3578 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051401.label Connecting and filling vertices in path at fillseed 108643 Finding path...................................................... done Filling 108643 nlabel 1141 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051501.label Connecting and filling vertices in path at fillseed 111814 Finding path............................................................................................................................................................. done Filling 111814 nlabel 3879 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051601.label Connecting and filling vertices in path at fillseed 111917 Finding path.................................................................................................................................................................................................................................................................. done Filling 111917 nlabel 5528 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051701.label Connecting and filling vertices in path at fillseed 109851 Finding path....................................................................................... done Filling 109851 nlabel 1368 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051801.label Connecting and filling vertices in path at fillseed 111069 Finding path.................................................................................................................................... done Filling 111069 nlabel 2257 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051901.label Connecting and filling vertices in path at fillseed 111813 Finding path.......................................................................................................................................................................................................................... done Filling 111813 nlabel 3682 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052001.label Connecting and filling vertices in path at fillseed 117673 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 117673 nlabel 12250 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052101.label Connecting and filling vertices in path at fillseed 113299 Finding path............................................................................................................................................................................................................................................................................................................................. done Filling 113299 nlabel 5812 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052201.label Connecting and filling vertices in path at fillseed 116184 Finding path.................................................................................................................................................................................................................................................... done Filling 116184 nlabel 8095 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052301.label Connecting and filling vertices in path at fillseed 116280 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 116280 nlabel 8754 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052401.label Connecting and filling vertices in path at fillseed 117011 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 117011 nlabel 9415 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052501.label Connecting and filling vertices in path at fillseed 116980 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 116980 nlabel 11610 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052601.label Connecting and filling vertices in path at fillseed 111214 Finding path..................................................................................................................................................................................................................................................... done Filling 111214 nlabel 5050 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052701.label Connecting and filling vertices in path at fillseed 109295 Finding path.............................................. done Filling 109295 nlabel 1155 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052801.label Connecting and filling vertices in path at fillseed 118367 Finding path..................................................................................................................................................................................................................................................................................... done Filling 118367 nlabel 10173 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052901.label Connecting and filling vertices in path at fillseed 118987 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 118987 nlabel 9150 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053001.label Connecting and filling vertices in path at fillseed 116965 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 116965 nlabel 12304 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053101.label Connecting and filling vertices in path at fillseed 117453 Finding path................................................................................................................................................................................................................. done Filling 117453 nlabel 4878 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053201.label Connecting and filling vertices in path at fillseed 113085 Finding path......................................................... done Filling 113085 nlabel 1454 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053301.label Connecting and filling vertices in path at fillseed 112509 Finding path................................................................................................................................................ done Filling 112509 nlabel 3924 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053401.label Connecting and filling vertices in path at fillseed 112602 Finding path................................................................................................................................................................................................................................................................................................. done Filling 112602 nlabel 6129 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053501.label Connecting and filling vertices in path at fillseed 118236 Finding path.............................................................................................................................................................................................................................................................. done Filling 118236 nlabel 7974 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053601.label Connecting and filling vertices in path at fillseed 113107 Finding path........................................................................................................................................................ done Filling 113107 nlabel 3631 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053701.label Connecting and filling vertices in path at fillseed 115156 Finding path.................................................................................................................................................................................................................................................... done Filling 115156 nlabel 5594 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053801.label Connecting and filling vertices in path at fillseed 119221 Finding path................................................................................................ done Filling 119221 nlabel 4157 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053901.label Connecting and filling vertices in path at fillseed 121142 Finding path............................................................................................................................................................................................................................................ done Filling 121142 nlabel 9427 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054001.label Connecting and filling vertices in path at fillseed 114451 Finding path............................................................................................................................................................................................................................................................................................................................. done Filling 114451 nlabel 5742 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054101.label Connecting and filling vertices in path at fillseed 118164 Finding path......................................................................................................................................................................................................................................................................................................................................... done Filling 118164 nlabel 5404 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054201.label Connecting and filling vertices in path at fillseed 121131 Finding path............................................................................................................................................................................................................ done Filling 121131 nlabel 9415 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054301.label Connecting and filling vertices in path at fillseed 121081 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 121081 nlabel 7560 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054401.label Connecting and filling vertices in path at fillseed 118224 Finding path...................................................................................................................................................................................................................................................................... done Filling 118224 nlabel 8131 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054501.label Connecting and filling vertices in path at fillseed 121131 Finding path...................................................................................................................................................................................................................................................... done Filling 121131 nlabel 9352 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054601.label Connecting and filling vertices in path at fillseed 121077 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 121077 nlabel 9573 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054701.label Connecting and filling vertices in path at fillseed 120228 Finding path...................................................................................................... done Filling 120228 nlabel 3232 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054801.label Connecting and filling vertices in path at fillseed 117167 Finding path.......................................................................................................................................... done Filling 117167 nlabel 2682 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054901.label Connecting and filling vertices in path at fillseed 117986 Finding path................................................................................................................................................................................. done Filling 117986 nlabel 5907 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055001.label Connecting and filling vertices in path at fillseed 119727 Finding path.................................................................................................... done Filling 119727 nlabel 2349 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055101.label Connecting and filling vertices in path at fillseed 117167 Finding path......................................................................................................................................... done Filling 117167 nlabel 2552 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055201.label Connecting and filling vertices in path at fillseed 122082 Finding path................................................................................................................................................................................................................................................................................................................................................................................ done Filling 122082 nlabel 8884 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055301.label Connecting and filling vertices in path at fillseed 120225 Finding path.................................................................................................................. done Filling 120225 nlabel 2257 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055401.label Connecting and filling vertices in path at fillseed 117166 Finding path..................................................................................................................................................................................................... done Filling 117166 nlabel 129189 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055501.label Connecting and filling vertices in path at fillseed 122078 Finding path.................................................................................................................................................................................................................................. done Filling 122078 nlabel 8309 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055601.label Connecting and filling vertices in path at fillseed 118100 Finding path....................................................................................................................................................................................................................................................................... done Filling 118100 nlabel 5538 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055701.label Connecting and filling vertices in path at fillseed 123047 Finding path............................................................................................................................................................................................................................................................ done Filling 123047 nlabel 7686 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055801.label Connecting and filling vertices in path at fillseed 117892 Finding path......................................................................................................... done Filling 117892 nlabel 3823 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055901.label Connecting and filling vertices in path at fillseed 123107 Finding path................................................................................................................................................................................................................................................ done Filling 123107 nlabel 5693 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056001.label Connecting and filling vertices in path at fillseed 118553 Finding path................................................................................ done Filling 118553 nlabel 1129 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056101.label Connecting and filling vertices in path at fillseed 117879 Finding path......................................................... done Filling 117879 nlabel 1614 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056201.label Connecting and filling vertices in path at fillseed 123605 Finding path................................................................................................................................................................................................................................................................................................... done Filling 123605 nlabel 8199 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056301.label Connecting and filling vertices in path at fillseed 122987 Finding path........................................................................................................................................................................................................................................................................... done Filling 122987 nlabel 5389 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056401.label Connecting and filling vertices in path at fillseed 123905 Finding path.............................................................................................................. done Filling 123905 nlabel 2783 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056501.label Connecting and filling vertices in path at fillseed 117885 Finding path................................................................................................................................................................................................................................ done Filling 117885 nlabel 2883 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056601.label Connecting and filling vertices in path at fillseed 123607 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 123607 nlabel 7743 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056701.label Connecting and filling vertices in path at fillseed 118559 Finding path........................................................................................................................................................................ done Filling 118559 nlabel 702 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056801.label Connecting and filling vertices in path at fillseed 125176 Finding path......................................................................................................................................................................................................................................................................................................................................................... done Filling 125176 nlabel 9682 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056901.label Connecting and filling vertices in path at fillseed 116537 Finding path.................................................................................................................................................................................. done Filling 116537 nlabel 6092 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057001.label Connecting and filling vertices in path at fillseed 123912 Finding path........................................................................................................ done Filling 123912 nlabel 3526 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057101.label Connecting and filling vertices in path at fillseed 125174 Finding path....................................................................................................................................................................................................................................................... done Filling 125174 nlabel 7899 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057201.label Connecting and filling vertices in path at fillseed 120255 Finding path............................................................................................................................................... done Filling 120255 nlabel 5076 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057301.label Connecting and filling vertices in path at fillseed 124098 Finding path.......................................................................................................................................................................................................................................................................................... done Filling 124098 nlabel 6443 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057401.label Connecting and filling vertices in path at fillseed 124941 Finding path............................................................................................................................................................................................................................................................ done Filling 124941 nlabel 3703 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057501.label Connecting and filling vertices in path at fillseed 124672 Finding path...................................................................................................................................................................................................................................................................................................................... done Filling 124672 nlabel 8266 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057601.label Connecting and filling vertices in path at fillseed 124576 Finding path.................................................................................................................................................................................................................................................. done Filling 124576 nlabel 5557 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057701.label Connecting and filling vertices in path at fillseed 118553 Finding path..................................................................... done Filling 118553 nlabel 1401 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057801.label Connecting and filling vertices in path at fillseed 118574 Finding path...................................................................................................................................................................... done Filling 118574 nlabel 3972 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057901.label Connecting and filling vertices in path at fillseed 119843 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 119843 nlabel 5331 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058001.label Connecting and filling vertices in path at fillseed 126800 Finding path...................................................................................................................................................................................................................................................................................................................................... done Filling 126800 nlabel 7028 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058101.label Connecting and filling vertices in path at fillseed 125975 Finding path.............................................................................................................................................................................................................................................................................................................................................. done Filling 125975 nlabel 7872 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058201.label Connecting and filling vertices in path at fillseed 124019 Finding path................................................................................................................................................................................................................................................................ done Filling 124019 nlabel 4316 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058301.label Connecting and filling vertices in path at fillseed 118560 Finding path.......................................................... done Filling 118560 nlabel 1558 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058401.label Connecting and filling vertices in path at fillseed 121319 Finding path.............................................................................................................................................................. done Filling 121319 nlabel 4929 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058501.label Connecting and filling vertices in path at fillseed 125345 Finding path............................................................................................................................... done Filling 125345 nlabel 3077 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058601.label Connecting and filling vertices in path at fillseed 123359 Finding path..................................................................................................................................................................................... done Filling 123359 nlabel 1994 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058701.label Connecting and filling vertices in path at fillseed 130276 Finding path....................................................................................................................................................................................................................................................... done Filling 130276 nlabel 4864 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058801.label Connecting and filling vertices in path at fillseed 120743 Finding path................................................................ done Filling 120743 nlabel 1575 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058901.label Connecting and filling vertices in path at fillseed 117895 Finding path....................................................................................................................................................................................... done Filling 117895 nlabel 4771 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059001.label Connecting and filling vertices in path at fillseed 124494 Finding path.................................................................................................................................................................................................................................... done Filling 124494 nlabel 3788 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059101.label Connecting and filling vertices in path at fillseed 127701 Finding path............................................................................................................................................................................................................................................................................................................................................................ done Filling 127701 nlabel 6824 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059201.label Connecting and filling vertices in path at fillseed 122895 Finding path............................................................................................................................................................. done Filling 122895 nlabel 4684 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059301.label Connecting and filling vertices in path at fillseed 124860 Finding path.................................................................................................................. done Filling 124860 nlabel 2334 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059401.label Connecting and filling vertices in path at fillseed 123359 Finding path................................................................................................................................................................................. done Filling 123359 nlabel 1901 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059501.label Connecting and filling vertices in path at fillseed 123399 Finding path........................................................................................................................................................................................................................................ done Filling 123399 nlabel 4288 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059601.label Connecting and filling vertices in path at fillseed 120743 Finding path....................................................... done Filling 120743 nlabel 1287 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059701.label Connecting and filling vertices in path at fillseed 122852 Finding path............................................................................................................................................................................................... done Filling 122852 nlabel 3748 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059801.label Connecting and filling vertices in path at fillseed 124493 Finding path................................................................................................................................................................................................................................ done Filling 124493 nlabel 3774 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059901.label Connecting and filling vertices in path at fillseed 122850 Finding path....................................................... done Filling 122850 nlabel 1230 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060001.label Connecting and filling vertices in path at fillseed 123412 Finding path.......................................................................................................................................................................................................... done Filling 123412 nlabel 4216 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060101.label Connecting and filling vertices in path at fillseed 124861 Finding path........................................................................ done Filling 124861 nlabel 1348 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060201.label Connecting and filling vertices in path at fillseed 123361 Finding path....................................................................... done Filling 123361 nlabel 1123 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060301.label Connecting and filling vertices in path at fillseed 123398 Finding path...................................................................................................................................................................................... done Filling 123398 nlabel 4158 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060401.label Connecting and filling vertices in path at fillseed 127238 Finding path................................................................................................................................................................................... done Filling 127238 nlabel 2512 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060501.label Connecting and filling vertices in path at fillseed 123358 Finding path............................................................................ done Filling 123358 nlabel 1553 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060601.label Connecting and filling vertices in path at fillseed 123398 Finding path..................................................................................................................................................................... done Filling 123398 nlabel 4184 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060701.label Connecting and filling vertices in path at fillseed 125348 Finding path............................................................................... done Filling 125348 nlabel 1439 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060801.label Connecting and filling vertices in path at fillseed 126262 Finding path................................................................................................................................................................... done Filling 126262 nlabel 2898 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060901.label Connecting and filling vertices in path at fillseed 125970 Finding path................................................................................................................................................................................... done Filling 125970 nlabel 3124 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061001.label Connecting and filling vertices in path at fillseed 127843 Finding path............................................................................................................................................................................. done Filling 127843 nlabel 2475 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061101.label Connecting and filling vertices in path at fillseed 126262 Finding path.................................................................................................................................................................... done Filling 126262 nlabel 3051 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061201.label Connecting and filling vertices in path at fillseed 126972 Finding path................................................................................................................................................................................. done Filling 126972 nlabel 3629 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061301.label Connecting and filling vertices in path at fillseed 127837 Finding path............................................................................................................................................ done Filling 127837 nlabel 3261 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061401.label Connecting and filling vertices in path at fillseed 125832 Finding path........................................................................... done Filling 125832 nlabel 1392 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061501.label Connecting and filling vertices in path at fillseed 124901 Finding path........................................................................................................................................... done Filling 124901 nlabel 3230 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061601.label Connecting and filling vertices in path at fillseed 128258 Finding path...................................................................................................................................................................................................................................... done Filling 128258 nlabel 2456 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061701.label Connecting and filling vertices in path at fillseed 126266 Finding path........................................................................................................................................ done Filling 126266 nlabel 3272 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061801.label Connecting and filling vertices in path at fillseed 125827 Finding path......................................................................... done Filling 125827 nlabel 1613 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061901.label Connecting and filling vertices in path at fillseed 126265 Finding path.................................................................................................................................................... done Filling 126265 nlabel 2044 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062001.label Connecting and filling vertices in path at fillseed 126972 Finding path..................................................................................................................................................... done Filling 126972 nlabel 3101 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062101.label Connecting and filling vertices in path at fillseed 128405 Finding path........................................................................................................................................................................................................................................................ done Filling 128405 nlabel 1680 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062201.label Connecting and filling vertices in path at fillseed 127540 Finding path.......................................................................................................................................................... done Filling 127540 nlabel 3079 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062301.label Connecting and filling vertices in path at fillseed 126635 Finding path....................................................................... done Filling 126635 nlabel 1536 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062401.label Connecting and filling vertices in path at fillseed 126629 Finding path...................................................................................................................................................... done Filling 126629 nlabel 2130 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062501.label Connecting and filling vertices in path at fillseed 127834 Finding path....................................................................................... done Filling 127834 nlabel 1683 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062601.label Connecting and filling vertices in path at fillseed 126636 Finding path.................................................................................... done Filling 126636 nlabel 1970 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062701.label Connecting and filling vertices in path at fillseed 127551 Finding path............................................................................................................................................................................................... done Filling 127551 nlabel 2557 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062801.label Connecting and filling vertices in path at fillseed 127834 Finding path........................................................................................... done Filling 127834 nlabel 1558 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062901.label Connecting and filling vertices in path at fillseed 128063 Finding path.......................................................................................................................................................... done Filling 128063 nlabel 2279 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.063001.label Connecting and filling vertices in path at fillseed 128073 Finding path.................................................................................................................................................. done Filling 128073 nlabel 2543 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.063101.label ================= compute_lgi('lh.pial','lh.pial-outer-smoothed','/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc',100,25,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial'); exit ================= 2015-12-16 10:51:50.323 MATLAB_maci64[56776:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> loading datas ... FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.02 sec) FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.05 sec) preparing outer mesh structure ... face 5000 / 126272 face 10000 / 126272 face 15000 / 126272 face 20000 / 126272 face 25000 / 126272 face 30000 / 126272 face 35000 / 126272 face 40000 / 126272 face 45000 / 126272 face 50000 / 126272 face 55000 / 126272 face 60000 / 126272 face 65000 / 126272 face 70000 / 126272 face 75000 / 126272 face 80000 / 126272 face 85000 / 126272 face 90000 / 126272 face 95000 / 126272 face 100000 / 126272 face 105000 / 126272 face 110000 / 126272 face 115000 / 126272 face 120000 / 126272 face 125000 / 126272 reading normals info ... mesh_outer = vertices: [63138x3 double] faces: [126272x3 double] facesOfVertex: [63138x1 struct] vertexNormal: [63138x3 double] preparing pial mesh structure ... face 5000 / 260558 face 10000 / 260558 face 15000 / 260558 face 20000 / 260558 face 25000 / 260558 face 30000 / 260558 face 35000 / 260558 face 40000 / 260558 face 45000 / 260558 face 50000 / 260558 face 55000 / 260558 face 60000 / 260558 face 65000 / 260558 face 70000 / 260558 face 75000 / 260558 face 80000 / 260558 face 85000 / 260558 face 90000 / 260558 face 95000 / 260558 face 100000 / 260558 face 105000 / 260558 face 110000 / 260558 face 115000 / 260558 face 120000 / 260558 face 125000 / 260558 face 130000 / 260558 face 135000 / 260558 face 140000 / 260558 face 145000 / 260558 face 150000 / 260558 face 155000 / 260558 face 160000 / 260558 face 165000 / 260558 face 170000 / 260558 face 175000 / 260558 face 180000 / 260558 face 185000 / 260558 face 190000 / 260558 face 195000 / 260558 face 200000 / 260558 face 205000 / 260558 face 210000 / 260558 face 215000 / 260558 face 220000 / 260558 face 225000 / 260558 face 230000 / 260558 face 235000 / 260558 face 240000 / 260558 face 245000 / 260558 face 250000 / 260558 face 255000 / 260558 face 260000 / 260558 mesh_total = vertices: [130281x3 double] faces: [260558x3 double] facesOfVertex: [130281x1 struct] ...searching for mesh edges...done (188.25 sec). loading outer area information... lGI for vertex number 1 of the outer mesh is 3.4265 ratio saved at 1 lGI for vertex number 101 of the outer mesh is 3.2073 lGI for vertex number 201 of the outer mesh is 4.986 lGI for vertex number 301 of the outer mesh is 3.1876 lGI for vertex number 401 of the outer mesh is 3.2624 lGI for vertex number 501 of the outer mesh is 2.8292 lGI for vertex number 601 of the outer mesh is 3.1087 lGI for vertex number 701 of the outer mesh is 2.926 lGI for vertex number 801 of the outer mesh is 2.7614 lGI for vertex number 901 of the outer mesh is 4.8203 lGI for vertex number 1001 of the outer mesh is 2.9556 lGI for vertex number 1101 of the outer mesh is 2.9166 lGI for vertex number 1201 of the outer mesh is 2.6207 lGI for vertex number 1301 of the outer mesh is 2.7911 lGI for vertex number 1401 of the outer mesh is 3.1397 lGI for vertex number 1501 of the outer mesh is 3.3045 lGI for vertex number 1601 of the outer mesh is 2.0337 lGI for vertex number 1701 of the outer mesh is 4.6479 lGI for vertex number 1801 of the outer mesh is 1.9381 lGI for vertex number 1901 of the outer mesh is 1.6463 lGI for vertex number 2001 of the outer mesh is 2.6831 lGI for vertex number 2101 of the outer mesh is 3.0632 lGI for vertex number 2201 of the outer mesh is 4.8638 lGI for vertex number 2301 of the outer mesh is 2.6845 lGI for vertex number 2401 of the outer mesh is 4.5519 lGI for vertex number 2501 of the outer mesh is 4.6766 lGI for vertex number 2601 of the outer mesh is 4.8692 lGI for vertex number 2701 of the outer mesh is 1.8941 lGI for vertex number 2801 of the outer mesh is 2.8432 lGI for vertex number 2901 of the outer mesh is 3.0069 lGI for vertex number 3001 of the outer mesh is 4.661 lGI for vertex number 3101 of the outer mesh is 1.3378 lGI for vertex number 3201 of the outer mesh is 4.615 lGI for vertex number 3301 of the outer mesh is 2.7965 lGI for vertex number 3401 of the outer mesh is 1.9482 lGI for vertex number 3501 of the outer mesh is 1.3474 lGI for vertex number 3601 of the outer mesh is 4.6398 lGI for vertex number 3701 of the outer mesh is 2.6749 lGI for vertex number 3801 of the outer mesh is 3.0692 lGI for vertex number 3901 of the outer mesh is 2.5194 lGI for vertex number 4001 of the outer mesh is 1.3656 lGI for vertex number 4101 of the outer mesh is 5.1978 lGI for vertex number 4201 of the outer mesh is 4.915 lGI for vertex number 4301 of the outer mesh is 3.0989 lGI for vertex number 4401 of the outer mesh is 4.4463 lGI for vertex number 4501 of the outer mesh is 5.27 lGI for vertex number 4601 of the outer mesh is 2.3228 lGI for vertex number 4701 of the outer mesh is 3.3402 lGI for vertex number 4801 of the outer mesh is 3.1444 lGI for vertex number 4901 of the outer mesh is 2.9833 lGI for vertex number 5001 of the outer mesh is 1.3857 lGI for vertex number 5101 of the outer mesh is 2.5599 lGI for vertex number 5201 of the outer mesh is 3.1353 lGI for vertex number 5301 of the outer mesh is 2.4465 lGI for vertex number 5401 of the outer mesh is 4.7781 lGI for vertex number 5501 of the outer mesh is 2.249 lGI for vertex number 5601 of the outer mesh is 3.277 lGI for vertex number 5701 of the outer mesh is 1.287 lGI for vertex number 5801 of the outer mesh is 4.7969 lGI for vertex number 5901 of the outer mesh is 2.2568 lGI for vertex number 6001 of the outer mesh is 3.565 lGI for vertex number 6101 of the outer mesh is 2.8227 lGI for vertex number 6201 of the outer mesh is 2.0818 lGI for vertex number 6301 of the outer mesh is 1.2497 lGI for vertex number 6401 of the outer mesh is 2.3922 lGI for vertex number 6501 of the outer mesh is 2.9461 lGI for vertex number 6601 of the outer mesh is 2.0095 lGI for vertex number 6701 of the outer mesh is 4.7177 lGI for vertex number 6801 of the outer mesh is 1.7692 lGI for vertex number 6901 of the outer mesh is 5.1111 lGI for vertex number 7001 of the outer mesh is 3.569 lGI for vertex number 7101 of the outer mesh is 2.8169 lGI for vertex number 7201 of the outer mesh is 5.0145 lGI for vertex number 7301 of the outer mesh is 2.6026 lGI for vertex number 7401 of the outer mesh is 2.8775 lGI for vertex number 7501 of the outer mesh is 2.2873 lGI for vertex number 7601 of the outer mesh is 1.2081 lGI for vertex number 7701 of the outer mesh is 2.6635 lGI for vertex number 7801 of the outer mesh is 2.7112 lGI for vertex number 7901 of the outer mesh is 2.7058 lGI for vertex number 8001 of the outer mesh is 1.3407 lGI for vertex number 8101 of the outer mesh is 6.1121 lGI for vertex number 8201 of the outer mesh is 2.9094 lGI for vertex number 8301 of the outer mesh is 2.7497 lGI for vertex number 8401 of the outer mesh is 5.0902 lGI for vertex number 8501 of the outer mesh is 5.7225 lGI for vertex number 8601 of the outer mesh is 2.754 lGI for vertex number 8701 of the outer mesh is 2.222 lGI for vertex number 8801 of the outer mesh is 5.3176 lGI for vertex number 8901 of the outer mesh is 5.2661 lGI for vertex number 9001 of the outer mesh is 4.0711 lGI for vertex number 9101 of the outer mesh is 2.9053 lGI for vertex number 9201 of the outer mesh is 2.4753 lGI for vertex number 9301 of the outer mesh is 1.3405 lGI for vertex number 9401 of the outer mesh is 2.5057 lGI for vertex number 9501 of the outer mesh is 2.6684 lGI for vertex number 9601 of the outer mesh is 1.9377 lGI for vertex number 9701 of the outer mesh is 5.4524 lGI for vertex number 9801 of the outer mesh is 5.0129 lGI for vertex number 9901 of the outer mesh is 4.1696 lGI for vertex number 10001 of the outer mesh is 3.2315 ratio saved at 10001 lGI for vertex number 10101 of the outer mesh is 2.4603 lGI for vertex number 10201 of the outer mesh is 0.84552 lGI for vertex number 10301 of the outer mesh is 2.1396 lGI for vertex number 10401 of the outer mesh is 2.9253 lGI for vertex number 10501 of the outer mesh is 1.5329 lGI for vertex number 10601 of the outer mesh is 1.1233 lGI for vertex number 10701 of the outer mesh is 1.0908 lGI for vertex number 10801 of the outer mesh is 2.589 lGI for vertex number 10901 of the outer mesh is 2.7878 lGI for vertex number 11001 of the outer mesh is 2.8317 lGI for vertex number 11101 of the outer mesh is 0.85972 lGI for vertex number 11201 of the outer mesh is 1.9847 lGI for vertex number 11301 of the outer mesh is 2.6617 lGI for vertex number 11401 of the outer mesh is 1.257 lGI for vertex number 11501 of the outer mesh is 0.91877 lGI for vertex number 11601 of the outer mesh is 1.1677 lGI for vertex number 11701 of the outer mesh is 2.8007 lGI for vertex number 11801 of the outer mesh is 2.6598 lGI for vertex number 11901 of the outer mesh is 2.4148 lGI for vertex number 12001 of the outer mesh is 1.1911 lGI for vertex number 12101 of the outer mesh is 1.9881 lGI for vertex number 12201 of the outer mesh is 2.9332 lGI for vertex number 12301 of the outer mesh is 2.1214 lGI for vertex number 12401 of the outer mesh is 4.8392 lGI for vertex number 12501 of the outer mesh is 1.4856 lGI for vertex number 12601 of the outer mesh is 2.6296 lGI for vertex number 12701 of the outer mesh is 2.4877 lGI for vertex number 12801 of the outer mesh is 2.744 lGI for vertex number 12901 of the outer mesh is 4.5492 lGI for vertex number 13001 of the outer mesh is 2.2269 lGI for vertex number 13101 of the outer mesh is 8.5164 lGI for vertex number 13201 of the outer mesh is 2.5289 lGI for vertex number 13301 of the outer mesh is 4.9887 lGI for vertex number 13401 of the outer mesh is 1.425 ... remeasuring lGI value for vertex iV = 13501. It may take a few minutes. WARNING -- Problem for vertex iV = 13501, lGI value is aberrantly high (lGI=33.3847)... ...lGI computation will be stopped. This may be caused by topological defects, check mris_euler_number on the pial surface. ERROR: compute_lgi did not create output file '/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial_lgi.asc'! Darwin MacBook-Pro-di-Marco.local 13.3.0 Darwin Kernel Version 13.3.0: Tue Jun 3 21:27:35 PDT 2014; root:xnu-2422.110.17~1/RELEASE_X86_64 x86_64 recon-all -s T40_OM_Post exited with ERRORS at Wed Dec 16 11:03:34 EET 2015 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting \n\n New invocation of recon-all \n\n Fri Dec 18 14:26:08 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post /Applications/freesurfer/bin/recon-all -sd /Users/marco/Documents/T1s/pipelineT1/subjects -s T40_OM_Post -localGI subjid T40_OM_Post setenv SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Actual FREESURFER_HOME /Applications/freesurfer build-stamp.txt: freesurfer-Darwin-lion-stable-pub-v5.3.0 Darwin MacBook-Pro-di-Marco.local 13.3.0 Darwin Kernel Version 13.3.0: Tue Jun 3 21:27:35 PDT 2014; root:xnu-2422.110.17~1/RELEASE_X86_64 x86_64 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 709 PhysMem: 5856M used (1368M wired), 31M unused. ######################################## program versions used $Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 nicks Exp $ $Id: mri_motion_correct.fsl,v 1.14 2011/03/02 20:16:39 nicks Exp $ mri_convert -all-info ProgramName: mri_convert ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:10-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 FLIRT version 5.5 $Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks Exp $ mri_convert --version stable5 ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:10-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 Program nu_correct, built from: Package MNI N3, version 1.10, compiled by nicks@aspasia.local (i686-apple-darwin10.2.0) on 2010-02-26 at 14:19:30 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:11-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:12-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_normalize.c,v 1.73.2.1 2012/10/17 19:11:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:13-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_watershed.cpp,v 1.96.2.1 2011/11/08 22:18:44 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:14-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:15-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_segment.c,v 1.40 2011/03/02 00:04:24 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_label2label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:15-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_label2label.c,v 1.40.2.2 2013/04/02 16:26:15 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:16-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_em_register.c,v 1.84.2.3 2013/02/09 00:49:26 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:16-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_normalize.c,v 1.52.2.2 2012/10/17 19:11:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:16-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_register.c,v 1.78.2.3 2013/02/09 00:42:20 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:16-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_label.c,v 1.96.2.1 2012/08/28 22:11:20 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:16-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_pretess.c,v 1.20 2011/03/02 00:04:23 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:17-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_fill.c,v 1.118 2011/03/16 21:23:49 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:17-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_concatenate_lta ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:17-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_concatenate_lta.c,v 1.10 2011/03/16 21:23:48 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:17-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:17-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_smooth.c,v 1.28 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:18-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_inflate.c,v 1.43 2011/03/02 00:04:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:18-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:18-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:18-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_euler_number.c,v 1.8.2.2 2013/01/14 22:40:07 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_volmask.cpp,v 1.25 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:20-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_anatomical_stats.c,v 1.72 2011/03/02 00:04:26 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:20-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mrisp_paint.c,v 1.11 2011/03/02 00:04:35 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:20-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_curvature_stats.c,v 1.64 2011/03/02 00:04:30 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:20-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_calc.c,v 1.37.2.8 2013/01/28 17:05:17 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ ProgramName: mri_robust_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:20-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:20-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_or.c,v 1.3 2011/03/02 00:04:13 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/18-12:26:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ####################################### GCADIR /Applications/freesurfer/average GCA RB_all_2008-03-26.gca GCASkull RB_all_withskull_2008-03-26.gca AvgCurvTif average.curvature.filled.buckner40.tif GCSDIR /Applications/freesurfer/average GCS curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ####################################### INFO: current FREESURFER_HOME does not match that of previous processing. Current: /Applications/freesurfer Previous: /cdrom/Marco/freesurfer /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf #-------------------------------------------- #@# Local Gyrification Index lh Fri Dec 18 14:26:23 EET 2015 \n mris_compute_lgi --i lh.pial \n ================= rm -Rf /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial ================= ================= mkdir -p /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial ================= ================= mris_fill -c -r 1 lh.pial /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz ================= reading surface from lh.pial... writing filled volume to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz... conforming output volume setting resolution for intermediate calculations to 1.0000 ================= make_outer_surface('/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz',15,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer'); exit ================= 2015-12-18 14:26:34.439 MATLAB_maci64[90629:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> reading filled volume... closing volume... morphological closing done. writing outer surface... ================= mris_extract_main_component /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-main ================= counting number of connected components... 63138 voxel in cpt #1: X=2 [v=63138,e=189408,f=126272] located at (-23.055841, -12.147598, 24.207567) For the whole surface: X=2 [v=63138,e=189408,f=126272] One single component has been found nothing to do done ================= mris_smooth -nw -n 30 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-main ./lh.pial-outer-smoothed ================= smoothing for 30 iterations smoothing surface tessellation for 30 iterations... smoothing complete - recomputing first and second fundamental forms... ================= mris_euler_number ./lh.pial-outer-smoothed ================= euler # = v-e+f = 2g-2: 63138 - 189408 + 126272 = 2 --> 0 holes F =2V-4: 126272 = 126276-4 (0) 2E=3F: 378816 = 378816 (0) total defect index = 0 ================= mris_convert -n lh.pial-outer-smoothed /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc ================= ================= find_corresponding_center_FSformat('lh.pial','lh.pial-outer-smoothed',100,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial','/tmp/mrc_90614_.m'); exit ================= 2015-12-18 14:27:46.969 MATLAB_maci64[90701:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.22 sec) FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) deltaT = 4.3300 ================= make_roi_paths('lh.pial','lh.pial-outer-smoothed',25,100,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial','/tmp/mrp_90614_.m'); exit ================= 2015-12-18 14:28:07.694 MATLAB_maci64[90756:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> loading datas ... FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.09 sec) FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) preparing outer mesh structure ... face 5000 / 126272 face 10000 / 126272 face 15000 / 126272 face 20000 / 126272 face 25000 / 126272 face 30000 / 126272 face 35000 / 126272 face 40000 / 126272 face 45000 / 126272 face 50000 / 126272 face 55000 / 126272 face 60000 / 126272 face 65000 / 126272 face 70000 / 126272 face 75000 / 126272 face 80000 / 126272 face 85000 / 126272 face 90000 / 126272 face 95000 / 126272 face 100000 / 126272 face 105000 / 126272 face 110000 / 126272 face 115000 / 126272 face 120000 / 126272 face 125000 / 126272 mesh_outer = vertices: [63138x3 double] faces: [126272x3 double] facesOfVertex: [63138x1 struct] preparing pial mesh structure ... ...searching for mesh edges...done (198.01 sec). ... creating path file for vertex 1 / 63138 area file for outer ROIs saved at 1 ... creating path file for vertex 101 / 63138 ... creating path file for vertex 201 / 63138 ... creating path file for vertex 301 / 63138 ... creating path file for vertex 401 / 63138 ... creating path file for vertex 501 / 63138 ... creating path file for vertex 601 / 63138 ... creating path file for vertex 701 / 63138 ... creating path file for vertex 801 / 63138 ... creating path file for vertex 901 / 63138 ... creating path file for vertex 1001 / 63138 ... creating path file for vertex 1101 / 63138 ... creating path file for vertex 1201 / 63138 ... creating path file for vertex 1301 / 63138 ... creating path file for vertex 1401 / 63138 ... creating path file for vertex 1501 / 63138 ... creating path file for vertex 1601 / 63138 ... creating path file for vertex 1701 / 63138 ... creating path file for vertex 1801 / 63138 ... creating path file for vertex 1901 / 63138 ... creating path file for vertex 2001 / 63138 ... creating path file for vertex 2101 / 63138 ... creating path file for vertex 2201 / 63138 ... creating path file for vertex 2301 / 63138 ... creating path file for vertex 2401 / 63138 ... creating path file for vertex 2501 / 63138 ... creating path file for vertex 2601 / 63138 ... creating path file for vertex 2701 / 63138 ... creating path file for vertex 2801 / 63138 ... creating path file for vertex 2901 / 63138 ... creating path file for vertex 3001 / 63138 ... creating path file for vertex 3101 / 63138 ... creating path file for vertex 3201 / 63138 ... creating path file for vertex 3301 / 63138 ... creating path file for vertex 3401 / 63138 ... creating path file for vertex 3501 / 63138 ... creating path file for vertex 3601 / 63138 ... creating path file for vertex 3701 / 63138 ... creating path file for vertex 3801 / 63138 ... creating path file for vertex 3901 / 63138 ... creating path file for vertex 4001 / 63138 ... creating path file for vertex 4101 / 63138 ... creating path file for vertex 4201 / 63138 ... creating path file for vertex 4301 / 63138 ... creating path file for vertex 4401 / 63138 ... creating path file for vertex 4501 / 63138 ... creating path file for vertex 4601 / 63138 ... creating path file for vertex 4701 / 63138 ... creating path file for vertex 4801 / 63138 ... creating path file for vertex 4901 / 63138 ... creating path file for vertex 5001 / 63138 area file for outer ROIs saved at 5001 ... creating path file for vertex 5101 / 63138 ... creating path file for vertex 5201 / 63138 ... creating path file for vertex 5301 / 63138 ... creating path file for vertex 5401 / 63138 ... creating path file for vertex 5501 / 63138 ... creating path file for vertex 5601 / 63138 ... creating path file for vertex 5701 / 63138 ... creating path file for vertex 5801 / 63138 ... creating path file for vertex 5901 / 63138 ... creating path file for vertex 6001 / 63138 ... creating path file for vertex 6101 / 63138 ... creating path file for vertex 6201 / 63138 ... creating path file for vertex 6301 / 63138 ... creating path file for vertex 6401 / 63138 ... creating path file for vertex 6501 / 63138 ... creating path file for vertex 6601 / 63138 ... creating path file for vertex 6701 / 63138 ... creating path file for vertex 6801 / 63138 ... creating path file for vertex 6901 / 63138 ... creating path file for vertex 7001 / 63138 ... creating path file for vertex 7101 / 63138 ... creating path file for vertex 7201 / 63138 ... creating path file for vertex 7301 / 63138 ... creating path file for vertex 7401 / 63138 ... creating path file for vertex 7501 / 63138 ... creating path file for vertex 7601 / 63138 ... creating path file for vertex 7701 / 63138 ... creating path file for vertex 7801 / 63138 ... creating path file for vertex 7901 / 63138 ... creating path file for vertex 8001 / 63138 ... creating path file for vertex 8101 / 63138 ... creating path file for vertex 8201 / 63138 ... creating path file for vertex 8301 / 63138 ... creating path file for vertex 8401 / 63138 ... creating path file for vertex 8501 / 63138 ... creating path file for vertex 8601 / 63138 ... creating path file for vertex 8701 / 63138 ... creating path file for vertex 8801 / 63138 ... creating path file for vertex 8901 / 63138 ... creating path file for vertex 9001 / 63138 ... creating path file for vertex 9101 / 63138 ... creating path file for vertex 9201 / 63138 ... creating path file for vertex 9301 / 63138 ... creating path file for vertex 9401 / 63138 ... creating path file for vertex 9501 / 63138 ... creating path file for vertex 9601 / 63138 ... creating path file for vertex 9701 / 63138 ... creating path file for vertex 9801 / 63138 ... creating path file for vertex 9901 / 63138 ... creating path file for vertex 10001 / 63138 area file for outer ROIs saved at 10001 ... creating path file for vertex 10101 / 63138 ... creating path file for vertex 10201 / 63138 ... creating path file for vertex 10301 / 63138 ... creating path file for vertex 10401 / 63138 ... creating path file for vertex 10501 / 63138 ... creating path file for vertex 10601 / 63138 ... creating path file for vertex 10701 / 63138 ... creating path file for vertex 10801 / 63138 ... creating path file for vertex 10901 / 63138 ... creating path file for vertex 11001 / 63138 ... creating path file for vertex 11101 / 63138 ... creating path file for vertex 11201 / 63138 ... creating path file for vertex 11301 / 63138 ... creating path file for vertex 11401 / 63138 ... creating path file for vertex 11501 / 63138 ... creating path file for vertex 11601 / 63138 ... creating path file for vertex 11701 / 63138 ... creating path file for vertex 11801 / 63138 ... creating path file for vertex 11901 / 63138 ... creating path file for vertex 12001 / 63138 ... creating path file for vertex 12101 / 63138 ... creating path file for vertex 12201 / 63138 ... creating path file for vertex 12301 / 63138 ... creating path file for vertex 12401 / 63138 ... creating path file for vertex 12501 / 63138 ... creating path file for vertex 12601 / 63138 ... creating path file for vertex 12701 / 63138 ... creating path file for vertex 12801 / 63138 ... creating path file for vertex 12901 / 63138 ... creating path file for vertex 13001 / 63138 ... creating path file for vertex 13101 / 63138 ... creating path file for vertex 13201 / 63138 ... creating path file for vertex 13301 / 63138 ... creating path file for vertex 13401 / 63138 ... creating path file for vertex 13501 / 63138 ... creating path file for vertex 13601 / 63138 ... creating path file for vertex 13701 / 63138 ... creating path file for vertex 13801 / 63138 ... creating path file for vertex 13901 / 63138 ... creating path file for vertex 14001 / 63138 ... creating path file for vertex 14101 / 63138 ... creating path file for vertex 14201 / 63138 ... creating path file for vertex 14301 / 63138 ... creating path file for vertex 14401 / 63138 ... creating path file for vertex 14501 / 63138 ... creating path file for vertex 14601 / 63138 ... creating path file for vertex 14701 / 63138 ... creating path file for vertex 14801 / 63138 ... creating path file for vertex 14901 / 63138 ... creating path file for vertex 15001 / 63138 area file for outer ROIs saved at 15001 ... creating path file for vertex 15101 / 63138 ... creating path file for vertex 15201 / 63138 ... creating path file for vertex 15301 / 63138 ... creating path file for vertex 15401 / 63138 ... creating path file for vertex 15501 / 63138 ... creating path file for vertex 15601 / 63138 ... creating path file for vertex 15701 / 63138 ... creating path file for vertex 15801 / 63138 ... creating path file for vertex 15901 / 63138 ... creating path file for vertex 16001 / 63138 ... creating path file for vertex 16101 / 63138 ... creating path file for vertex 16201 / 63138 ... creating path file for vertex 16301 / 63138 ... creating path file for vertex 16401 / 63138 ... creating path file for vertex 16501 / 63138 ... creating path file for vertex 16601 / 63138 ... creating path file for vertex 16701 / 63138 ... creating path file for vertex 16801 / 63138 ... creating path file for vertex 16901 / 63138 ... creating path file for vertex 17001 / 63138 ... creating path file for vertex 17101 / 63138 ... creating path file for vertex 17201 / 63138 ... creating path file for vertex 17301 / 63138 ... creating path file for vertex 17401 / 63138 ... creating path file for vertex 17501 / 63138 ... creating path file for vertex 17601 / 63138 ... creating path file for vertex 17701 / 63138 ... creating path file for vertex 17801 / 63138 ... creating path file for vertex 17901 / 63138 ... creating path file for vertex 18001 / 63138 ... creating path file for vertex 18101 / 63138 ... creating path file for vertex 18201 / 63138 ... creating path file for vertex 18301 / 63138 ... creating path file for vertex 18401 / 63138 ... creating path file for vertex 18501 / 63138 ... creating path file for vertex 18601 / 63138 ... creating path file for vertex 18701 / 63138 ... creating path file for vertex 18801 / 63138 ... creating path file for vertex 18901 / 63138 ... creating path file for vertex 19001 / 63138 ... creating path file for vertex 19101 / 63138 ... creating path file for vertex 19201 / 63138 ... creating path file for vertex 19301 / 63138 ... creating path file for vertex 19401 / 63138 ... creating path file for vertex 19501 / 63138 ... creating path file for vertex 19601 / 63138 ... creating path file for vertex 19701 / 63138 ... creating path file for vertex 19801 / 63138 ... creating path file for vertex 19901 / 63138 ... creating path file for vertex 20001 / 63138 area file for outer ROIs saved at 20001 ... creating path file for vertex 20101 / 63138 ... creating path file for vertex 20201 / 63138 ... creating path file for vertex 20301 / 63138 ... creating path file for vertex 20401 / 63138 ... creating path file for vertex 20501 / 63138 ... creating path file for vertex 20601 / 63138 ... creating path file for vertex 20701 / 63138 ... creating path file for vertex 20801 / 63138 ... creating path file for vertex 20901 / 63138 ... creating path file for vertex 21001 / 63138 ... creating path file for vertex 21101 / 63138 ... creating path file for vertex 21201 / 63138 ... creating path file for vertex 21301 / 63138 ... creating path file for vertex 21401 / 63138 ... creating path file for vertex 21501 / 63138 ... creating path file for vertex 21601 / 63138 ... creating path file for vertex 21701 / 63138 ... creating path file for vertex 21801 / 63138 ... creating path file for vertex 21901 / 63138 ... creating path file for vertex 22001 / 63138 ... creating path file for vertex 22101 / 63138 ... creating path file for vertex 22201 / 63138 ... creating path file for vertex 22301 / 63138 ... creating path file for vertex 22401 / 63138 ... creating path file for vertex 22501 / 63138 ... creating path file for vertex 22601 / 63138 ... creating path file for vertex 22701 / 63138 ... creating path file for vertex 22801 / 63138 ... creating path file for vertex 22901 / 63138 ... creating path file for vertex 23001 / 63138 ... creating path file for vertex 23101 / 63138 ... creating path file for vertex 23201 / 63138 ... creating path file for vertex 23301 / 63138 ... creating path file for vertex 23401 / 63138 ... creating path file for vertex 23501 / 63138 ... creating path file for vertex 23601 / 63138 ... creating path file for vertex 23701 / 63138 ... creating path file for vertex 23801 / 63138 ... creating path file for vertex 23901 / 63138 ... creating path file for vertex 24001 / 63138 ... creating path file for vertex 24101 / 63138 ... creating path file for vertex 24201 / 63138 ... creating path file for vertex 24301 / 63138 ... creating path file for vertex 24401 / 63138 ... creating path file for vertex 24501 / 63138 ... creating path file for vertex 24601 / 63138 ... creating path file for vertex 24701 / 63138 ... creating path file for vertex 24801 / 63138 ... creating path file for vertex 24901 / 63138 ... creating path file for vertex 25001 / 63138 area file for outer ROIs saved at 25001 ... creating path file for vertex 25101 / 63138 ... creating path file for vertex 25201 / 63138 ... creating path file for vertex 25301 / 63138 ... creating path file for vertex 25401 / 63138 ... creating path file for vertex 25501 / 63138 ... creating path file for vertex 25601 / 63138 ... creating path file for vertex 25701 / 63138 ... creating path file for vertex 25801 / 63138 ... creating path file for vertex 25901 / 63138 ... creating path file for vertex 26001 / 63138 ... creating path file for vertex 26101 / 63138 ... creating path file for vertex 26201 / 63138 ... creating path file for vertex 26301 / 63138 ... creating path file for vertex 26401 / 63138 ... creating path file for vertex 26501 / 63138 ... creating path file for vertex 26601 / 63138 ... creating path file for vertex 26701 / 63138 ... creating path file for vertex 26801 / 63138 ... creating path file for vertex 26901 / 63138 ... creating path file for vertex 27001 / 63138 ... creating path file for vertex 27101 / 63138 ... creating path file for vertex 27201 / 63138 ... creating path file for vertex 27301 / 63138 ... creating path file for vertex 27401 / 63138 ... creating path file for vertex 27501 / 63138 ... creating path file for vertex 27601 / 63138 ... creating path file for vertex 27701 / 63138 ... creating path file for vertex 27801 / 63138 ... creating path file for vertex 27901 / 63138 ... creating path file for vertex 28001 / 63138 ... creating path file for vertex 28101 / 63138 ... creating path file for vertex 28201 / 63138 ... creating path file for vertex 28301 / 63138 ... creating path file for vertex 28401 / 63138 ... creating path file for vertex 28501 / 63138 ... creating path file for vertex 28601 / 63138 ... creating path file for vertex 28701 / 63138 ... creating path file for vertex 28801 / 63138 ... creating path file for vertex 28901 / 63138 ... creating path file for vertex 29001 / 63138 ... creating path file for vertex 29101 / 63138 ... creating path file for vertex 29201 / 63138 ... creating path file for vertex 29301 / 63138 ... creating path file for vertex 29401 / 63138 ... creating path file for vertex 29501 / 63138 ... creating path file for vertex 29601 / 63138 ... creating path file for vertex 29701 / 63138 ... creating path file for vertex 29801 / 63138 ... creating path file for vertex 29901 / 63138 ... creating path file for vertex 30001 / 63138 area file for outer ROIs saved at 30001 ... creating path file for vertex 30101 / 63138 ... creating path file for vertex 30201 / 63138 ... creating path file for vertex 30301 / 63138 ... creating path file for vertex 30401 / 63138 ... creating path file for vertex 30501 / 63138 ... creating path file for vertex 30601 / 63138 ... creating path file for vertex 30701 / 63138 ... creating path file for vertex 30801 / 63138 ... creating path file for vertex 30901 / 63138 ... creating path file for vertex 31001 / 63138 ... creating path file for vertex 31101 / 63138 ... creating path file for vertex 31201 / 63138 ... creating path file for vertex 31301 / 63138 ... creating path file for vertex 31401 / 63138 ... creating path file for vertex 31501 / 63138 ... creating path file for vertex 31601 / 63138 ... creating path file for vertex 31701 / 63138 ... creating path file for vertex 31801 / 63138 ... creating path file for vertex 31901 / 63138 ... creating path file for vertex 32001 / 63138 ... creating path file for vertex 32101 / 63138 ... creating path file for vertex 32201 / 63138 ... creating path file for vertex 32301 / 63138 ... creating path file for vertex 32401 / 63138 ... creating path file for vertex 32501 / 63138 ... creating path file for vertex 32601 / 63138 ... creating path file for vertex 32701 / 63138 ... creating path file for vertex 32801 / 63138 ... creating path file for vertex 32901 / 63138 ... creating path file for vertex 33001 / 63138 ... creating path file for vertex 33101 / 63138 ... creating path file for vertex 33201 / 63138 ... creating path file for vertex 33301 / 63138 ... creating path file for vertex 33401 / 63138 ... creating path file for vertex 33501 / 63138 ... creating path file for vertex 33601 / 63138 ... creating path file for vertex 33701 / 63138 ... creating path file for vertex 33801 / 63138 ... creating path file for vertex 33901 / 63138 ... creating path file for vertex 34001 / 63138 ... creating path file for vertex 34101 / 63138 ... creating path file for vertex 34201 / 63138 ... creating path file for vertex 34301 / 63138 ... creating path file for vertex 34401 / 63138 ... creating path file for vertex 34501 / 63138 ... creating path file for vertex 34601 / 63138 ... creating path file for vertex 34701 / 63138 ... creating path file for vertex 34801 / 63138 ... creating path file for vertex 34901 / 63138 ... creating path file for vertex 35001 / 63138 area file for outer ROIs saved at 35001 ... creating path file for vertex 35101 / 63138 ... creating path file for vertex 35201 / 63138 ... creating path file for vertex 35301 / 63138 ... creating path file for vertex 35401 / 63138 ... creating path file for vertex 35501 / 63138 ... creating path file for vertex 35601 / 63138 ... creating path file for vertex 35701 / 63138 ... creating path file for vertex 35801 / 63138 ... creating path file for vertex 35901 / 63138 ... creating path file for vertex 36001 / 63138 ... creating path file for vertex 36101 / 63138 ... creating path file for vertex 36201 / 63138 ... creating path file for vertex 36301 / 63138 ... creating path file for vertex 36401 / 63138 ... creating path file for vertex 36501 / 63138 ... creating path file for vertex 36601 / 63138 ... creating path file for vertex 36701 / 63138 ... creating path file for vertex 36801 / 63138 ... creating path file for vertex 36901 / 63138 ... creating path file for vertex 37001 / 63138 ... creating path file for vertex 37101 / 63138 ... creating path file for vertex 37201 / 63138 ... creating path file for vertex 37301 / 63138 ... creating path file for vertex 37401 / 63138 ... creating path file for vertex 37501 / 63138 ... creating path file for vertex 37601 / 63138 ... creating path file for vertex 37701 / 63138 ... creating path file for vertex 37801 / 63138 ... creating path file for vertex 37901 / 63138 ... creating path file for vertex 38001 / 63138 ... creating path file for vertex 38101 / 63138 ... creating path file for vertex 38201 / 63138 ... creating path file for vertex 38301 / 63138 ... creating path file for vertex 38401 / 63138 ... creating path file for vertex 38501 / 63138 ... creating path file for vertex 38601 / 63138 ... creating path file for vertex 38701 / 63138 ... creating path file for vertex 38801 / 63138 ... creating path file for vertex 38901 / 63138 ... creating path file for vertex 39001 / 63138 ... creating path file for vertex 39101 / 63138 ... creating path file for vertex 39201 / 63138 ... creating path file for vertex 39301 / 63138 ... creating path file for vertex 39401 / 63138 ... creating path file for vertex 39501 / 63138 ... creating path file for vertex 39601 / 63138 ... creating path file for vertex 39701 / 63138 ... creating path file for vertex 39801 / 63138 ... creating path file for vertex 39901 / 63138 ... creating path file for vertex 40001 / 63138 area file for outer ROIs saved at 40001 ... creating path file for vertex 40101 / 63138 ... creating path file for vertex 40201 / 63138 ... creating path file for vertex 40301 / 63138 ... creating path file for vertex 40401 / 63138 ... creating path file for vertex 40501 / 63138 ... creating path file for vertex 40601 / 63138 ... creating path file for vertex 40701 / 63138 ... creating path file for vertex 40801 / 63138 ... creating path file for vertex 40901 / 63138 ... creating path file for vertex 41001 / 63138 ... creating path file for vertex 41101 / 63138 ... creating path file for vertex 41201 / 63138 ... creating path file for vertex 41301 / 63138 ... creating path file for vertex 41401 / 63138 ... creating path file for vertex 41501 / 63138 ... creating path file for vertex 41601 / 63138 ... creating path file for vertex 41701 / 63138 ... creating path file for vertex 41801 / 63138 ... creating path file for vertex 41901 / 63138 ... creating path file for vertex 42001 / 63138 ... creating path file for vertex 42101 / 63138 ... creating path file for vertex 42201 / 63138 ... creating path file for vertex 42301 / 63138 ... creating path file for vertex 42401 / 63138 ... creating path file for vertex 42501 / 63138 ... creating path file for vertex 42601 / 63138 ... creating path file for vertex 42701 / 63138 ... creating path file for vertex 42801 / 63138 ... creating path file for vertex 42901 / 63138 ... creating path file for vertex 43001 / 63138 ... creating path file for vertex 43101 / 63138 ... creating path file for vertex 43201 / 63138 ... creating path file for vertex 43301 / 63138 ... creating path file for vertex 43401 / 63138 ... creating path file for vertex 43501 / 63138 ... creating path file for vertex 43601 / 63138 ... creating path file for vertex 43701 / 63138 ... creating path file for vertex 43801 / 63138 ... creating path file for vertex 43901 / 63138 ... creating path file for vertex 44001 / 63138 ... creating path file for vertex 44101 / 63138 ... creating path file for vertex 44201 / 63138 ... creating path file for vertex 44301 / 63138 ... creating path file for vertex 44401 / 63138 ... creating path file for vertex 44501 / 63138 ... creating path file for vertex 44601 / 63138 ... creating path file for vertex 44701 / 63138 ... creating path file for vertex 44801 / 63138 ... creating path file for vertex 44901 / 63138 ... creating path file for vertex 45001 / 63138 area file for outer ROIs saved at 45001 ... creating path file for vertex 45101 / 63138 ... creating path file for vertex 45201 / 63138 ... creating path file for vertex 45301 / 63138 ... creating path file for vertex 45401 / 63138 ... creating path file for vertex 45501 / 63138 ... creating path file for vertex 45601 / 63138 ... creating path file for vertex 45701 / 63138 ... creating path file for vertex 45801 / 63138 ... creating path file for vertex 45901 / 63138 ... creating path file for vertex 46001 / 63138 ... creating path file for vertex 46101 / 63138 ... creating path file for vertex 46201 / 63138 ... creating path file for vertex 46301 / 63138 ... creating path file for vertex 46401 / 63138 ... creating path file for vertex 46501 / 63138 ... creating path file for vertex 46601 / 63138 ... creating path file for vertex 46701 / 63138 ... creating path file for vertex 46801 / 63138 ... creating path file for vertex 46901 / 63138 ... creating path file for vertex 47001 / 63138 ... creating path file for vertex 47101 / 63138 ... creating path file for vertex 47201 / 63138 ... creating path file for vertex 47301 / 63138 ... creating path file for vertex 47401 / 63138 ... creating path file for vertex 47501 / 63138 ... creating path file for vertex 47601 / 63138 ... creating path file for vertex 47701 / 63138 ... creating path file for vertex 47801 / 63138 ... creating path file for vertex 47901 / 63138 ... creating path file for vertex 48001 / 63138 ... creating path file for vertex 48101 / 63138 ... creating path file for vertex 48201 / 63138 ... creating path file for vertex 48301 / 63138 ... creating path file for vertex 48401 / 63138 ... creating path file for vertex 48501 / 63138 ... creating path file for vertex 48601 / 63138 ... creating path file for vertex 48701 / 63138 ... creating path file for vertex 48801 / 63138 ... creating path file for vertex 48901 / 63138 ... creating path file for vertex 49001 / 63138 ... creating path file for vertex 49101 / 63138 ... creating path file for vertex 49201 / 63138 non geodesic regions removed from the patch ... creating path file for vertex 49301 / 63138 ... creating path file for vertex 49401 / 63138 ... creating path file for vertex 49501 / 63138 ... creating path file for vertex 49601 / 63138 ... creating path file for vertex 49701 / 63138 ... creating path file for vertex 49801 / 63138 ... creating path file for vertex 49901 / 63138 ... creating path file for vertex 50001 / 63138 area file for outer ROIs saved at 50001 ... creating path file for vertex 50101 / 63138 ... creating path file for vertex 50201 / 63138 ... creating path file for vertex 50301 / 63138 ... creating path file for vertex 50401 / 63138 ... creating path file for vertex 50501 / 63138 ... creating path file for vertex 50601 / 63138 ... creating path file for vertex 50701 / 63138 ... creating path file for vertex 50801 / 63138 ... creating path file for vertex 50901 / 63138 ... creating path file for vertex 51001 / 63138 ... creating path file for vertex 51101 / 63138 ... creating path file for vertex 51201 / 63138 ... creating path file for vertex 51301 / 63138 ... creating path file for vertex 51401 / 63138 non geodesic regions removed from the patch ... creating path file for vertex 51501 / 63138 ... creating path file for vertex 51601 / 63138 ... creating path file for vertex 51701 / 63138 ... creating path file for vertex 51801 / 63138 ... creating path file for vertex 51901 / 63138 ... creating path file for vertex 52001 / 63138 ... creating path file for vertex 52101 / 63138 ... creating path file for vertex 52201 / 63138 ... creating path file for vertex 52301 / 63138 ... creating path file for vertex 52401 / 63138 ... creating path file for vertex 52501 / 63138 ... creating path file for vertex 52601 / 63138 ... creating path file for vertex 52701 / 63138 ... creating path file for vertex 52801 / 63138 ... creating path file for vertex 52901 / 63138 ... creating path file for vertex 53001 / 63138 ... creating path file for vertex 53101 / 63138 ... creating path file for vertex 53201 / 63138 ... creating path file for vertex 53301 / 63138 ... creating path file for vertex 53401 / 63138 ... creating path file for vertex 53501 / 63138 ... creating path file for vertex 53601 / 63138 ... creating path file for vertex 53701 / 63138 ... creating path file for vertex 53801 / 63138 ... creating path file for vertex 53901 / 63138 ... creating path file for vertex 54001 / 63138 ... creating path file for vertex 54101 / 63138 ... creating path file for vertex 54201 / 63138 ... creating path file for vertex 54301 / 63138 ... creating path file for vertex 54401 / 63138 ... creating path file for vertex 54501 / 63138 ... creating path file for vertex 54601 / 63138 ... creating path file for vertex 54701 / 63138 ... creating path file for vertex 54801 / 63138 ... creating path file for vertex 54901 / 63138 ... creating path file for vertex 55001 / 63138 area file for outer ROIs saved at 55001 ... creating path file for vertex 55101 / 63138 ... creating path file for vertex 55201 / 63138 ... creating path file for vertex 55301 / 63138 ... creating path file for vertex 55401 / 63138 ... creating path file for vertex 55501 / 63138 ... creating path file for vertex 55601 / 63138 ... creating path file for vertex 55701 / 63138 ... creating path file for vertex 55801 / 63138 ... creating path file for vertex 55901 / 63138 ... creating path file for vertex 56001 / 63138 ... creating path file for vertex 56101 / 63138 ... creating path file for vertex 56201 / 63138 ... creating path file for vertex 56301 / 63138 ... creating path file for vertex 56401 / 63138 ... creating path file for vertex 56501 / 63138 ... creating path file for vertex 56601 / 63138 ... creating path file for vertex 56701 / 63138 ... creating path file for vertex 56801 / 63138 ... creating path file for vertex 56901 / 63138 ... creating path file for vertex 57001 / 63138 ... creating path file for vertex 57101 / 63138 ... creating path file for vertex 57201 / 63138 ... creating path file for vertex 57301 / 63138 ... creating path file for vertex 57401 / 63138 ... creating path file for vertex 57501 / 63138 ... creating path file for vertex 57601 / 63138 ... creating path file for vertex 57701 / 63138 ... creating path file for vertex 57801 / 63138 ... creating path file for vertex 57901 / 63138 ... creating path file for vertex 58001 / 63138 ... creating path file for vertex 58101 / 63138 ... creating path file for vertex 58201 / 63138 ... creating path file for vertex 58301 / 63138 ... creating path file for vertex 58401 / 63138 ... creating path file for vertex 58501 / 63138 ... creating path file for vertex 58601 / 63138 ... creating path file for vertex 58701 / 63138 ... creating path file for vertex 58801 / 63138 ... creating path file for vertex 58901 / 63138 ... creating path file for vertex 59001 / 63138 ... creating path file for vertex 59101 / 63138 ... creating path file for vertex 59201 / 63138 ... creating path file for vertex 59301 / 63138 ... creating path file for vertex 59401 / 63138 ... creating path file for vertex 59501 / 63138 ... creating path file for vertex 59601 / 63138 ... creating path file for vertex 59701 / 63138 ... creating path file for vertex 59801 / 63138 ... creating path file for vertex 59901 / 63138 ... creating path file for vertex 60001 / 63138 area file for outer ROIs saved at 60001 ... creating path file for vertex 60101 / 63138 ... creating path file for vertex 60201 / 63138 ... creating path file for vertex 60301 / 63138 ... creating path file for vertex 60401 / 63138 ... creating path file for vertex 60501 / 63138 ... creating path file for vertex 60601 / 63138 ... creating path file for vertex 60701 / 63138 ... creating path file for vertex 60801 / 63138 ... creating path file for vertex 60901 / 63138 ... creating path file for vertex 61001 / 63138 ... creating path file for vertex 61101 / 63138 ... creating path file for vertex 61201 / 63138 ... creating path file for vertex 61301 / 63138 ... creating path file for vertex 61401 / 63138 ... creating path file for vertex 61501 / 63138 ... creating path file for vertex 61601 / 63138 ... creating path file for vertex 61701 / 63138 ... creating path file for vertex 61801 / 63138 ... creating path file for vertex 61901 / 63138 ... creating path file for vertex 62001 / 63138 ... creating path file for vertex 62101 / 63138 ... creating path file for vertex 62201 / 63138 ... creating path file for vertex 62301 / 63138 ... creating path file for vertex 62401 / 63138 ... creating path file for vertex 62501 / 63138 ... creating path file for vertex 62601 / 63138 ... creating path file for vertex 62701 / 63138 ... creating path file for vertex 62801 / 63138 ... creating path file for vertex 62901 / 63138 ... creating path file for vertex 63001 / 63138 ... creating path file for vertex 63101 / 63138 saving area file in matlab format... DONE. deltaT = 950.2300 ================= mri_path2label --confillxfn lh.pial /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/mri_path2label.input ================= Reading lh.pial Connecting and filling vertices in path at fillseed 824 Finding path..................................................................................................................................................................................................................................................................................................................................................................... done Filling 824 nlabel 10384 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000001.label Connecting and filling vertices in path at fillseed 2302 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 2302 nlabel 10464 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000101.label Connecting and filling vertices in path at fillseed 2330 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 2330 nlabel 15194 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000201.label Connecting and filling vertices in path at fillseed 1693 Finding path..................................................................................................................................................................................................................................................................................................................................................... done Filling 1693 nlabel 10506 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000301.label Connecting and filling vertices in path at fillseed 2229 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 2229 nlabel 9383 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000401.label Connecting and filling vertices in path at fillseed 1638 Finding path.................................................................................................................................................................................................................................................................................................. done Filling 1638 nlabel 8858 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000501.label Connecting and filling vertices in path at fillseed 1740 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 1740 nlabel 10395 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000601.label Connecting and filling vertices in path at fillseed 2720 Finding path............................................................................................................................................................................................................................................................................... done Filling 2720 nlabel 8396 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000701.label Connecting and filling vertices in path at fillseed 3864 Finding path......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 3864 nlabel 8493 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000801.label Connecting and filling vertices in path at fillseed 2940 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 2940 nlabel 16014 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000901.label Connecting and filling vertices in path at fillseed 4058 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 4058 nlabel 8997 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001001.label Connecting and filling vertices in path at fillseed 6264 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 6264 nlabel 8223 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001101.label Connecting and filling vertices in path at fillseed 4587 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 4587 nlabel 8054 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001201.label Connecting and filling vertices in path at fillseed 5425 Finding path............................................................................................................................................................................................................................................................................................................................ done Filling 5425 nlabel 8945 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001301.label Connecting and filling vertices in path at fillseed 6340 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 6340 nlabel 9271 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001401.label Connecting and filling vertices in path at fillseed 4029 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 4029 nlabel 9674 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001501.label Connecting and filling vertices in path at fillseed 6980 Finding path............................................................................................................................................................................................................................................................................................................................................................. done Filling 6980 nlabel 6414 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001601.label Connecting and filling vertices in path at fillseed 5020 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 5020 nlabel 14735 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001701.label Connecting and filling vertices in path at fillseed 6995 Finding path............................................................................................................................................................................................................................................ done Filling 6995 nlabel 5205 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001801.label Connecting and filling vertices in path at fillseed 7859 Finding path...................................................................................................................................................................................................... done Filling 7859 nlabel 4809 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001901.label Connecting and filling vertices in path at fillseed 7036 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 7036 nlabel 8627 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002001.label Connecting and filling vertices in path at fillseed 5638 Finding path................................................................................................................................................................................................................................................................................................................................. done Filling 5638 nlabel 9035 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002101.label Connecting and filling vertices in path at fillseed 6621 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 6621 nlabel 14796 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002201.label Connecting and filling vertices in path at fillseed 7907 Finding path.............................................................................................................................................................................................................................................................................................................................................. done Filling 7907 nlabel 8577 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002301.label Connecting and filling vertices in path at fillseed 5794 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 5794 nlabel 14921 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002401.label Connecting and filling vertices in path at fillseed 7359 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 7359 nlabel 14477 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002501.label Connecting and filling vertices in path at fillseed 7516 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 7516 nlabel 14780 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002601.label Connecting and filling vertices in path at fillseed 9798 Finding path..................................................................................................................................................................................................................................................................................................................................... done Filling 9798 nlabel 6099 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002701.label Connecting and filling vertices in path at fillseed 8915 Finding path....................................................................................................................................................................................................................................................................................................................... done Filling 8915 nlabel 8568 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002801.label Connecting and filling vertices in path at fillseed 8173 Finding path............................................................................................................................................................................................................................................................................................................................................ done Filling 8173 nlabel 8819 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002901.label Connecting and filling vertices in path at fillseed 9395 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 9395 nlabel 14531 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003001.label Connecting and filling vertices in path at fillseed 10782 Finding path............................................................................................................................................................. done Filling 10782 nlabel 4094 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003101.label Connecting and filling vertices in path at fillseed 6639 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 6639 nlabel 14525 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003201.label Connecting and filling vertices in path at fillseed 9950 Finding path.................................................................................................................................................................................................................................................................................... done Filling 9950 nlabel 8527 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003301.label Connecting and filling vertices in path at fillseed 8896 Finding path............................................................................................................................................................................................................................................................ done Filling 8896 nlabel 5341 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003401.label Connecting and filling vertices in path at fillseed 11884 Finding path............................................................................................................................................................ done Filling 11884 nlabel 3626 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003501.label Connecting and filling vertices in path at fillseed 10527 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 10527 nlabel 14726 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003601.label Connecting and filling vertices in path at fillseed 13098 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 13098 nlabel 8019 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003701.label Connecting and filling vertices in path at fillseed 12040 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 12040 nlabel 9392 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003801.label Connecting and filling vertices in path at fillseed 9981 Finding path........................................................................................................................................................................................................................................................................................................... done Filling 9981 nlabel 7243 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003901.label Connecting and filling vertices in path at fillseed 13025 Finding path................................................................................................................................ done Filling 13025 nlabel 3519 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004001.label Connecting and filling vertices in path at fillseed 11615 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 11615 nlabel 16454 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004101.label Connecting and filling vertices in path at fillseed 10401 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 10401 nlabel 15696 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004201.label Connecting and filling vertices in path at fillseed 11031 Finding path................................................................................................................................................................................................................................................................... done Filling 11031 nlabel 9647 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004301.label Connecting and filling vertices in path at fillseed 9321 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 9321 nlabel 15267 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004401.label Connecting and filling vertices in path at fillseed 11614 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 11614 nlabel 16449 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004501.label Connecting and filling vertices in path at fillseed 15342 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 15342 nlabel 6932 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004601.label Connecting and filling vertices in path at fillseed 11265 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 11265 nlabel 10715 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004701.label Connecting and filling vertices in path at fillseed 14434 Finding path................................................................................................................................................................................................................................................................................................... done Filling 14434 nlabel 9706 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004801.label Connecting and filling vertices in path at fillseed 9321 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 9321 nlabel 10302 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004901.label Connecting and filling vertices in path at fillseed 20070 Finding path................................................................................................................................................................... done Filling 20070 nlabel 4409 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005001.label Connecting and filling vertices in path at fillseed 17779 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 17779 nlabel 7709 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005101.label Connecting and filling vertices in path at fillseed 14568 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 14568 nlabel 9567 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005201.label Connecting and filling vertices in path at fillseed 13385 Finding path.................................................................................................................................................................................................................................... done Filling 13385 nlabel 7536 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005301.label Connecting and filling vertices in path at fillseed 15039 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 15039 nlabel 14671 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005401.label Connecting and filling vertices in path at fillseed 18897 Finding path............................................................................................................................................................................................................................................................................................................................................................................................ done Filling 18897 nlabel 6921 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005501.label Connecting and filling vertices in path at fillseed 13536 Finding path............................................................................................................................................................................................................................................................................................................................. done Filling 13536 nlabel 9942 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005601.label Connecting and filling vertices in path at fillseed 22537 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 22537 nlabel 3236 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005701.label Connecting and filling vertices in path at fillseed 15007 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 15007 nlabel 14112 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005801.label Connecting and filling vertices in path at fillseed 23797 Finding path.................................................................................................................................................................................................................................................................................................................................................................... done Filling 23797 nlabel 7248 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005901.label Connecting and filling vertices in path at fillseed 13536 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 13536 nlabel 11254 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006001.label Connecting and filling vertices in path at fillseed 14472 Finding path.................................................................................................................................................................................................................................................................................................................................................. done Filling 14472 nlabel 8406 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006101.label Connecting and filling vertices in path at fillseed 15408 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 15408 nlabel 6386 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006201.label Connecting and filling vertices in path at fillseed 22521 Finding path................................................................................................................................................................... done Filling 22521 nlabel 3642 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006301.label Connecting and filling vertices in path at fillseed 21352 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 21352 nlabel 7643 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006401.label Connecting and filling vertices in path at fillseed 17941 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 17941 nlabel 9172 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006501.label Connecting and filling vertices in path at fillseed 16591 Finding path..................................................................................................................................................................................................................................................................................................... done Filling 16591 nlabel 6182 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006601.label Connecting and filling vertices in path at fillseed 16194 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 16194 nlabel 13861 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006701.label Connecting and filling vertices in path at fillseed 25026 Finding path............................................................................................................................................................................................................................................................................................................................................................................ done Filling 25026 nlabel 5526 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006801.label Connecting and filling vertices in path at fillseed 16116 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 16116 nlabel 15709 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006901.label Connecting and filling vertices in path at fillseed 18172 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 18172 nlabel 10375 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007001.label Connecting and filling vertices in path at fillseed 19464 Finding path................................................................................................................................................................................................................................................................................................................................................................. done Filling 19464 nlabel 10333 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007101.label Connecting and filling vertices in path at fillseed 19850 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 19850 nlabel 16322 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007201.label Connecting and filling vertices in path at fillseed 22611 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 22611 nlabel 8355 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007301.label Connecting and filling vertices in path at fillseed 22736 Finding path..................................................................................................................................................................................................................................................................................... done Filling 22736 nlabel 9147 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007401.label Connecting and filling vertices in path at fillseed 15653 Finding path........................................................................................................................................................................................................................................ done Filling 15653 nlabel 7026 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007501.label Connecting and filling vertices in path at fillseed 27493 Finding path...................................................................................................................................................................................................... done Filling 27493 nlabel 3660 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007601.label Connecting and filling vertices in path at fillseed 25079 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 25079 nlabel 8717 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007701.label Connecting and filling vertices in path at fillseed 20630 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 20630 nlabel 7663 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007801.label Connecting and filling vertices in path at fillseed 19429 Finding path............................................................................................................................................................................................................... done Filling 19429 nlabel 9341 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007901.label Connecting and filling vertices in path at fillseed 27482 Finding path................................................................................................................................................................................................................................................................................................................................................. done Filling 27482 nlabel 4201 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008001.label Connecting and filling vertices in path at fillseed 19769 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 19769 nlabel 18195 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008101.label Connecting and filling vertices in path at fillseed 24016 Finding path........................................................................................................................................................................................................................................................................ done Filling 24016 nlabel 9277 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008201.label Connecting and filling vertices in path at fillseed 20554 Finding path............................................................................................................................................................................................................................................................ done Filling 20554 nlabel 9079 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008301.label Connecting and filling vertices in path at fillseed 21088 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 21088 nlabel 15729 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008401.label Connecting and filling vertices in path at fillseed 19768 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 19768 nlabel 16477 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008501.label Connecting and filling vertices in path at fillseed 23031 Finding path......................................................................................................................................................................................................................................................................................................................... done Filling 23031 nlabel 7545 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008601.label Connecting and filling vertices in path at fillseed 20247 Finding path......................................................................................................................................................................................................................................................... done Filling 20247 nlabel 7069 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008701.label Connecting and filling vertices in path at fillseed 21077 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 21077 nlabel 16003 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008801.label Connecting and filling vertices in path at fillseed 23533 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 23533 nlabel 16659 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008901.label Connecting and filling vertices in path at fillseed 24553 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 24553 nlabel 11934 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009001.label Connecting and filling vertices in path at fillseed 25318 Finding path........................................................................................................................................................................................................................................................................................... done Filling 25318 nlabel 9329 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009101.label Connecting and filling vertices in path at fillseed 24437 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 24437 nlabel 8545 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009201.label Connecting and filling vertices in path at fillseed 32125 Finding path........................................................................................................................................................................................................................................................................................................................................................ done Filling 32125 nlabel 4161 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009301.label Connecting and filling vertices in path at fillseed 26266 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 26266 nlabel 8461 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009401.label Connecting and filling vertices in path at fillseed 23104 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 23104 nlabel 8061 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009501.label Connecting and filling vertices in path at fillseed 23946 Finding path..................................................................................................................................................................................................... done Filling 23946 nlabel 6263 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009601.label Connecting and filling vertices in path at fillseed 23505 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 23505 nlabel 16024 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009701.label Connecting and filling vertices in path at fillseed 23518 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 23518 nlabel 17229 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009801.label Connecting and filling vertices in path at fillseed 22177 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 22177 nlabel 11798 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009901.label Connecting and filling vertices in path at fillseed 24340 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 24340 nlabel 9626 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010001.label Connecting and filling vertices in path at fillseed 24113 Finding path........................................................................................................................................................................................................................................................................................................................................... done Filling 24113 nlabel 7180 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010101.label Connecting and filling vertices in path at fillseed 36646 Finding path................................................................................................................................................... done Filling 36646 nlabel 2151 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010201.label Connecting and filling vertices in path at fillseed 27518 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 27518 nlabel 6881 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010301.label Connecting and filling vertices in path at fillseed 27723 Finding path................................................................................................................................................................................................................................................................................................................................................................................. done Filling 27723 nlabel 9947 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010401.label Connecting and filling vertices in path at fillseed 26283 Finding path........................................................................................................................................................................................ done Filling 26283 nlabel 4603 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010501.label Connecting and filling vertices in path at fillseed 35517 Finding path............................................................................................................................................................................ done Filling 35517 nlabel 3361 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010601.label Connecting and filling vertices in path at fillseed 33268 Finding path..................................................................................................................................................................................................................................................................................................................................................................................... done Filling 33268 nlabel 3121 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010701.label Connecting and filling vertices in path at fillseed 27589 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 27589 nlabel 8829 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010801.label Connecting and filling vertices in path at fillseed 26751 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 26751 nlabel 8298 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010901.label Connecting and filling vertices in path at fillseed 26854 Finding path........................................................................................................................................................................................................................................................ done Filling 26854 nlabel 8682 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011001.label Connecting and filling vertices in path at fillseed 36644 Finding path.................................................................................................................................................... done Filling 36644 nlabel 2116 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011101.label Connecting and filling vertices in path at fillseed 27518 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 27518 nlabel 6345 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011201.label Connecting and filling vertices in path at fillseed 28943 Finding path............................................................................................................................................................................................................................................................................................................................................................................... done Filling 28943 nlabel 9030 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011301.label Connecting and filling vertices in path at fillseed 36694 Finding path...................................................................................................................................................... done Filling 36694 nlabel 3786 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011401.label Connecting and filling vertices in path at fillseed 36654 Finding path................................................................................................................................................................................................................................................................... done Filling 36654 nlabel 2356 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011501.label Connecting and filling vertices in path at fillseed 35515 Finding path..................................................................................................................................................................................................................................................................................................................................................... done Filling 35515 nlabel 3420 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011601.label Connecting and filling vertices in path at fillseed 28944 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 28944 nlabel 9515 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011701.label Connecting and filling vertices in path at fillseed 30477 Finding path........................................................................................................................................................................................................................................................................................................................... done Filling 30477 nlabel 7525 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011801.label Connecting and filling vertices in path at fillseed 28049 Finding path............................................................................................................................................................................................................................................. done Filling 28049 nlabel 6936 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011901.label Connecting and filling vertices in path at fillseed 37716 Finding path............................................................................................................................................................................................... done Filling 37716 nlabel 3568 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012001.label Connecting and filling vertices in path at fillseed 37789 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 37789 nlabel 6461 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012101.label Connecting and filling vertices in path at fillseed 33838 Finding path............................................................................................................................................................................................................................................................................................................................... done Filling 33838 nlabel 9152 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012201.label Connecting and filling vertices in path at fillseed 32307 Finding path.................................................................................................................................................................................... done Filling 32307 nlabel 6415 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012301.label Connecting and filling vertices in path at fillseed 29695 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 29695 nlabel 13982 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012401.label Connecting and filling vertices in path at fillseed 39856 Finding path........................................................................................................................................................................................................................................................................................ done Filling 39856 nlabel 4666 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012501.label Connecting and filling vertices in path at fillseed 38953 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 38953 nlabel 8838 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012601.label Connecting and filling vertices in path at fillseed 33714 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 33714 nlabel 7290 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012701.label Connecting and filling vertices in path at fillseed 33879 Finding path........................................................................................................................................................................................................................................................................................................................................... done Filling 33879 nlabel 8417 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012801.label Connecting and filling vertices in path at fillseed 34105 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 34105 nlabel 15679 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012901.label Connecting and filling vertices in path at fillseed 37825 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 37825 nlabel 7531 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013001.label Connecting and filling vertices in path at fillseed 37250 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 37250 nlabel 23850 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013101.label Connecting and filling vertices in path at fillseed 30423 Finding path........................................................................................................................................................................................................................................................................................................................................ done Filling 30423 nlabel 7370 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013201.label Connecting and filling vertices in path at fillseed 32957 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 32957 nlabel 15561 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013301.label Connecting and filling vertices in path at fillseed 38854 Finding path.................................................................................................................................................................................................................................................................................................................................................. done Filling 38854 nlabel 4497 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013401.label Connecting and filling vertices in path at fillseed 35111 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 35111 nlabel 23548 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013501.label Connecting and filling vertices in path at fillseed 37250 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 37250 nlabel 22474 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013601.label Connecting and filling vertices in path at fillseed 35030 Finding path................................................................................................................................................................................................................................................................................................................................................................................. done Filling 35030 nlabel 8567 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013701.label Connecting and filling vertices in path at fillseed 35238 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 35238 nlabel 31080 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013801.label Connecting and filling vertices in path at fillseed 35156 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 35156 nlabel 24243 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013901.label Connecting and filling vertices in path at fillseed 40156 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 40156 nlabel 8629 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014001.label Connecting and filling vertices in path at fillseed 38856 Finding path.......................................................................................................................................................................................... done Filling 38856 nlabel 4083 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014101.label Connecting and filling vertices in path at fillseed 37701 Finding path............................................................................................................................................................................................................................................. done Filling 37701 nlabel 1807 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014201.label Connecting and filling vertices in path at fillseed 36370 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 36370 nlabel 15514 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014301.label Connecting and filling vertices in path at fillseed 37428 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 37428 nlabel 23890 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014401.label Connecting and filling vertices in path at fillseed 35962 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 35962 nlabel 8025 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014501.label Connecting and filling vertices in path at fillseed 34677 Finding path.................................................................................................................................................................................. done Filling 34677 nlabel 6131 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014601.label Connecting and filling vertices in path at fillseed 39813 Finding path........................................................................................................................................................................................................... done Filling 39813 nlabel 3068 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014701.label Connecting and filling vertices in path at fillseed 40964 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 40964 nlabel 7349 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014801.label Connecting and filling vertices in path at fillseed 37390 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 37390 nlabel 21501 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014901.label Connecting and filling vertices in path at fillseed 37760 Finding path.................................................................................................................................................................................................................................... done Filling 37760 nlabel 3466 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015001.label Connecting and filling vertices in path at fillseed 46214 Finding path................................................................................................................................................................................................................................ done Filling 46214 nlabel 2118 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015101.label Connecting and filling vertices in path at fillseed 38581 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 38581 nlabel 29962 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015201.label Connecting and filling vertices in path at fillseed 45246 Finding path................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 45246 nlabel 7945 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015301.label Connecting and filling vertices in path at fillseed 39211 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 39211 nlabel 6945 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015401.label Connecting and filling vertices in path at fillseed 41443 Finding path......................................................................................................................................................................................................................................................................................................................................................... done Filling 41443 nlabel 6520 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015501.label Connecting and filling vertices in path at fillseed 47352 Finding path................................................................................................................................................................................ done Filling 47352 nlabel 2532 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015601.label Connecting and filling vertices in path at fillseed 47345 Finding path................................................................................................................................................................................................................ done Filling 47345 nlabel 3570 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015701.label Connecting and filling vertices in path at fillseed 43089 Finding path.......................................................................................................................................................................................................................................................................................................................................................................... done Filling 43089 nlabel 8142 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015801.label Connecting and filling vertices in path at fillseed 128627 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 128627 nlabel 8150 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015901.label Connecting and filling vertices in path at fillseed 36847 Finding path............................................................................................................................................................................ done Filling 36847 nlabel 6327 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016001.label Connecting and filling vertices in path at fillseed 47327 Finding path...................................................................................................................................................................... done Filling 47327 nlabel 2383 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016101.label Connecting and filling vertices in path at fillseed 39618 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 39618 nlabel 102114 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016201.label Connecting and filling vertices in path at fillseed 44113 Finding path................................................................................................................................................................................................................................................................................................................................................................................. done Filling 44113 nlabel 8126 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016301.label Connecting and filling vertices in path at fillseed 39369 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 39369 nlabel 9809 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016401.label Connecting and filling vertices in path at fillseed 36874 Finding path.......................................................................................................................................................................................... done Filling 36874 nlabel 6075 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016501.label Connecting and filling vertices in path at fillseed 43936 Finding path.............................................................................................................................................................................................. done Filling 43936 nlabel 2976 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016601.label Connecting and filling vertices in path at fillseed 42999 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 42999 nlabel 7272 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016701.label Connecting and filling vertices in path at fillseed 47523 Finding path.................................................................................................................................................................................................................................................................................................................................................... done Filling 47523 nlabel 7924 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016801.label Connecting and filling vertices in path at fillseed 40488 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 40488 nlabel 10452 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016901.label Connecting and filling vertices in path at fillseed 43156 Finding path......................................................................................................................................................................................... done Filling 43156 nlabel 5721 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017001.label Connecting and filling vertices in path at fillseed 43695 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 43695 nlabel 25061 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017101.label Connecting and filling vertices in path at fillseed 48507 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 48507 nlabel 7375 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017201.label Connecting and filling vertices in path at fillseed 43646 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 43646 nlabel 23666 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017301.label Connecting and filling vertices in path at fillseed 48424 Finding path................................................................................................................................................................................................ done Filling 48424 nlabel 2350 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017401.label Connecting and filling vertices in path at fillseed 44667 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 44667 nlabel 7609 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017501.label Connecting and filling vertices in path at fillseed 46211 Finding path....................................................................................................................................................................................................... done Filling 46211 nlabel 3985 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017601.label Connecting and filling vertices in path at fillseed 51857 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 51857 nlabel 6757 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017701.label Connecting and filling vertices in path at fillseed 43741 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 43741 nlabel 23319 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017801.label Connecting and filling vertices in path at fillseed 44750 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 44750 nlabel 22119 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017901.label Connecting and filling vertices in path at fillseed 49542 Finding path......................................................................................................................................................................... done Filling 49542 nlabel 1237 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018001.label Connecting and filling vertices in path at fillseed 48392 Finding path.............................................................................................................................. done Filling 48392 nlabel 2013 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018101.label Connecting and filling vertices in path at fillseed 46211 Finding path.............................................................................................................................................................................................................................................................. done Filling 46211 nlabel 4216 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018201.label Connecting and filling vertices in path at fillseed 46345 Finding path................................................................................................................................................................................................................................................................................................................................................................................ done Filling 46345 nlabel 8309 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018301.label Connecting and filling vertices in path at fillseed 45535 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 45535 nlabel 6346 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018401.label Connecting and filling vertices in path at fillseed 45148 Finding path...................................................................................................................................................... done Filling 45148 nlabel 4569 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018501.label Connecting and filling vertices in path at fillseed 46983 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 46983 nlabel 8432 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018601.label Connecting and filling vertices in path at fillseed 52870 Finding path.............................................................................................................................................................................................................................................................................................................. done Filling 52870 nlabel 4909 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018701.label Connecting and filling vertices in path at fillseed 48174 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 48174 nlabel 23455 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018801.label Connecting and filling vertices in path at fillseed 49541 Finding path............................................................................................................................................................................. done Filling 49541 nlabel 1307 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018901.label Connecting and filling vertices in path at fillseed 47973 Finding path...................................................................................................................................................................................................................................................................................................................................................................................... done Filling 47973 nlabel 6353 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019001.label Connecting and filling vertices in path at fillseed 48238 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 48238 nlabel 21939 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019101.label Connecting and filling vertices in path at fillseed 48655 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 48655 nlabel 8199 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019201.label Connecting and filling vertices in path at fillseed 49185 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 49185 nlabel 20739 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019301.label Connecting and filling vertices in path at fillseed 49531 Finding path.................................................................................................................... done Filling 49531 nlabel 1841 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019401.label Connecting and filling vertices in path at fillseed 47346 Finding path................................................................................................................................................................................................................................. done Filling 47346 nlabel 3692 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019501.label Connecting and filling vertices in path at fillseed 50448 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 50448 nlabel 22086 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019601.label Connecting and filling vertices in path at fillseed 50310 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 50310 nlabel 8986 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019701.label Connecting and filling vertices in path at fillseed 48971 Finding path......................................................................................................................................................................................... done Filling 48971 nlabel 6237 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019801.label Connecting and filling vertices in path at fillseed 53569 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 53569 nlabel 22315 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019901.label Connecting and filling vertices in path at fillseed 50792 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 50792 nlabel 8090 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020001.label Connecting and filling vertices in path at fillseed 46795 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 46795 nlabel 7900 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020101.label Connecting and filling vertices in path at fillseed 49820 Finding path................................................................................................................................................................................... done Filling 49820 nlabel 5358 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020201.label Connecting and filling vertices in path at fillseed 50250 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 50250 nlabel 7474 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020301.label Connecting and filling vertices in path at fillseed 55820 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 55820 nlabel 23325 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020401.label Connecting and filling vertices in path at fillseed 51585 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 51585 nlabel 22836 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020501.label Connecting and filling vertices in path at fillseed 53205 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 53205 nlabel 7321 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020601.label Connecting and filling vertices in path at fillseed 50982 Finding path......................................................................................................................................................................................... done Filling 50982 nlabel 6117 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020701.label Connecting and filling vertices in path at fillseed 51806 Finding path............................................................................................................................................... done Filling 51806 nlabel 2783 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020801.label Connecting and filling vertices in path at fillseed 56921 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 56921 nlabel 22760 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020901.label Connecting and filling vertices in path at fillseed 52592 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 52592 nlabel 23122 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021001.label Connecting and filling vertices in path at fillseed 51427 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 51427 nlabel 8297 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021101.label Connecting and filling vertices in path at fillseed 51231 Finding path......................................................................................................................................................................... done Filling 51231 nlabel 6471 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021201.label Connecting and filling vertices in path at fillseed 55775 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 55775 nlabel 20430 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021301.label Connecting and filling vertices in path at fillseed 53634 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 53634 nlabel 22232 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021401.label Connecting and filling vertices in path at fillseed 53483 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 53483 nlabel 22936 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021501.label Connecting and filling vertices in path at fillseed 53206 Finding path................................................................................................................................................................................................ done Filling 53206 nlabel 6471 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021601.label Connecting and filling vertices in path at fillseed 54581 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 54581 nlabel 24470 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021701.label Connecting and filling vertices in path at fillseed 56121 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 56121 nlabel 6943 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021801.label Connecting and filling vertices in path at fillseed 54221 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 54221 nlabel 9017 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021901.label Connecting and filling vertices in path at fillseed 53907 Finding path.................................................................................................................................................................. done Filling 53907 nlabel 2371 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022001.label Connecting and filling vertices in path at fillseed 53346 Finding path.............................................................................................................................................................................................................................. done Filling 53346 nlabel 6469 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022101.label Connecting and filling vertices in path at fillseed 57210 Finding path................................................................................................................................................................................................................................... done Filling 57210 nlabel 5556 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022201.label Connecting and filling vertices in path at fillseed 56197 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 56197 nlabel 7217 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022301.label Connecting and filling vertices in path at fillseed 55594 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 55594 nlabel 7694 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022401.label Connecting and filling vertices in path at fillseed 55289 Finding path................................................................................................................................................................. done Filling 55289 nlabel 6737 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022501.label Connecting and filling vertices in path at fillseed 57179 Finding path............................................................................................................................................................................................................................................. done Filling 57179 nlabel 4981 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022601.label Connecting and filling vertices in path at fillseed 58343 Finding path............................................................................................................................................................................................................................................................................ done Filling 58343 nlabel 6163 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022701.label Connecting and filling vertices in path at fillseed 57982 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 57982 nlabel 20155 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022801.label Connecting and filling vertices in path at fillseed 53883 Finding path.......................................................................................................................................... done Filling 53883 nlabel 1055 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022901.label Connecting and filling vertices in path at fillseed 53885 Finding path.................................................................................................................... done Filling 53885 nlabel 1721 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023001.label Connecting and filling vertices in path at fillseed 56891 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 56891 nlabel 22165 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023101.label Connecting and filling vertices in path at fillseed 57310 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 57310 nlabel 7374 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023201.label Connecting and filling vertices in path at fillseed 57638 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 57638 nlabel 6847 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023301.label Connecting and filling vertices in path at fillseed 58624 Finding path.................................................................................................................................................................................... done Filling 58624 nlabel 6625 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023401.label Connecting and filling vertices in path at fillseed 64814 Finding path...................................................................................................................................................................................................................................... done Filling 64814 nlabel 4187 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023501.label Connecting and filling vertices in path at fillseed 58400 Finding path............................................................................................................................................................................................................................................................................................................ done Filling 58400 nlabel 6686 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023601.label Connecting and filling vertices in path at fillseed 57953 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 57953 nlabel 22643 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023701.label Connecting and filling vertices in path at fillseed 57214 Finding path.................................................................................................................................................................................................................... done Filling 57214 nlabel 3502 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023801.label Connecting and filling vertices in path at fillseed 60118 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60118 nlabel 6791 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023901.label Connecting and filling vertices in path at fillseed 58355 Finding path......................................................................................................................................................................................................................................................................................................................................................... done Filling 58355 nlabel 6254 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024001.label Connecting and filling vertices in path at fillseed 64103 Finding path.............................................................................................................................................................................................................................................................................................................................................. done Filling 64103 nlabel 7314 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024101.label Connecting and filling vertices in path at fillseed 57165 Finding path............................................................................................................................................................................. done Filling 57165 nlabel 2107 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024201.label Connecting and filling vertices in path at fillseed 64813 Finding path....................................................................................................................................... done Filling 64813 nlabel 1884 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024301.label Connecting and filling vertices in path at fillseed 60256 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 60256 nlabel 19791 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024401.label Connecting and filling vertices in path at fillseed 61348 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 61348 nlabel 22802 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024501.label Connecting and filling vertices in path at fillseed 53893 Finding path......................................................................................................................................................... done Filling 53893 nlabel 1126 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024601.label Connecting and filling vertices in path at fillseed 64470 Finding path............................................................................................................................................................................................................... done Filling 64470 nlabel 6286 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024701.label Connecting and filling vertices in path at fillseed 61624 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 61624 nlabel 5468 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024801.label Connecting and filling vertices in path at fillseed 64078 Finding path...................................................................................................................................................................................................................................................................................................................................................... done Filling 64078 nlabel 6492 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024901.label Connecting and filling vertices in path at fillseed 57165 Finding path........................................................................................................................................................... done Filling 57165 nlabel 1879 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025001.label Connecting and filling vertices in path at fillseed 64470 Finding path........................................................................................................................................................................................................................................................................................................................ done Filling 64470 nlabel 5826 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025101.label Connecting and filling vertices in path at fillseed 61622 Finding path................................................................................................................................................................................................................................................ done Filling 61622 nlabel 4409 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025201.label Connecting and filling vertices in path at fillseed 64121 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 64121 nlabel 8657 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025301.label Connecting and filling vertices in path at fillseed 60987 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 60987 nlabel 10779 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025401.label Connecting and filling vertices in path at fillseed 61710 Finding path.......................................................................................................................................................................... done Filling 61710 nlabel 5238 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025501.label Connecting and filling vertices in path at fillseed 60210 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60210 nlabel 21981 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025601.label Connecting and filling vertices in path at fillseed 63918 Finding path........................................................................................................................................................................................................................................................................................................................................................................................ done Filling 63918 nlabel 5941 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025701.label Connecting and filling vertices in path at fillseed 63418 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 63418 nlabel 421 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025801.label Connecting and filling vertices in path at fillseed 60555 Finding path................................................................................................................................................................................................................... done Filling 60555 nlabel 2368 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025901.label Connecting and filling vertices in path at fillseed 64810 Finding path................................................................................................................................... done Filling 64810 nlabel 1915 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026001.label Connecting and filling vertices in path at fillseed 61624 Finding path................................................................................................................................................................................................................................................................................................................................................................ done Filling 61624 nlabel 6127 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026101.label Connecting and filling vertices in path at fillseed 64495 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 64495 nlabel 10000 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026201.label Connecting and filling vertices in path at fillseed 64215 Finding path.............................................................................................................................................................................................. done Filling 64215 nlabel 5976 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026301.label Connecting and filling vertices in path at fillseed 66469 Finding path...................................................................................................................................................... done Filling 66469 nlabel 6017 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026401.label Connecting and filling vertices in path at fillseed 65635 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 65635 nlabel 19398 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026501.label Connecting and filling vertices in path at fillseed 63481 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 63481 nlabel 123108 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026601.label Connecting and filling vertices in path at fillseed 73709 Finding path......................................................................................................................................................................... done Filling 73709 nlabel 950 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026701.label Connecting and filling vertices in path at fillseed 66351 Finding path............................................................................................................................................................................................................................................................................... done Filling 66351 nlabel 6589 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026801.label Connecting and filling vertices in path at fillseed 66717 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 66717 nlabel 18952 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026901.label Connecting and filling vertices in path at fillseed 67792 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 67792 nlabel 19185 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027001.label Connecting and filling vertices in path at fillseed 63164 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 63164 nlabel 10632 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027101.label Connecting and filling vertices in path at fillseed 72625 Finding path...................................................................................................................................................................................................................... done Filling 72625 nlabel 2060 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027201.label Connecting and filling vertices in path at fillseed 64587 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 64587 nlabel 6588 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027301.label Connecting and filling vertices in path at fillseed 65973 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 65973 nlabel 6602 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027401.label Connecting and filling vertices in path at fillseed 67217 Finding path................................................................................................................................................................................................................................................................................................................................................................................. done Filling 67217 nlabel 6262 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027501.label Connecting and filling vertices in path at fillseed 73719 Finding path........................................................................................................................................................................................................ done Filling 73719 nlabel 2054 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027601.label Connecting and filling vertices in path at fillseed 67570 Finding path.............................................................................................................................................................. done Filling 67570 nlabel 6000 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027701.label Connecting and filling vertices in path at fillseed 62725 Finding path.......................................................................................................................................................................................................................................................................................... done Filling 62725 nlabel 4250 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027801.label Connecting and filling vertices in path at fillseed 66684 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 66684 nlabel 24315 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027901.label Connecting and filling vertices in path at fillseed 73709 Finding path............................................. done Filling 73709 nlabel 670 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028001.label Connecting and filling vertices in path at fillseed 69782 Finding path....................................................................................................................................................................................................... done Filling 69782 nlabel 6154 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028101.label Connecting and filling vertices in path at fillseed 70141 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 70141 nlabel 19208 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028201.label Connecting and filling vertices in path at fillseed 73866 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 73866 nlabel 5691 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028301.label Connecting and filling vertices in path at fillseed 69953 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 69953 nlabel 10613 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028401.label Connecting and filling vertices in path at fillseed 72614 Finding path................................................................................................................................................................................... done Filling 72614 nlabel 739 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028501.label Connecting and filling vertices in path at fillseed 70097 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 70097 nlabel 16207 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028601.label Connecting and filling vertices in path at fillseed 68159 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 68159 nlabel 6822 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028701.label Connecting and filling vertices in path at fillseed 68380 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 68380 nlabel 6079 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028801.label Connecting and filling vertices in path at fillseed 73717 Finding path................................................................................................................................... done Filling 73717 nlabel 2501 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028901.label Connecting and filling vertices in path at fillseed 73195 Finding path...................................................................................................... done Filling 73195 nlabel 5833 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029001.label Connecting and filling vertices in path at fillseed 72371 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 72371 nlabel 16647 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029101.label Connecting and filling vertices in path at fillseed 67209 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 67209 nlabel 6081 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029201.label Connecting and filling vertices in path at fillseed 71145 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 71145 nlabel 10319 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029301.label Connecting and filling vertices in path at fillseed 74163 Finding path............................................................................................................................................................................................................ done Filling 74163 nlabel 6176 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029401.label Connecting and filling vertices in path at fillseed 73462 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 73462 nlabel 17049 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029501.label Connecting and filling vertices in path at fillseed 74916 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 74916 nlabel 5429 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029601.label Connecting and filling vertices in path at fillseed 74150 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 74150 nlabel 11162 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029701.label Connecting and filling vertices in path at fillseed 72779 Finding path...................................................................................................................................................................... done Filling 72779 nlabel 5029 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029801.label Connecting and filling vertices in path at fillseed 69955 Finding path................................................................................................................................................................ done Filling 69955 nlabel 6242 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029901.label Connecting and filling vertices in path at fillseed 74419 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 74419 nlabel 113178 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030001.label Connecting and filling vertices in path at fillseed 71841 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 71841 nlabel 7765 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030101.label Connecting and filling vertices in path at fillseed 75832 Finding path......................................................................................................... done Filling 75832 nlabel 2039 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030201.label Connecting and filling vertices in path at fillseed 77298 Finding path.............................................................................................................................................................................................. done Filling 77298 nlabel 6367 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030301.label Connecting and filling vertices in path at fillseed 75519 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 75519 nlabel 14554 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030401.label Connecting and filling vertices in path at fillseed 76004 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 76004 nlabel 5244 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030501.label Connecting and filling vertices in path at fillseed 75183 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 75183 nlabel 12743 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030601.label Connecting and filling vertices in path at fillseed 73855 Finding path................................................................................................................................................................................. done Filling 73855 nlabel 4740 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030701.label Connecting and filling vertices in path at fillseed 73704 Finding path......................................................................................................................................................................................................................................................................................................................................................... done Filling 73704 nlabel 4676 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030801.label Connecting and filling vertices in path at fillseed 76954 Finding path.................................................................................................................................................................................................................................................................................................................................... done Filling 76954 nlabel 5769 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030901.label Connecting and filling vertices in path at fillseed 79170 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 79170 nlabel 5900 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031001.label Connecting and filling vertices in path at fillseed 75242 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 75242 nlabel 13664 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031101.label Connecting and filling vertices in path at fillseed 74885 Finding path................................................................................................................................................................ done Filling 74885 nlabel 4976 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031201.label Connecting and filling vertices in path at fillseed 79680 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 79680 nlabel 4705 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031301.label Connecting and filling vertices in path at fillseed 78592 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 78592 nlabel 13934 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031401.label Connecting and filling vertices in path at fillseed 71840 Finding path........................................................................................................................................................................................................................................................................................................................................................................................... done Filling 71840 nlabel 8166 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031501.label Connecting and filling vertices in path at fillseed 78203 Finding path............................................................................................................................................................................................ done Filling 78203 nlabel 4951 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031601.label Connecting and filling vertices in path at fillseed 80589 Finding path.................................................................................................................................... done Filling 80589 nlabel 5453 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031701.label Connecting and filling vertices in path at fillseed 78615 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 78615 nlabel 3756 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031801.label Connecting and filling vertices in path at fillseed 78081 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 78081 nlabel 5984 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031901.label Connecting and filling vertices in path at fillseed 76302 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 76302 nlabel 12659 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032001.label Connecting and filling vertices in path at fillseed 79346 Finding path........................................................................................................................................................................................................................... done Filling 79346 nlabel 6516 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032101.label Connecting and filling vertices in path at fillseed 82893 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 82893 nlabel 5419 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032201.label Connecting and filling vertices in path at fillseed 78602 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 78602 nlabel 1461 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032301.label Connecting and filling vertices in path at fillseed 81412 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 81412 nlabel 8565 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032401.label Connecting and filling vertices in path at fillseed 77928 Finding path................................................................................ done Filling 77928 nlabel 2153 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032501.label Connecting and filling vertices in path at fillseed 80606 Finding path........................................................................................................... done Filling 80606 nlabel 5118 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032601.label Connecting and filling vertices in path at fillseed 77942 Finding path....................................................................................................................................................................... done Filling 77942 nlabel 5477 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032701.label Connecting and filling vertices in path at fillseed 79040 Finding path........................................................................................................................................................................................................................................................................................................................................................................................ done Filling 79040 nlabel 7897 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032801.label Connecting and filling vertices in path at fillseed 77297 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 77297 nlabel 10556 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032901.label Connecting and filling vertices in path at fillseed 79933 Finding path....................................................................................................................................................................... done Filling 79933 nlabel 3110 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033001.label Connecting and filling vertices in path at fillseed 82755 Finding path...................................................................................................................................................................... done Filling 82755 nlabel 5293 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033101.label Connecting and filling vertices in path at fillseed 82185 Finding path.................................................................................................................................................................................................................................................................................................................................................. done Filling 82185 nlabel 5802 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033201.label Connecting and filling vertices in path at fillseed 81391 Finding path................................................................................................................................................................................................................................................................................................................................................................................ done Filling 81391 nlabel 8301 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033301.label Connecting and filling vertices in path at fillseed 82506 Finding path.......................................................................................................................................................................................................................... done Filling 82506 nlabel 5301 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033401.label Connecting and filling vertices in path at fillseed 82676 Finding path..................................................................................................... done Filling 82676 nlabel 5182 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033501.label Connecting and filling vertices in path at fillseed 83934 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 83934 nlabel 5103 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033601.label Connecting and filling vertices in path at fillseed 83248 Finding path...................................................................................................................................................................................................................................................................................................................................................................... done Filling 83248 nlabel 7489 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033701.label Connecting and filling vertices in path at fillseed 83834 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 83834 nlabel 11233 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033801.label Connecting and filling vertices in path at fillseed 83266 Finding path.................................................................................................................................................... done Filling 83266 nlabel 4365 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033901.label Connecting and filling vertices in path at fillseed 87050 Finding path.................................................................................................................................................................................................................................................................................................................................................................. done Filling 87050 nlabel 5487 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034001.label Connecting and filling vertices in path at fillseed 128975 Finding path......................................................................................................................................................................................................................................................................................................................................................................... done Filling 128975 nlabel 5573 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034101.label Connecting and filling vertices in path at fillseed 84562 Finding path............................................................................................................................................................................................................................................................................................................. done Filling 84562 nlabel 8487 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034201.label Connecting and filling vertices in path at fillseed 79934 Finding path............................................................................................... done Filling 79934 nlabel 1615 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034301.label Connecting and filling vertices in path at fillseed 85927 Finding path........................................................................................................................................................ done Filling 85927 nlabel 4990 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034401.label Connecting and filling vertices in path at fillseed 82199 Finding path............................................................................................................................................................... done Filling 82199 nlabel 5507 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034501.label Connecting and filling vertices in path at fillseed 82380 Finding path............................................................................................................................................................................................................................................................................................................................................... done Filling 82380 nlabel 8385 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034601.label Connecting and filling vertices in path at fillseed 81618 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 81618 nlabel 11985 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034701.label Connecting and filling vertices in path at fillseed 79934 Finding path................................................................................ done Filling 79934 nlabel 2032 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034801.label Connecting and filling vertices in path at fillseed 77932 Finding path....................................................................................................................................................................................................................................... done Filling 77932 nlabel 3513 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034901.label Connecting and filling vertices in path at fillseed 84288 Finding path............................................................................................................................................................................................................................................................................................................................................................. done Filling 84288 nlabel 7021 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035001.label Connecting and filling vertices in path at fillseed 84562 Finding path.......................................................................................................................................................................................................................................................................................................................................................................... done Filling 84562 nlabel 8377 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035101.label Connecting and filling vertices in path at fillseed 85394 Finding path.......................................................................................................................................................................................................... done Filling 85394 nlabel 4371 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035201.label Connecting and filling vertices in path at fillseed 86917 Finding path............................................................................................................................... done Filling 86917 nlabel 5293 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035301.label Connecting and filling vertices in path at fillseed 78920 Finding path................................................................................................................................................................................................... done Filling 78920 nlabel 5314 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035401.label Connecting and filling vertices in path at fillseed 88529 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 88529 nlabel 9886 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035501.label Connecting and filling vertices in path at fillseed 85760 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 85760 nlabel 13818 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035601.label Connecting and filling vertices in path at fillseed 81040 Finding path................................................................................................................... done Filling 81040 nlabel 2463 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035701.label Connecting and filling vertices in path at fillseed 88999 Finding path........................................................................................................................................................................................................... done Filling 88999 nlabel 5640 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035801.label Connecting and filling vertices in path at fillseed 83221 Finding path...................................................................................................................................................................... done Filling 83221 nlabel 5418 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035901.label Connecting and filling vertices in path at fillseed 83419 Finding path.............................................................................................................................................................................................................................................................................................................. done Filling 83419 nlabel 8077 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036001.label Connecting and filling vertices in path at fillseed 79934 Finding path.......................................................................................... done Filling 79934 nlabel 1393 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036101.label Connecting and filling vertices in path at fillseed 87992 Finding path......................................................................................................................................... done Filling 87992 nlabel 5465 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036201.label Connecting and filling vertices in path at fillseed 86095 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 86095 nlabel 4546 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036301.label Connecting and filling vertices in path at fillseed 89481 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 89481 nlabel 8452 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036401.label Connecting and filling vertices in path at fillseed 88845 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 88845 nlabel 13809 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036501.label Connecting and filling vertices in path at fillseed 87408 Finding path............................................................................................................................................ done Filling 87408 nlabel 2700 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036601.label Connecting and filling vertices in path at fillseed 92922 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 92922 nlabel 5746 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036701.label Connecting and filling vertices in path at fillseed 83233 Finding path.......................................................................................................................................................................................... done Filling 83233 nlabel 4938 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036801.label Connecting and filling vertices in path at fillseed 92364 Finding path....................................................................................................................................................................................................................................................................................................................... done Filling 92364 nlabel 7907 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036901.label Connecting and filling vertices in path at fillseed 81040 Finding path...................................................... done Filling 81040 nlabel 1517 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037001.label Connecting and filling vertices in path at fillseed 90863 Finding path........................................................................................................................................................................................... done Filling 90863 nlabel 5326 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037101.label Connecting and filling vertices in path at fillseed 82156 Finding path.............................................................................................................................................................. done Filling 82156 nlabel 5479 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037201.label Connecting and filling vertices in path at fillseed 91006 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 91006 nlabel 5753 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037301.label Connecting and filling vertices in path at fillseed 89755 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 89755 nlabel 12698 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037401.label Connecting and filling vertices in path at fillseed 92317 Finding path............................................................................................................................................... done Filling 92317 nlabel 4890 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037501.label Connecting and filling vertices in path at fillseed 77932 Finding path................................................................................................................................................................................................................................................. done Filling 77932 nlabel 3420 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037601.label Connecting and filling vertices in path at fillseed 84302 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 84302 nlabel 6692 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037701.label Connecting and filling vertices in path at fillseed 88704 Finding path......................................................................................................................................................................................................................................................................................................................................................................... done Filling 88704 nlabel 8786 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037801.label Connecting and filling vertices in path at fillseed 87408 Finding path............................................................................................................................................. done Filling 87408 nlabel 2896 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037901.label Connecting and filling vertices in path at fillseed 79936 Finding path....................................................................................................................................................................................................................................................................................................................... done Filling 79936 nlabel 1530 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038001.label Connecting and filling vertices in path at fillseed 83190 Finding path............................................................................................................................................................................. done Filling 83190 nlabel 5568 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038101.label Connecting and filling vertices in path at fillseed 91935 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 91935 nlabel 9398 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038201.label Connecting and filling vertices in path at fillseed 90743 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 90743 nlabel 10671 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038301.label Connecting and filling vertices in path at fillseed 93589 Finding path...................................................................................................................................................... done Filling 93589 nlabel 4859 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038401.label Connecting and filling vertices in path at fillseed 78913 Finding path............................................................................................................................................................................................................... done Filling 78913 nlabel 4765 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038501.label Connecting and filling vertices in path at fillseed 84303 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 84303 nlabel 6478 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038601.label Connecting and filling vertices in path at fillseed 87701 Finding path....................................................................................................................................................................................................................................................................................................................... done Filling 87701 nlabel 8124 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038701.label Connecting and filling vertices in path at fillseed 94303 Finding path.................................................................................................................................................... done Filling 94303 nlabel 3989 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038801.label Connecting and filling vertices in path at fillseed 98698 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 98698 nlabel 6045 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038901.label Connecting and filling vertices in path at fillseed 98162 Finding path.................................................................................................................................................................................................................... done Filling 98162 nlabel 5439 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039001.label Connecting and filling vertices in path at fillseed 93396 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 93396 nlabel 7877 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039101.label Connecting and filling vertices in path at fillseed 81040 Finding path...................................................... done Filling 81040 nlabel 1782 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039201.label Connecting and filling vertices in path at fillseed 91812 Finding path...................................................................................................................................................................................................................................................................................... done Filling 91812 nlabel 6199 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039301.label Connecting and filling vertices in path at fillseed 94261 Finding path........................................................................................................................................................................................................ done Filling 94261 nlabel 4866 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039401.label Connecting and filling vertices in path at fillseed 93898 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 93898 nlabel 122096 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039501.label Connecting and filling vertices in path at fillseed 93877 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 93877 nlabel 119210 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039601.label Connecting and filling vertices in path at fillseed 96657 Finding path................................................................................................................................................................................................... done Filling 96657 nlabel 4989 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039701.label Connecting and filling vertices in path at fillseed 96201 Finding path....................................................................................................................................................................... done Filling 96201 nlabel 3311 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039801.label Connecting and filling vertices in path at fillseed 96014 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 96014 nlabel 125520 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039901.label Connecting and filling vertices in path at fillseed 89638 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 89638 nlabel 13326 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040001.label Connecting and filling vertices in path at fillseed 96300 Finding path........................................................................................................................................... done Filling 96300 nlabel 4192 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040101.label Connecting and filling vertices in path at fillseed 98725 Finding path................................................................................................................................................................................................................................................................................................................................................................................ done Filling 98725 nlabel 5822 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040201.label Connecting and filling vertices in path at fillseed 97933 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 97933 nlabel 126934 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040301.label Connecting and filling vertices in path at fillseed 95466 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 95466 nlabel 8432 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040401.label Connecting and filling vertices in path at fillseed 98376 Finding path................................................................................................................................................ done Filling 98376 nlabel 4860 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040501.label Connecting and filling vertices in path at fillseed 99393 Finding path............................................................................................................................................................................................................................ done Filling 99393 nlabel 4936 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040601.label Connecting and filling vertices in path at fillseed 129389 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 129389 nlabel 124418 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040701.label Connecting and filling vertices in path at fillseed 98171 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 98171 nlabel 4443 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040801.label Connecting and filling vertices in path at fillseed 97330 Finding path............................................................................................................................................................................................................................................................................................................................................................................. done Filling 97330 nlabel 7647 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040901.label Connecting and filling vertices in path at fillseed 97302 Finding path....................................................................................................................................................... done Filling 97302 nlabel 4499 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041001.label Connecting and filling vertices in path at fillseed 98725 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 98725 nlabel 6190 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041101.label Connecting and filling vertices in path at fillseed 129379 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 129379 nlabel 125221 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041201.label Connecting and filling vertices in path at fillseed 98767 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 98767 nlabel 125677 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041301.label Connecting and filling vertices in path at fillseed 94846 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 94846 nlabel 11113 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041401.label Connecting and filling vertices in path at fillseed 100483 Finding path................................................ done Filling 100483 nlabel 1551 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041501.label Connecting and filling vertices in path at fillseed 96209 Finding path........................................................................................................................................................................................................................ done Filling 96209 nlabel 3959 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041601.label Connecting and filling vertices in path at fillseed 98162 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 98162 nlabel 4309 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041701.label Connecting and filling vertices in path at fillseed 103151 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 103151 nlabel 11081 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041801.label Connecting and filling vertices in path at fillseed 100746 Finding path.............................................................................................................. done Filling 100746 nlabel 4454 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041901.label Connecting and filling vertices in path at fillseed 101807 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 101807 nlabel 4802 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042001.label Connecting and filling vertices in path at fillseed 98162 Finding path..................................................................................................................................................................................................................................................................................................................................................................................... done Filling 98162 nlabel 4538 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042101.label Connecting and filling vertices in path at fillseed 98388 Finding path............................................................................................................................................................................................................................................................................................................................................................ done Filling 98388 nlabel 8132 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042201.label Connecting and filling vertices in path at fillseed 102299 Finding path.................................................................................................................................................. done Filling 102299 nlabel 4609 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042301.label Connecting and filling vertices in path at fillseed 101753 Finding path............................................................................................................................................................................................................................................................................................................................................................................................ done Filling 101753 nlabel 7231 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042401.label Connecting and filling vertices in path at fillseed 98162 Finding path........................................................................................................................................................................................................................................................... done Filling 98162 nlabel 4098 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042501.label Connecting and filling vertices in path at fillseed 98254 Finding path........................................................................................................................................................................................................................................................................................... done Filling 98254 nlabel 7012 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042601.label Connecting and filling vertices in path at fillseed 104732 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 104732 nlabel 11349 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042701.label Connecting and filling vertices in path at fillseed 103030 Finding path......................................................................................................................................... done Filling 103030 nlabel 4888 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042801.label Connecting and filling vertices in path at fillseed 98955 Finding path................................................................................................................................................................................................................................ done Filling 98955 nlabel 3832 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042901.label Connecting and filling vertices in path at fillseed 98171 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 98171 nlabel 5269 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043001.label Connecting and filling vertices in path at fillseed 104560 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 104560 nlabel 12605 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043101.label Connecting and filling vertices in path at fillseed 102960 Finding path...................................................................................................... done Filling 102960 nlabel 4291 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043201.label Connecting and filling vertices in path at fillseed 98955 Finding path................................................................................................................................................................................................................................ done Filling 98955 nlabel 3845 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043301.label Connecting and filling vertices in path at fillseed 98202 Finding path............................................................................................................................................................................................................................................................................................................................................................................................ done Filling 98202 nlabel 9416 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043401.label Connecting and filling vertices in path at fillseed 99496 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 99496 nlabel 10499 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043501.label Connecting and filling vertices in path at fillseed 102960 Finding path........................................................................................................................ done Filling 102960 nlabel 4360 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043601.label Connecting and filling vertices in path at fillseed 106296 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 106296 nlabel 7349 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043701.label Connecting and filling vertices in path at fillseed 98162 Finding path......................................................................................................................................................................................................................................................................................................................... done Filling 98162 nlabel 4730 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043801.label Connecting and filling vertices in path at fillseed 105204 Finding path...................................................................................................................................................................................................................................... done Filling 105204 nlabel 7546 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043901.label Connecting and filling vertices in path at fillseed 102005 Finding path............................................................... done Filling 102005 nlabel 1714 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044001.label Connecting and filling vertices in path at fillseed 103240 Finding path.................................................................................................................................................................................................................................................................................................................................................................. done Filling 103240 nlabel 7223 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044101.label Connecting and filling vertices in path at fillseed 129441 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 129441 nlabel 125761 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044201.label Connecting and filling vertices in path at fillseed 129652 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 129652 nlabel 6783 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044301.label Connecting and filling vertices in path at fillseed 105372 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 105372 nlabel 9430 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044401.label Connecting and filling vertices in path at fillseed 106176 Finding path....................................................................................................................................................................................................................................................................................... done Filling 106176 nlabel 6783 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044501.label Connecting and filling vertices in path at fillseed 99750 Finding path......................................................................................................................................................................................................................... done Filling 99750 nlabel 3966 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044601.label Connecting and filling vertices in path at fillseed 98171 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 98171 nlabel 5345 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044701.label Connecting and filling vertices in path at fillseed 105262 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 105262 nlabel 10015 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044801.label Connecting and filling vertices in path at fillseed 105074 Finding path....................................................................................................................................... done Filling 105074 nlabel 4006 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044901.label Connecting and filling vertices in path at fillseed 102735 Finding path........................................................ done Filling 102735 nlabel 1529 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045001.label Connecting and filling vertices in path at fillseed 108569 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 108569 nlabel 4684 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045101.label Connecting and filling vertices in path at fillseed 102825 Finding path............................................................................................................................................................................................................................................................................................................................................................................ done Filling 102825 nlabel 9244 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045201.label Connecting and filling vertices in path at fillseed 105205 Finding path......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 105205 nlabel 7893 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045301.label Connecting and filling vertices in path at fillseed 106805 Finding path................................................................................................................................... done Filling 106805 nlabel 5365 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045401.label Connecting and filling vertices in path at fillseed 108508 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 108508 nlabel 9477 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045501.label Connecting and filling vertices in path at fillseed 105579 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 105579 nlabel 126214 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045601.label Connecting and filling vertices in path at fillseed 105871 Finding path.................................................................................................................................................................................................................................. done Filling 105871 nlabel 8634 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045701.label Connecting and filling vertices in path at fillseed 107249 Finding path................................................................................................................... done Filling 107249 nlabel 3288 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045801.label Connecting and filling vertices in path at fillseed 103513 Finding path.................................................................... done Filling 103513 nlabel 1863 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045901.label Connecting and filling vertices in path at fillseed 108570 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 108570 nlabel 5274 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046001.label Connecting and filling vertices in path at fillseed 107124 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 107124 nlabel 124991 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046101.label Connecting and filling vertices in path at fillseed 105944 Finding path....................................................................................................................................................................................................................................................................................................................................................................................... done Filling 105944 nlabel 8038 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046201.label Connecting and filling vertices in path at fillseed 104279 Finding path........................................................................................................................ done Filling 104279 nlabel 1173 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046301.label Connecting and filling vertices in path at fillseed 99759 Finding path............................................................................................................................................................................................................................................. done Filling 99759 nlabel 4809 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046401.label Connecting and filling vertices in path at fillseed 103577 Finding path....................................................................................................................................................................................................................................................................................................................... done Filling 103577 nlabel 5345 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046501.label Connecting and filling vertices in path at fillseed 107677 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 107677 nlabel 8741 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046601.label Connecting and filling vertices in path at fillseed 107953 Finding path.................................................................................................................... done Filling 107953 nlabel 2951 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046701.label Connecting and filling vertices in path at fillseed 102737 Finding path................................................................................................................ done Filling 102737 nlabel 2333 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046801.label Connecting and filling vertices in path at fillseed 107141 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 107141 nlabel 125341 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046901.label Connecting and filling vertices in path at fillseed 107674 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 107674 nlabel 9297 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047001.label Connecting and filling vertices in path at fillseed 106475 Finding path................................................................................... done Filling 106475 nlabel 2246 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047101.label Connecting and filling vertices in path at fillseed 103514 Finding path............................................................................................... done Filling 103514 nlabel 1940 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047201.label Connecting and filling vertices in path at fillseed 103532 Finding path........................................................................................................................................................................................................................................ done Filling 103532 nlabel 4743 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047301.label Connecting and filling vertices in path at fillseed 107854 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 107854 nlabel 122410 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047401.label Connecting and filling vertices in path at fillseed 107732 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 107732 nlabel 9185 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047501.label Connecting and filling vertices in path at fillseed 108097 Finding path.................................................................................................................................. done Filling 108097 nlabel 4969 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047601.label Connecting and filling vertices in path at fillseed 110968 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 110968 nlabel 10277 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047701.label Connecting and filling vertices in path at fillseed 129623 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 129623 nlabel 126962 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047801.label Connecting and filling vertices in path at fillseed 108037 Finding path................................................................................................................................................................................................................................................................................................. done Filling 108037 nlabel 7752 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047901.label Connecting and filling vertices in path at fillseed 111305 Finding path.................................................................................................................................................................................. done Filling 111305 nlabel 5321 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048001.label Connecting and filling vertices in path at fillseed 112306 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 112306 nlabel 10210 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048101.label Connecting and filling vertices in path at fillseed 108583 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 108583 nlabel 126612 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048201.label Connecting and filling vertices in path at fillseed 110819 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 110819 nlabel 9683 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048301.label Connecting and filling vertices in path at fillseed 111868 Finding path................................................................................................................................ done Filling 111868 nlabel 4330 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048401.label Connecting and filling vertices in path at fillseed 104281 Finding path......................................................................................................... done Filling 104281 nlabel 1883 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048501.label Connecting and filling vertices in path at fillseed 109255 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 109255 nlabel 125277 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048601.label Connecting and filling vertices in path at fillseed 110259 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 110259 nlabel 10084 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048701.label Connecting and filling vertices in path at fillseed 112012 Finding path.......................................................................................................................................... done Filling 112012 nlabel 5068 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048801.label Connecting and filling vertices in path at fillseed 112927 Finding path............................................................................................................................................................................................................................................................................................................................................................................... done Filling 112927 nlabel 8320 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048901.label Connecting and filling vertices in path at fillseed 105727 Finding path........................................................................................................................................................................................................................................ done Filling 105727 nlabel 4892 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049001.label Connecting and filling vertices in path at fillseed 112147 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 112147 nlabel 10455 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049101.label Connecting and filling vertices in path at fillseed 111082 Finding path............................................................................................................................................ done Filling 111082 nlabel 2812 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049201.label Connecting and filling vertices in path at fillseed 104284 Finding path..................................................................................................................... done Filling 104284 nlabel 1851 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049301.label Connecting and filling vertices in path at fillseed 105008 Finding path.......................................................................................................................................................................................................................................... done Filling 105008 nlabel 4841 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049401.label Connecting and filling vertices in path at fillseed 108719 Finding path......................................................................................................................................................................................................................................................................................................................... done Filling 108719 nlabel 7346 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049501.label Connecting and filling vertices in path at fillseed 109511 Finding path........................................................................................................................................................................................................................................................................................................................................................................... done Filling 109511 nlabel 8030 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049601.label Connecting and filling vertices in path at fillseed 113404 Finding path............................................................................................................................................................................................................................................................................ done Filling 113404 nlabel 9164 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049701.label Connecting and filling vertices in path at fillseed 105007 Finding path................................................................................................................................................................................................................................................. done Filling 105007 nlabel 2666 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049801.label Connecting and filling vertices in path at fillseed 105727 Finding path........................................................................................................................................................................................................................................ done Filling 105727 nlabel 4603 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049901.label Connecting and filling vertices in path at fillseed 114132 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 114132 nlabel 9675 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050001.label Connecting and filling vertices in path at fillseed 112093 Finding path.................................................................................................................................................................................................................................. done Filling 112093 nlabel 6043 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050101.label Connecting and filling vertices in path at fillseed 104285 Finding path.......................................................................................................................................................................................................................................................................................................... done Filling 104285 nlabel 2543 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050201.label Connecting and filling vertices in path at fillseed 105727 Finding path............................................................................................................................................................ done Filling 105727 nlabel 3729 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050301.label Connecting and filling vertices in path at fillseed 114744 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 114744 nlabel 9580 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050401.label Connecting and filling vertices in path at fillseed 108635 Finding path....................................................................................................................................... done Filling 108635 nlabel 1192 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050501.label Connecting and filling vertices in path at fillseed 114064 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 114064 nlabel 7808 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050601.label Connecting and filling vertices in path at fillseed 130215 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 130215 nlabel 8641 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050701.label Connecting and filling vertices in path at fillseed 113573 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 113573 nlabel 6140 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050801.label Connecting and filling vertices in path at fillseed 111942 Finding path................................................................................................................................................................................................................................................................................................................................................. done Filling 111942 nlabel 9331 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050901.label Connecting and filling vertices in path at fillseed 111073 Finding path............................................................................... done Filling 111073 nlabel 1632 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051001.label Connecting and filling vertices in path at fillseed 116947 Finding path......................................................................................................................................................................................................................................................................... done Filling 116947 nlabel 9716 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051101.label Connecting and filling vertices in path at fillseed 111814 Finding path................................................................................................................................................................. done Filling 111814 nlabel 3898 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051201.label Connecting and filling vertices in path at fillseed 114109 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 114109 nlabel 9767 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051301.label Connecting and filling vertices in path at fillseed 113675 Finding path............................................................................................................ done Filling 113675 nlabel 3578 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051401.label Connecting and filling vertices in path at fillseed 108643 Finding path...................................................... done Filling 108643 nlabel 1141 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051501.label Connecting and filling vertices in path at fillseed 111814 Finding path............................................................................................................................................................. done Filling 111814 nlabel 3879 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051601.label Connecting and filling vertices in path at fillseed 111917 Finding path.................................................................................................................................................................................................................................................................. done Filling 111917 nlabel 5528 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051701.label Connecting and filling vertices in path at fillseed 109851 Finding path....................................................................................... done Filling 109851 nlabel 1368 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051801.label Connecting and filling vertices in path at fillseed 111069 Finding path.................................................................................................................................... done Filling 111069 nlabel 2257 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051901.label Connecting and filling vertices in path at fillseed 111813 Finding path.......................................................................................................................................................................................................................... done Filling 111813 nlabel 3682 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052001.label Connecting and filling vertices in path at fillseed 117673 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 117673 nlabel 12250 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052101.label Connecting and filling vertices in path at fillseed 113299 Finding path............................................................................................................................................................................................................................................................................................................................. done Filling 113299 nlabel 5812 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052201.label Connecting and filling vertices in path at fillseed 116184 Finding path.................................................................................................................................................................................................................................................... done Filling 116184 nlabel 8095 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052301.label Connecting and filling vertices in path at fillseed 116280 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 116280 nlabel 8754 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052401.label Connecting and filling vertices in path at fillseed 117011 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 117011 nlabel 9415 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052501.label Connecting and filling vertices in path at fillseed 116980 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 116980 nlabel 11610 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052601.label Connecting and filling vertices in path at fillseed 111214 Finding path..................................................................................................................................................................................................................................................... done Filling 111214 nlabel 5050 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052701.label Connecting and filling vertices in path at fillseed 109295 Finding path.............................................. done Filling 109295 nlabel 1155 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052801.label Connecting and filling vertices in path at fillseed 118367 Finding path..................................................................................................................................................................................................................................................................................... done Filling 118367 nlabel 10173 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052901.label Connecting and filling vertices in path at fillseed 118987 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 118987 nlabel 9150 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053001.label Connecting and filling vertices in path at fillseed 116965 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 116965 nlabel 12304 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053101.label Connecting and filling vertices in path at fillseed 117453 Finding path................................................................................................................................................................................................................. done Filling 117453 nlabel 4878 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053201.label Connecting and filling vertices in path at fillseed 113085 Finding path......................................................... done Filling 113085 nlabel 1454 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053301.label Connecting and filling vertices in path at fillseed 112509 Finding path................................................................................................................................................ done Filling 112509 nlabel 3924 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053401.label Connecting and filling vertices in path at fillseed 112602 Finding path................................................................................................................................................................................................................................................................................................. done Filling 112602 nlabel 6129 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053501.label Connecting and filling vertices in path at fillseed 118236 Finding path.............................................................................................................................................................................................................................................................. done Filling 118236 nlabel 7974 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053601.label Connecting and filling vertices in path at fillseed 113107 Finding path........................................................................................................................................................ done Filling 113107 nlabel 3631 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053701.label Connecting and filling vertices in path at fillseed 115156 Finding path.................................................................................................................................................................................................................................................... done Filling 115156 nlabel 5594 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053801.label Connecting and filling vertices in path at fillseed 119221 Finding path................................................................................................ done Filling 119221 nlabel 4157 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053901.label Connecting and filling vertices in path at fillseed 121142 Finding path............................................................................................................................................................................................................................................ done Filling 121142 nlabel 9427 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054001.label Connecting and filling vertices in path at fillseed 114451 Finding path............................................................................................................................................................................................................................................................................................................................. done Filling 114451 nlabel 5742 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054101.label Connecting and filling vertices in path at fillseed 118164 Finding path......................................................................................................................................................................................................................................................................................................................................... done Filling 118164 nlabel 5404 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054201.label Connecting and filling vertices in path at fillseed 121131 Finding path............................................................................................................................................................................................................ done Filling 121131 nlabel 9415 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054301.label Connecting and filling vertices in path at fillseed 121081 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 121081 nlabel 7560 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054401.label Connecting and filling vertices in path at fillseed 118224 Finding path...................................................................................................................................................................................................................................................................... done Filling 118224 nlabel 8131 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054501.label Connecting and filling vertices in path at fillseed 121131 Finding path...................................................................................................................................................................................................................................................... done Filling 121131 nlabel 9352 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054601.label Connecting and filling vertices in path at fillseed 121077 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 121077 nlabel 9573 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054701.label Connecting and filling vertices in path at fillseed 120228 Finding path...................................................................................................... done Filling 120228 nlabel 3232 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054801.label Connecting and filling vertices in path at fillseed 117167 Finding path.......................................................................................................................................... done Filling 117167 nlabel 2682 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054901.label Connecting and filling vertices in path at fillseed 117986 Finding path................................................................................................................................................................................. done Filling 117986 nlabel 5907 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055001.label Connecting and filling vertices in path at fillseed 119727 Finding path.................................................................................................... done Filling 119727 nlabel 2349 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055101.label Connecting and filling vertices in path at fillseed 117167 Finding path......................................................................................................................................... done Filling 117167 nlabel 2552 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055201.label Connecting and filling vertices in path at fillseed 122082 Finding path................................................................................................................................................................................................................................................................................................................................................................................ done Filling 122082 nlabel 8884 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055301.label Connecting and filling vertices in path at fillseed 120225 Finding path.................................................................................................................. done Filling 120225 nlabel 2257 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055401.label Connecting and filling vertices in path at fillseed 117166 Finding path..................................................................................................................................................................................................... done Filling 117166 nlabel 129189 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055501.label Connecting and filling vertices in path at fillseed 122078 Finding path.................................................................................................................................................................................................................................. done Filling 122078 nlabel 8309 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055601.label Connecting and filling vertices in path at fillseed 118100 Finding path....................................................................................................................................................................................................................................................................... done Filling 118100 nlabel 5538 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055701.label Connecting and filling vertices in path at fillseed 123047 Finding path............................................................................................................................................................................................................................................................ done Filling 123047 nlabel 7686 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055801.label Connecting and filling vertices in path at fillseed 117892 Finding path......................................................................................................... done Filling 117892 nlabel 3823 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055901.label Connecting and filling vertices in path at fillseed 123107 Finding path................................................................................................................................................................................................................................................ done Filling 123107 nlabel 5693 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056001.label Connecting and filling vertices in path at fillseed 118553 Finding path................................................................................ done Filling 118553 nlabel 1129 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056101.label Connecting and filling vertices in path at fillseed 117879 Finding path......................................................... done Filling 117879 nlabel 1614 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056201.label Connecting and filling vertices in path at fillseed 123605 Finding path................................................................................................................................................................................................................................................................................................... done Filling 123605 nlabel 8199 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056301.label Connecting and filling vertices in path at fillseed 122987 Finding path........................................................................................................................................................................................................................................................................... done Filling 122987 nlabel 5389 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056401.label Connecting and filling vertices in path at fillseed 123905 Finding path.............................................................................................................. done Filling 123905 nlabel 2783 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056501.label Connecting and filling vertices in path at fillseed 117885 Finding path................................................................................................................................................................................................................................ done Filling 117885 nlabel 2883 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056601.label Connecting and filling vertices in path at fillseed 123607 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 123607 nlabel 7743 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056701.label Connecting and filling vertices in path at fillseed 118559 Finding path........................................................................................................................................................................ done Filling 118559 nlabel 702 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056801.label Connecting and filling vertices in path at fillseed 125176 Finding path......................................................................................................................................................................................................................................................................................................................................................... done Filling 125176 nlabel 9682 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056901.label Connecting and filling vertices in path at fillseed 116537 Finding path.................................................................................................................................................................................. done Filling 116537 nlabel 6092 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057001.label Connecting and filling vertices in path at fillseed 123912 Finding path........................................................................................................ done Filling 123912 nlabel 3526 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057101.label Connecting and filling vertices in path at fillseed 125174 Finding path....................................................................................................................................................................................................................................................... done Filling 125174 nlabel 7899 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057201.label Connecting and filling vertices in path at fillseed 120255 Finding path............................................................................................................................................... done Filling 120255 nlabel 5076 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057301.label Connecting and filling vertices in path at fillseed 124098 Finding path.......................................................................................................................................................................................................................................................................................... done Filling 124098 nlabel 6443 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057401.label Connecting and filling vertices in path at fillseed 124941 Finding path............................................................................................................................................................................................................................................................ done Filling 124941 nlabel 3703 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057501.label Connecting and filling vertices in path at fillseed 124672 Finding path...................................................................................................................................................................................................................................................................................................................... done Filling 124672 nlabel 8266 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057601.label Connecting and filling vertices in path at fillseed 124576 Finding path.................................................................................................................................................................................................................................................. done Filling 124576 nlabel 5557 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057701.label Connecting and filling vertices in path at fillseed 118553 Finding path..................................................................... done Filling 118553 nlabel 1401 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057801.label Connecting and filling vertices in path at fillseed 118574 Finding path...................................................................................................................................................................... done Filling 118574 nlabel 3972 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057901.label Connecting and filling vertices in path at fillseed 119843 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 119843 nlabel 5331 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058001.label Connecting and filling vertices in path at fillseed 126800 Finding path...................................................................................................................................................................................................................................................................................................................................... done Filling 126800 nlabel 7028 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058101.label Connecting and filling vertices in path at fillseed 125975 Finding path.............................................................................................................................................................................................................................................................................................................................................. done Filling 125975 nlabel 7872 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058201.label Connecting and filling vertices in path at fillseed 124019 Finding path................................................................................................................................................................................................................................................................ done Filling 124019 nlabel 4316 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058301.label Connecting and filling vertices in path at fillseed 118560 Finding path.......................................................... done Filling 118560 nlabel 1558 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058401.label Connecting and filling vertices in path at fillseed 121319 Finding path.............................................................................................................................................................. done Filling 121319 nlabel 4929 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058501.label Connecting and filling vertices in path at fillseed 125345 Finding path............................................................................................................................... done Filling 125345 nlabel 3077 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058601.label Connecting and filling vertices in path at fillseed 123359 Finding path..................................................................................................................................................................................... done Filling 123359 nlabel 1994 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058701.label Connecting and filling vertices in path at fillseed 130276 Finding path....................................................................................................................................................................................................................................................... done Filling 130276 nlabel 4864 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058801.label Connecting and filling vertices in path at fillseed 120743 Finding path................................................................ done Filling 120743 nlabel 1575 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058901.label Connecting and filling vertices in path at fillseed 117895 Finding path....................................................................................................................................................................................... done Filling 117895 nlabel 4771 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059001.label Connecting and filling vertices in path at fillseed 124494 Finding path.................................................................................................................................................................................................................................... done Filling 124494 nlabel 3788 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059101.label Connecting and filling vertices in path at fillseed 127701 Finding path............................................................................................................................................................................................................................................................................................................................................................ done Filling 127701 nlabel 6824 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059201.label Connecting and filling vertices in path at fillseed 122895 Finding path............................................................................................................................................................. done Filling 122895 nlabel 4684 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059301.label Connecting and filling vertices in path at fillseed 124860 Finding path.................................................................................................................. done Filling 124860 nlabel 2334 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059401.label Connecting and filling vertices in path at fillseed 123359 Finding path................................................................................................................................................................................. done Filling 123359 nlabel 1901 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059501.label Connecting and filling vertices in path at fillseed 123399 Finding path........................................................................................................................................................................................................................................ done Filling 123399 nlabel 4288 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059601.label Connecting and filling vertices in path at fillseed 120743 Finding path....................................................... done Filling 120743 nlabel 1287 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059701.label Connecting and filling vertices in path at fillseed 122852 Finding path............................................................................................................................................................................................... done Filling 122852 nlabel 3748 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059801.label Connecting and filling vertices in path at fillseed 124493 Finding path................................................................................................................................................................................................................................ done Filling 124493 nlabel 3774 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059901.label Connecting and filling vertices in path at fillseed 122850 Finding path....................................................... done Filling 122850 nlabel 1230 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060001.label Connecting and filling vertices in path at fillseed 123412 Finding path.......................................................................................................................................................................................................... done Filling 123412 nlabel 4216 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060101.label Connecting and filling vertices in path at fillseed 124861 Finding path........................................................................ done Filling 124861 nlabel 1348 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060201.label Connecting and filling vertices in path at fillseed 123361 Finding path....................................................................... done Filling 123361 nlabel 1123 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060301.label Connecting and filling vertices in path at fillseed 123398 Finding path...................................................................................................................................................................................... done Filling 123398 nlabel 4158 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060401.label Connecting and filling vertices in path at fillseed 127238 Finding path................................................................................................................................................................................... done Filling 127238 nlabel 2512 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060501.label Connecting and filling vertices in path at fillseed 123358 Finding path............................................................................ done Filling 123358 nlabel 1553 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060601.label Connecting and filling vertices in path at fillseed 123398 Finding path..................................................................................................................................................................... done Filling 123398 nlabel 4184 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060701.label Connecting and filling vertices in path at fillseed 125348 Finding path............................................................................... done Filling 125348 nlabel 1439 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060801.label Connecting and filling vertices in path at fillseed 126262 Finding path................................................................................................................................................................... done Filling 126262 nlabel 2898 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060901.label Connecting and filling vertices in path at fillseed 125970 Finding path................................................................................................................................................................................... done Filling 125970 nlabel 3124 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061001.label Connecting and filling vertices in path at fillseed 127843 Finding path............................................................................................................................................................................. done Filling 127843 nlabel 2475 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061101.label Connecting and filling vertices in path at fillseed 126262 Finding path.................................................................................................................................................................... done Filling 126262 nlabel 3051 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061201.label Connecting and filling vertices in path at fillseed 126972 Finding path................................................................................................................................................................................. done Filling 126972 nlabel 3629 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061301.label Connecting and filling vertices in path at fillseed 127837 Finding path............................................................................................................................................ done Filling 127837 nlabel 3261 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061401.label Connecting and filling vertices in path at fillseed 125832 Finding path........................................................................... done Filling 125832 nlabel 1392 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061501.label Connecting and filling vertices in path at fillseed 124901 Finding path........................................................................................................................................... done Filling 124901 nlabel 3230 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061601.label Connecting and filling vertices in path at fillseed 128258 Finding path...................................................................................................................................................................................................................................... done Filling 128258 nlabel 2456 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061701.label Connecting and filling vertices in path at fillseed 126266 Finding path........................................................................................................................................ done Filling 126266 nlabel 3272 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061801.label Connecting and filling vertices in path at fillseed 125827 Finding path......................................................................... done Filling 125827 nlabel 1613 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061901.label Connecting and filling vertices in path at fillseed 126265 Finding path.................................................................................................................................................... done Filling 126265 nlabel 2044 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062001.label Connecting and filling vertices in path at fillseed 126972 Finding path..................................................................................................................................................... done Filling 126972 nlabel 3101 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062101.label Connecting and filling vertices in path at fillseed 128405 Finding path........................................................................................................................................................................................................................................................ done Filling 128405 nlabel 1680 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062201.label Connecting and filling vertices in path at fillseed 127540 Finding path.......................................................................................................................................................... done Filling 127540 nlabel 3079 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062301.label Connecting and filling vertices in path at fillseed 126635 Finding path....................................................................... done Filling 126635 nlabel 1536 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062401.label Connecting and filling vertices in path at fillseed 126629 Finding path...................................................................................................................................................... done Filling 126629 nlabel 2130 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062501.label Connecting and filling vertices in path at fillseed 127834 Finding path....................................................................................... done Filling 127834 nlabel 1683 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062601.label Connecting and filling vertices in path at fillseed 126636 Finding path.................................................................................... done Filling 126636 nlabel 1970 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062701.label Connecting and filling vertices in path at fillseed 127551 Finding path............................................................................................................................................................................................... done Filling 127551 nlabel 2557 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062801.label Connecting and filling vertices in path at fillseed 127834 Finding path........................................................................................... done Filling 127834 nlabel 1558 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062901.label Connecting and filling vertices in path at fillseed 128063 Finding path.......................................................................................................................................................... done Filling 128063 nlabel 2279 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.063001.label Connecting and filling vertices in path at fillseed 128073 Finding path.................................................................................................................................................. done Filling 128073 nlabel 2543 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.063101.label ================= compute_lgi('lh.pial','lh.pial-outer-smoothed','/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc',100,25,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial'); exit ================= 2015-12-18 15:39:52.774 MATLAB_maci64[93202:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> loading datas ... FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.13 sec) FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.04 sec) preparing outer mesh structure ... face 5000 / 126272 face 10000 / 126272 face 15000 / 126272 face 20000 / 126272 face 25000 / 126272 face 30000 / 126272 face 35000 / 126272 face 40000 / 126272 face 45000 / 126272 face 50000 / 126272 face 55000 / 126272 face 60000 / 126272 face 65000 / 126272 face 70000 / 126272 face 75000 / 126272 face 80000 / 126272 face 85000 / 126272 face 90000 / 126272 face 95000 / 126272 face 100000 / 126272 face 105000 / 126272 face 110000 / 126272 face 115000 / 126272 face 120000 / 126272 face 125000 / 126272 reading normals info ... mesh_outer = vertices: [63138x3 double] faces: [126272x3 double] facesOfVertex: [63138x1 struct] vertexNormal: [63138x3 double] preparing pial mesh structure ... face 5000 / 260558 face 10000 / 260558 face 15000 / 260558 face 20000 / 260558 face 25000 / 260558 face 30000 / 260558 face 35000 / 260558 face 40000 / 260558 face 45000 / 260558 face 50000 / 260558 face 55000 / 260558 face 60000 / 260558 face 65000 / 260558 face 70000 / 260558 face 75000 / 260558 face 80000 / 260558 face 85000 / 260558 face 90000 / 260558 face 95000 / 260558 face 100000 / 260558 face 105000 / 260558 face 110000 / 260558 face 115000 / 260558 face 120000 / 260558 face 125000 / 260558 face 130000 / 260558 face 135000 / 260558 face 140000 / 260558 face 145000 / 260558 face 150000 / 260558 face 155000 / 260558 face 160000 / 260558 face 165000 / 260558 face 170000 / 260558 face 175000 / 260558 face 180000 / 260558 face 185000 / 260558 face 190000 / 260558 face 195000 / 260558 face 200000 / 260558 face 205000 / 260558 face 210000 / 260558 face 215000 / 260558 face 220000 / 260558 face 225000 / 260558 face 230000 / 260558 face 235000 / 260558 face 240000 / 260558 face 245000 / 260558 face 250000 / 260558 face 255000 / 260558 face 260000 / 260558 mesh_total = vertices: [130281x3 double] faces: [260558x3 double] facesOfVertex: [130281x1 struct] ...searching for mesh edges...done (247.69 sec). loading outer area information... lGI for vertex number 1 of the outer mesh is 3.4265 ratio saved at 1 lGI for vertex number 101 of the outer mesh is 3.2073 lGI for vertex number 201 of the outer mesh is 4.986 lGI for vertex number 301 of the outer mesh is 3.1876 lGI for vertex number 401 of the outer mesh is 3.2624 lGI for vertex number 501 of the outer mesh is 2.8292 lGI for vertex number 601 of the outer mesh is 3.1087 lGI for vertex number 701 of the outer mesh is 2.926 lGI for vertex number 801 of the outer mesh is 2.7614 lGI for vertex number 901 of the outer mesh is 4.8203 lGI for vertex number 1001 of the outer mesh is 2.9556 lGI for vertex number 1101 of the outer mesh is 2.9166 lGI for vertex number 1201 of the outer mesh is 2.6207 lGI for vertex number 1301 of the outer mesh is 2.7911 lGI for vertex number 1401 of the outer mesh is 3.1397 lGI for vertex number 1501 of the outer mesh is 3.3045 lGI for vertex number 1601 of the outer mesh is 2.0337 lGI for vertex number 1701 of the outer mesh is 4.6479 lGI for vertex number 1801 of the outer mesh is 1.9381 lGI for vertex number 1901 of the outer mesh is 1.6463 lGI for vertex number 2001 of the outer mesh is 2.6831 lGI for vertex number 2101 of the outer mesh is 3.0632 lGI for vertex number 2201 of the outer mesh is 4.8638 lGI for vertex number 2301 of the outer mesh is 2.6845 lGI for vertex number 2401 of the outer mesh is 4.5519 lGI for vertex number 2501 of the outer mesh is 4.6766 lGI for vertex number 2601 of the outer mesh is 4.8692 lGI for vertex number 2701 of the outer mesh is 1.8941 lGI for vertex number 2801 of the outer mesh is 2.8432 lGI for vertex number 2901 of the outer mesh is 3.0069 lGI for vertex number 3001 of the outer mesh is 4.661 lGI for vertex number 3101 of the outer mesh is 1.3378 lGI for vertex number 3201 of the outer mesh is 4.615 lGI for vertex number 3301 of the outer mesh is 2.7965 lGI for vertex number 3401 of the outer mesh is 1.9482 lGI for vertex number 3501 of the outer mesh is 1.3474 lGI for vertex number 3601 of the outer mesh is 4.6398 lGI for vertex number 3701 of the outer mesh is 2.6749 lGI for vertex number 3801 of the outer mesh is 3.0692 lGI for vertex number 3901 of the outer mesh is 2.5194 lGI for vertex number 4001 of the outer mesh is 1.3656 lGI for vertex number 4101 of the outer mesh is 5.1978 lGI for vertex number 4201 of the outer mesh is 4.915 lGI for vertex number 4301 of the outer mesh is 3.0989 lGI for vertex number 4401 of the outer mesh is 4.4463 lGI for vertex number 4501 of the outer mesh is 5.27 lGI for vertex number 4601 of the outer mesh is 2.3228 lGI for vertex number 4701 of the outer mesh is 3.3402 lGI for vertex number 4801 of the outer mesh is 3.1444 lGI for vertex number 4901 of the outer mesh is 2.9833 lGI for vertex number 5001 of the outer mesh is 1.3857 lGI for vertex number 5101 of the outer mesh is 2.5599 lGI for vertex number 5201 of the outer mesh is 3.1353 lGI for vertex number 5301 of the outer mesh is 2.4465 lGI for vertex number 5401 of the outer mesh is 4.7781 lGI for vertex number 5501 of the outer mesh is 2.249 lGI for vertex number 5601 of the outer mesh is 3.277 lGI for vertex number 5701 of the outer mesh is 1.287 lGI for vertex number 5801 of the outer mesh is 4.7969 lGI for vertex number 5901 of the outer mesh is 2.2568 lGI for vertex number 6001 of the outer mesh is 3.565 lGI for vertex number 6101 of the outer mesh is 2.8227 lGI for vertex number 6201 of the outer mesh is 2.0818 lGI for vertex number 6301 of the outer mesh is 1.2497 lGI for vertex number 6401 of the outer mesh is 2.3922 lGI for vertex number 6501 of the outer mesh is 2.9461 lGI for vertex number 6601 of the outer mesh is 2.0095 lGI for vertex number 6701 of the outer mesh is 4.7177 lGI for vertex number 6801 of the outer mesh is 1.7692 lGI for vertex number 6901 of the outer mesh is 5.1111 lGI for vertex number 7001 of the outer mesh is 3.569 lGI for vertex number 7101 of the outer mesh is 2.8169 lGI for vertex number 7201 of the outer mesh is 5.0145 lGI for vertex number 7301 of the outer mesh is 2.6026 lGI for vertex number 7401 of the outer mesh is 2.8775 lGI for vertex number 7501 of the outer mesh is 2.2873 lGI for vertex number 7601 of the outer mesh is 1.2081 lGI for vertex number 7701 of the outer mesh is 2.6635 lGI for vertex number 7801 of the outer mesh is 2.7112 lGI for vertex number 7901 of the outer mesh is 2.7058 lGI for vertex number 8001 of the outer mesh is 1.3407 lGI for vertex number 8101 of the outer mesh is 6.1121 lGI for vertex number 8201 of the outer mesh is 2.9094 lGI for vertex number 8301 of the outer mesh is 2.7497 lGI for vertex number 8401 of the outer mesh is 5.0902 lGI for vertex number 8501 of the outer mesh is 5.7225 lGI for vertex number 8601 of the outer mesh is 2.754 lGI for vertex number 8701 of the outer mesh is 2.222 lGI for vertex number 8801 of the outer mesh is 5.3176 lGI for vertex number 8901 of the outer mesh is 5.2661 lGI for vertex number 9001 of the outer mesh is 4.0711 lGI for vertex number 9101 of the outer mesh is 2.9053 lGI for vertex number 9201 of the outer mesh is 2.4753 lGI for vertex number 9301 of the outer mesh is 1.3405 lGI for vertex number 9401 of the outer mesh is 2.5057 lGI for vertex number 9501 of the outer mesh is 2.6684 lGI for vertex number 9601 of the outer mesh is 1.9377 lGI for vertex number 9701 of the outer mesh is 5.4524 lGI for vertex number 9801 of the outer mesh is 5.0129 lGI for vertex number 9901 of the outer mesh is 4.1696 lGI for vertex number 10001 of the outer mesh is 3.2315 ratio saved at 10001 lGI for vertex number 10101 of the outer mesh is 2.4603 lGI for vertex number 10201 of the outer mesh is 0.84552 lGI for vertex number 10301 of the outer mesh is 2.1396 lGI for vertex number 10401 of the outer mesh is 2.9253 lGI for vertex number 10501 of the outer mesh is 1.5329 lGI for vertex number 10601 of the outer mesh is 1.1233 lGI for vertex number 10701 of the outer mesh is 1.0908 lGI for vertex number 10801 of the outer mesh is 2.589 lGI for vertex number 10901 of the outer mesh is 2.7878 lGI for vertex number 11001 of the outer mesh is 2.8317 lGI for vertex number 11101 of the outer mesh is 0.85972 lGI for vertex number 11201 of the outer mesh is 1.9847 lGI for vertex number 11301 of the outer mesh is 2.6617 lGI for vertex number 11401 of the outer mesh is 1.257 lGI for vertex number 11501 of the outer mesh is 0.91877 lGI for vertex number 11601 of the outer mesh is 1.1677 lGI for vertex number 11701 of the outer mesh is 2.8007 lGI for vertex number 11801 of the outer mesh is 2.6598 lGI for vertex number 11901 of the outer mesh is 2.4148 lGI for vertex number 12001 of the outer mesh is 1.1911 lGI for vertex number 12101 of the outer mesh is 1.9881 lGI for vertex number 12201 of the outer mesh is 2.9332 lGI for vertex number 12301 of the outer mesh is 2.1214 lGI for vertex number 12401 of the outer mesh is 4.8392 lGI for vertex number 12501 of the outer mesh is 1.4856 lGI for vertex number 12601 of the outer mesh is 2.6296 lGI for vertex number 12701 of the outer mesh is 2.4877 lGI for vertex number 12801 of the outer mesh is 2.744 lGI for vertex number 12901 of the outer mesh is 4.5492 lGI for vertex number 13001 of the outer mesh is 2.2269 lGI for vertex number 13101 of the outer mesh is 8.5164 lGI for vertex number 13201 of the outer mesh is 2.5289 lGI for vertex number 13301 of the outer mesh is 4.9887 lGI for vertex number 13401 of the outer mesh is 1.425 ... remeasuring lGI value for vertex iV = 13501. It may take a few minutes. WARNING -- Problem for vertex iV = 13501, lGI value is aberrantly high (lGI=33.3847)... ...lGI computation will be stopped. This may be caused by topological defects, check mris_euler_number on the pial surface. ERROR: compute_lgi did not create output file '/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial_lgi.asc'! Darwin MacBook-Pro-di-Marco.local 13.3.0 Darwin Kernel Version 13.3.0: Tue Jun 3 21:27:35 PDT 2014; root:xnu-2422.110.17~1/RELEASE_X86_64 x86_64 recon-all -s T40_OM_Post exited with ERRORS at Fri Dec 18 15:57:03 EET 2015 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting \n\n New invocation of recon-all \n\n Tue Dec 22 12:21:19 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post /Applications/freesurfer/bin/recon-all -autorecon2-wm -randomness -s T40_OM_Post subjid T40_OM_Post setenv SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Actual FREESURFER_HOME /Applications/freesurfer build-stamp.txt: freesurfer-Darwin-lion-stable-pub-v5.3.0 Darwin MacBook-Pro-di-Marco.local 13.3.0 Darwin Kernel Version 13.3.0: Tue Jun 3 21:27:35 PDT 2014; root:xnu-2422.110.17~1/RELEASE_X86_64 x86_64 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 709 PhysMem: 3383M used (1375M wired), 3357M unused. ######################################## program versions used $Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 nicks Exp $ $Id: mri_motion_correct.fsl,v 1.14 2011/03/02 20:16:39 nicks Exp $ mri_convert -all-info ProgramName: mri_convert ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:20-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 FLIRT version 5.5 $Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks Exp $ mri_convert --version stable5 ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:20-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 Program nu_correct, built from: Package MNI N3, version 1.10, compiled by nicks@aspasia.local (i686-apple-darwin10.2.0) on 2010-02-26 at 14:19:30 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_normalize.c,v 1.73.2.1 2012/10/17 19:11:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:22-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_watershed.cpp,v 1.96.2.1 2011/11/08 22:18:44 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:22-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:22-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_segment.c,v 1.40 2011/03/02 00:04:24 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_label2label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:22-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_label2label.c,v 1.40.2.2 2013/04/02 16:26:15 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:22-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_em_register.c,v 1.84.2.3 2013/02/09 00:49:26 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:23-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_normalize.c,v 1.52.2.2 2012/10/17 19:11:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:23-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_register.c,v 1.78.2.3 2013/02/09 00:42:20 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:23-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_label.c,v 1.96.2.1 2012/08/28 22:11:20 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:23-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_pretess.c,v 1.20 2011/03/02 00:04:23 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:24-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_fill.c,v 1.118 2011/03/16 21:23:49 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:24-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_concatenate_lta ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:24-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_concatenate_lta.c,v 1.10 2011/03/16 21:23:48 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:24-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:24-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_smooth.c,v 1.28 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:25-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_inflate.c,v 1.43 2011/03/02 00:04:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:25-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:25-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:25-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:25-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:25-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:26-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_euler_number.c,v 1.8.2.2 2013/01/14 22:40:07 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:26-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:26-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:26-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_volmask.cpp,v 1.25 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:26-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_anatomical_stats.c,v 1.72 2011/03/02 00:04:26 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:26-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mrisp_paint.c,v 1.11 2011/03/02 00:04:35 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:26-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_curvature_stats.c,v 1.64 2011/03/02 00:04:30 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:27-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_calc.c,v 1.37.2.8 2013/01/28 17:05:17 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ ProgramName: mri_robust_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:27-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:27-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:27-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:27-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_or.c,v 1.3 2011/03/02 00:04:13 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:27-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-10:21:28-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ####################################### GCADIR /Applications/freesurfer/average GCA RB_all_2008-03-26.gca GCASkull RB_all_withskull_2008-03-26.gca AvgCurvTif average.curvature.filled.buckner40.tif GCSDIR /Applications/freesurfer/average GCS curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ####################################### INFO: current FREESURFER_HOME does not match that of previous processing. Current: /Applications/freesurfer Previous: /cdrom/Marco/freesurfer #-------------------------------------------- #@# Intensity Normalization2 Tue Dec 22 12:21:29 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri \n mri_normalize -aseg aseg.mgz -mask brainmask.mgz norm.mgz brain.mgz \n using segmentation for initial intensity normalization using MR volume brainmask.mgz to mask input volume... reading from norm.mgz... Reading aseg aseg.mgz normalizing image... processing with aseg removing outliers in the aseg WM... 1830 control points removed Building bias image building Voronoi diagram... performing soap bubble smoothing, sigma = 0... Smoothing with sigma 8 Applying bias correction building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 111 white matter peak found at 109 gm peak at 87 (87), valley at 60 (60) csf peak at 28, setting threshold to 67 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 111 white matter peak found at 109 gm peak at 84 (84), valley at 59 (59) csf peak at 28, setting threshold to 65 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to brain.mgz 3D bias adjustment took 3 minutes and 16 seconds. #-------------------------------------------- #@# Mask BFS Tue Dec 22 12:24:47 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri \n mri_mask -T 5 brain.mgz brainmask.mgz brain.finalsurfs.mgz \n threshold mask volume at 5 DoAbs = 0 Found 1483746 voxels in mask (pct= 8.84) Writing masked volume to brain.finalsurfs.mgz...done. #-------------------------------------------- #@# WM Segmentation Tue Dec 22 12:24:50 EET 2015 \n mri_binarize --i wm.mgz --min 255 --max 255 --o wm255.mgz --count wm255.txt \n $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri cmdline mri_binarize --i wm.mgz --min 255 --max 255 --o wm255.mgz --count wm255.txt sysname Darwin hostname MacBook-Pro-di-Marco.local machine x86_64 user marco input wm.mgz frame 0 nErode3d 0 nErode2d 0 output wm255.mgz Binarizing based on threshold min 255 max 255 binval 1 binvalnot 0 Found 0 values in range Counting number of voxels Found 0 voxels in final mask mri_binarize done \n mri_binarize --i wm.mgz --min 1 --max 1 --o wm1.mgz --count wm1.txt \n $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri cmdline mri_binarize --i wm.mgz --min 1 --max 1 --o wm1.mgz --count wm1.txt sysname Darwin hostname MacBook-Pro-di-Marco.local machine x86_64 user marco input wm.mgz frame 0 nErode3d 0 nErode2d 0 output wm1.mgz Binarizing based on threshold min 1 max 1 binval 1 binvalnot 0 Found 0 values in range Counting number of voxels Found 0 voxels in final mask mri_binarize done \n rm wm1.mgz wm255.mgz \n \n mri_segment -keep brain.mgz wm.seg.mgz \n preserving editing changes in output volume... doing initial intensity segmentation... using local statistics to label ambiguous voxels... computing class statistics for intensity windows... WM (104.0): 104.1 +- 5.6 [80.0 --> 125.0] GM (75.0) : 72.4 +- 14.5 [30.0 --> 96.0] setting bottom of white matter range to 86.9 setting top of gray matter range to 101.4 doing initial intensity segmentation... using local statistics to label ambiguous voxels... using local geometry to label remaining ambiguous voxels... reclassifying voxels using Gaussian border classifier... removing voxels with positive offset direction... smoothing T1 volume with sigma = 0.250 removing 1-dimensional structures... 8813 sparsely connected voxels removed... thickening thin strands.... 20 segments, 4252 filled 2377 bright non-wm voxels segmented. 5348 diagonally connected voxels added... white matter segmentation took 1.9 minutes writing output to wm.seg.mgz... \n mri_edit_wm_with_aseg -keep-in wm.seg.mgz brain.mgz aseg.mgz wm.asegedit.mgz \n preserving editing changes in input volume... auto filling took 0.63 minutes reading wm segmentation from wm.seg.mgz... 178 voxels added to wm to prevent paths from MTL structures to cortex 3845 additional wm voxels added 0 additional wm voxels added SEG EDIT: 78923 voxels turned on, 27036 voxels turned off. propagating editing to output volume from wm.seg.mgz 115,126,128 old 0 new 0 115,126,128 old 0 new 0 writing edited volume to wm.asegedit.mgz.... \n mri_pretess -keep wm.asegedit.mgz wm norm.mgz wm.mgz \n Iteration Number : 1 pass 1 (xy+): 28 found - 28 modified | TOTAL: 28 pass 2 (xy+): 0 found - 28 modified | TOTAL: 28 pass 1 (xy-): 27 found - 27 modified | TOTAL: 55 pass 2 (xy-): 0 found - 27 modified | TOTAL: 55 pass 1 (yz+): 37 found - 37 modified | TOTAL: 92 pass 2 (yz+): 0 found - 37 modified | TOTAL: 92 pass 1 (yz-): 28 found - 28 modified | TOTAL: 120 pass 2 (yz-): 0 found - 28 modified | TOTAL: 120 pass 1 (xz+): 20 found - 20 modified | TOTAL: 140 pass 2 (xz+): 0 found - 20 modified | TOTAL: 140 pass 1 (xz-): 32 found - 32 modified | TOTAL: 172 pass 2 (xz-): 0 found - 32 modified | TOTAL: 172 Iteration Number : 1 pass 1 (+++): 31 found - 31 modified | TOTAL: 31 pass 2 (+++): 0 found - 31 modified | TOTAL: 31 pass 1 (+++): 52 found - 52 modified | TOTAL: 83 pass 2 (+++): 0 found - 52 modified | TOTAL: 83 pass 1 (+++): 30 found - 30 modified | TOTAL: 113 pass 2 (+++): 0 found - 30 modified | TOTAL: 113 pass 1 (+++): 19 found - 19 modified | TOTAL: 132 pass 2 (+++): 0 found - 19 modified | TOTAL: 132 Iteration Number : 1 pass 1 (++): 102 found - 102 modified | TOTAL: 102 pass 2 (++): 0 found - 102 modified | TOTAL: 102 pass 1 (+-): 99 found - 99 modified | TOTAL: 201 pass 2 (+-): 0 found - 99 modified | TOTAL: 201 pass 1 (--): 100 found - 100 modified | TOTAL: 301 pass 2 (--): 0 found - 100 modified | TOTAL: 301 pass 1 (-+): 115 found - 115 modified | TOTAL: 416 pass 2 (-+): 0 found - 115 modified | TOTAL: 416 Iteration Number : 2 pass 1 (xy+): 18 found - 18 modified | TOTAL: 18 pass 2 (xy+): 0 found - 18 modified | TOTAL: 18 pass 1 (xy-): 15 found - 15 modified | TOTAL: 33 pass 2 (xy-): 0 found - 15 modified | TOTAL: 33 pass 1 (yz+): 7 found - 7 modified | TOTAL: 40 pass 2 (yz+): 0 found - 7 modified | TOTAL: 40 pass 1 (yz-): 12 found - 12 modified | TOTAL: 52 pass 2 (yz-): 0 found - 12 modified | TOTAL: 52 pass 1 (xz+): 12 found - 12 modified | TOTAL: 64 pass 2 (xz+): 0 found - 12 modified | TOTAL: 64 pass 1 (xz-): 12 found - 12 modified | TOTAL: 76 pass 2 (xz-): 0 found - 12 modified | TOTAL: 76 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 2 found - 2 modified | TOTAL: 2 pass 2 (+++): 0 found - 2 modified | TOTAL: 2 pass 1 (+++): 2 found - 2 modified | TOTAL: 4 pass 2 (+++): 0 found - 2 modified | TOTAL: 4 pass 1 (+++): 0 found - 0 modified | TOTAL: 4 Iteration Number : 2 pass 1 (++): 5 found - 5 modified | TOTAL: 5 pass 2 (++): 0 found - 5 modified | TOTAL: 5 pass 1 (+-): 5 found - 5 modified | TOTAL: 10 pass 2 (+-): 0 found - 5 modified | TOTAL: 10 pass 1 (--): 6 found - 6 modified | TOTAL: 16 pass 2 (--): 0 found - 6 modified | TOTAL: 16 pass 1 (-+): 2 found - 2 modified | TOTAL: 18 pass 2 (-+): 0 found - 2 modified | TOTAL: 18 Iteration Number : 3 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 1 found - 1 modified | TOTAL: 1 pass 2 (yz+): 0 found - 1 modified | TOTAL: 1 pass 1 (yz-): 2 found - 2 modified | TOTAL: 3 pass 2 (yz-): 0 found - 2 modified | TOTAL: 3 pass 1 (xz+): 1 found - 1 modified | TOTAL: 4 pass 2 (xz+): 0 found - 1 modified | TOTAL: 4 pass 1 (xz-): 0 found - 0 modified | TOTAL: 4 Iteration Number : 3 pass 1 (+++): 2 found - 2 modified | TOTAL: 2 pass 2 (+++): 0 found - 2 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 Iteration Number : 3 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 1 found - 1 modified | TOTAL: 1 pass 2 (+-): 0 found - 1 modified | TOTAL: 1 pass 1 (--): 2 found - 2 modified | TOTAL: 3 pass 2 (--): 0 found - 2 modified | TOTAL: 3 pass 1 (-+): 0 found - 0 modified | TOTAL: 3 Iteration Number : 4 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 2 found - 2 modified | TOTAL: 2 pass 2 (yz+): 0 found - 2 modified | TOTAL: 2 pass 1 (yz-): 0 found - 0 modified | TOTAL: 2 pass 1 (xz+): 1 found - 1 modified | TOTAL: 3 pass 2 (xz+): 0 found - 1 modified | TOTAL: 3 pass 1 (xz-): 0 found - 0 modified | TOTAL: 3 Iteration Number : 4 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 1 found - 1 modified | TOTAL: 1 pass 2 (+-): 0 found - 1 modified | TOTAL: 1 pass 1 (--): 0 found - 0 modified | TOTAL: 1 pass 1 (-+): 0 found - 0 modified | TOTAL: 1 Iteration Number : 5 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 5 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 5 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 831 (out of 560568: 0.148242) keeping edits binarizing input wm segmentation... Ambiguous edge configurations... Searching for edits to keep ... kept 0 WM ON voxels kept 0 WM OFF voxels mri_pretess done #-------------------------------------------- #@# Fill Tue Dec 22 12:27:37 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri \n mri_fill -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.auto_noCCseg.mgz wm.mgz filled.mgz \n logging cutting plane coordinates to ../scripts/ponscc.cut.log... INFO: Using transforms/talairach.lta and its offset for Talairach volume ... using segmentation aseg.auto_noCCseg.mgz... reading input volume...done. searching for cutting planes...voxel to talairach voxel transform 1.062 -0.055 -0.031 2.299; 0.061 1.026 0.310 -60.856; 0.017 -0.319 1.044 32.803; 0.000 0.000 0.000 1.000; voxel to talairach voxel transform 1.062 -0.055 -0.031 2.299; 0.061 1.026 0.310 -60.856; 0.017 -0.319 1.044 32.803; 0.000 0.000 0.000 1.000; reading segmented volume aseg.auto_noCCseg.mgz... Looking for area (min, max) = (350, 1400) area[0] = 1393 (min = 350, max = 1400), aspect = 0.50 (min = 0.10, max = 0.75) no need to search using seed (124, 114, 88), TAL = (4.0, -40.0, 14.0) talairach voxel to voxel transform 0.938 0.054 0.012 0.727; -0.047 0.889 -0.266 62.943; -0.030 0.271 0.877 -12.202; 0.000 0.000 0.000 1.000; segmentation indicates cc at (124, 114, 88) --> (4.0, -40.0, 14.0) done. writing output to filled.mgz... filling took 0.7 minutes talairach cc position changed to (4.00, -40.00, 14.00) Erasing brainstem...done. seed_search_size = 9, min_neighbors = 5 search rh wm seed point around talairach space:(22.00, -40.00, 14.00) SRC: (107.31, 135.96, 92.69) search lh wm seed point around talairach space (-14.00, -40.00, 14.00), SRC: (141.08, 134.27, 91.62) compute mri_fill using aseg Erasing Brain Stem and Cerebellum ... Define left and right masks using aseg: Building Voronoi diagram ... Using the Voronoi diagram to separate WM into two hemispheres ... Find the largest connected component for each hemisphere ... #-------------------------------------------- #@# Tessellate lh Tue Dec 22 12:28:19 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mri_pretess ../mri/filled.mgz 255 ../mri/norm.mgz ../mri/filled-pretess255.mgz \n Iteration Number : 1 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 1 found - 1 modified | TOTAL: 1 pass 2 (yz+): 0 found - 1 modified | TOTAL: 1 pass 1 (yz-): 9 found - 9 modified | TOTAL: 10 pass 2 (yz-): 0 found - 9 modified | TOTAL: 10 pass 1 (xz+): 1 found - 1 modified | TOTAL: 11 pass 2 (xz+): 0 found - 1 modified | TOTAL: 11 pass 1 (xz-): 0 found - 0 modified | TOTAL: 11 Iteration Number : 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 1 pass 1 (++): 1 found - 1 modified | TOTAL: 1 pass 2 (++): 0 found - 1 modified | TOTAL: 1 pass 1 (+-): 0 found - 0 modified | TOTAL: 1 pass 1 (--): 1 found - 1 modified | TOTAL: 2 pass 2 (--): 0 found - 1 modified | TOTAL: 2 pass 1 (-+): 0 found - 0 modified | TOTAL: 2 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 13 (out of 274693: 0.004733) Ambiguous edge configurations... mri_pretess done \n mri_tessellate ../mri/filled-pretess255.mgz 255 ../surf/lh.orig.nofix \n $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ slice 40: 249 vertices, 300 faces slice 50: 5461 vertices, 5718 faces slice 60: 15530 vertices, 15933 faces slice 70: 27835 vertices, 28270 faces slice 80: 39199 vertices, 39539 faces slice 90: 50221 vertices, 50638 faces slice 100: 61500 vertices, 61927 faces slice 110: 72581 vertices, 72987 faces slice 120: 83614 vertices, 84069 faces slice 130: 94425 vertices, 94869 faces slice 140: 104674 vertices, 105111 faces slice 150: 113661 vertices, 114058 faces slice 160: 120908 vertices, 121299 faces slice 170: 127464 vertices, 127779 faces slice 180: 132475 vertices, 132751 faces slice 190: 134702 vertices, 134830 faces slice 200: 134702 vertices, 134830 faces slice 210: 134702 vertices, 134830 faces slice 220: 134702 vertices, 134830 faces slice 230: 134702 vertices, 134830 faces slice 240: 134702 vertices, 134830 faces slice 250: 134702 vertices, 134830 faces using the conformed surface RAS to save vertex points... writing ../surf/lh.orig.nofix using vox2ras matrix: -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; \n rm -f ../mri/filled-pretess255.mgz \n \n mris_extract_main_component ../surf/lh.orig.nofix ../surf/lh.orig.nofix \n counting number of connected components... 134702 voxel in cpt #1: X=-128 [v=134702,e=404490,f=269660] located at (-24.011240, -21.923883, 2.173910) For the whole surface: X=-128 [v=134702,e=404490,f=269660] One single component has been found nothing to do done #-------------------------------------------- #@# Smooth1 lh Tue Dec 22 12:28:27 EET 2015 \n mris_smooth -nw ../surf/lh.orig.nofix ../surf/lh.smoothwm.nofix \n /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation1 lh Tue Dec 22 12:28:32 EET 2015 \n mris_inflate -no-save-sulc ../surf/lh.smoothwm.nofix ../surf/lh.inflated.nofix \n /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts avg radius = 46.5 mm, total surface area = 69521 mm^2 writing inflated surface to ../surf/lh.inflated.nofix inflation took 0.4 minutes Not saving sulc step 000: RMS=0.110 (target=0.015) step 005: RMS=0.084 (target=0.015) step 010: RMS=0.067 (target=0.015) step 015: RMS=0.059 (target=0.015) step 020: RMS=0.054 (target=0.015) step 025: RMS=0.051 (target=0.015) step 030: RMS=0.048 (target=0.015) step 035: RMS=0.045 (target=0.015) step 040: RMS=0.045 (target=0.015) step 045: RMS=0.044 (target=0.015) step 050: RMS=0.043 (target=0.015) step 055: RMS=0.043 (target=0.015) step 060: RMS=0.042 (target=0.015) inflation complete. Not saving sulc #-------------------------------------------- #@# QSphere lh Tue Dec 22 12:28:55 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_sphere -q ../surf/lh.inflated.nofix ../surf/lh.qsphere.nofix \n doing quick spherical unfolding. $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... vertex spacing 1.00 +- 0.59 (0.00-->7.84) (max @ vno 91073 --> 91084) face area 0.03 +- 0.04 (-0.17-->0.92) writing spherical brain to ../surf/lh.qsphere.nofix spherical transformation took 0.05 hours scaling brain by 0.346... inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=174.816, avgs=0 005/300: dt: 0.9000, rms radial error=174.556, avgs=0 010/300: dt: 0.9000, rms radial error=173.998, avgs=0 015/300: dt: 0.9000, rms radial error=173.264, avgs=0 020/300: dt: 0.9000, rms radial error=172.428, avgs=0 025/300: dt: 0.9000, rms radial error=171.534, avgs=0 030/300: dt: 0.9000, rms radial error=170.609, avgs=0 035/300: dt: 0.9000, rms radial error=169.671, avgs=0 040/300: dt: 0.9000, rms radial error=168.733, avgs=0 045/300: dt: 0.9000, rms radial error=167.792, avgs=0 050/300: dt: 0.9000, rms radial error=166.853, avgs=0 055/300: dt: 0.9000, rms radial error=165.918, avgs=0 060/300: dt: 0.9000, rms radial error=164.990, avgs=0 065/300: dt: 0.9000, rms radial error=164.066, avgs=0 070/300: dt: 0.9000, rms radial error=163.148, avgs=0 075/300: dt: 0.9000, rms radial error=162.235, avgs=0 080/300: dt: 0.9000, rms radial error=161.327, avgs=0 085/300: dt: 0.9000, rms radial error=160.424, avgs=0 090/300: dt: 0.9000, rms radial error=159.525, avgs=0 095/300: dt: 0.9000, rms radial error=158.631, avgs=0 100/300: dt: 0.9000, rms radial error=157.742, avgs=0 105/300: dt: 0.9000, rms radial error=156.857, avgs=0 110/300: dt: 0.9000, rms radial error=155.977, avgs=0 115/300: dt: 0.9000, rms radial error=155.101, avgs=0 120/300: dt: 0.9000, rms radial error=154.230, avgs=0 125/300: dt: 0.9000, rms radial error=153.364, avgs=0 130/300: dt: 0.9000, rms radial error=152.503, avgs=0 135/300: dt: 0.9000, rms radial error=151.646, avgs=0 140/300: dt: 0.9000, rms radial error=150.795, avgs=0 145/300: dt: 0.9000, rms radial error=149.948, avgs=0 150/300: dt: 0.9000, rms radial error=149.105, avgs=0 155/300: dt: 0.9000, rms radial error=148.268, avgs=0 160/300: dt: 0.9000, rms radial error=147.434, avgs=0 165/300: dt: 0.9000, rms radial error=146.605, avgs=0 170/300: dt: 0.9000, rms radial error=145.781, avgs=0 175/300: dt: 0.9000, rms radial error=144.962, avgs=0 180/300: dt: 0.9000, rms radial error=144.146, avgs=0 185/300: dt: 0.9000, rms radial error=143.336, avgs=0 190/300: dt: 0.9000, rms radial error=142.530, avgs=0 195/300: dt: 0.9000, rms radial error=141.728, avgs=0 200/300: dt: 0.9000, rms radial error=140.930, avgs=0 205/300: dt: 0.9000, rms radial error=140.137, avgs=0 210/300: dt: 0.9000, rms radial error=139.348, avgs=0 215/300: dt: 0.9000, rms radial error=138.564, avgs=0 220/300: dt: 0.9000, rms radial error=137.784, avgs=0 225/300: dt: 0.9000, rms radial error=137.008, avgs=0 230/300: dt: 0.9000, rms radial error=136.237, avgs=0 235/300: dt: 0.9000, rms radial error=135.469, avgs=0 240/300: dt: 0.9000, rms radial error=134.706, avgs=0 245/300: dt: 0.9000, rms radial error=133.948, avgs=0 250/300: dt: 0.9000, rms radial error=133.193, avgs=0 255/300: dt: 0.9000, rms radial error=132.443, avgs=0 260/300: dt: 0.9000, rms radial error=131.697, avgs=0 265/300: dt: 0.9000, rms radial error=130.955, avgs=0 270/300: dt: 0.9000, rms radial error=130.217, avgs=0 275/300: dt: 0.9000, rms radial error=129.484, avgs=0 280/300: dt: 0.9000, rms radial error=128.754, avgs=0 285/300: dt: 0.9000, rms radial error=128.028, avgs=0 290/300: dt: 0.9000, rms radial error=127.307, avgs=0 295/300: dt: 0.9000, rms radial error=126.589, avgs=0 300/300: dt: 0.9000, rms radial error=125.876, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 15290.28 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00008 epoch 2 (K=40.0), pass 1, starting sse = 2459.67 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00020 epoch 3 (K=160.0), pass 1, starting sse = 246.47 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.02/10 = 0.00169 epoch 4 (K=640.0), pass 1, starting sse = 24.04 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.05/11 = 0.00489 final distance error %100000.00 #-------------------------------------------- #@# Fix Topology lh Tue Dec 22 12:31:43 EET 2015 \n cp ../surf/lh.orig.nofix ../surf/lh.orig \n \n cp ../surf/lh.inflated.nofix ../surf/lh.inflated \n /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_fix_topology -mgz -sphere qsphere.nofix -ga T40_OM_Post lh \n reading spherical homeomorphism from 'qsphere.nofix' using genetic algorithm with optimized parameters ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ before topology correction, eno=-128 (nv=134702, nf=269660, ne=404490, g=65) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 8 iterations marking ambiguous vertices... 10351 ambiguous faces found in tessellation segmenting defects... 69 defects found, arbitrating ambiguous regions... analyzing neighboring defects... -merging segment 33 into 27 -merging segment 42 into 35 -merging segment 51 into 46 -merging segment 56 into 57 -merging segment 58 into 57 64 defects to be corrected 0 vertices coincident reading input surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Computing Initial Surface Statistics -face loglikelihood: -8.7890 (-4.3945) -vertex loglikelihood: -6.0045 (-3.0023) -normal dot loglikelihood: -3.6382 (-3.6382) -quad curv loglikelihood: -6.2705 (-3.1353) Total Loglikelihood : -24.7023 CORRECTING DEFECT 0 (vertices=107, convex hull=154) After retessellation of defect 0, euler #=-61 (128527,383315,254727) : difference with theory (-61) = 0 CORRECTING DEFECT 1 (vertices=127, convex hull=173) After retessellation of defect 1, euler #=-60 (128600,383616,254956) : difference with theory (-60) = 0 CORRECTING DEFECT 2 (vertices=45, convex hull=87) After retessellation of defect 2, euler #=-59 (128621,383719,255039) : difference with theory (-59) = 0 CORRECTING DEFECT 3 (vertices=53, convex hull=78) After retessellation of defect 3, euler #=-58 (128646,383827,255123) : difference with theory (-58) = 0 CORRECTING DEFECT 4 (vertices=22, convex hull=21) After retessellation of defect 4, euler #=-57 (128646,383834,255131) : difference with theory (-57) = 0 CORRECTING DEFECT 5 (vertices=43, convex hull=98) After retessellation of defect 5, euler #=-56 (128676,383964,255232) : difference with theory (-56) = 0 CORRECTING DEFECT 6 (vertices=26, convex hull=69) After retessellation of defect 6, euler #=-55 (128691,384037,255291) : difference with theory (-55) = 0 CORRECTING DEFECT 7 (vertices=66, convex hull=78) After retessellation of defect 7, euler #=-54 (128715,384145,255376) : difference with theory (-54) = 0 CORRECTING DEFECT 8 (vertices=71, convex hull=79) After retessellation of defect 8, euler #=-53 (128764,384323,255506) : difference with theory (-53) = 0 CORRECTING DEFECT 9 (vertices=26, convex hull=56) After retessellation of defect 9, euler #=-52 (128774,384374,255548) : difference with theory (-52) = 0 CORRECTING DEFECT 10 (vertices=150, convex hull=186) After retessellation of defect 10, euler #=-51 (128868,384744,255825) : difference with theory (-51) = 0 CORRECTING DEFECT 11 (vertices=33, convex hull=100) After retessellation of defect 11, euler #=-50 (128887,384843,255906) : difference with theory (-50) = 0 CORRECTING DEFECT 12 (vertices=130, convex hull=130) After retessellation of defect 12, euler #=-49 (128934,385045,256062) : difference with theory (-49) = 0 CORRECTING DEFECT 13 (vertices=34, convex hull=62) After retessellation of defect 13, euler #=-48 (128957,385139,256134) : difference with theory (-48) = 0 CORRECTING DEFECT 14 (vertices=36, convex hull=77) After retessellation of defect 14, euler #=-47 (128966,385196,256183) : difference with theory (-47) = 0 CORRECTING DEFECT 15 (vertices=28, convex hull=34) After retessellation of defect 15, euler #=-46 (128969,385215,256200) : difference with theory (-46) = 0 CORRECTING DEFECT 16 (vertices=23, convex hull=64) After retessellation of defect 16, euler #=-45 (128982,385279,256252) : difference with theory (-45) = 0 CORRECTING DEFECT 17 (vertices=22, convex hull=20) After retessellation of defect 17, euler #=-44 (128986,385296,256266) : difference with theory (-44) = 0 CORRECTING DEFECT 18 (vertices=31, convex hull=56) After retessellation of defect 18, euler #=-43 (129003,385370,256324) : difference with theory (-43) = 0 CORRECTING DEFECT 19 (vertices=76, convex hull=47) After retessellation of defect 19, euler #=-42 (129012,385412,256358) : difference with theory (-42) = 0 CORRECTING DEFECT 20 (vertices=57, convex hull=62) After retessellation of defect 20, euler #=-41 (129021,385468,256406) : difference with theory (-41) = 0 CORRECTING DEFECT 21 (vertices=16, convex hull=45) After retessellation of defect 21, euler #=-40 (129029,385507,256438) : difference with theory (-40) = 0 CORRECTING DEFECT 22 (vertices=25, convex hull=47) After retessellation of defect 22, euler #=-39 (129043,385565,256483) : difference with theory (-39) = 0 CORRECTING DEFECT 23 (vertices=28, convex hull=69) After retessellation of defect 23, euler #=-38 (129056,385630,256536) : difference with theory (-38) = 0 CORRECTING DEFECT 24 (vertices=39, convex hull=45) After retessellation of defect 24, euler #=-37 (129063,385664,256564) : difference with theory (-37) = 0 CORRECTING DEFECT 25 (vertices=44, convex hull=81) After retessellation of defect 25, euler #=-36 (129072,385725,256617) : difference with theory (-36) = 0 CORRECTING DEFECT 26 (vertices=158, convex hull=107) After retessellation of defect 26, euler #=-35 (129139,385974,256800) : difference with theory (-35) = 0 CORRECTING DEFECT 27 (vertices=127, convex hull=157) After retessellation of defect 27, euler #=-33 (129207,386268,257028) : difference with theory (-34) = -1 CORRECTING DEFECT 28 (vertices=9, convex hull=25) After retessellation of defect 28, euler #=-32 (129209,386282,257041) : difference with theory (-33) = -1 CORRECTING DEFECT 29 (vertices=33, convex hull=45) After retessellation of defect 29, euler #=-31 (129221,386335,257083) : difference with theory (-32) = -1 CORRECTING DEFECT 30 (vertices=56, convex hull=56) Warning - incorrect dp selected!!!!(-85.141489 >= -85.141495 ) After retessellation of defect 30, euler #=-30 (129230,386386,257126) : difference with theory (-31) = -1 CORRECTING DEFECT 31 (vertices=261, convex hull=169) After retessellation of defect 31, euler #=-29 (129258,386551,257264) : difference with theory (-30) = -1 CORRECTING DEFECT 32 (vertices=19, convex hull=63) After retessellation of defect 32, euler #=-28 (129267,386601,257306) : difference with theory (-29) = -1 CORRECTING DEFECT 33 (vertices=35, convex hull=44) After retessellation of defect 33, euler #=-27 (129282,386662,257353) : difference with theory (-28) = -1 CORRECTING DEFECT 34 (vertices=2232, convex hull=788) After retessellation of defect 34, euler #=-29 (129857,388839,258953) : difference with theory (-27) = 2 CORRECTING DEFECT 35 (vertices=26, convex hull=59) After retessellation of defect 35, euler #=-28 (129872,388906,259006) : difference with theory (-26) = 2 CORRECTING DEFECT 36 (vertices=87, convex hull=49) After retessellation of defect 36, euler #=-27 (129881,388956,259048) : difference with theory (-25) = 2 CORRECTING DEFECT 37 (vertices=45, convex hull=30) After retessellation of defect 37, euler #=-26 (129885,388977,259066) : difference with theory (-24) = 2 CORRECTING DEFECT 38 (vertices=6, convex hull=15) After retessellation of defect 38, euler #=-25 (129885,388982,259072) : difference with theory (-23) = 2 CORRECTING DEFECT 39 (vertices=93, convex hull=96) After retessellation of defect 39, euler #=-24 (129915,389113,259174) : difference with theory (-22) = 2 CORRECTING DEFECT 40 (vertices=171, convex hull=58) After retessellation of defect 40, euler #=-23 (129924,389161,259214) : difference with theory (-21) = 2 CORRECTING DEFECT 41 (vertices=127, convex hull=65) After retessellation of defect 41, euler #=-22 (129932,389212,259258) : difference with theory (-20) = 2 CORRECTING DEFECT 42 (vertices=375, convex hull=138) After retessellation of defect 42, euler #=-21 (129986,389444,259437) : difference with theory (-19) = 2 CORRECTING DEFECT 43 (vertices=120, convex hull=90) After retessellation of defect 43, euler #=-20 (130011,389565,259534) : difference with theory (-18) = 2 CORRECTING DEFECT 44 (vertices=15, convex hull=42) After retessellation of defect 44, euler #=-18 (130013,389584,259553) : difference with theory (-17) = 1 CORRECTING DEFECT 45 (vertices=19, convex hull=28) After retessellation of defect 45, euler #=-17 (130017,389602,259568) : difference with theory (-16) = 1 CORRECTING DEFECT 46 (vertices=29, convex hull=58) After retessellation of defect 46, euler #=-16 (130029,389659,259614) : difference with theory (-15) = 1 CORRECTING DEFECT 47 (vertices=23, convex hull=30) After retessellation of defect 47, euler #=-15 (130032,389678,259631) : difference with theory (-14) = 1 CORRECTING DEFECT 48 (vertices=27, convex hull=36) After retessellation of defect 48, euler #=-14 (130038,389710,259658) : difference with theory (-13) = 1 CORRECTING DEFECT 49 (vertices=30, convex hull=35) After retessellation of defect 49, euler #=-13 (130047,389748,259688) : difference with theory (-12) = 1 CORRECTING DEFECT 50 (vertices=7, convex hull=19) After retessellation of defect 50, euler #=-12 (130048,389758,259698) : difference with theory (-11) = 1 CORRECTING DEFECT 51 (vertices=8, convex hull=21) After retessellation of defect 51, euler #=-11 (130050,389772,259711) : difference with theory (-10) = 1 CORRECTING DEFECT 52 (vertices=44, convex hull=95) After retessellation of defect 52, euler #=-10 (130061,389845,259774) : difference with theory (-9) = 1 CORRECTING DEFECT 53 (vertices=265, convex hull=297) After retessellation of defect 53, euler #=-8 (130184,390381,260189) : difference with theory (-8) = 0 CORRECTING DEFECT 54 (vertices=93, convex hull=105) After retessellation of defect 54, euler #=-7 (130196,390461,260258) : difference with theory (-7) = 0 CORRECTING DEFECT 55 (vertices=62, convex hull=62) After retessellation of defect 55, euler #=-6 (130211,390535,260318) : difference with theory (-6) = 0 CORRECTING DEFECT 56 (vertices=27, convex hull=33) Warning - incorrect dp selected!!!!(-71.673738 >= -71.673741 ) After retessellation of defect 56, euler #=-5 (130214,390559,260340) : difference with theory (-5) = 0 CORRECTING DEFECT 57 (vertices=19, convex hull=19) After retessellation of defect 57, euler #=-4 (130217,390573,260352) : difference with theory (-4) = 0 CORRECTING DEFECT 58 (vertices=19, convex hull=22) After retessellation of defect 58, euler #=-3 (130220,390588,260365) : difference with theory (-3) = 0 CORRECTING DEFECT 59 (vertices=96, convex hull=25) After retessellation of defect 59, euler #=-2 (130224,390607,260381) : difference with theory (-2) = 0 CORRECTING DEFECT 60 (vertices=44, convex hull=30) After retessellation of defect 60, euler #=-1 (130229,390633,260403) : difference with theory (-1) = 0 CORRECTING DEFECT 61 (vertices=29, convex hull=61) Warning - incorrect dp selected!!!!(-68.760820 >= -68.760820 ) After retessellation of defect 61, euler #=0 (130246,390705,260459) : difference with theory (0) = 0 CORRECTING DEFECT 62 (vertices=22, convex hull=55) After retessellation of defect 62, euler #=1 (130252,390740,260489) : difference with theory (1) = 0 CORRECTING DEFECT 63 (vertices=16, convex hull=29) After retessellation of defect 63, euler #=2 (130255,390759,260506) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.88 +- 0.26 (0.03-->17.15) (max @ vno 107932 --> 132024) face area 0.00 +- 0.00 (0.00-->0.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.88 +- 0.26 (0.03-->17.15) (max @ vno 107932 --> 132024) face area 0.00 +- 0.00 (0.00-->0.00) tessellation finished, orienting corrected surface... 215 mutations (34.9%), 401 crossovers (65.1%), 270 vertices were eliminated building final representation... 4447 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=130255, nf=260506, ne=390759, g=0) writing corrected surface to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.orig... 0.000 % of the vertices (0 vertices) exhibit an orientation change topology fixing took 29.7 minutes 0 defective edges removing intersecting faces 000: 628 intersecting 001: 47 intersecting 002: 17 intersecting \n mris_euler_number ../surf/lh.orig \n euler # = v-e+f = 2g-2: 130255 - 390759 + 260506 = 2 --> 0 holes F =2V-4: 260506 = 260510-4 (0) 2E=3F: 781518 = 781518 (0) total defect index = 0 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_remove_intersection ../surf/lh.orig ../surf/lh.orig \n intersection removal took 0.00 hours removing intersecting faces 000: 226 intersecting 001: 23 intersecting 002: 14 intersecting writing corrected surface to ../surf/lh.orig \n rm ../surf/lh.inflated \n #-------------------------------------------- #@# Make White Surf lh Tue Dec 22 13:01:32 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_make_surfaces -noaparc -mgz -T1 brain.finalsurfs T40_OM_Post lh \n not using aparc to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/filled.mgz... reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/brain.finalsurfs.mgz... reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... 13615 bright wm thresholded. 2587 bright non-wm voxels segmented. reading original surface position from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.orig... computing class statistics... border white: 274904 voxels (1.64%) border gray 286178 voxels (1.71%) WM (98.0): 98.5 +- 6.4 [70.0 --> 110.0] GM (89.0) : 86.3 +- 11.8 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 71.2 (was 70) setting MAX_BORDER_WHITE to 109.4 (was 105) setting MIN_BORDER_WHITE to 83.0 (was 85) setting MAX_CSF to 59.4 (was 40) setting MAX_GRAY to 96.6 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 77.1 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 47.6 (was 40) repositioning cortical surface to gray/white boundary reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/aseg.mgz... smoothing T1 volume with sigma = 2.000 vertex spacing 0.81 +- 0.23 (0.03-->3.88) (max @ vno 128790 --> 128859) face area 0.28 +- 0.13 (0.00-->3.99) mean absolute distance = 0.92 +- 1.24 4965 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... smoothing contralateral hemisphere... using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=103, GM=83 mean inside = 97.3, mean outside = 84.5 smoothing surface for 5 iterations... inhibiting deformation at non-cortical midline structures... mean border=90.4, 169 (169) missing vertices, mean dist 0.1 [1.1 (%38.2)->0.8 (%61.8))] %31 local maxima, %64 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=MacBo, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.88 +- 0.27 (0.09-->4.20) (max @ vno 128790 --> 128859) face area 0.28 +- 0.14 (0.00-->3.46) mean absolute distance = 0.56 +- 0.93 5203 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3786819.8, rms=7.52 001: dt: 0.5000, sse=4743854.0, rms=5.231 (0.000%) 002: dt: 0.5000, sse=4830806.5, rms=3.803 (0.000%) 003: dt: 0.5000, sse=4996953.0, rms=2.978 (0.000%) 004: dt: 0.5000, sse=5073387.0, rms=2.562 (0.000%) 005: dt: 0.5000, sse=5131545.0, rms=2.336 (0.000%) 006: dt: 0.5000, sse=5146925.0, rms=2.236 (0.000%) 007: dt: 0.5000, sse=5200485.0, rms=2.171 (0.000%) rms = 2.13, time step reduction 1 of 3 to 0.250... 008: dt: 0.5000, sse=5189271.5, rms=2.132 (0.000%) 009: dt: 0.2500, sse=3798265.0, rms=1.744 (0.000%) 010: dt: 0.2500, sse=3643912.8, rms=1.683 (0.000%) rms = 1.67, time step reduction 2 of 3 to 0.125... 011: dt: 0.2500, sse=3589859.5, rms=1.672 (0.000%) rms = 1.65, time step reduction 3 of 3 to 0.062... 012: dt: 0.1250, sse=3552826.8, rms=1.654 (0.000%) positioning took 1.2 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group mean border=92.2, 185 (84) missing vertices, mean dist -0.3 [0.7 (%59.5)->0.3 (%40.5))] %48 local maxima, %47 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=MacBo, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.87 +- 0.26 (0.07-->4.15) (max @ vno 128790 --> 128859) face area 0.33 +- 0.17 (0.00-->4.09) mean absolute distance = 0.45 +- 0.58 4542 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3825196.8, rms=3.19 013: dt: 0.5000, sse=4127605.5, rms=2.119 (0.000%) 014: dt: 0.5000, sse=4548292.0, rms=1.807 (0.000%) 015: dt: 0.5000, sse=4552481.0, rms=1.736 (0.000%) rms = 1.73, time step reduction 1 of 3 to 0.250... 016: dt: 0.5000, sse=4842749.0, rms=1.727 (0.000%) 017: dt: 0.2500, sse=3934552.2, rms=1.431 (0.000%) rms = 1.40, time step reduction 2 of 3 to 0.125... 018: dt: 0.2500, sse=3809924.2, rms=1.395 (0.000%) rms = 1.38, time step reduction 3 of 3 to 0.062... 019: dt: 0.1250, sse=3768537.5, rms=1.385 (0.000%) positioning took 0.7 minutes inhibiting deformation at non-cortical midline structures... mean border=94.3, 163 (67) missing vertices, mean dist -0.3 [0.5 (%68.4)->0.3 (%31.6))] %70 local maxima, %25 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=MacBo, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.86 +- 0.26 (0.04-->4.05) (max @ vno 128790 --> 128859) face area 0.32 +- 0.17 (0.00-->3.93) mean absolute distance = 0.33 +- 0.44 4017 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3945057.5, rms=3.14 020: dt: 0.5000, sse=4098605.8, rms=1.830 (0.000%) 021: dt: 0.5000, sse=4568024.0, rms=1.587 (0.000%) rms = 1.59, time step reduction 1 of 3 to 0.250... 022: dt: 0.5000, sse=4548901.0, rms=1.587 (0.000%) 023: dt: 0.2500, sse=4038835.2, rms=1.299 (0.000%) rms = 1.27, time step reduction 2 of 3 to 0.125... 024: dt: 0.2500, sse=3900188.8, rms=1.270 (0.000%) rms = 1.26, time step reduction 3 of 3 to 0.062... 025: dt: 0.1250, sse=3863281.8, rms=1.260 (0.000%) positioning took 0.6 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group removing 4 vertex label from ripped group mean border=95.3, 183 (59) missing vertices, mean dist -0.1 [0.4 (%59.1)->0.3 (%40.9))] %79 local maxima, %15 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=MacBo, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing white matter surface to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white... writing smoothed curvature to lh.curv 000: dt: 0.0000, sse=3885646.2, rms=1.75 026: dt: 0.5000, sse=4693582.5, rms=1.143 (0.000%) rms = 1.37, time step reduction 1 of 3 to 0.250... 027: dt: 0.2500, sse=4380914.0, rms=1.035 (0.000%) rms = 1.04, time step reduction 2 of 3 to 0.125... rms = 1.02, time step reduction 3 of 3 to 0.062... 028: dt: 0.1250, sse=4344275.0, rms=1.025 (0.000%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... generating cortex label... 10 non-cortical segments detected only using segment with 1988 vertices erasing segment 1 (vno[0] = 82818) erasing segment 2 (vno[0] = 91992) erasing segment 3 (vno[0] = 94878) erasing segment 4 (vno[0] = 94889) erasing segment 5 (vno[0] = 98719) erasing segment 6 (vno[0] = 100234) erasing segment 7 (vno[0] = 100975) erasing segment 8 (vno[0] = 104813) erasing segment 9 (vno[0] = 106267) writing cortex label to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/lh.cortex.label... writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.curv writing smoothed area to lh.area writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.area vertex spacing 0.86 +- 0.27 (0.03-->4.01) (max @ vno 128790 --> 128859) face area 0.31 +- 0.16 (0.00-->3.89) repositioning cortical surface to gray/csf boundary. smoothing T1 volume with sigma = 2.000 averaging target values for 5 iterations... smoothing surface for 5 iterations... mean border=70.6, 199 (199) missing vertices, mean dist 2.1 [1.0 (%0.0)->2.4 (%100.0))] %42 local maxima, %40 large gradients and %13 min vals, 630 gradients ignored tol=1.0e-04, sigma=2.0, host=MacBo, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 1.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=18334484.0, rms=25.43 001: dt: 0.5000, sse=15429567.0, rms=22.991 (0.000%) 002: dt: 0.5000, sse=13018954.0, rms=20.769 (0.000%) 003: dt: 0.5000, sse=11192750.0, rms=18.822 (0.000%) 004: dt: 0.5000, sse=9991435.0, rms=17.085 (0.000%) 005: dt: 0.5000, sse=9116978.0, rms=15.474 (0.000%) 006: dt: 0.5000, sse=8427097.0, rms=13.930 (0.000%) 007: dt: 0.5000, sse=7773878.0, rms=12.356 (0.000%) 008: dt: 0.5000, sse=7282703.5, rms=10.770 (0.000%) 009: dt: 0.5000, sse=6876066.0, rms=9.220 (0.000%) 010: dt: 0.5000, sse=6666981.0, rms=7.837 (0.000%) 011: dt: 0.5000, sse=6570249.0, rms=6.721 (0.000%) 012: dt: 0.5000, sse=6601790.0, rms=5.970 (0.000%) 013: dt: 0.5000, sse=6647359.0, rms=5.510 (0.000%) 014: dt: 0.5000, sse=6692310.0, rms=5.229 (0.000%) 015: dt: 0.5000, sse=6728272.0, rms=5.021 (0.000%) 016: dt: 0.5000, sse=6731998.0, rms=4.890 (0.000%) 017: dt: 0.5000, sse=6751158.0, rms=4.782 (0.000%) 018: dt: 0.5000, sse=6745250.0, rms=4.708 (0.000%) 019: dt: 0.5000, sse=6792833.5, rms=4.655 (0.000%) rms = 4.62, time step reduction 1 of 3 to 0.250... 020: dt: 0.5000, sse=6781151.0, rms=4.615 (0.000%) 021: dt: 0.2500, sse=4303220.0, rms=3.424 (0.000%) 022: dt: 0.2500, sse=4003263.5, rms=3.065 (0.000%) 023: dt: 0.2500, sse=3822771.8, rms=2.991 (0.000%) rms = 2.94, time step reduction 2 of 3 to 0.125... 024: dt: 0.2500, sse=3768421.2, rms=2.943 (0.000%) 025: dt: 0.1250, sse=3509440.2, rms=2.682 (0.000%) rms = 2.65, time step reduction 3 of 3 to 0.062... 026: dt: 0.1250, sse=3473075.2, rms=2.647 (0.000%) positioning took 2.4 minutes mean border=67.2, 458 (21) missing vertices, mean dist 0.2 [0.2 (%34.1)->0.4 (%65.9))] %65 local maxima, %22 large gradients and % 8 min vals, 262 gradients ignored tol=1.0e-04, sigma=1.0, host=MacBo, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 averaging target values for 5 iterations... 000: dt: 0.0000, sse=4291629.5, rms=5.64 027: dt: 0.5000, sse=4585175.5, rms=4.566 (0.000%) rms = 4.64, time step reduction 1 of 3 to 0.250... 028: dt: 0.2500, sse=4090739.0, rms=3.543 (0.000%) 029: dt: 0.2500, sse=4036878.8, rms=3.143 (0.000%) 030: dt: 0.2500, sse=4002414.5, rms=3.004 (0.000%) rms = 2.97, time step reduction 2 of 3 to 0.125... 031: dt: 0.2500, sse=4011822.8, rms=2.965 (0.000%) 032: dt: 0.1250, sse=3789564.2, rms=2.692 (0.000%) rms = 2.64, time step reduction 3 of 3 to 0.062... 033: dt: 0.1250, sse=3758271.5, rms=2.642 (0.000%) positioning took 0.7 minutes mean border=65.5, 654 (17) missing vertices, mean dist 0.1 [0.2 (%36.5)->0.3 (%63.5))] %74 local maxima, %13 large gradients and % 8 min vals, 235 gradients ignored tol=1.0e-04, sigma=0.5, host=MacBo, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 averaging target values for 5 iterations... 000: dt: 0.0000, sse=3911348.0, rms=3.57 rms = 4.39, time step reduction 1 of 3 to 0.250... 034: dt: 0.2500, sse=3762001.5, rms=2.934 (0.000%) 035: dt: 0.2500, sse=3805281.8, rms=2.757 (0.000%) 036: dt: 0.2500, sse=3916329.5, rms=2.707 (0.000%) rms = 2.73, time step reduction 2 of 3 to 0.125... 037: dt: 0.1250, sse=3861505.5, rms=2.633 (0.000%) 038: dt: 0.1250, sse=3808713.5, rms=2.530 (0.000%) rms = 2.51, time step reduction 3 of 3 to 0.062... 039: dt: 0.1250, sse=3791734.2, rms=2.511 (0.000%) positioning took 0.7 minutes mean border=64.9, 1382 (15) missing vertices, mean dist 0.0 [0.2 (%46.0)->0.2 (%54.0))] %76 local maxima, %11 large gradients and % 8 min vals, 212 gradients ignored tol=1.0e-04, sigma=0.2, host=MacBo, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing pial surface to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.pial... writing smoothed curvature to lh.curv.pial 000: dt: 0.0000, sse=3806523.2, rms=2.65 rms = 3.51, time step reduction 1 of 3 to 0.250... 040: dt: 0.2500, sse=3756765.2, rms=2.439 (0.000%) rms = 2.41, time step reduction 2 of 3 to 0.125... 041: dt: 0.2500, sse=3886410.8, rms=2.409 (0.000%) 042: dt: 0.1250, sse=3814856.8, rms=2.337 (0.000%) rms = 2.30, time step reduction 3 of 3 to 0.062... 043: dt: 0.1250, sse=3824225.8, rms=2.303 (0.000%) positioning took 0.4 minutes writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.curv.pial writing smoothed area to lh.area.pial writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.area.pial vertex spacing 0.96 +- 0.40 (0.08-->6.34) (max @ vno 98838 --> 98855) face area 0.37 +- 0.28 (0.00-->5.60) measuring cortical thickness... writing cortical thickness estimate to 'thickness' file. 0 of 130255 vertices processed 25000 of 130255 vertices processed 50000 of 130255 vertices processed 75000 of 130255 vertices processed 100000 of 130255 vertices processed 125000 of 130255 vertices processed 0 of 130255 vertices processed 25000 of 130255 vertices processed 50000 of 130255 vertices processed 75000 of 130255 vertices processed 100000 of 130255 vertices processed 125000 of 130255 vertices processed thickness calculation complete, 83:542 truncations. 38493 vertices at 0 distance 93111 vertices at 1 distance 72941 vertices at 2 distance 30312 vertices at 3 distance 9820 vertices at 4 distance 2902 vertices at 5 distance 966 vertices at 6 distance 359 vertices at 7 distance 132 vertices at 8 distance 59 vertices at 9 distance 33 vertices at 10 distance 26 vertices at 11 distance 18 vertices at 12 distance 13 vertices at 13 distance 7 vertices at 14 distance 8 vertices at 15 distance 9 vertices at 16 distance 5 vertices at 17 distance 2 vertices at 18 distance 1 vertices at 19 distance 1 vertices at 20 distance writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.thickness positioning took 10.1 minutes #-------------------------------------------- #@# Smooth2 lh Tue Dec 22 13:11:38 EET 2015 \n mris_smooth -n 3 -nw ../surf/lh.white ../surf/lh.smoothwm \n /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts smoothing for 3 iterations smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation2 lh Tue Dec 22 13:11:43 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_inflate ../surf/lh.smoothwm ../surf/lh.inflated \n avg radius = 46.6 mm, total surface area = 73702 mm^2 writing inflated surface to ../surf/lh.inflated writing sulcal depths to ../surf/lh.sulc step 000: RMS=0.115 (target=0.015) step 005: RMS=0.082 (target=0.015) step 010: RMS=0.061 (target=0.015) step 015: RMS=0.050 (target=0.015) step 020: RMS=0.041 (target=0.015) step 025: RMS=0.035 (target=0.015) step 030: RMS=0.030 (target=0.015) step 035: RMS=0.026 (target=0.015) step 040: RMS=0.023 (target=0.015) step 045: RMS=0.021 (target=0.015) step 050: RMS=0.019 (target=0.015) step 055: RMS=0.017 (target=0.015) step 060: RMS=0.016 (target=0.015) inflation complete. inflation took 0.4 minutes \n mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 ../surf/lh.inflated \n normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 148 vertices thresholded to be in k1 ~ [-0.30 0.60], k2 ~ [-0.22 0.12] total integrated curvature = 0.527*4pi (6.621) --> 0 handles ICI = 1.4, FI = 8.7, variation=149.970 136 vertices thresholded to be in [-0.07 0.02] writing Gaussian curvature to ../surf/lh.inflated.K...thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.002 106 vertices thresholded to be in [-0.14 0.22] done. writing mean curvature to ../surf/lh.inflated.H...curvature mean = -0.017, std = 0.023 done. \n#----------------------------------------- #@# Curvature Stats lh Tue Dec 22 13:13:02 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf \n mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/lh.curv.stats -F smoothwm T40_OM_Post lh curv sulc \n Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/lh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ T40_OM_Post/lh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vertex faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 240 ] Gb_filter = 0 WARN: S lookup min: -0.447551 WARN: S explicit min: 0.000000 vertex = 218 #-------------------------------------------- #@# Tessellate rh Tue Dec 22 13:13:08 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mri_pretess ../mri/filled.mgz 127 ../mri/norm.mgz ../mri/filled-pretess127.mgz \n Iteration Number : 1 pass 1 (xy+): 1 found - 1 modified | TOTAL: 1 pass 2 (xy+): 0 found - 1 modified | TOTAL: 1 pass 1 (xy-): 0 found - 0 modified | TOTAL: 1 pass 1 (yz+): 1 found - 1 modified | TOTAL: 2 pass 2 (yz+): 0 found - 1 modified | TOTAL: 2 pass 1 (yz-): 0 found - 0 modified | TOTAL: 2 pass 1 (xz+): 1 found - 1 modified | TOTAL: 3 pass 2 (xz+): 0 found - 1 modified | TOTAL: 3 pass 1 (xz-): 0 found - 0 modified | TOTAL: 3 Iteration Number : 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 1 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 1 found - 1 modified | TOTAL: 1 pass 2 (+-): 0 found - 1 modified | TOTAL: 1 pass 1 (--): 0 found - 0 modified | TOTAL: 1 pass 1 (-+): 0 found - 0 modified | TOTAL: 1 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 4 (out of 277953: 0.001439) Ambiguous edge configurations... mri_pretess done \n mri_tessellate ../mri/filled-pretess127.mgz 127 ../surf/rh.orig.nofix \n $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ slice 40: 43 vertices, 56 faces slice 50: 3221 vertices, 3412 faces slice 60: 11468 vertices, 11798 faces slice 70: 22872 vertices, 23277 faces slice 80: 34386 vertices, 34758 faces slice 90: 45617 vertices, 45988 faces slice 100: 57173 vertices, 57538 faces slice 110: 68090 vertices, 68496 faces slice 120: 79592 vertices, 80008 faces slice 130: 91098 vertices, 91538 faces slice 140: 102486 vertices, 102951 faces slice 150: 111891 vertices, 112253 faces slice 160: 120223 vertices, 120579 faces slice 170: 127024 vertices, 127354 faces slice 180: 132268 vertices, 132567 faces slice 190: 135486 vertices, 135668 faces slice 200: 135632 vertices, 135770 faces slice 210: 135632 vertices, 135770 faces slice 220: 135632 vertices, 135770 faces slice 230: 135632 vertices, 135770 faces slice 240: 135632 vertices, 135770 faces slice 250: 135632 vertices, 135770 faces using the conformed surface RAS to save vertex points... writing ../surf/rh.orig.nofix using vox2ras matrix: -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; \n rm -f ../mri/filled-pretess127.mgz \n \n mris_extract_main_component ../surf/rh.orig.nofix ../surf/rh.orig.nofix \n counting number of connected components... 135632 voxel in cpt #1: X=-138 [v=135632,e=407310,f=271540] located at (29.725058, -18.280294, -0.531165) For the whole surface: X=-138 [v=135632,e=407310,f=271540] One single component has been found nothing to do done #-------------------------------------------- #@# Smooth1 rh Tue Dec 22 13:13:15 EET 2015 \n mris_smooth -nw ../surf/rh.orig.nofix ../surf/rh.smoothwm.nofix \n /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation1 rh Tue Dec 22 13:13:20 EET 2015 \n mris_inflate -no-save-sulc ../surf/rh.smoothwm.nofix ../surf/rh.inflated.nofix \n /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts avg radius = 46.0 mm, total surface area = 70068 mm^2 writing inflated surface to ../surf/rh.inflated.nofix inflation took 0.4 minutes Not saving sulc step 000: RMS=0.109 (target=0.015) step 005: RMS=0.082 (target=0.015) step 010: RMS=0.065 (target=0.015) step 015: RMS=0.058 (target=0.015) step 020: RMS=0.052 (target=0.015) step 025: RMS=0.047 (target=0.015) step 030: RMS=0.044 (target=0.015) step 035: RMS=0.042 (target=0.015) step 040: RMS=0.041 (target=0.015) step 045: RMS=0.040 (target=0.015) step 050: RMS=0.038 (target=0.015) step 055: RMS=0.037 (target=0.015) step 060: RMS=0.037 (target=0.015) inflation complete. Not saving sulc #-------------------------------------------- #@# QSphere rh Tue Dec 22 13:13:43 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_sphere -q ../surf/rh.inflated.nofix ../surf/rh.qsphere.nofix \n doing quick spherical unfolding. $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... vertex spacing 1.00 +- 0.57 (0.00-->6.29) (max @ vno 62377 --> 63338) face area 0.03 +- 0.04 (-0.08-->0.54) writing spherical brain to ../surf/rh.qsphere.nofix spherical transformation took 0.05 hours scaling brain by 0.344... inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=174.984, avgs=0 005/300: dt: 0.9000, rms radial error=174.726, avgs=0 010/300: dt: 0.9000, rms radial error=174.173, avgs=0 015/300: dt: 0.9000, rms radial error=173.448, avgs=0 020/300: dt: 0.9000, rms radial error=172.623, avgs=0 025/300: dt: 0.9000, rms radial error=171.742, avgs=0 030/300: dt: 0.9000, rms radial error=170.829, avgs=0 035/300: dt: 0.9000, rms radial error=169.901, avgs=0 040/300: dt: 0.9000, rms radial error=168.964, avgs=0 045/300: dt: 0.9000, rms radial error=168.026, avgs=0 050/300: dt: 0.9000, rms radial error=167.089, avgs=0 055/300: dt: 0.9000, rms radial error=166.156, avgs=0 060/300: dt: 0.9000, rms radial error=165.226, avgs=0 065/300: dt: 0.9000, rms radial error=164.300, avgs=0 070/300: dt: 0.9000, rms radial error=163.376, avgs=0 075/300: dt: 0.9000, rms radial error=162.457, avgs=0 080/300: dt: 0.9000, rms radial error=161.543, avgs=0 085/300: dt: 0.9000, rms radial error=160.635, avgs=0 090/300: dt: 0.9000, rms radial error=159.731, avgs=0 095/300: dt: 0.9000, rms radial error=158.832, avgs=0 100/300: dt: 0.9000, rms radial error=157.938, avgs=0 105/300: dt: 0.9000, rms radial error=157.049, avgs=0 110/300: dt: 0.9000, rms radial error=156.165, avgs=0 115/300: dt: 0.9000, rms radial error=155.285, avgs=0 120/300: dt: 0.9000, rms radial error=154.410, avgs=0 125/300: dt: 0.9000, rms radial error=153.539, avgs=0 130/300: dt: 0.9000, rms radial error=152.674, avgs=0 135/300: dt: 0.9000, rms radial error=151.813, avgs=0 140/300: dt: 0.9000, rms radial error=150.957, avgs=0 145/300: dt: 0.9000, rms radial error=150.106, avgs=0 150/300: dt: 0.9000, rms radial error=149.261, avgs=0 155/300: dt: 0.9000, rms radial error=148.420, avgs=0 160/300: dt: 0.9000, rms radial error=147.584, avgs=0 165/300: dt: 0.9000, rms radial error=146.753, avgs=0 170/300: dt: 0.9000, rms radial error=145.927, avgs=0 175/300: dt: 0.9000, rms radial error=145.105, avgs=0 180/300: dt: 0.9000, rms radial error=144.287, avgs=0 185/300: dt: 0.9000, rms radial error=143.475, avgs=0 190/300: dt: 0.9000, rms radial error=142.667, avgs=0 195/300: dt: 0.9000, rms radial error=141.864, avgs=0 200/300: dt: 0.9000, rms radial error=141.065, avgs=0 205/300: dt: 0.9000, rms radial error=140.270, avgs=0 210/300: dt: 0.9000, rms radial error=139.480, avgs=0 215/300: dt: 0.9000, rms radial error=138.694, avgs=0 220/300: dt: 0.9000, rms radial error=137.913, avgs=0 225/300: dt: 0.9000, rms radial error=137.135, avgs=0 230/300: dt: 0.9000, rms radial error=136.362, avgs=0 235/300: dt: 0.9000, rms radial error=135.594, avgs=0 240/300: dt: 0.9000, rms radial error=134.829, avgs=0 245/300: dt: 0.9000, rms radial error=134.069, avgs=0 250/300: dt: 0.9000, rms radial error=133.313, avgs=0 255/300: dt: 0.9000, rms radial error=132.562, avgs=0 260/300: dt: 0.9000, rms radial error=131.814, avgs=0 265/300: dt: 0.9000, rms radial error=131.071, avgs=0 270/300: dt: 0.9000, rms radial error=130.331, avgs=0 275/300: dt: 0.9000, rms radial error=129.596, avgs=0 280/300: dt: 0.9000, rms radial error=128.865, avgs=0 285/300: dt: 0.9000, rms radial error=128.138, avgs=0 290/300: dt: 0.9000, rms radial error=127.415, avgs=0 295/300: dt: 0.9000, rms radial error=126.696, avgs=0 300/300: dt: 0.9000, rms radial error=125.981, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 15364.20 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00009 epoch 2 (K=40.0), pass 1, starting sse = 2420.06 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00013 epoch 3 (K=160.0), pass 1, starting sse = 233.05 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.03/10 = 0.00301 epoch 4 (K=640.0), pass 1, starting sse = 19.76 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.06/12 = 0.00531 final distance error %100000.00 #-------------------------------------------- #@# Fix Topology rh Tue Dec 22 13:16:28 EET 2015 \n cp ../surf/rh.orig.nofix ../surf/rh.orig \n \n cp ../surf/rh.inflated.nofix ../surf/rh.inflated \n /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_fix_topology -mgz -sphere qsphere.nofix -ga T40_OM_Post rh \n reading spherical homeomorphism from 'qsphere.nofix' using genetic algorithm with optimized parameters ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ before topology correction, eno=-138 (nv=135632, nf=271540, ne=407310, g=70) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 11 iterations marking ambiguous vertices... 8038 ambiguous faces found in tessellation segmenting defects... 71 defects found, arbitrating ambiguous regions... analyzing neighboring defects... -merging segment 24 into 21 -merging segment 51 into 45 69 defects to be corrected 0 vertices coincident reading input surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Computing Initial Surface Statistics -face loglikelihood: -8.9628 (-4.4814) -vertex loglikelihood: -5.9727 (-2.9863) -normal dot loglikelihood: -3.5288 (-3.5288) -quad curv loglikelihood: -6.5971 (-3.2986) Total Loglikelihood : -25.0615 CORRECTING DEFECT 0 (vertices=41, convex hull=54) After retessellation of defect 0, euler #=-66 (130714,390132,259352) : difference with theory (-66) = 0 CORRECTING DEFECT 1 (vertices=60, convex hull=100) After retessellation of defect 1, euler #=-65 (130734,390235,259436) : difference with theory (-65) = 0 CORRECTING DEFECT 2 (vertices=167, convex hull=61) After retessellation of defect 2, euler #=-64 (130753,390319,259502) : difference with theory (-64) = 0 CORRECTING DEFECT 3 (vertices=6, convex hull=15) After retessellation of defect 3, euler #=-63 (130754,390326,259509) : difference with theory (-63) = 0 CORRECTING DEFECT 4 (vertices=51, convex hull=99) After retessellation of defect 4, euler #=-62 (130790,390480,259628) : difference with theory (-62) = 0 CORRECTING DEFECT 5 (vertices=28, convex hull=34) After retessellation of defect 5, euler #=-61 (130794,390504,259649) : difference with theory (-61) = 0 CORRECTING DEFECT 6 (vertices=22, convex hull=55) After retessellation of defect 6, euler #=-60 (130810,390576,259706) : difference with theory (-60) = 0 CORRECTING DEFECT 7 (vertices=48, convex hull=52) After retessellation of defect 7, euler #=-59 (130827,390647,259761) : difference with theory (-59) = 0 CORRECTING DEFECT 8 (vertices=50, convex hull=52) After retessellation of defect 8, euler #=-58 (130845,390719,259816) : difference with theory (-58) = 0 CORRECTING DEFECT 9 (vertices=17, convex hull=32) After retessellation of defect 9, euler #=-57 (130847,390735,259831) : difference with theory (-57) = 0 CORRECTING DEFECT 10 (vertices=43, convex hull=68) After retessellation of defect 10, euler #=-56 (130870,390828,259902) : difference with theory (-56) = 0 CORRECTING DEFECT 11 (vertices=24, convex hull=34) After retessellation of defect 11, euler #=-55 (130879,390866,259932) : difference with theory (-55) = 0 CORRECTING DEFECT 12 (vertices=65, convex hull=96) After retessellation of defect 12, euler #=-54 (130928,391057,260075) : difference with theory (-54) = 0 CORRECTING DEFECT 13 (vertices=71, convex hull=90) After retessellation of defect 13, euler #=-53 (130964,391202,260185) : difference with theory (-53) = 0 CORRECTING DEFECT 14 (vertices=37, convex hull=29) After retessellation of defect 14, euler #=-52 (130967,391221,260202) : difference with theory (-52) = 0 CORRECTING DEFECT 15 (vertices=37, convex hull=58) After retessellation of defect 15, euler #=-51 (130991,391317,260275) : difference with theory (-51) = 0 CORRECTING DEFECT 16 (vertices=242, convex hull=86) After retessellation of defect 16, euler #=-50 (131004,391396,260342) : difference with theory (-50) = 0 CORRECTING DEFECT 17 (vertices=30, convex hull=55) After retessellation of defect 17, euler #=-49 (131013,391444,260382) : difference with theory (-49) = 0 CORRECTING DEFECT 18 (vertices=25, convex hull=62) After retessellation of defect 18, euler #=-48 (131027,391511,260436) : difference with theory (-48) = 0 CORRECTING DEFECT 19 (vertices=104, convex hull=77) After retessellation of defect 19, euler #=-47 (131035,391574,260492) : difference with theory (-47) = 0 CORRECTING DEFECT 20 (vertices=43, convex hull=26) After retessellation of defect 20, euler #=-46 (131041,391598,260511) : difference with theory (-46) = 0 CORRECTING DEFECT 21 (vertices=278, convex hull=264) After retessellation of defect 21, euler #=-44 (131099,391899,260756) : difference with theory (-45) = -1 CORRECTING DEFECT 22 (vertices=77, convex hull=68) After retessellation of defect 22, euler #=-43 (131114,391976,260819) : difference with theory (-44) = -1 CORRECTING DEFECT 23 (vertices=26, convex hull=51) After retessellation of defect 23, euler #=-42 (131131,392048,260875) : difference with theory (-43) = -1 CORRECTING DEFECT 24 (vertices=55, convex hull=76) After retessellation of defect 24, euler #=-41 (131140,392106,260925) : difference with theory (-42) = -1 CORRECTING DEFECT 25 (vertices=31, convex hull=53) After retessellation of defect 25, euler #=-40 (131157,392179,260982) : difference with theory (-41) = -1 CORRECTING DEFECT 26 (vertices=98, convex hull=63) After retessellation of defect 26, euler #=-39 (131170,392244,261035) : difference with theory (-40) = -1 CORRECTING DEFECT 27 (vertices=8, convex hull=19) After retessellation of defect 27, euler #=-38 (131171,392253,261044) : difference with theory (-39) = -1 CORRECTING DEFECT 28 (vertices=124, convex hull=113) After retessellation of defect 28, euler #=-37 (131228,392474,261209) : difference with theory (-38) = -1 CORRECTING DEFECT 29 (vertices=139, convex hull=41) After retessellation of defect 29, euler #=-36 (131237,392523,261250) : difference with theory (-37) = -1 CORRECTING DEFECT 30 (vertices=27, convex hull=34) After retessellation of defect 30, euler #=-35 (131240,392545,261270) : difference with theory (-36) = -1 CORRECTING DEFECT 31 (vertices=43, convex hull=44) After retessellation of defect 31, euler #=-34 (131251,392591,261306) : difference with theory (-35) = -1 CORRECTING DEFECT 32 (vertices=15, convex hull=38) After retessellation of defect 32, euler #=-33 (131259,392627,261335) : difference with theory (-34) = -1 CORRECTING DEFECT 33 (vertices=18, convex hull=37) After retessellation of defect 33, euler #=-32 (131267,392662,261363) : difference with theory (-33) = -1 CORRECTING DEFECT 34 (vertices=110, convex hull=83) After retessellation of defect 34, euler #=-31 (131297,392790,261462) : difference with theory (-32) = -1 CORRECTING DEFECT 35 (vertices=17, convex hull=34) After retessellation of defect 35, euler #=-30 (131301,392812,261481) : difference with theory (-31) = -1 CORRECTING DEFECT 36 (vertices=336, convex hull=181) After retessellation of defect 36, euler #=-30 (131370,393122,261722) : difference with theory (-30) = 0 CORRECTING DEFECT 37 (vertices=12, convex hull=17) After retessellation of defect 37, euler #=-29 (131372,393134,261733) : difference with theory (-29) = 0 CORRECTING DEFECT 38 (vertices=40, convex hull=45) After retessellation of defect 38, euler #=-28 (131383,393184,261773) : difference with theory (-28) = 0 CORRECTING DEFECT 39 (vertices=368, convex hull=174) After retessellation of defect 39, euler #=-27 (131416,393365,261922) : difference with theory (-27) = 0 CORRECTING DEFECT 40 (vertices=24, convex hull=43) After retessellation of defect 40, euler #=-26 (131428,393415,261961) : difference with theory (-26) = 0 CORRECTING DEFECT 41 (vertices=88, convex hull=73) After retessellation of defect 41, euler #=-25 (131458,393539,262056) : difference with theory (-25) = 0 CORRECTING DEFECT 42 (vertices=199, convex hull=133) After retessellation of defect 42, euler #=-24 (131516,393775,262235) : difference with theory (-24) = 0 CORRECTING DEFECT 43 (vertices=565, convex hull=190) After retessellation of defect 43, euler #=-23 (131606,394142,262513) : difference with theory (-23) = 0 CORRECTING DEFECT 44 (vertices=124, convex hull=135) After retessellation of defect 44, euler #=-21 (131643,394324,262660) : difference with theory (-22) = -1 CORRECTING DEFECT 45 (vertices=69, convex hull=84) After retessellation of defect 45, euler #=-21 (131673,394455,262761) : difference with theory (-21) = 0 CORRECTING DEFECT 46 (vertices=13, convex hull=27) After retessellation of defect 46, euler #=-20 (131675,394467,262772) : difference with theory (-20) = 0 CORRECTING DEFECT 47 (vertices=62, convex hull=61) After retessellation of defect 47, euler #=-19 (131703,394578,262856) : difference with theory (-19) = 0 CORRECTING DEFECT 48 (vertices=14, convex hull=30) After retessellation of defect 48, euler #=-18 (131705,394593,262870) : difference with theory (-18) = 0 CORRECTING DEFECT 49 (vertices=8, convex hull=31) After retessellation of defect 49, euler #=-17 (131707,394605,262881) : difference with theory (-17) = 0 CORRECTING DEFECT 50 (vertices=34, convex hull=63) After retessellation of defect 50, euler #=-16 (131721,394675,262938) : difference with theory (-16) = 0 CORRECTING DEFECT 51 (vertices=129, convex hull=111) After retessellation of defect 51, euler #=-15 (131775,394894,263104) : difference with theory (-15) = 0 CORRECTING DEFECT 52 (vertices=41, convex hull=79) After retessellation of defect 52, euler #=-14 (131801,395001,263186) : difference with theory (-14) = 0 CORRECTING DEFECT 53 (vertices=10, convex hull=31) After retessellation of defect 53, euler #=-13 (131802,395013,263198) : difference with theory (-13) = 0 CORRECTING DEFECT 54 (vertices=75, convex hull=102) After retessellation of defect 54, euler #=-12 (131846,395189,263331) : difference with theory (-12) = 0 CORRECTING DEFECT 55 (vertices=42, convex hull=57) After retessellation of defect 55, euler #=-11 (131857,395246,263378) : difference with theory (-11) = 0 CORRECTING DEFECT 56 (vertices=7, convex hull=37) After retessellation of defect 56, euler #=-10 (131858,395261,263393) : difference with theory (-10) = 0 CORRECTING DEFECT 57 (vertices=20, convex hull=68) After retessellation of defect 57, euler #=-9 (131869,395323,263445) : difference with theory (-9) = 0 CORRECTING DEFECT 58 (vertices=64, convex hull=109) After retessellation of defect 58, euler #=-8 (131909,395489,263572) : difference with theory (-8) = 0 CORRECTING DEFECT 59 (vertices=38, convex hull=54) After retessellation of defect 59, euler #=-7 (131926,395560,263627) : difference with theory (-7) = 0 CORRECTING DEFECT 60 (vertices=26, convex hull=63) After retessellation of defect 60, euler #=-6 (131936,395613,263671) : difference with theory (-6) = 0 CORRECTING DEFECT 61 (vertices=31, convex hull=65) After retessellation of defect 61, euler #=-5 (131949,395675,263721) : difference with theory (-5) = 0 CORRECTING DEFECT 62 (vertices=45, convex hull=76) After retessellation of defect 62, euler #=-4 (131972,395775,263799) : difference with theory (-4) = 0 CORRECTING DEFECT 63 (vertices=26, convex hull=59) After retessellation of defect 63, euler #=-3 (131983,395832,263846) : difference with theory (-3) = 0 CORRECTING DEFECT 64 (vertices=55, convex hull=90) After retessellation of defect 64, euler #=-2 (131995,395904,263907) : difference with theory (-2) = 0 CORRECTING DEFECT 65 (vertices=24, convex hull=65) After retessellation of defect 65, euler #=-1 (132007,395963,263955) : difference with theory (-1) = 0 CORRECTING DEFECT 66 (vertices=25, convex hull=66) After retessellation of defect 66, euler #=0 (132019,396024,264005) : difference with theory (0) = 0 CORRECTING DEFECT 67 (vertices=20, convex hull=20) After retessellation of defect 67, euler #=1 (132023,396042,264020) : difference with theory (1) = 0 CORRECTING DEFECT 68 (vertices=23, convex hull=65) After retessellation of defect 68, euler #=2 (132032,396090,264060) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.88 +- 0.24 (0.10-->12.15) (max @ vno 110695 --> 115085) face area 0.00 +- 0.00 (0.00-->0.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.88 +- 0.24 (0.10-->12.15) (max @ vno 110695 --> 115085) face area 0.00 +- 0.00 (0.00-->0.00) tessellation finished, orienting corrected surface... 201 mutations (32.7%), 414 crossovers (67.3%), 292 vertices were eliminated building final representation... 3600 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=132032, nf=264060, ne=396090, g=0) writing corrected surface to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.orig... 0.000 % of the vertices (0 vertices) exhibit an orientation change topology fixing took 30.9 minutes 0 defective edges removing intersecting faces 000: 417 intersecting \n mris_euler_number ../surf/rh.orig \n euler # = v-e+f = 2g-2: 132032 - 396090 + 264060 = 2 --> 0 holes F =2V-4: 264060 = 264064-4 (0) 2E=3F: 792180 = 792180 (0) total defect index = 0 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_remove_intersection ../surf/rh.orig ../surf/rh.orig \n intersection removal took 0.00 hours removing intersecting faces 000: 53 intersecting writing corrected surface to ../surf/rh.orig \n rm ../surf/rh.inflated \n #-------------------------------------------- #@# Make White Surf rh Tue Dec 22 13:47:28 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_make_surfaces -noaparc -mgz -T1 brain.finalsurfs T40_OM_Post rh \n not using aparc to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/filled.mgz... reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/brain.finalsurfs.mgz... reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... 13350 bright wm thresholded. 2609 bright non-wm voxels segmented. reading original surface position from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.orig... computing class statistics... border white: 274904 voxels (1.64%) border gray 286178 voxels (1.71%) WM (98.0): 98.5 +- 6.5 [70.0 --> 110.0] GM (89.0) : 86.3 +- 11.6 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 71.4 (was 70) setting MAX_BORDER_WHITE to 109.5 (was 105) setting MIN_BORDER_WHITE to 83.0 (was 85) setting MAX_CSF to 59.9 (was 40) setting MAX_GRAY to 96.5 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 77.2 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 48.3 (was 40) repositioning cortical surface to gray/white boundary reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/aseg.mgz... smoothing T1 volume with sigma = 2.000 vertex spacing 0.81 +- 0.23 (0.01-->5.14) (max @ vno 110695 --> 115085) face area 0.27 +- 0.13 (0.00-->3.15) mean absolute distance = 0.92 +- 1.22 4838 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... smoothing contralateral hemisphere... using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=103, GM=83 mean inside = 97.4, mean outside = 84.7 smoothing surface for 5 iterations... inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group removing 2 vertex label from ripped group mean border=90.6, 103 (103) missing vertices, mean dist 0.1 [1.1 (%37.7)->0.8 (%62.3))] %35 local maxima, %60 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=MacBo, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.89 +- 0.26 (0.04-->4.79) (max @ vno 110695 --> 115085) face area 0.27 +- 0.14 (0.00-->2.36) mean absolute distance = 0.56 +- 0.90 5305 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3761300.2, rms=7.39 001: dt: 0.5000, sse=4732091.0, rms=5.085 (0.000%) 002: dt: 0.5000, sse=4847464.5, rms=3.626 (0.000%) 003: dt: 0.5000, sse=5034345.5, rms=2.811 (0.000%) 004: dt: 0.5000, sse=5144776.0, rms=2.409 (0.000%) 005: dt: 0.5000, sse=5184874.5, rms=2.215 (0.000%) 006: dt: 0.5000, sse=5218996.0, rms=2.126 (0.000%) rms = 2.08, time step reduction 1 of 3 to 0.250... 007: dt: 0.5000, sse=5240583.5, rms=2.078 (0.000%) 008: dt: 0.2500, sse=3810812.0, rms=1.702 (0.000%) 009: dt: 0.2500, sse=3679297.8, rms=1.644 (0.000%) rms = 1.64, time step reduction 2 of 3 to 0.125... 010: dt: 0.2500, sse=3630417.8, rms=1.636 (0.000%) rms = 1.62, time step reduction 3 of 3 to 0.062... 011: dt: 0.1250, sse=3592073.2, rms=1.623 (0.000%) positioning took 1.1 minutes inhibiting deformation at non-cortical midline structures... removing 2 vertex label from ripped group removing 2 vertex label from ripped group mean border=92.4, 121 (46) missing vertices, mean dist -0.3 [0.7 (%60.2)->0.3 (%39.8))] %50 local maxima, %44 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=MacBo, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.87 +- 0.26 (0.07-->4.75) (max @ vno 110695 --> 115085) face area 0.33 +- 0.16 (0.00-->3.01) mean absolute distance = 0.45 +- 0.59 4903 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3885181.5, rms=3.27 012: dt: 0.5000, sse=4211599.0, rms=2.166 (0.000%) 013: dt: 0.5000, sse=4647023.0, rms=1.819 (0.000%) 014: dt: 0.5000, sse=4630231.5, rms=1.743 (0.000%) rms = 1.73, time step reduction 1 of 3 to 0.250... 015: dt: 0.5000, sse=4969859.5, rms=1.732 (0.000%) 016: dt: 0.2500, sse=4025555.0, rms=1.438 (0.000%) rms = 1.40, time step reduction 2 of 3 to 0.125... 017: dt: 0.2500, sse=3898641.0, rms=1.403 (0.000%) rms = 1.39, time step reduction 3 of 3 to 0.062... 018: dt: 0.1250, sse=3854897.8, rms=1.392 (0.000%) positioning took 0.7 minutes inhibiting deformation at non-cortical midline structures... removing 2 vertex label from ripped group mean border=94.4, 126 (35) missing vertices, mean dist -0.3 [0.5 (%67.5)->0.3 (%32.5))] %71 local maxima, %24 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=MacBo, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.86 +- 0.26 (0.04-->4.57) (max @ vno 110695 --> 115085) face area 0.32 +- 0.16 (0.00-->2.95) mean absolute distance = 0.34 +- 0.45 4545 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=4021755.0, rms=3.05 019: dt: 0.5000, sse=4247410.0, rms=1.802 (0.000%) 020: dt: 0.5000, sse=4717153.5, rms=1.571 (0.000%) rms = 1.59, time step reduction 1 of 3 to 0.250... 021: dt: 0.2500, sse=4291654.0, rms=1.389 (0.000%) 022: dt: 0.2500, sse=4092475.8, rms=1.308 (0.000%) rms = 1.30, time step reduction 2 of 3 to 0.125... 023: dt: 0.2500, sse=4034302.0, rms=1.300 (0.000%) rms = 1.29, time step reduction 3 of 3 to 0.062... 024: dt: 0.1250, sse=4004432.8, rms=1.290 (0.000%) positioning took 0.7 minutes inhibiting deformation at non-cortical midline structures... removing 2 vertex label from ripped group removing 4 vertex label from ripped group removing 2 vertex label from ripped group mean border=95.3, 144 (21) missing vertices, mean dist -0.1 [0.4 (%59.1)->0.3 (%40.9))] %80 local maxima, %15 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=MacBo, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing white matter surface to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white... writing smoothed curvature to rh.curv 000: dt: 0.0000, sse=4027189.2, rms=1.76 025: dt: 0.5000, sse=4918418.0, rms=1.151 (0.000%) rms = 1.37, time step reduction 1 of 3 to 0.250... 026: dt: 0.2500, sse=4590218.5, rms=1.058 (0.000%) rms = 1.07, time step reduction 2 of 3 to 0.125... rms = 1.05, time step reduction 3 of 3 to 0.062... 027: dt: 0.1250, sse=4551428.0, rms=1.050 (0.000%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... generating cortex label... 22 non-cortical segments detected only using segment with 2096 vertices erasing segment 1 (vno[0] = 80633) erasing segment 2 (vno[0] = 80664) erasing segment 3 (vno[0] = 81950) erasing segment 4 (vno[0] = 86347) erasing segment 5 (vno[0] = 87538) erasing segment 6 (vno[0] = 91660) erasing segment 7 (vno[0] = 96791) erasing segment 8 (vno[0] = 96853) erasing segment 9 (vno[0] = 97039) erasing segment 10 (vno[0] = 97933) erasing segment 11 (vno[0] = 98930) erasing segment 12 (vno[0] = 100143) erasing segment 13 (vno[0] = 101247) erasing segment 14 (vno[0] = 101272) erasing segment 15 (vno[0] = 102201) erasing segment 16 (vno[0] = 102221) erasing segment 17 (vno[0] = 103979) erasing segment 18 (vno[0] = 105669) erasing segment 19 (vno[0] = 105754) erasing segment 20 (vno[0] = 106591) erasing segment 21 (vno[0] = 106619) writing cortex label to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/rh.cortex.label... writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.curv writing smoothed area to rh.area writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.area vertex spacing 0.86 +- 0.26 (0.06-->4.59) (max @ vno 110695 --> 115085) face area 0.31 +- 0.16 (0.00-->2.86) repositioning cortical surface to gray/csf boundary. smoothing T1 volume with sigma = 2.000 averaging target values for 5 iterations... smoothing surface for 5 iterations... mean border=71.0, 99 (99) missing vertices, mean dist 2.0 [0.1 (%0.0)->2.4 (%100.0))] %40 local maxima, %40 large gradients and %15 min vals, 651 gradients ignored tol=1.0e-04, sigma=2.0, host=MacBo, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 1.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=18142018.0, rms=25.09 001: dt: 0.5000, sse=15284871.0, rms=22.697 (0.000%) 002: dt: 0.5000, sse=12905612.0, rms=20.514 (0.000%) 003: dt: 0.5000, sse=11063507.0, rms=18.570 (0.000%) 004: dt: 0.5000, sse=9804029.0, rms=16.806 (0.000%) 005: dt: 0.5000, sse=8922666.0, rms=15.174 (0.000%) 006: dt: 0.5000, sse=8271805.0, rms=13.614 (0.000%) 007: dt: 0.5000, sse=7703876.0, rms=12.083 (0.000%) 008: dt: 0.5000, sse=7258818.5, rms=10.575 (0.000%) 009: dt: 0.5000, sse=6941928.0, rms=9.164 (0.000%) 010: dt: 0.5000, sse=6776005.5, rms=7.914 (0.000%) 011: dt: 0.5000, sse=6690780.0, rms=6.888 (0.000%) 012: dt: 0.5000, sse=6689643.5, rms=6.088 (0.000%) 013: dt: 0.5000, sse=6724780.0, rms=5.532 (0.000%) 014: dt: 0.5000, sse=6760881.5, rms=5.196 (0.000%) 015: dt: 0.5000, sse=6839860.5, rms=4.990 (0.000%) 016: dt: 0.5000, sse=6874600.5, rms=4.869 (0.000%) 017: dt: 0.5000, sse=6862539.0, rms=4.782 (0.000%) 018: dt: 0.5000, sse=6892215.5, rms=4.714 (0.000%) rms = 4.67, time step reduction 1 of 3 to 0.250... 019: dt: 0.5000, sse=6891349.0, rms=4.667 (0.000%) 020: dt: 0.2500, sse=4441176.5, rms=3.587 (0.000%) 021: dt: 0.2500, sse=4171056.0, rms=3.271 (0.000%) 022: dt: 0.2500, sse=3991204.2, rms=3.190 (0.000%) rms = 3.15, time step reduction 2 of 3 to 0.125... 023: dt: 0.2500, sse=3935512.5, rms=3.149 (0.000%) 024: dt: 0.1250, sse=3678800.2, rms=2.927 (0.000%) rms = 2.89, time step reduction 3 of 3 to 0.062... 025: dt: 0.1250, sse=3631419.0, rms=2.890 (0.000%) positioning took 2.4 minutes mean border=67.8, 733 (15) missing vertices, mean dist 0.2 [0.2 (%33.8)->0.4 (%66.2))] %62 local maxima, %22 large gradients and %11 min vals, 300 gradients ignored tol=1.0e-04, sigma=1.0, host=MacBo, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 averaging target values for 5 iterations... 000: dt: 0.0000, sse=4399107.5, rms=5.56 026: dt: 0.5000, sse=4624210.0, rms=4.577 (0.000%) rms = 4.66, time step reduction 1 of 3 to 0.250... 027: dt: 0.2500, sse=4174180.2, rms=3.639 (0.000%) 028: dt: 0.2500, sse=4217581.0, rms=3.280 (0.000%) 029: dt: 0.2500, sse=4159302.2, rms=3.118 (0.000%) 030: dt: 0.2500, sse=4193231.5, rms=3.065 (0.000%) 031: dt: 0.2500, sse=4168116.8, rms=3.005 (0.000%) rms = 2.99, time step reduction 2 of 3 to 0.125... 032: dt: 0.2500, sse=4199282.5, rms=2.986 (0.000%) 033: dt: 0.1250, sse=3965915.0, rms=2.712 (0.000%) 034: dt: 0.1250, sse=3933629.2, rms=2.659 (0.000%) rms = 2.65, time step reduction 3 of 3 to 0.062... 035: dt: 0.1250, sse=3912629.0, rms=2.647 (0.000%) positioning took 1.0 minutes mean border=66.2, 1028 (9) missing vertices, mean dist 0.1 [0.2 (%36.7)->0.3 (%63.3))] %71 local maxima, %13 large gradients and %10 min vals, 299 gradients ignored tol=1.0e-04, sigma=0.5, host=MacBo, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 averaging target values for 5 iterations... 000: dt: 0.0000, sse=4043844.2, rms=3.44 rms = 4.22, time step reduction 1 of 3 to 0.250... 036: dt: 0.2500, sse=3898743.8, rms=2.852 (0.000%) 037: dt: 0.2500, sse=3952907.5, rms=2.692 (0.000%) rms = 2.65, time step reduction 2 of 3 to 0.125... 038: dt: 0.2500, sse=4075185.0, rms=2.655 (0.000%) 039: dt: 0.1250, sse=3951417.8, rms=2.487 (0.000%) rms = 2.45, time step reduction 3 of 3 to 0.062... 040: dt: 0.1250, sse=3944168.5, rms=2.450 (0.000%) positioning took 0.5 minutes mean border=65.6, 1652 (9) missing vertices, mean dist 0.0 [0.2 (%45.7)->0.2 (%54.3))] %73 local maxima, %11 large gradients and %10 min vals, 314 gradients ignored tol=1.0e-04, sigma=0.2, host=MacBo, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing pial surface to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.pial... writing smoothed curvature to rh.curv.pial 000: dt: 0.0000, sse=3961001.8, rms=2.60 rms = 3.42, time step reduction 1 of 3 to 0.250... 041: dt: 0.2500, sse=3911693.2, rms=2.410 (0.000%) rms = 2.39, time step reduction 2 of 3 to 0.125... 042: dt: 0.2500, sse=4058589.2, rms=2.386 (0.000%) 043: dt: 0.1250, sse=3980213.2, rms=2.302 (0.000%) rms = 2.27, time step reduction 3 of 3 to 0.062... 044: dt: 0.1250, sse=3990623.0, rms=2.269 (0.000%) positioning took 0.4 minutes writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.curv.pial writing smoothed area to rh.area.pial writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.area.pial vertex spacing 0.96 +- 0.40 (0.08-->7.23) (max @ vno 102420 --> 101480) face area 0.37 +- 0.28 (0.00-->7.66) measuring cortical thickness... writing cortical thickness estimate to 'thickness' file. 0 of 132032 vertices processed 25000 of 132032 vertices processed 50000 of 132032 vertices processed 75000 of 132032 vertices processed 100000 of 132032 vertices processed 125000 of 132032 vertices processed 0 of 132032 vertices processed 25000 of 132032 vertices processed 50000 of 132032 vertices processed 75000 of 132032 vertices processed 100000 of 132032 vertices processed 125000 of 132032 vertices processed thickness calculation complete, 233:1007 truncations. 37615 vertices at 0 distance 94437 vertices at 1 distance 73611 vertices at 2 distance 31665 vertices at 3 distance 10244 vertices at 4 distance 2819 vertices at 5 distance 939 vertices at 6 distance 315 vertices at 7 distance 155 vertices at 8 distance 78 vertices at 9 distance 34 vertices at 10 distance 29 vertices at 11 distance 21 vertices at 12 distance 17 vertices at 13 distance 7 vertices at 14 distance 10 vertices at 15 distance 10 vertices at 16 distance 4 vertices at 17 distance 10 vertices at 18 distance 6 vertices at 19 distance 6 vertices at 20 distance writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.thickness positioning took 10.3 minutes #-------------------------------------------- #@# Smooth2 rh Tue Dec 22 13:57:47 EET 2015 \n mris_smooth -n 3 -nw ../surf/rh.white ../surf/rh.smoothwm \n /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts smoothing for 3 iterations smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation2 rh Tue Dec 22 13:57:52 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_inflate ../surf/rh.smoothwm ../surf/rh.inflated \n avg radius = 46.0 mm, total surface area = 74959 mm^2 writing inflated surface to ../surf/rh.inflated writing sulcal depths to ../surf/rh.sulc step 000: RMS=0.116 (target=0.015) step 005: RMS=0.081 (target=0.015) step 010: RMS=0.062 (target=0.015) step 015: RMS=0.051 (target=0.015) step 020: RMS=0.043 (target=0.015) step 025: RMS=0.036 (target=0.015) step 030: RMS=0.031 (target=0.015) step 035: RMS=0.027 (target=0.015) step 040: RMS=0.024 (target=0.015) step 045: RMS=0.022 (target=0.015) step 050: RMS=0.019 (target=0.015) step 055: RMS=0.018 (target=0.015) step 060: RMS=0.017 (target=0.015) inflation complete. inflation took 0.4 minutes \n mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 ../surf/rh.inflated \n normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 144 vertices thresholded to be in k1 ~ [-0.29 0.45], k2 ~ [-0.11 0.07] total integrated curvature = 0.545*4pi (6.850) --> 0 handles ICI = 1.5, FI = 9.2, variation=157.527 113 vertices thresholded to be in [-0.02 0.01] writing Gaussian curvature to ../surf/rh.inflated.K...thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.001 124 vertices thresholded to be in [-0.15 0.21] done. writing mean curvature to ../surf/rh.inflated.H...curvature mean = -0.017, std = 0.024 done. \n#----------------------------------------- #@# Curvature Stats rh Tue Dec 22 13:59:12 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf \n mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/rh.curv.stats -F smoothwm T40_OM_Post rh curv sulc \n Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/rh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ T40_OM_Post/rh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vertex faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 262 ] Gb_filter = 0 WARN: S lookup min: -0.334158 WARN: S explicit min: 0.000000 vertex = 790 #-------------------------------------------- #@# ASeg Stats Tue Dec 22 13:59:18 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post \n mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /Applications/freesurfer/ASegStatsLUT.txt --subject T40_OM_Post \n $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /Applications/freesurfer/ASegStatsLUT.txt --subject T40_OM_Post sysname Darwin hostname MacBook-Pro-di-Marco.local machine x86_64 user marco UseRobust 0 atlas_icv (eTIV) = 1401408 mm^3 (det: 1.390106 ) Computing euler number orig.nofix lheno = -128, rheno = -138 orig.nofix lhholes = 65, rhholes = 70 Loading mri/aseg.mgz Getting Brain Volume Statistics lhCtxGM: 193757.762 193146.000 diff= 611.8 pctdiff= 0.316 rhCtxGM: 198124.261 197704.000 diff= 420.3 pctdiff= 0.212 lhCtxWM: 211727.822 212352.500 diff= -624.7 pctdiff=-0.295 rhCtxWM: 218493.666 219015.500 diff= -521.8 pctdiff=-0.239 SubCortGMVol 48844.000 SupraTentVol 910587.511 (909567.000) diff=1020.511 pctdiff=0.112 SupraTentVolNotVent 872320.511 (871300.000) diff=1020.511 pctdiff=0.117 BrainSegVol 1027879.000 (1024101.000) diff=3778.000 pctdiff=0.368 BrainSegVolNotVent 984719.000 (984298.511) diff=420.489 pctdiff=0.043 BrainSegVolNotVent 984719.000 CerebellumVol 113113.000 VentChorVol 38267.000 3rd4th5thCSF 4893.000 CSFVol 1150.000, OptChiasmVol 271.000 MaskVol 1513194.000 Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 50 segmentations Computing statistics for each segmentation 3 4 Left-Lateral-Ventricle 16631 16631.000 4 5 Left-Inf-Lat-Vent 861 860.718 5 7 Left-Cerebellum-White-Matter 10215 10215.142 6 8 Left-Cerebellum-Cortex 46299 46298.945 7 10 Left-Thalamus-Proper 7112 7112.239 8 11 Left-Caudate 3697 3696.532 9 12 Left-Putamen 3842 3842.026 10 13 Left-Pallidum 1353 1352.807 11 14 3rd-Ventricle 1542 1542.378 12 15 4th-Ventricle 2361 2361.099 13 16 Brain-Stem 18770 18770.141 14 17 Left-Hippocampus 3705 3705.158 15 18 Left-Amygdala 1281 1280.841 16 24 CSF 1081 1081.099 17 26 Left-Accumbens-area 427 427.313 18 28 Left-VentralDC 3172 3172.460 19 30 Left-vessel 167 167.096 20 31 Left-choroid-plexus 1898 1897.961 23 43 Right-Lateral-Ventricle 16110 16109.813 24 44 Right-Inf-Lat-Vent 489 488.676 25 46 Right-Cerebellum-White-Matter 10449 10449.361 26 47 Right-Cerebellum-Cortex 47697 47696.559 27 49 Right-Thalamus-Proper 5853 5853.278 28 50 Right-Caudate 3384 3384.291 29 51 Right-Putamen 3677 3677.215 30 52 Right-Pallidum 1359 1359.228 31 53 Right-Hippocampus 3743 3742.920 32 54 Right-Amygdala 1277 1276.785 33 58 Right-Accumbens-area 349 349.172 34 60 Right-VentralDC 3368 3367.892 35 62 Right-vessel 110 109.809 36 63 Right-choroid-plexus 2184 2184.151 37 72 5th-Ventricle 0 0.000 38 77 WM-hypointensities 1508 1508.348 39 78 Left-WM-hypointensities 0 0.000 40 79 Right-WM-hypointensities 0 0.000 41 80 non-WM-hypointensities 30 30.302 42 81 Left-non-WM-hypointensities 0 0.000 43 82 Right-non-WM-hypointensities 0 0.000 44 85 Optic-Chiasm 243 242.805 45 251 CC_Posterior 989 988.787 46 252 CC_Mid_Posterior 304 303.817 47 253 CC_Central 333 332.722 48 254 CC_Mid_Anterior 373 373.279 49 255 CC_Anterior 650 650.473 Reporting on 45 segmentations mri_segstats done #------------------------------------------ Started at Tue Dec 22 12:21:18 EET 2015 Ended at Tue Dec 22 14:03:19 EET 2015 #@#%# recon-all-run-time-hours 1.700 recon-all -s T40_OM_Post finished without error at Tue Dec 22 14:03:20 EET 2015 \n\n New invocation of recon-all \n\n Tue Dec 22 14:03:20 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post /Applications/freesurfer/bin/recon-all -autorecon3 -s T40_OM_Post subjid T40_OM_Post setenv SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Actual FREESURFER_HOME /Applications/freesurfer build-stamp.txt: freesurfer-Darwin-lion-stable-pub-v5.3.0 Darwin MacBook-Pro-di-Marco.local 13.3.0 Darwin Kernel Version 13.3.0: Tue Jun 3 21:27:35 PDT 2014; root:xnu-2422.110.17~1/RELEASE_X86_64 x86_64 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 709 PhysMem: 4080M used (1373M wired), 2711M unused. ######################################## program versions used $Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 nicks Exp $ $Id: mri_motion_correct.fsl,v 1.14 2011/03/02 20:16:39 nicks Exp $ mri_convert -all-info ProgramName: mri_convert ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 FLIRT version 5.5 $Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks Exp $ mri_convert --version stable5 ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 Program nu_correct, built from: Package MNI N3, version 1.10, compiled by nicks@aspasia.local (i686-apple-darwin10.2.0) on 2010-02-26 at 14:19:30 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_normalize.c,v 1.73.2.1 2012/10/17 19:11:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_watershed.cpp,v 1.96.2.1 2011/11/08 22:18:44 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_segment.c,v 1.40 2011/03/02 00:04:24 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_label2label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_label2label.c,v 1.40.2.2 2013/04/02 16:26:15 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_em_register.c,v 1.84.2.3 2013/02/09 00:49:26 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_normalize.c,v 1.52.2.2 2012/10/17 19:11:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_register.c,v 1.78.2.3 2013/02/09 00:42:20 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_label.c,v 1.96.2.1 2012/08/28 22:11:20 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_pretess.c,v 1.20 2011/03/02 00:04:23 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_fill.c,v 1.118 2011/03/16 21:23:49 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_concatenate_lta ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_concatenate_lta.c,v 1.10 2011/03/16 21:23:48 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_smooth.c,v 1.28 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_inflate.c,v 1.43 2011/03/02 00:04:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_euler_number.c,v 1.8.2.2 2013/01/14 22:40:07 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_volmask.cpp,v 1.25 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_anatomical_stats.c,v 1.72 2011/03/02 00:04:26 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mrisp_paint.c,v 1.11 2011/03/02 00:04:35 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_curvature_stats.c,v 1.64 2011/03/02 00:04:30 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_calc.c,v 1.37.2.8 2013/01/28 17:05:17 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ ProgramName: mri_robust_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:22-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:22-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:22-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_or.c,v 1.3 2011/03/02 00:04:13 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:22-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-12:03:22-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ####################################### GCADIR /Applications/freesurfer/average GCA RB_all_2008-03-26.gca GCASkull RB_all_withskull_2008-03-26.gca AvgCurvTif average.curvature.filled.buckner40.tif GCSDIR /Applications/freesurfer/average GCS curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ####################################### INFO: current FREESURFER_HOME does not match that of previous processing. Current: /Applications/freesurfer Previous: /cdrom/Marco/freesurfer \n#----------------------------------------- #@# Curvature Stats lh Tue Dec 22 14:03:23 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf \n mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/lh.curv.stats -F smoothwm T40_OM_Post lh curv sulc \n Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/lh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ T40_OM_Post/lh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vertex faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 240 ] Gb_filter = 0 WARN: S lookup min: -0.447551 WARN: S explicit min: 0.000000 vertex = 218 #-------------------------------------------- #@# Sphere lh Tue Dec 22 14:03:28 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_sphere -seed 1234 ../surf/lh.inflated ../surf/lh.sphere \n setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... scaling brain by 0.330... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=MacBo, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 1234 -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %19.63 pass 1: epoch 2 of 3 starting distance error %19.60 unfolding complete - removing small folds... starting distance error %19.49 removing remaining folds... final distance error %19.51 MRISunfold() return, current seed 1234 writing spherical brain to ../surf/lh.sphere spherical transformation took 0.48 hours #-------------------------------------------- #@# Surf Reg lh Tue Dec 22 14:32:20 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_register -curv ../surf/lh.sphere /Applications/freesurfer/average/lh.average.curvature.filled.buckner40.tif ../surf/lh.sphere.reg \n using smoothwm curvature for final alignment $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading surface from ../surf/lh.sphere... reading template parameterization from /Applications/freesurfer/average/lh.average.curvature.filled.buckner40.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=MacBo, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 0 randomSeed 0 tol=5.0e-01, sigma=0.0, host=MacBo, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading lh.sulc curvature mean = 0.000, std = 0.589 curvature mean = 0.026, std = 0.936 curvature mean = 0.030, std = 0.873 Starting MRISrigidBodyAlignGlobal() d=64.00 min @ (0.00, -16.00, 0.00) sse = 291231.8, tmin=0.6336 d=32.00 min @ (8.00, 8.00, 0.00) sse = 207930.4, tmin=1.2726 d=16.00 min @ (0.00, 0.00, -4.00) sse = 183496.6, tmin=1.9191 d=8.00 min @ (-2.00, 0.00, 0.00) sse = 181484.8, tmin=2.5748 d=4.00 min @ (1.00, 0.00, 0.00) sse = 180136.3, tmin=3.2366 d=2.00 min @ (-0.50, -0.50, 0.00) sse = 179325.1, tmin=3.9041 d=1.00 min @ (0.00, 0.00, 0.25) sse = 179249.4, tmin=4.5723 d=0.50 min @ (0.12, -0.12, 0.00) sse = 179204.7, tmin=5.2489 tol=1.0e+00, sigma=0.5, host=MacBo, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization MRISrigidBodyAlignGlobal() done 5.25 min curvature mean = -0.011, std = 0.961 curvature mean = 0.011, std = 0.948 curvature mean = -0.016, std = 0.972 curvature mean = 0.004, std = 0.977 curvature mean = -0.018, std = 0.975 curvature mean = 0.001, std = 0.990 2 Reading smoothwm curvature mean = -0.039, std = 0.312 curvature mean = 0.002, std = 0.067 curvature mean = 0.079, std = 0.322 curvature mean = 0.002, std = 0.079 curvature mean = 0.041, std = 0.506 curvature mean = 0.002, std = 0.085 curvature mean = 0.024, std = 0.642 curvature mean = 0.001, std = 0.088 curvature mean = 0.009, std = 0.751 MRISregister() return, current seed 0 writing registered surface to ../surf/lh.sphere.reg... expanding nbhd size to 1 #-------------------------------------------- #@# Jacobian white lh Tue Dec 22 14:47:40 EET 2015 \n mris_jacobian ../surf/lh.white ../surf/lh.sphere.reg ../surf/lh.jacobian_white \n reading surface from ../surf/lh.white... writing curvature file ../surf/lh.jacobian_white #-------------------------------------------- #@# AvgCurv lh Tue Dec 22 14:47:42 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mrisp_paint -a 5 /Applications/freesurfer/average/lh.average.curvature.filled.buckner40.tif#6 ../surf/lh.sphere.reg ../surf/lh.avg_curv \n averaging curvature patterns 5 times... reading surface from ../surf/lh.sphere.reg... reading template parameterization from /Applications/freesurfer/average/lh.average.curvature.filled.buckner40.tif... writing curvature file to ../surf/lh.avg_curv... #----------------------------------------- #@# Cortical Parc lh Tue Dec 22 14:47:44 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 T40_OM_Post lh ../surf/lh.sphere.reg /Applications/freesurfer/average/lh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ../label/lh.aparc.annot \n setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading atlas from /Applications/freesurfer/average/lh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs... reading color table from GCSA file.... average std = 1.0 using min determinant for regularization = 0.011 0 singular and 384 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 1241 labels changed using aseg relabeling using gibbs priors... 000: 2889 changed, 130255 examined... 001: 652 changed, 12240 examined... 002: 150 changed, 3596 examined... 003: 54 changed, 912 examined... 004: 31 changed, 319 examined... 005: 10 changed, 176 examined... 006: 6 changed, 60 examined... 007: 0 changed, 32 examined... 241 labels changed using aseg 000: 112 total segments, 68 labels (297 vertices) changed 001: 44 total segments, 3 labels (15 vertices) changed 002: 41 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 28 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1248 vertices marked for relabeling... 1248 labels changed in reclassification. writing output to ../label/lh.aparc.annot... classification took 0 minutes and 39 seconds. #-------------------------------------------- #@# Make Pial Surf lh Tue Dec 22 14:48:23 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_make_surfaces -white NOWRITE -mgz -T1 brain.finalsurfs T40_OM_Post lh \n -white NOWRITE indicates that white, curv, area, and cortex.label files will not be written... INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/filled.mgz... reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/brain.finalsurfs.mgz... reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... 13615 bright wm thresholded. 2587 bright non-wm voxels segmented. reading original surface position from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.orig... computing class statistics... border white: 274904 voxels (1.64%) border gray 286178 voxels (1.71%) WM (98.0): 98.5 +- 6.4 [70.0 --> 110.0] GM (89.0) : 86.3 +- 11.8 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 71.2 (was 70) setting MAX_BORDER_WHITE to 109.4 (was 105) setting MIN_BORDER_WHITE to 83.0 (was 85) setting MAX_CSF to 59.4 (was 40) setting MAX_GRAY to 96.6 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 77.1 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 47.6 (was 40) smoothing contralateral hemisphere... using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=103, GM=83 mean inside = 97.3, mean outside = 84.5 smoothing surface for 5 iterations... reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) repositioning cortical surface to gray/white boundary reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/aseg.mgz... smoothing T1 volume with sigma = 2.000 vertex spacing 0.81 +- 0.23 (0.03-->3.88) (max @ vno 128790 --> 128859) face area 0.28 +- 0.13 (0.00-->3.99) mean absolute distance = 0.93 +- 1.24 5102 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... deleting segment 1 with 603 points - only 0.00% unknown mean border=90.4, 170 (170) missing vertices, mean dist 0.1 [1.1 (%38.2)->0.8 (%61.8))] %31 local maxima, %64 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=MacBo, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.88 +- 0.27 (0.09-->4.20) (max @ vno 128790 --> 128859) face area 0.28 +- 0.14 (0.00-->3.46) mean absolute distance = 0.56 +- 0.93 5213 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3801789.0, rms=7.51 001: dt: 0.5000, sse=4770085.0, rms=5.236 (0.000%) 002: dt: 0.5000, sse=4861116.5, rms=3.816 (0.000%) 003: dt: 0.5000, sse=5028480.5, rms=2.998 (0.000%) 004: dt: 0.5000, sse=5104222.5, rms=2.586 (0.000%) 005: dt: 0.5000, sse=5164929.5, rms=2.361 (0.000%) 006: dt: 0.5000, sse=5178595.5, rms=2.259 (0.000%) 007: dt: 0.5000, sse=5232205.0, rms=2.192 (0.000%) rms = 2.15, time step reduction 1 of 3 to 0.250... 008: dt: 0.5000, sse=5223260.5, rms=2.152 (0.000%) 009: dt: 0.2500, sse=3828623.8, rms=1.769 (0.000%) 010: dt: 0.2500, sse=3674775.8, rms=1.709 (0.000%) rms = 1.70, time step reduction 2 of 3 to 0.125... 011: dt: 0.2500, sse=3621894.2, rms=1.698 (0.000%) rms = 1.68, time step reduction 3 of 3 to 0.062... 012: dt: 0.1250, sse=3586051.0, rms=1.679 (0.000%) positioning took 1.2 minutes inhibiting deformation at non-cortical midline structures... deleting segment 2 with 494 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 3 with 3 points - only 33.33% unknown deleting segment 7 with 6 points - only 0.00% unknown mean border=92.1, 201 (84) missing vertices, mean dist -0.3 [0.7 (%59.5)->0.3 (%40.5))] %48 local maxima, %47 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=MacBo, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.87 +- 0.26 (0.07-->4.15) (max @ vno 128790 --> 128859) face area 0.33 +- 0.17 (0.00-->4.09) mean absolute distance = 0.45 +- 0.58 4560 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3859382.2, rms=3.20 013: dt: 0.5000, sse=4164278.5, rms=2.129 (0.000%) 014: dt: 0.5000, sse=4584642.5, rms=1.819 (0.000%) 015: dt: 0.5000, sse=4583570.5, rms=1.748 (0.000%) rms = 1.74, time step reduction 1 of 3 to 0.250... 016: dt: 0.5000, sse=4878544.0, rms=1.738 (0.000%) 017: dt: 0.2500, sse=3962426.0, rms=1.444 (0.000%) rms = 1.41, time step reduction 2 of 3 to 0.125... 018: dt: 0.2500, sse=3839326.2, rms=1.408 (0.000%) rms = 1.40, time step reduction 3 of 3 to 0.062... 019: dt: 0.1250, sse=3797347.5, rms=1.397 (0.000%) positioning took 0.7 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 351 points - only 0.00% unknown deleting segment 1 with 164 points - only 0.00% unknown deleting segment 2 with 5 points - only 20.00% unknown removing 3 vertex label from ripped group deleting segment 3 with 3 points - only 0.00% unknown mean border=94.3, 198 (67) missing vertices, mean dist -0.3 [0.5 (%68.3)->0.3 (%31.7))] %70 local maxima, %25 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=MacBo, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.86 +- 0.26 (0.04-->4.05) (max @ vno 128790 --> 128859) face area 0.32 +- 0.16 (0.00-->3.93) mean absolute distance = 0.33 +- 0.44 4032 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3975178.2, rms=3.14 020: dt: 0.5000, sse=4126992.8, rms=1.838 (0.000%) 021: dt: 0.5000, sse=4599023.5, rms=1.593 (0.000%) rms = 1.59, time step reduction 1 of 3 to 0.250... 022: dt: 0.5000, sse=4580381.0, rms=1.592 (0.000%) 023: dt: 0.2500, sse=4066495.8, rms=1.305 (0.000%) rms = 1.28, time step reduction 2 of 3 to 0.125... 024: dt: 0.2500, sse=3926862.0, rms=1.276 (0.000%) rms = 1.27, time step reduction 3 of 3 to 0.062... 025: dt: 0.1250, sse=3888409.2, rms=1.267 (0.000%) positioning took 0.6 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 366 points - only 0.00% unknown deleting segment 1 with 189 points - only 0.00% unknown removing 4 vertex label from ripped group deleting segment 3 with 6 points - only 0.00% unknown mean border=95.2, 230 (59) missing vertices, mean dist -0.1 [0.4 (%59.1)->0.3 (%40.9))] %80 local maxima, %15 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=MacBo, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 repositioning cortical surface to gray/csf boundary. smoothing T1 volume with sigma = 2.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=3911434.2, rms=1.76 026: dt: 0.5000, sse=4724635.5, rms=1.149 (0.000%) rms = 1.38, time step reduction 1 of 3 to 0.250... 027: dt: 0.2500, sse=4414346.5, rms=1.041 (0.000%) rms = 1.05, time step reduction 2 of 3 to 0.125... rms = 1.03, time step reduction 3 of 3 to 0.062... 028: dt: 0.1250, sse=4375270.5, rms=1.031 (0.000%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... deleting segment 1 with 39 points - only 0.00% unknown smoothing surface for 5 iterations... mean border=70.6, 227 (227) missing vertices, mean dist 2.1 [1.2 (%0.0)->2.4 (%100.0))] %42 local maxima, %40 large gradients and %13 min vals, 631 gradients ignored tol=1.0e-04, sigma=2.0, host=MacBo, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 1.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=18322184.0, rms=25.43 001: dt: 0.5000, sse=15417631.0, rms=22.982 (0.000%) 002: dt: 0.5000, sse=13007270.0, rms=20.759 (0.000%) 003: dt: 0.5000, sse=11184568.0, rms=18.812 (0.000%) 004: dt: 0.5000, sse=9978717.0, rms=17.077 (0.000%) 005: dt: 0.5000, sse=9105803.0, rms=15.468 (0.000%) 006: dt: 0.5000, sse=8413193.0, rms=13.925 (0.000%) 007: dt: 0.5000, sse=7763374.0, rms=12.351 (0.000%) 008: dt: 0.5000, sse=7267969.0, rms=10.763 (0.000%) 009: dt: 0.5000, sse=6863253.5, rms=9.209 (0.000%) 010: dt: 0.5000, sse=6648531.5, rms=7.822 (0.000%) 011: dt: 0.5000, sse=6550946.0, rms=6.705 (0.000%) 012: dt: 0.5000, sse=6585648.0, rms=5.954 (0.000%) 013: dt: 0.5000, sse=6629725.0, rms=5.498 (0.000%) 014: dt: 0.5000, sse=6670392.5, rms=5.214 (0.000%) 015: dt: 0.5000, sse=6699599.5, rms=5.003 (0.000%) 016: dt: 0.5000, sse=6707488.0, rms=4.870 (0.000%) 017: dt: 0.5000, sse=6727141.0, rms=4.758 (0.000%) 018: dt: 0.5000, sse=6733074.5, rms=4.681 (0.000%) 019: dt: 0.5000, sse=6763346.5, rms=4.627 (0.000%) rms = 4.59, time step reduction 1 of 3 to 0.250... 020: dt: 0.5000, sse=6760349.0, rms=4.586 (0.000%) 021: dt: 0.2500, sse=4284669.0, rms=3.386 (0.000%) 022: dt: 0.2500, sse=3976253.0, rms=3.022 (0.000%) 023: dt: 0.2500, sse=3794070.0, rms=2.946 (0.000%) rms = 2.90, time step reduction 2 of 3 to 0.125... 024: dt: 0.2500, sse=3732627.8, rms=2.898 (0.000%) 025: dt: 0.1250, sse=3475646.2, rms=2.632 (0.000%) rms = 2.60, time step reduction 3 of 3 to 0.062... 026: dt: 0.1250, sse=3437541.8, rms=2.596 (0.000%) positioning took 2.4 minutes mean border=67.2, 447 (22) missing vertices, mean dist 0.2 [0.2 (%34.1)->0.4 (%65.9))] %65 local maxima, %22 large gradients and % 8 min vals, 268 gradients ignored tol=1.0e-04, sigma=1.0, host=MacBo, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 averaging target values for 5 iterations... 000: dt: 0.0000, sse=4256693.0, rms=5.62 027: dt: 0.5000, sse=4545632.5, rms=4.544 (0.000%) rms = 4.61, time step reduction 1 of 3 to 0.250... 028: dt: 0.2500, sse=4053700.5, rms=3.513 (0.000%) 029: dt: 0.2500, sse=4005009.2, rms=3.106 (0.000%) 030: dt: 0.2500, sse=3967905.2, rms=2.961 (0.000%) rms = 2.92, time step reduction 2 of 3 to 0.125... 031: dt: 0.2500, sse=3979675.2, rms=2.920 (0.000%) 032: dt: 0.1250, sse=3760828.0, rms=2.641 (0.000%) 033: dt: 0.1250, sse=3728364.0, rms=2.588 (0.000%) rms = 2.58, time step reduction 3 of 3 to 0.062... 034: dt: 0.1250, sse=3721531.0, rms=2.583 (0.000%) positioning took 0.8 minutes mean border=65.5, 689 (18) missing vertices, mean dist 0.1 [0.2 (%36.7)->0.3 (%63.3))] %74 local maxima, %13 large gradients and % 8 min vals, 236 gradients ignored tol=1.0e-04, sigma=0.5, host=MacBo, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 averaging target values for 5 iterations... 000: dt: 0.0000, sse=3873987.2, rms=3.53 rms = 4.32, time step reduction 1 of 3 to 0.250... 035: dt: 0.2500, sse=3726590.2, rms=2.880 (0.000%) 036: dt: 0.2500, sse=3775241.2, rms=2.692 (0.000%) 037: dt: 0.2500, sse=3880419.2, rms=2.639 (0.000%) rms = 2.64, time step reduction 2 of 3 to 0.125... 038: dt: 0.2500, sse=3975100.2, rms=2.636 (0.000%) 039: dt: 0.1250, sse=3809794.5, rms=2.447 (0.000%) rms = 2.41, time step reduction 3 of 3 to 0.062... 040: dt: 0.1250, sse=3798851.8, rms=2.406 (0.000%) positioning took 0.6 minutes mean border=64.9, 1306 (17) missing vertices, mean dist 0.0 [0.2 (%46.0)->0.2 (%54.0))] %76 local maxima, %11 large gradients and % 8 min vals, 212 gradients ignored tol=1.0e-04, sigma=0.2, host=MacBo, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing pial surface to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.pial... writing smoothed curvature to lh.curv.pial 000: dt: 0.0000, sse=3815491.0, rms=2.56 rms = 3.46, time step reduction 1 of 3 to 0.250... 041: dt: 0.2500, sse=3759246.8, rms=2.340 (0.000%) rms = 2.32, time step reduction 2 of 3 to 0.125... 042: dt: 0.2500, sse=3873834.8, rms=2.318 (0.000%) 043: dt: 0.1250, sse=3800770.8, rms=2.241 (0.000%) rms = 2.21, time step reduction 3 of 3 to 0.062... 044: dt: 0.1250, sse=3809027.2, rms=2.209 (0.000%) positioning took 0.4 minutes writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.curv.pial writing smoothed area to lh.area.pial writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.area.pial vertex spacing 0.96 +- 0.40 (0.07-->6.49) (max @ vno 98838 --> 98855) face area 0.37 +- 0.28 (0.00-->5.34) measuring cortical thickness... writing cortical thickness estimate to 'thickness' file. 0 of 130255 vertices processed 25000 of 130255 vertices processed 50000 of 130255 vertices processed 75000 of 130255 vertices processed 100000 of 130255 vertices processed 125000 of 130255 vertices processed 0 of 130255 vertices processed 25000 of 130255 vertices processed 50000 of 130255 vertices processed 75000 of 130255 vertices processed 100000 of 130255 vertices processed 125000 of 130255 vertices processed thickness calculation complete, 141:587 truncations. 38083 vertices at 0 distance 92808 vertices at 1 distance 73131 vertices at 2 distance 30572 vertices at 3 distance 9950 vertices at 4 distance 3004 vertices at 5 distance 997 vertices at 6 distance 344 vertices at 7 distance 135 vertices at 8 distance 64 vertices at 9 distance 35 vertices at 10 distance 21 vertices at 11 distance 16 vertices at 12 distance 18 vertices at 13 distance 10 vertices at 14 distance 13 vertices at 15 distance 8 vertices at 16 distance 4 vertices at 17 distance 3 vertices at 18 distance 1 vertices at 19 distance 1 vertices at 20 distance writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.thickness positioning took 9.3 minutes #-------------------------------------------- #@# Surf Volume lh Tue Dec 22 14:57:40 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf \n mris_calc -o lh.area.mid lh.area add lh.area.pial \n Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] \n mris_calc -o lh.area.mid lh.area.mid div 2 \n Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] \n mris_calc -o lh.volume lh.area.mid mul lh.thickness \n Saving result to 'lh.volume' (type = MRI_CURV_FILE) [ ok ] #----------------------------------------- #@# WM/GM Contrast lh Tue Dec 22 14:57:40 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n pctsurfcon --s T40_OM_Post --lh-only \n Log file is /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts/pctsurfcon.log Tue Dec 22 14:57:40 EET 2015 setenv SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects cd /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts /Applications/freesurfer/bin/pctsurfcon $Id: pctsurfcon,v 1.11.2.1 2011/11/10 20:37:10 nicks Exp $ Darwin MacBook-Pro-di-Marco.local 13.3.0 Darwin Kernel Version 13.3.0: Tue Jun 3 21:27:35 PDT 2014; root:xnu-2422.110.17~1/RELEASE_X86_64 x86_64 FREESURFER_HOME /Applications/freesurfer mri_vol2surf --mov /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --projdist -1 --o /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.46610/lh.wm.mgh --regheader T40_OM_Post --cortex srcvol = /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/orig.mgz as target reference. Loading label /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/lh.cortex.label Reading surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 81604 Masking with /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/lh.cortex.label Writing to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.46610/lh.wm.mgh Dim: 130255 1 1 mri_vol2surf --mov /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --o /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.46610/lh.gm.mgh --projfrac 0.3 --regheader T40_OM_Post --cortex srcvol = /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/orig.mgz as target reference. Loading label /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/lh.cortex.label Reading surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Done reading source surface Reading thickness /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.thickness Done Mapping Source Volume onto Source Subject Surface 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 97113 Masking with /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/lh.cortex.label Writing to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.46610/lh.gm.mgh Dim: 130255 1 1 mri_concat /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.46610/lh.wm.mgh /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.46610/lh.gm.mgh --paired-diff-norm --mul 100 --o /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.w-g.pct.mgh mri_segstats --in /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.w-g.pct.mgh --annot T40_OM_Post lh aparc --sum /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/stats/lh.w-g.pct.stats --snr $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --in /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.w-g.pct.mgh --annot T40_OM_Post lh aparc --sum /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/stats/lh.w-g.pct.stats --snr sysname Darwin hostname MacBook-Pro-di-Marco.local machine x86_64 user marco UseRobust 0 Constructing seg from annotation Reading annotation reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Seg base 1000 Loading /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.w-g.pct.mgh Vertex Area is 0.6196 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation 0 1000 unknown 0 0.000 1 1001 bankssts 1285 894.555 2 1002 caudalanteriorcingulate 1222 775.918 3 1003 caudalmiddlefrontal 3856 2279.308 4 1004 corpuscallosum 0 0.000 5 1005 cuneus 2109 1193.018 6 1006 entorhinal 641 412.467 7 1007 fusiform 3740 2460.727 8 1008 inferiorparietal 6168 3950.972 9 1009 inferiortemporal 4755 3167.038 10 1010 isthmuscingulate 1513 891.659 11 1011 lateraloccipital 7623 4444.348 12 1012 lateralorbitofrontal 3581 2314.140 13 1013 lingual 3733 2309.923 14 1014 medialorbitofrontal 2693 1688.092 15 1015 middletemporal 3883 2539.745 16 1016 parahippocampal 860 567.931 17 1017 paracentral 2393 1382.969 18 1018 parsopercularis 2786 1700.251 19 1019 parsorbitalis 806 501.571 20 1020 parstriangularis 1520 1009.416 21 1021 pericalcarine 1862 1204.595 22 1022 postcentral 6383 3706.980 23 1023 posteriorcingulate 1592 1030.698 24 1024 precentral 7491 4440.574 25 1025 precuneus 5665 3669.769 26 1026 rostralanteriorcingulate 1196 744.317 27 1027 rostralmiddlefrontal 8432 5041.988 28 1028 superiorfrontal 10258 6251.887 29 1029 superiorparietal 8376 4985.749 30 1030 superiortemporal 5133 3296.833 31 1031 supramarginal 5741 3618.406 32 1032 frontalpole 262 153.996 33 1033 temporalpole 613 407.035 34 1034 transversetemporal 738 394.966 35 1035 insula 3318 2050.170 Reporting on 34 segmentations mri_segstats done Cleaning up #----------------------------------------- #@# Parcellation Stats lh Tue Dec 22 14:57:47 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_anatomical_stats -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab T40_OM_Post lh white \n computing statistics for each annotation in ../label/lh.aparc.annot. reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white... reading input pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.pial... reading input white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1285 895 1848 2.162 0.391 0.117 0.035 11 1.9 bankssts 1222 776 2387 2.849 0.586 0.166 0.070 32 4.0 caudalanteriorcingulate 3856 2279 5555 2.335 0.478 0.145 0.089 135 14.5 caudalmiddlefrontal 2109 1193 2298 1.758 0.434 0.150 0.072 37 6.9 cuneus 641 412 1680 2.808 1.084 0.186 0.110 18 3.2 entorhinal 3740 2461 6660 2.331 0.583 0.165 0.081 101 13.2 fusiform 6168 3951 10423 2.347 0.541 0.148 0.056 102 14.0 inferiorparietal 4755 3167 10973 2.713 0.675 0.165 0.091 133 19.4 inferiortemporal 1513 892 2106 2.247 0.726 0.156 0.118 42 8.5 isthmuscingulate 7623 4444 10046 2.084 0.524 0.152 0.074 159 23.0 lateraloccipital 3581 2314 6282 2.409 0.706 0.193 0.137 117 21.2 lateralorbitofrontal 3733 2310 4840 1.909 0.623 0.166 0.100 102 14.4 lingual 2693 1688 4408 2.352 0.797 0.169 0.109 80 11.0 medialorbitofrontal 3883 2540 7678 2.588 0.590 0.142 0.058 68 9.4 middletemporal 860 568 1863 2.701 0.864 0.146 0.063 15 2.3 parahippocampal 2393 1383 3446 2.272 0.618 0.143 0.082 89 8.8 paracentral 2786 1700 4365 2.299 0.534 0.141 0.087 166 10.9 parsopercularis 806 502 1576 2.394 0.659 0.189 0.151 30 5.5 parsorbitalis 1520 1009 2665 2.300 0.489 0.139 0.058 21 3.8 parstriangularis 1862 1205 1868 1.646 0.505 0.174 0.094 45 8.0 pericalcarine 6383 3707 7635 1.904 0.537 0.143 0.075 136 20.4 postcentral 1592 1031 2786 2.388 0.661 0.169 0.081 46 5.2 posteriorcingulate 7491 4441 10473 2.246 0.701 0.150 0.083 190 28.3 precentral 5665 3670 8876 2.270 0.627 0.150 0.065 97 14.3 precuneus 1196 744 2555 2.851 0.767 0.178 0.278 226 5.6 rostralanteriorcingulate 8432 5042 12253 2.128 0.517 0.151 0.089 257 33.4 rostralmiddlefrontal 10258 6252 17295 2.448 0.634 0.154 0.147 484 45.4 superiorfrontal 8376 4986 12012 2.207 0.569 0.136 0.080 196 28.8 superiorparietal 5133 3297 9392 2.441 0.640 0.140 0.247 140 20.7 superiortemporal 5741 3618 8960 2.226 0.557 0.150 0.068 121 16.9 supramarginal 262 154 617 2.723 0.388 0.192 0.093 10 1.1 frontalpole 613 407 1800 2.977 0.846 0.199 0.127 22 3.2 temporalpole 738 395 842 2.002 0.343 0.150 0.089 15 2.2 transversetemporal 3318 2050 6085 2.786 0.839 0.159 0.173 307 19.0 insula #----------------------------------------- #@# Cortical Parc 2 lh Tue Dec 22 14:58:01 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 T40_OM_Post lh ../surf/lh.sphere.reg /Applications/freesurfer/average/lh.destrieux.simple.2009-07-29.gcs ../label/lh.aparc.a2009s.annot \n setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading atlas from /Applications/freesurfer/average/lh.destrieux.simple.2009-07-29.gcs... reading color table from GCSA file.... average std = 3.9 0.2 using min determinant for regularization = 0.000 0 singular and 1066 ill-conditioned covariance matrices regularized input 1: CURVATURE FILE, flags 0, avgs 0, name sulc input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 63 labels changed using aseg relabeling using gibbs priors... 000: 8486 changed, 130255 examined... 001: 2107 changed, 32853 examined... 002: 630 changed, 10872 examined... 003: 275 changed, 3534 examined... 004: 135 changed, 1568 examined... 005: 66 changed, 763 examined... 006: 30 changed, 380 examined... 007: 13 changed, 166 examined... 008: 9 changed, 96 examined... 009: 9 changed, 51 examined... 010: 6 changed, 41 examined... 011: 2 changed, 30 examined... 012: 0 changed, 11 examined... 19 labels changed using aseg 000: 286 total segments, 202 labels (2121 vertices) changed 001: 89 total segments, 6 labels (25 vertices) changed 002: 83 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 140 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... 641 vertices marked for relabeling... 641 labels changed in reclassification. writing output to ../label/lh.aparc.a2009s.annot... classification took 0 minutes and 49 seconds. #----------------------------------------- #@# Parcellation Stats 2 lh Tue Dec 22 14:58:51 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_anatomical_stats -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.a2009s.stats -b -a ../label/lh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab T40_OM_Post lh white \n computing statistics for each annotation in ../label/lh.aparc.a2009s.annot. reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white... reading input pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.pial... reading input white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 76 entries read (originally /autofs/space/birn_044/users/christophe_atlas_rebuild//scripts_2008/Simple_surface_labels2009.txt) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1164 779 2027 2.258 0.509 0.164 0.066 26 3.5 G_and_S_frontomargin 1612 995 2503 2.233 0.549 0.160 0.083 36 5.4 G_and_S_occipital_inf 1965 1109 3096 2.280 0.703 0.148 0.079 54 6.6 G_and_S_paracentral 1554 907 2361 2.229 0.559 0.159 0.099 35 5.4 G_and_S_subcentral 556 354 1214 2.475 0.510 0.192 0.116 26 2.9 G_and_S_transv_frontopol 2521 1627 4237 2.397 0.720 0.157 0.161 243 8.6 G_and_S_cingul-Ant 1153 788 2291 2.731 0.587 0.142 0.060 19 3.1 G_and_S_cingul-Mid-Ant 1278 859 2275 2.444 0.601 0.139 0.061 27 2.8 G_and_S_cingul-Mid-Post 485 300 937 2.538 0.474 0.168 0.078 9 1.7 G_cingul-Post-dorsal 273 167 381 2.028 0.692 0.197 0.281 16 4.9 G_cingul-Post-ventral 1867 986 2146 1.810 0.472 0.167 0.103 49 9.1 G_cuneus 1786 1045 3024 2.368 0.565 0.153 0.093 59 6.7 G_front_inf-Opercular 310 177 637 2.588 0.565 0.210 0.213 16 3.1 G_front_inf-Orbital 948 611 1992 2.467 0.465 0.154 0.070 15 2.8 G_front_inf-Triangul 5334 2833 8471 2.335 0.499 0.158 0.125 286 29.1 G_front_middle 7648 4389 13557 2.539 0.664 0.167 0.188 505 43.3 G_front_sup 442 243 894 2.736 0.584 0.215 0.207 110 4.1 G_Ins_lg_and_S_cent_ins 712 379 1870 3.498 0.714 0.231 0.481 173 9.8 G_insular_short 2122 1235 3989 2.469 0.489 0.159 0.070 59 6.3 G_occipital_middle 1539 829 2125 2.208 0.561 0.146 0.090 61 6.1 G_occipital_sup 1459 870 3017 2.630 0.590 0.176 0.098 55 6.3 G_oc-temp_lat-fusifor 2731 1575 3576 1.924 0.624 0.178 0.123 98 13.1 G_oc-temp_med-Lingual 1173 767 2947 2.775 0.931 0.172 0.093 28 4.5 G_oc-temp_med-Parahip 2363 1483 4814 2.495 0.696 0.199 0.156 82 14.6 G_orbital 2404 1395 4490 2.537 0.551 0.159 0.078 62 7.9 G_pariet_inf-Angular 3054 1880 5323 2.330 0.571 0.160 0.077 79 8.8 G_pariet_inf-Supramar 3608 2034 5963 2.411 0.560 0.144 0.111 102 16.9 G_parietal_sup 2478 1264 2904 1.939 0.527 0.150 0.082 65 9.1 G_postcentral 3023 1518 4429 2.455 0.727 0.151 0.107 125 14.7 G_precentral 3055 1880 5701 2.528 0.538 0.168 0.086 70 9.9 G_precuneus 922 577 1881 2.541 0.629 0.186 0.114 33 4.1 G_rectus 256 155 466 2.997 1.088 0.137 0.135 6 0.7 G_subcallosal 513 249 600 2.038 0.333 0.149 0.088 12 1.6 G_temp_sup-G_T_transv 2129 1332 5055 2.690 0.597 0.167 0.515 94 13.6 G_temp_sup-Lateral 352 219 702 3.158 0.811 0.144 0.063 4 0.9 G_temp_sup-Plan_polar 557 390 1005 2.192 0.558 0.128 0.043 6 1.1 G_temp_sup-Plan_tempo 2896 1926 8101 3.022 0.607 0.187 0.115 103 15.3 G_temporal_inf 2461 1535 5587 2.744 0.587 0.154 0.066 56 6.7 G_temporal_middle 235 175 346 2.113 0.436 0.129 0.040 2 0.4 Lat_Fis-ant-Horizont 187 124 278 2.310 0.551 0.151 0.052 2 0.4 Lat_Fis-ant-Vertical 1079 703 1213 1.977 0.435 0.140 0.066 15 2.8 Lat_Fis-post 2630 1492 3201 1.932 0.555 0.155 0.085 54 8.4 Pole_occipital 1538 1066 4003 2.732 0.846 0.201 0.121 59 8.0 Pole_temporal 2216 1512 2537 1.852 0.647 0.154 0.061 33 5.6 S_calcarine 2809 1992 3012 1.687 0.548 0.149 0.060 32 7.9 S_central 1031 705 1443 2.279 0.680 0.122 0.037 11 1.6 S_cingul-Marginalis 425 287 740 2.831 0.586 0.185 0.103 9 2.1 S_circular_insula_ant 1488 985 2119 2.308 0.817 0.108 0.037 10 2.3 S_circular_insula_inf 1838 1249 2496 2.314 0.535 0.116 0.043 15 3.3 S_circular_insula_sup 1076 730 1570 2.106 0.460 0.116 0.043 12 2.0 S_collat_transv_ant 347 224 358 1.913 0.509 0.150 0.054 4 0.7 S_collat_transv_post 2858 1867 3745 2.069 0.460 0.117 0.042 25 5.6 S_front_inf 1341 824 1481 1.866 0.461 0.136 0.066 18 3.4 S_front_middle 2468 1611 3351 2.207 0.452 0.136 0.058 27 6.2 S_front_sup 349 234 363 1.756 0.346 0.113 0.028 2 0.5 S_interm_prim-Jensen 2936 1977 3638 2.009 0.436 0.125 0.045 34 5.8 S_intrapariet_and_P_trans 1165 726 1182 1.834 0.407 0.139 0.053 13 2.6 S_oc_middle_and_Lunatus 1244 743 1491 2.143 0.414 0.123 0.043 11 2.3 S_oc_sup_and_transversal 783 516 1102 2.225 0.418 0.158 0.064 16 1.9 S_occipital_ant 681 460 971 2.027 0.412 0.142 0.067 10 1.7 S_oc-temp_lat 1448 1013 2004 2.080 0.557 0.136 0.043 14 2.8 S_oc-temp_med_and_Lingual 267 185 291 1.559 0.286 0.156 0.055 4 0.8 S_orbital_lateral 638 443 930 2.050 0.647 0.162 0.146 33 5.9 S_orbital_med-olfact 1292 848 1995 2.266 0.733 0.173 0.089 25 4.7 S_orbital-H_Shaped 1906 1259 2140 1.768 0.488 0.122 0.041 18 3.4 S_parieto_occipital 1345 747 1448 2.286 0.910 0.173 0.095 43 5.0 S_pericallosal 2892 1850 3435 2.021 0.476 0.131 0.055 43 7.1 S_postcentral 1514 973 1896 2.164 0.433 0.135 0.077 118 6.1 S_precentral-inf-part 1250 771 1420 2.053 0.578 0.148 0.067 21 3.8 S_precentral-sup-part 726 446 1063 2.353 0.791 0.172 0.113 20 2.3 S_suborbital 1017 702 1493 2.102 0.498 0.143 0.045 13 2.0 S_subparietal 1049 723 1297 2.176 0.459 0.121 0.034 8 1.7 S_temporal_inf 5010 3389 7322 2.221 0.475 0.129 0.048 60 10.2 S_temporal_sup 446 273 585 2.140 0.349 0.121 0.109 16 1.6 S_temporal_transverse #----------------------------------------- #@# Cortical Parc 3 lh Tue Dec 22 14:59:06 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 T40_OM_Post lh ../surf/lh.sphere.reg /Applications/freesurfer/average/lh.DKTatlas40.gcs ../label/lh.aparc.DKTatlas40.annot \n setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading atlas from /Applications/freesurfer/average/lh.DKTatlas40.gcs... reading color table from GCSA file.... average std = 0.9 using min determinant for regularization = 0.007 0 singular and 293 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 913 labels changed using aseg relabeling using gibbs priors... 000: 2521 changed, 130255 examined... 001: 627 changed, 10858 examined... 002: 178 changed, 3337 examined... 003: 64 changed, 995 examined... 004: 22 changed, 394 examined... 005: 15 changed, 122 examined... 006: 8 changed, 82 examined... 007: 6 changed, 52 examined... 008: 3 changed, 42 examined... 009: 2 changed, 17 examined... 010: 1 changed, 9 examined... 011: 0 changed, 9 examined... 178 labels changed using aseg 000: 62 total segments, 29 labels (357 vertices) changed 001: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 48 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 434 vertices marked for relabeling... 434 labels changed in reclassification. writing output to ../label/lh.aparc.DKTatlas40.annot... classification took 0 minutes and 39 seconds. #----------------------------------------- #@# Parcellation Stats 3 lh Tue Dec 22 14:59:44 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_anatomical_stats -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.DKTatlas40.stats -b -a ../label/lh.aparc.DKTatlas40.annot -c ../label/aparc.annot.DKTatlas40.ctab T40_OM_Post lh white \n computing statistics for each annotation in ../label/lh.aparc.DKTatlas40.annot. reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white... reading input pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.pial... reading input white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 36 entries read (originally /Applications/freesurfer/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.DKTatlas40.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1650 1088 2932 2.657 0.619 0.156 0.062 35 4.7 caudalanteriorcingulate 3963 2343 5707 2.333 0.479 0.145 0.090 137 14.9 caudalmiddlefrontal 2863 1662 3332 1.835 0.490 0.142 0.069 48 8.9 cuneus 599 388 1525 2.713 1.106 0.176 0.107 15 2.8 entorhinal 3405 2216 6071 2.357 0.573 0.162 0.081 90 12.1 fusiform 5725 3658 9597 2.360 0.536 0.148 0.056 96 13.0 inferiorparietal 4684 3152 10763 2.683 0.703 0.168 0.092 129 19.2 inferiortemporal 1534 909 2151 2.253 0.723 0.157 0.116 42 8.6 isthmuscingulate 8096 4670 10807 2.101 0.532 0.150 0.075 172 25.6 lateraloccipital 3893 2513 7105 2.417 0.713 0.189 0.130 123 20.7 lateralorbitofrontal 3681 2282 4747 1.893 0.606 0.166 0.096 93 13.8 lingual 2268 1432 3886 2.381 0.817 0.178 0.131 85 11.8 medialorbitofrontal 5376 3516 10339 2.541 0.576 0.142 0.058 96 13.0 middletemporal 873 577 1886 2.719 0.878 0.146 0.063 15 2.3 parahippocampal 2663 1547 3826 2.318 0.646 0.146 0.087 100 10.0 paracentral 2455 1491 3818 2.343 0.518 0.144 0.094 162 10.2 parsopercularis 918 585 1715 2.407 0.560 0.186 0.139 31 5.9 parsorbitalis 2071 1336 3266 2.144 0.520 0.138 0.065 37 6.4 parstriangularis 1884 1207 1886 1.649 0.511 0.178 0.103 55 8.6 pericalcarine 7085 4163 8637 1.923 0.567 0.143 0.073 145 21.9 postcentral 1713 1126 2931 2.358 0.653 0.167 0.078 46 5.3 posteriorcingulate 7376 4381 10379 2.257 0.702 0.150 0.082 187 27.8 precentral 5555 3565 8936 2.317 0.629 0.152 0.067 99 14.4 precuneus 1540 964 3000 2.763 0.762 0.172 0.228 232 6.3 rostralanteriorcingulate 5814 3474 8510 2.150 0.522 0.148 0.084 154 23.3 rostralmiddlefrontal 11900 7136 19840 2.387 0.632 0.156 0.143 567 52.5 superiorfrontal 6650 4006 9303 2.182 0.535 0.137 0.083 160 22.7 superiorparietal 6893 4497 12797 2.434 0.662 0.144 0.203 176 26.1 superiortemporal 5598 3526 8696 2.220 0.559 0.152 0.071 121 16.7 supramarginal 706 373 782 1.981 0.360 0.148 0.089 13 2.1 transversetemporal 2796 1697 5379 2.885 0.828 0.157 0.176 286 16.7 insula \n#----------------------------------------- #@# Curvature Stats rh Tue Dec 22 14:59:59 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf \n mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/rh.curv.stats -F smoothwm T40_OM_Post rh curv sulc \n Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/rh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ T40_OM_Post/rh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vertex faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 262 ] Gb_filter = 0 WARN: S lookup min: -0.334158 WARN: S explicit min: 0.000000 vertex = 790 #-------------------------------------------- #@# Sphere rh Tue Dec 22 15:00:04 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_sphere -seed 1234 ../surf/rh.inflated ../surf/rh.sphere \n setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... scaling brain by 0.328... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=MacBo, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 1234 -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %19.20 pass 1: epoch 2 of 3 starting distance error %19.14 unfolding complete - removing small folds... starting distance error %19.08 removing remaining folds... final distance error %19.10 MRISunfold() return, current seed 1234 writing spherical brain to ../surf/rh.sphere spherical transformation took 0.45 hours #-------------------------------------------- #@# Surf Reg rh Tue Dec 22 15:27:16 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_register -curv ../surf/rh.sphere /Applications/freesurfer/average/rh.average.curvature.filled.buckner40.tif ../surf/rh.sphere.reg \n using smoothwm curvature for final alignment $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading surface from ../surf/rh.sphere... reading template parameterization from /Applications/freesurfer/average/rh.average.curvature.filled.buckner40.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=MacBo, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 1 randomSeed 0 tol=5.0e-01, sigma=0.0, host=MacBo, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading rh.sulc curvature mean = 0.000, std = 0.580 curvature mean = 0.025, std = 0.933 curvature mean = 0.028, std = 0.871 Starting MRISrigidBodyAlignGlobal() d=64.00 min @ (16.00, 0.00, 0.00) sse = 275740.3, tmin=0.6423 d=32.00 min @ (-8.00, -8.00, 0.00) sse = 242992.2, tmin=1.2897 d=16.00 min @ (4.00, 4.00, 0.00) sse = 217794.9, tmin=1.9473 d=8.00 min @ (0.00, 0.00, 2.00) sse = 212178.2, tmin=2.6306 d=4.00 min @ (-1.00, -1.00, 0.00) sse = 208833.8, tmin=3.3218 d=2.00 min @ (0.00, 0.00, -0.50) sse = 208294.3, tmin=4.0242 d=1.00 min @ (0.25, 0.00, 0.00) sse = 208135.6, tmin=4.7142 d=0.50 min @ (0.00, -0.12, 0.00) sse = 208111.3, tmin=5.4019 tol=1.0e+00, sigma=0.5, host=MacBo, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization MRISrigidBodyAlignGlobal() done 5.40 min curvature mean = -0.007, std = 0.956 curvature mean = 0.010, std = 0.948 curvature mean = -0.010, std = 0.966 curvature mean = 0.004, std = 0.977 curvature mean = -0.013, std = 0.968 curvature mean = 0.001, std = 0.990 2 Reading smoothwm curvature mean = -0.036, std = 0.344 curvature mean = 0.004, std = 0.070 curvature mean = 0.064, std = 0.294 curvature mean = 0.004, std = 0.084 curvature mean = 0.031, std = 0.452 curvature mean = 0.004, std = 0.090 curvature mean = 0.017, std = 0.574 curvature mean = 0.004, std = 0.093 curvature mean = 0.008, std = 0.674 MRISregister() return, current seed 0 writing registered surface to ../surf/rh.sphere.reg... expanding nbhd size to 1 #-------------------------------------------- #@# Jacobian white rh Tue Dec 22 15:43:32 EET 2015 \n mris_jacobian ../surf/rh.white ../surf/rh.sphere.reg ../surf/rh.jacobian_white \n reading surface from ../surf/rh.white... writing curvature file ../surf/rh.jacobian_white #-------------------------------------------- #@# AvgCurv rh Tue Dec 22 15:43:34 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mrisp_paint -a 5 /Applications/freesurfer/average/rh.average.curvature.filled.buckner40.tif#6 ../surf/rh.sphere.reg ../surf/rh.avg_curv \n averaging curvature patterns 5 times... reading surface from ../surf/rh.sphere.reg... reading template parameterization from /Applications/freesurfer/average/rh.average.curvature.filled.buckner40.tif... writing curvature file to ../surf/rh.avg_curv... #----------------------------------------- #@# Cortical Parc rh Tue Dec 22 15:43:35 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 T40_OM_Post rh ../surf/rh.sphere.reg /Applications/freesurfer/average/rh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ../label/rh.aparc.annot \n setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading atlas from /Applications/freesurfer/average/rh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs... reading color table from GCSA file.... average std = 0.7 using min determinant for regularization = 0.006 0 singular and 311 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 1143 labels changed using aseg relabeling using gibbs priors... 000: 3001 changed, 132032 examined... 001: 683 changed, 12469 examined... 002: 188 changed, 3781 examined... 003: 58 changed, 1087 examined... 004: 29 changed, 348 examined... 005: 7 changed, 157 examined... 006: 4 changed, 53 examined... 007: 2 changed, 25 examined... 008: 0 changed, 9 examined... 191 labels changed using aseg 000: 98 total segments, 58 labels (469 vertices) changed 001: 39 total segments, 1 labels (13 vertices) changed 002: 38 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 55 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1259 vertices marked for relabeling... 1259 labels changed in reclassification. writing output to ../label/rh.aparc.annot... classification took 0 minutes and 40 seconds. #-------------------------------------------- #@# Make Pial Surf rh Tue Dec 22 15:44:15 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_make_surfaces -white NOWRITE -mgz -T1 brain.finalsurfs T40_OM_Post rh \n -white NOWRITE indicates that white, curv, area, and cortex.label files will not be written... INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/filled.mgz... reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/brain.finalsurfs.mgz... reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... 13350 bright wm thresholded. 2609 bright non-wm voxels segmented. reading original surface position from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.orig... computing class statistics... border white: 274904 voxels (1.64%) border gray 286178 voxels (1.71%) WM (98.0): 98.5 +- 6.5 [70.0 --> 110.0] GM (89.0) : 86.3 +- 11.6 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 71.4 (was 70) setting MAX_BORDER_WHITE to 109.5 (was 105) setting MIN_BORDER_WHITE to 83.0 (was 85) setting MAX_CSF to 59.9 (was 40) setting MAX_GRAY to 96.5 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 77.2 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 48.3 (was 40) smoothing contralateral hemisphere... using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=103, GM=83 mean inside = 97.4, mean outside = 84.7 smoothing surface for 5 iterations... reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) repositioning cortical surface to gray/white boundary reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/aseg.mgz... smoothing T1 volume with sigma = 2.000 vertex spacing 0.81 +- 0.23 (0.01-->5.14) (max @ vno 110695 --> 115085) face area 0.27 +- 0.13 (0.00-->3.15) mean absolute distance = 0.92 +- 1.22 4825 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... deleting segment 1 with 438 points - only 1.83% unknown removing 3 vertex label from ripped group removing 2 vertex label from ripped group deleting segment 7 with 5 points - only 0.00% unknown mean border=90.6, 103 (103) missing vertices, mean dist 0.1 [1.1 (%37.8)->0.8 (%62.2))] %35 local maxima, %60 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=MacBo, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.89 +- 0.26 (0.04-->4.79) (max @ vno 110695 --> 115085) face area 0.27 +- 0.14 (0.00-->2.35) mean absolute distance = 0.56 +- 0.91 5358 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3771582.5, rms=7.39 001: dt: 0.5000, sse=4751859.5, rms=5.088 (0.000%) 002: dt: 0.5000, sse=4866688.5, rms=3.633 (0.000%) 003: dt: 0.5000, sse=5054685.5, rms=2.822 (0.000%) 004: dt: 0.5000, sse=5168191.5, rms=2.420 (0.000%) 005: dt: 0.5000, sse=5213360.0, rms=2.225 (0.000%) 006: dt: 0.5000, sse=5249726.0, rms=2.136 (0.000%) rms = 2.09, time step reduction 1 of 3 to 0.250... 007: dt: 0.5000, sse=5274151.0, rms=2.088 (0.000%) 008: dt: 0.2500, sse=3842476.5, rms=1.714 (0.000%) 009: dt: 0.2500, sse=3713642.5, rms=1.657 (0.000%) rms = 1.65, time step reduction 2 of 3 to 0.125... 010: dt: 0.2500, sse=3664961.5, rms=1.648 (0.000%) rms = 1.63, time step reduction 3 of 3 to 0.062... 011: dt: 0.1250, sse=3626704.0, rms=1.635 (0.000%) positioning took 1.1 minutes inhibiting deformation at non-cortical midline structures... removing 2 vertex label from ripped group deleting segment 1 with 13 points - only 0.00% unknown deleting segment 2 with 307 points - only 2.61% unknown deleting segment 6 with 19 points - only 0.00% unknown deleting segment 8 with 37 points - only 0.00% unknown mean border=92.3, 137 (47) missing vertices, mean dist -0.3 [0.7 (%60.1)->0.3 (%39.9))] %51 local maxima, %44 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=MacBo, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.87 +- 0.26 (0.07-->4.75) (max @ vno 110695 --> 115085) face area 0.33 +- 0.16 (0.00-->3.01) mean absolute distance = 0.45 +- 0.59 4949 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3924326.5, rms=3.27 012: dt: 0.5000, sse=4253771.5, rms=2.171 (0.000%) 013: dt: 0.5000, sse=4690111.5, rms=1.825 (0.000%) 014: dt: 0.5000, sse=4676549.5, rms=1.751 (0.000%) rms = 1.74, time step reduction 1 of 3 to 0.250... 015: dt: 0.5000, sse=5017827.0, rms=1.740 (0.000%) 016: dt: 0.2500, sse=4069585.2, rms=1.447 (0.000%) rms = 1.41, time step reduction 2 of 3 to 0.125... 017: dt: 0.2500, sse=3942191.5, rms=1.412 (0.000%) rms = 1.40, time step reduction 3 of 3 to 0.062... 018: dt: 0.1250, sse=3898099.8, rms=1.401 (0.000%) positioning took 0.7 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 13 points - only 0.00% unknown deleting segment 1 with 308 points - only 1.95% unknown removing 4 vertex label from ripped group deleting segment 2 with 4 points - only 0.00% unknown deleting segment 3 with 37 points - only 0.00% unknown deleting segment 4 with 7 points - only 0.00% unknown mean border=94.4, 137 (35) missing vertices, mean dist -0.3 [0.5 (%67.5)->0.3 (%32.5))] %71 local maxima, %24 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=MacBo, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.86 +- 0.26 (0.04-->4.57) (max @ vno 110695 --> 115085) face area 0.32 +- 0.16 (0.00-->2.95) mean absolute distance = 0.34 +- 0.46 3801 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=4065294.8, rms=3.05 019: dt: 0.5000, sse=4290128.5, rms=1.807 (0.000%) 020: dt: 0.5000, sse=4765762.0, rms=1.577 (0.000%) rms = 1.60, time step reduction 1 of 3 to 0.250... 021: dt: 0.2500, sse=4336492.5, rms=1.397 (0.000%) 022: dt: 0.2500, sse=4135853.2, rms=1.316 (0.000%) rms = 1.31, time step reduction 2 of 3 to 0.125... 023: dt: 0.2500, sse=4077702.5, rms=1.308 (0.000%) rms = 1.30, time step reduction 3 of 3 to 0.062... 024: dt: 0.1250, sse=4047863.8, rms=1.298 (0.000%) positioning took 0.7 minutes inhibiting deformation at non-cortical midline structures... deleting segment 1 with 360 points - only 1.67% unknown deleting segment 2 with 7 points - only 0.00% unknown removing 4 vertex label from ripped group deleting segment 4 with 37 points - only 0.00% unknown deleting segment 5 with 10 points - only 0.00% unknown mean border=95.3, 161 (21) missing vertices, mean dist -0.1 [0.4 (%59.1)->0.3 (%40.9))] %80 local maxima, %15 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=MacBo, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 repositioning cortical surface to gray/csf boundary. smoothing T1 volume with sigma = 2.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=4070681.2, rms=1.77 025: dt: 0.5000, sse=4979008.0, rms=1.159 (0.000%) rms = 1.38, time step reduction 1 of 3 to 0.250... 026: dt: 0.2500, sse=4648326.5, rms=1.066 (0.000%) rms = 1.07, time step reduction 2 of 3 to 0.125... rms = 1.06, time step reduction 3 of 3 to 0.062... 027: dt: 0.1250, sse=4608997.0, rms=1.058 (0.000%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... removing 4 vertex label from ripped group deleting segment 1 with 4 points - only 0.00% unknown deleting segment 4 with 9 points - only 0.00% unknown smoothing surface for 5 iterations... mean border=71.0, 107 (107) missing vertices, mean dist 2.0 [0.7 (%0.0)->2.4 (%100.0))] %40 local maxima, %40 large gradients and %16 min vals, 645 gradients ignored tol=1.0e-04, sigma=2.0, host=MacBo, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 1.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=18127472.0, rms=25.08 001: dt: 0.5000, sse=15268929.0, rms=22.682 (0.000%) 002: dt: 0.5000, sse=12889754.0, rms=20.498 (0.000%) 003: dt: 0.5000, sse=11048052.0, rms=18.554 (0.000%) 004: dt: 0.5000, sse=9789428.0, rms=16.789 (0.000%) 005: dt: 0.5000, sse=8907412.0, rms=15.156 (0.000%) 006: dt: 0.5000, sse=8253569.5, rms=13.596 (0.000%) 007: dt: 0.5000, sse=7684977.5, rms=12.063 (0.000%) 008: dt: 0.5000, sse=7236049.0, rms=10.555 (0.000%) 009: dt: 0.5000, sse=6916503.5, rms=9.143 (0.000%) 010: dt: 0.5000, sse=6748475.5, rms=7.891 (0.000%) 011: dt: 0.5000, sse=6666069.0, rms=6.864 (0.000%) 012: dt: 0.5000, sse=6663457.0, rms=6.065 (0.000%) 013: dt: 0.5000, sse=6710131.0, rms=5.510 (0.000%) 014: dt: 0.5000, sse=6752830.5, rms=5.174 (0.000%) 015: dt: 0.5000, sse=6818288.5, rms=4.967 (0.000%) 016: dt: 0.5000, sse=6852214.0, rms=4.847 (0.000%) 017: dt: 0.5000, sse=6846371.5, rms=4.761 (0.000%) 018: dt: 0.5000, sse=6873003.5, rms=4.697 (0.000%) rms = 4.65, time step reduction 1 of 3 to 0.250... 019: dt: 0.5000, sse=6877283.5, rms=4.649 (0.000%) 020: dt: 0.2500, sse=4423870.0, rms=3.566 (0.000%) 021: dt: 0.2500, sse=4153531.2, rms=3.248 (0.000%) 022: dt: 0.2500, sse=3976789.0, rms=3.168 (0.000%) rms = 3.13, time step reduction 2 of 3 to 0.125... 023: dt: 0.2500, sse=3924364.5, rms=3.127 (0.000%) 024: dt: 0.1250, sse=3667644.8, rms=2.905 (0.000%) rms = 2.87, time step reduction 3 of 3 to 0.062... 025: dt: 0.1250, sse=3618925.8, rms=2.867 (0.000%) positioning took 2.3 minutes mean border=67.8, 733 (17) missing vertices, mean dist 0.2 [0.2 (%33.8)->0.4 (%66.2))] %62 local maxima, %22 large gradients and %11 min vals, 306 gradients ignored tol=1.0e-04, sigma=1.0, host=MacBo, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 averaging target values for 5 iterations... 000: dt: 0.0000, sse=4390484.5, rms=5.56 026: dt: 0.5000, sse=4620824.5, rms=4.579 (0.000%) rms = 4.66, time step reduction 1 of 3 to 0.250... 027: dt: 0.2500, sse=4170517.8, rms=3.642 (0.000%) 028: dt: 0.2500, sse=4208149.5, rms=3.282 (0.000%) 029: dt: 0.2500, sse=4149673.5, rms=3.119 (0.000%) 030: dt: 0.2500, sse=4183465.0, rms=3.066 (0.000%) 031: dt: 0.2500, sse=4169111.8, rms=3.002 (0.000%) rms = 2.98, time step reduction 2 of 3 to 0.125... 032: dt: 0.2500, sse=4198490.0, rms=2.982 (0.000%) 033: dt: 0.1250, sse=3963679.0, rms=2.706 (0.000%) 034: dt: 0.1250, sse=3934171.0, rms=2.652 (0.000%) rms = 2.64, time step reduction 3 of 3 to 0.062... 035: dt: 0.1250, sse=3914407.2, rms=2.640 (0.000%) positioning took 1.0 minutes mean border=66.2, 1027 (12) missing vertices, mean dist 0.1 [0.2 (%36.7)->0.3 (%63.3))] %71 local maxima, %13 large gradients and %10 min vals, 289 gradients ignored tol=1.0e-04, sigma=0.5, host=MacBo, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 averaging target values for 5 iterations... 000: dt: 0.0000, sse=4047404.5, rms=3.44 rms = 4.22, time step reduction 1 of 3 to 0.250... 036: dt: 0.2500, sse=3902606.0, rms=2.858 (0.000%) 037: dt: 0.2500, sse=3967370.5, rms=2.700 (0.000%) rms = 2.66, time step reduction 2 of 3 to 0.125... 038: dt: 0.2500, sse=4090539.2, rms=2.665 (0.000%) 039: dt: 0.1250, sse=3964966.2, rms=2.497 (0.000%) rms = 2.46, time step reduction 3 of 3 to 0.062... 040: dt: 0.1250, sse=3955659.5, rms=2.464 (0.000%) positioning took 0.5 minutes mean border=65.6, 1675 (12) missing vertices, mean dist 0.0 [0.2 (%45.7)->0.2 (%54.3))] %73 local maxima, %11 large gradients and %10 min vals, 318 gradients ignored tol=1.0e-04, sigma=0.2, host=MacBo, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing pial surface to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.pial... writing smoothed curvature to rh.curv.pial 000: dt: 0.0000, sse=3971578.8, rms=2.61 rms = 3.42, time step reduction 1 of 3 to 0.250... 041: dt: 0.2500, sse=3919676.5, rms=2.417 (0.000%) rms = 2.39, time step reduction 2 of 3 to 0.125... 042: dt: 0.2500, sse=4057371.5, rms=2.387 (0.000%) 043: dt: 0.1250, sse=3982881.2, rms=2.309 (0.000%) rms = 2.27, time step reduction 3 of 3 to 0.062... 044: dt: 0.1250, sse=3994597.8, rms=2.274 (0.000%) positioning took 0.4 minutes writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.curv.pial writing smoothed area to rh.area.pial writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.area.pial vertex spacing 0.96 +- 0.40 (0.08-->7.22) (max @ vno 102420 --> 101480) face area 0.37 +- 0.28 (0.00-->7.66) measuring cortical thickness... writing cortical thickness estimate to 'thickness' file. 0 of 132032 vertices processed 25000 of 132032 vertices processed 50000 of 132032 vertices processed 75000 of 132032 vertices processed 100000 of 132032 vertices processed 125000 of 132032 vertices processed 0 of 132032 vertices processed 25000 of 132032 vertices processed 50000 of 132032 vertices processed 75000 of 132032 vertices processed 100000 of 132032 vertices processed 125000 of 132032 vertices processed thickness calculation complete, 241:994 truncations. 37648 vertices at 0 distance 94414 vertices at 1 distance 73625 vertices at 2 distance 31614 vertices at 3 distance 10312 vertices at 4 distance 2842 vertices at 5 distance 917 vertices at 6 distance 313 vertices at 7 distance 163 vertices at 8 distance 64 vertices at 9 distance 29 vertices at 10 distance 29 vertices at 11 distance 16 vertices at 12 distance 11 vertices at 13 distance 8 vertices at 14 distance 13 vertices at 15 distance 8 vertices at 16 distance 6 vertices at 17 distance 8 vertices at 18 distance 8 vertices at 19 distance 4 vertices at 20 distance writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.thickness positioning took 9.4 minutes #-------------------------------------------- #@# Surf Volume rh Tue Dec 22 15:53:38 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf \n mris_calc -o rh.area.mid rh.area add rh.area.pial \n Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] \n mris_calc -o rh.area.mid rh.area.mid div 2 \n Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] \n mris_calc -o rh.volume rh.area.mid mul rh.thickness \n Saving result to 'rh.volume' (type = MRI_CURV_FILE) [ ok ] #----------------------------------------- #@# WM/GM Contrast rh Tue Dec 22 15:53:38 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n pctsurfcon --s T40_OM_Post --rh-only \n Log file is /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts/pctsurfcon.log Tue Dec 22 15:53:38 EET 2015 setenv SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects cd /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts /Applications/freesurfer/bin/pctsurfcon $Id: pctsurfcon,v 1.11.2.1 2011/11/10 20:37:10 nicks Exp $ Darwin MacBook-Pro-di-Marco.local 13.3.0 Darwin Kernel Version 13.3.0: Tue Jun 3 21:27:35 PDT 2014; root:xnu-2422.110.17~1/RELEASE_X86_64 x86_64 FREESURFER_HOME /Applications/freesurfer mri_vol2surf --mov /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --projdist -1 --o /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.47129/rh.wm.mgh --regheader T40_OM_Post --cortex srcvol = /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/orig.mgz as target reference. Loading label /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/rh.cortex.label Reading surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 83485 Masking with /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/rh.cortex.label Writing to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.47129/rh.wm.mgh Dim: 132032 1 1 mri_vol2surf --mov /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --o /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.47129/rh.gm.mgh --projfrac 0.3 --regheader T40_OM_Post --cortex srcvol = /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/orig.mgz as target reference. Loading label /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/rh.cortex.label Reading surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Done reading source surface Reading thickness /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.thickness Done Mapping Source Volume onto Source Subject Surface 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 98492 Masking with /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/rh.cortex.label Writing to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.47129/rh.gm.mgh Dim: 132032 1 1 mri_concat /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.47129/rh.wm.mgh /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.47129/rh.gm.mgh --paired-diff-norm --mul 100 --o /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.w-g.pct.mgh mri_segstats --in /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.w-g.pct.mgh --annot T40_OM_Post rh aparc --sum /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/stats/rh.w-g.pct.stats --snr $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --in /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.w-g.pct.mgh --annot T40_OM_Post rh aparc --sum /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/stats/rh.w-g.pct.stats --snr sysname Darwin hostname MacBook-Pro-di-Marco.local machine x86_64 user marco UseRobust 0 Constructing seg from annotation Reading annotation reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Seg base 2000 Loading /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.w-g.pct.mgh Vertex Area is 0.623175 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation 0 2000 unknown 0 0.000 1 2001 bankssts 1262 833.682 2 2002 caudalanteriorcingulate 1165 775.528 3 2003 caudalmiddlefrontal 3416 2059.011 4 2004 corpuscallosum 0 0.000 5 2005 cuneus 2313 1260.809 6 2006 entorhinal 565 372.548 7 2007 fusiform 3864 2566.991 8 2008 inferiorparietal 7479 4799.853 9 2009 inferiortemporal 4797 3112.146 10 2010 isthmuscingulate 1390 836.642 11 2011 lateraloccipital 7676 4492.871 12 2012 lateralorbitofrontal 3523 2233.020 13 2013 lingual 4045 2457.119 14 2014 medialorbitofrontal 2621 1676.543 15 2015 middletemporal 4920 3163.342 16 2016 parahippocampal 785 517.204 17 2017 paracentral 2513 1530.266 18 2018 parsopercularis 1919 1240.142 19 2019 parsorbitalis 1004 634.817 20 2020 parstriangularis 1978 1252.326 21 2021 pericalcarine 2350 1530.256 22 2022 postcentral 6028 3623.357 23 2023 posteriorcingulate 1645 1063.171 24 2024 precentral 8223 5142.238 25 2025 precuneus 5656 3485.910 26 2026 rostralanteriorcingulate 953 592.854 27 2027 rostralmiddlefrontal 8699 5492.925 28 2028 superiorfrontal 9712 5918.196 29 2029 superiorparietal 8371 5018.921 30 2030 superiortemporal 5251 3325.307 31 2031 supramarginal 4897 3122.560 32 2032 frontalpole 340 218.182 33 2033 temporalpole 616 453.164 34 2034 transversetemporal 606 291.984 35 2035 insula 3023 1941.283 Reporting on 34 segmentations mri_segstats done Cleaning up #----------------------------------------- #@# Parcellation Stats rh Tue Dec 22 15:53:45 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_anatomical_stats -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab T40_OM_Post rh white \n computing statistics for each annotation in ../label/rh.aparc.annot. reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white... reading input pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.pial... reading input white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1262 834 2012 2.386 0.393 0.130 0.045 13 2.5 bankssts 1165 776 2287 2.550 0.889 0.163 0.071 30 3.3 caudalanteriorcingulate 3416 2059 5180 2.391 0.489 0.141 0.071 55 11.2 caudalmiddlefrontal 2313 1261 2628 1.859 0.528 0.152 0.073 46 7.4 cuneus 565 373 1507 3.009 0.696 0.203 0.244 34 6.8 entorhinal 3864 2567 7300 2.387 0.694 0.172 0.096 132 13.5 fusiform 7479 4800 12520 2.370 0.558 0.147 0.058 121 18.3 inferiorparietal 4797 3112 9966 2.700 0.692 0.159 0.189 212 16.9 inferiortemporal 1390 837 2053 2.240 0.718 0.163 0.169 134 13.1 isthmuscingulate 7676 4493 10446 2.102 0.592 0.152 0.081 150 25.8 lateraloccipital 3523 2233 5607 2.359 0.754 0.203 0.228 306 30.8 lateralorbitofrontal 4045 2457 5056 1.873 0.545 0.183 0.177 202 40.6 lingual 2621 1677 4885 2.399 0.865 0.163 0.095 80 10.2 medialorbitofrontal 4920 3163 10307 2.693 0.592 0.144 0.082 467 12.9 middletemporal 785 517 1628 2.689 0.933 0.162 0.100 42 3.9 parahippocampal 2513 1530 3262 2.116 0.630 0.141 0.062 37 7.0 paracentral 1919 1240 2993 2.289 0.451 0.143 0.069 30 5.3 parsopercularis 1004 635 1930 2.369 0.660 0.190 0.122 31 4.9 parsorbitalis 1978 1252 3326 2.245 0.625 0.159 0.079 36 7.0 parstriangularis 2350 1530 2267 1.532 0.424 0.158 0.078 43 6.3 pericalcarine 6028 3623 7332 1.839 0.590 0.140 0.089 148 23.1 postcentral 1645 1063 2842 2.449 0.642 0.156 0.070 32 4.7 posteriorcingulate 8223 5142 11902 2.218 0.674 0.162 0.136 422 49.3 precentral 5656 3486 8231 2.112 0.568 0.141 0.076 122 19.6 precuneus 953 593 2160 3.119 0.962 0.166 0.124 40 4.1 rostralanteriorcingulate 8699 5493 14125 2.229 0.540 0.168 0.147 1269 50.5 rostralmiddlefrontal 9712 5918 16399 2.495 0.537 0.160 0.265 709 72.4 superiorfrontal 8371 5019 11719 2.118 0.561 0.140 0.117 322 38.5 superiorparietal 5251 3325 9605 2.510 0.581 0.142 0.168 542 19.1 superiortemporal 4897 3123 7677 2.327 0.567 0.147 0.066 90 13.9 supramarginal 340 218 834 2.704 0.492 0.213 0.169 17 2.4 frontalpole 616 453 2404 3.520 0.731 0.219 0.130 20 3.7 temporalpole 606 292 688 2.168 0.324 0.140 0.151 23 3.2 transversetemporal 3023 1941 6062 2.909 0.959 0.169 0.187 107 27.9 insula #----------------------------------------- #@# Cortical Parc 2 rh Tue Dec 22 15:53:59 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 T40_OM_Post rh ../surf/rh.sphere.reg /Applications/freesurfer/average/rh.destrieux.simple.2009-07-29.gcs ../label/rh.aparc.a2009s.annot \n setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading atlas from /Applications/freesurfer/average/rh.destrieux.simple.2009-07-29.gcs... reading color table from GCSA file.... average std = 1.9 0.2 using min determinant for regularization = 0.000 0 singular and 851 ill-conditioned covariance matrices regularized input 1: CURVATURE FILE, flags 0, avgs 0, name sulc input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 14 labels changed using aseg relabeling using gibbs priors... 000: 9088 changed, 132032 examined... 001: 2198 changed, 34884 examined... 002: 670 changed, 11252 examined... 003: 309 changed, 3759 examined... 004: 144 changed, 1682 examined... 005: 70 changed, 884 examined... 006: 30 changed, 406 examined... 007: 14 changed, 165 examined... 008: 4 changed, 60 examined... 009: 0 changed, 20 examined... 18 labels changed using aseg 000: 300 total segments, 218 labels (2793 vertices) changed 001: 100 total segments, 18 labels (58 vertices) changed 002: 82 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 121 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... 761 vertices marked for relabeling... 761 labels changed in reclassification. writing output to ../label/rh.aparc.a2009s.annot... classification took 0 minutes and 50 seconds. #----------------------------------------- #@# Parcellation Stats 2 rh Tue Dec 22 15:54:50 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_anatomical_stats -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.a2009s.stats -b -a ../label/rh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab T40_OM_Post rh white \n computing statistics for each annotation in ../label/rh.aparc.a2009s.annot. reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white... reading input pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.pial... reading input white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 76 entries read (originally /autofs/space/birn_044/users/christophe_atlas_rebuild//scripts_2008/Simple_surface_labels2009.txt) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 963 644 1765 2.258 0.569 0.168 0.077 27 2.8 G_and_S_frontomargin 1205 750 2318 2.599 0.678 0.169 0.096 28 4.6 G_and_S_occipital_inf 1650 958 2222 1.985 0.705 0.153 0.127 51 6.3 G_and_S_paracentral 1495 933 2444 2.326 0.551 0.157 0.074 29 4.8 G_and_S_subcentral 1124 690 1846 2.182 0.603 0.194 0.287 210 12.9 G_and_S_transv_frontopol 2701 1764 5178 2.657 0.823 0.157 0.089 69 9.1 G_and_S_cingul-Ant 1384 926 2717 2.661 0.616 0.144 0.061 23 3.3 G_and_S_cingul-Mid-Ant 1279 840 2237 2.453 0.513 0.131 0.046 16 2.5 G_and_S_cingul-Mid-Post 484 297 1011 2.556 0.503 0.185 0.228 15 5.8 G_cingul-Post-dorsal 348 198 574 2.278 0.577 0.178 0.241 79 5.1 G_cingul-Post-ventral 2194 1204 2368 1.724 0.518 0.163 0.083 54 7.7 G_cuneus 1322 837 2447 2.357 0.505 0.172 0.098 30 5.1 G_front_inf-Opercular 361 225 715 2.334 0.431 0.177 0.094 7 1.4 G_front_inf-Orbital 1103 637 2175 2.502 0.555 0.163 0.087 27 4.5 G_front_inf-Triangul 3954 2306 7490 2.483 0.512 0.171 0.146 162 27.4 G_front_middle 6710 3846 12235 2.598 0.550 0.175 0.352 634 61.3 G_front_sup 434 269 1046 3.172 1.011 0.179 0.448 20 12.5 G_Ins_lg_and_S_cent_ins 457 290 1580 3.910 0.730 0.187 0.128 12 2.7 G_insular_short 2112 1208 3819 2.465 0.545 0.151 0.073 41 5.9 G_occipital_middle 1821 943 2537 2.135 0.508 0.129 0.090 30 7.7 G_occipital_sup 1278 794 2420 2.481 0.539 0.180 0.108 39 5.0 G_oc-temp_lat-fusifor 2798 1619 3589 1.906 0.577 0.187 0.221 177 36.1 G_oc-temp_med-Lingual 1493 931 3446 2.848 0.776 0.206 0.217 138 15.0 G_oc-temp_med-Parahip 2519 1592 4898 2.497 0.813 0.225 0.272 251 22.9 G_orbital 2748 1691 5114 2.468 0.546 0.157 0.068 55 7.8 G_pariet_inf-Angular 2339 1427 4543 2.576 0.629 0.162 0.092 66 9.0 G_pariet_inf-Supramar 2988 1743 4434 2.179 0.603 0.153 0.204 188 21.5 G_parietal_sup 2358 1238 3055 1.991 0.535 0.147 0.108 79 13.6 G_postcentral 3466 1861 5314 2.370 0.719 0.176 0.235 358 36.5 G_precentral 2726 1520 4829 2.386 0.589 0.153 0.100 87 12.4 G_precuneus 748 483 1757 2.654 0.699 0.188 0.132 28 4.7 G_rectus 145 100 336 3.041 1.241 0.108 0.141 13 0.1 G_subcallosal 467 220 558 2.246 0.305 0.156 0.185 22 3.0 G_temp_sup-G_T_transv 2038 1164 4381 2.718 0.557 0.177 0.156 133 13.7 G_temp_sup-Lateral 682 468 1572 2.946 0.752 0.129 0.051 7 1.4 G_temp_sup-Plan_polar 672 444 1113 2.222 0.410 0.125 0.046 6 1.3 G_temp_sup-Plan_tempo 2613 1648 6718 2.968 0.668 0.175 0.100 95 11.8 G_temporal_inf 2944 1813 6977 2.824 0.590 0.160 0.110 451 9.8 G_temporal_middle 434 293 505 1.824 0.615 0.157 0.088 6 1.8 Lat_Fis-ant-Horizont 173 118 236 1.975 0.381 0.120 0.050 1 0.4 Lat_Fis-ant-Vertical 1415 935 1779 2.067 0.518 0.136 0.048 16 3.0 Lat_Fis-post 3420 1947 4176 1.932 0.585 0.159 0.095 79 12.7 Pole_occipital 1648 1185 5481 3.078 0.779 0.223 0.462 166 10.1 Pole_temporal 2359 1601 2452 1.629 0.443 0.165 0.071 39 7.6 S_calcarine 2988 2165 3103 1.605 0.506 0.151 0.057 34 7.5 S_central 1333 900 1828 2.165 0.604 0.127 0.041 12 2.3 S_cingul-Marginalis 495 303 750 2.828 0.779 0.172 0.116 14 2.4 S_circular_insula_ant 1265 833 1910 2.508 0.795 0.125 0.094 17 5.7 S_circular_insula_inf 1269 843 1857 2.508 0.478 0.124 0.046 14 2.5 S_circular_insula_sup 1053 728 1608 2.347 0.523 0.120 0.039 7 1.7 S_collat_transv_ant 626 394 555 1.594 0.386 0.164 0.074 9 2.1 S_collat_transv_post 2091 1354 2627 2.027 0.444 0.144 0.119 874 7.6 S_front_inf 2588 1654 3537 2.079 0.462 0.155 0.092 47 8.2 S_front_middle 2418 1573 3349 2.306 0.453 0.138 0.086 77 11.0 S_front_sup 551 370 640 2.080 0.430 0.128 0.037 4 1.0 S_interm_prim-Jensen 3289 2082 4290 2.168 0.467 0.133 0.050 59 7.3 S_intrapariet_and_P_trans 1527 972 1610 1.853 0.407 0.138 0.056 17 3.5 S_oc_middle_and_Lunatus 1697 1127 2000 1.847 0.478 0.139 0.048 18 3.5 S_oc_sup_and_transversal 617 397 827 2.173 0.450 0.144 0.055 8 1.5 S_occipital_ant 687 454 837 2.043 0.470 0.128 0.045 6 1.2 S_oc-temp_lat 1184 854 1809 2.091 0.619 0.143 0.046 13 2.4 S_oc-temp_med_and_Lingual 270 191 479 2.104 0.464 0.150 0.058 4 0.7 S_orbital_lateral 578 402 741 1.840 0.575 0.147 0.090 20 2.8 S_orbital_med-olfact 1356 869 2107 2.362 0.681 0.186 0.166 77 10.7 S_orbital-H_Shaped 1842 1200 2282 1.951 0.464 0.114 0.036 14 2.8 S_parieto_occipital 1560 960 1609 2.128 0.929 0.153 0.075 66 5.2 S_pericallosal 2251 1483 2453 1.828 0.457 0.135 0.059 64 6.0 S_postcentral 1867 1276 2664 2.302 0.467 0.132 0.050 20 4.1 S_precentral-inf-part 1257 817 1490 2.055 0.560 0.136 0.058 14 2.9 S_precentral-sup-part 480 292 619 1.926 0.785 0.144 0.058 9 1.2 S_suborbital 1306 851 1686 1.967 0.496 0.140 0.064 21 3.8 S_subparietal 1610 1092 2366 2.491 0.566 0.133 0.043 16 3.1 S_temporal_inf 5759 3860 8797 2.360 0.476 0.128 0.121 442 10.6 S_temporal_sup 219 144 302 2.123 0.336 0.114 0.035 1 0.4 S_temporal_transverse #----------------------------------------- #@# Cortical Parc 3 rh Tue Dec 22 15:55:05 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 T40_OM_Post rh ../surf/rh.sphere.reg /Applications/freesurfer/average/rh.DKTatlas40.gcs ../label/rh.aparc.DKTatlas40.annot \n setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading atlas from /Applications/freesurfer/average/rh.DKTatlas40.gcs... reading color table from GCSA file.... average std = 0.9 using min determinant for regularization = 0.008 0 singular and 237 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 980 labels changed using aseg relabeling using gibbs priors... 000: 2594 changed, 132032 examined... 001: 636 changed, 11140 examined... 002: 178 changed, 3380 examined... 003: 74 changed, 1023 examined... 004: 30 changed, 435 examined... 005: 17 changed, 165 examined... 006: 11 changed, 110 examined... 007: 4 changed, 61 examined... 008: 3 changed, 19 examined... 009: 3 changed, 16 examined... 010: 1 changed, 12 examined... 011: 2 changed, 7 examined... 012: 6 changed, 12 examined... 013: 5 changed, 20 examined... 014: 6 changed, 32 examined... 015: 6 changed, 34 examined... 016: 3 changed, 26 examined... 017: 5 changed, 18 examined... 018: 3 changed, 19 examined... 019: 3 changed, 15 examined... 020: 1 changed, 17 examined... 021: 1 changed, 7 examined... 022: 1 changed, 7 examined... 023: 1 changed, 7 examined... 024: 1 changed, 7 examined... 025: 1 changed, 9 examined... 026: 1 changed, 7 examined... 027: 0 changed, 5 examined... 221 labels changed using aseg 000: 56 total segments, 23 labels (87 vertices) changed 001: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 39 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 455 vertices marked for relabeling... 455 labels changed in reclassification. writing output to ../label/rh.aparc.DKTatlas40.annot... classification took 0 minutes and 39 seconds. #----------------------------------------- #@# Parcellation Stats 3 rh Tue Dec 22 15:55:44 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_anatomical_stats -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.DKTatlas40.stats -b -a ../label/rh.aparc.DKTatlas40.annot -c ../label/aparc.annot.DKTatlas40.ctab T40_OM_Post rh white \n computing statistics for each annotation in ../label/rh.aparc.DKTatlas40.annot. reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white... reading input pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.pial... reading input white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 36 entries read (originally /Applications/freesurfer/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.DKTatlas40.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1157 769 2259 2.547 0.883 0.164 0.071 29 3.3 caudalanteriorcingulate 3494 2097 5266 2.385 0.501 0.144 0.074 58 11.8 caudalmiddlefrontal 2766 1529 3192 1.869 0.512 0.145 0.068 51 8.0 cuneus 614 402 1552 2.968 0.695 0.200 0.231 35 6.9 entorhinal 3307 2168 5753 2.326 0.649 0.165 0.089 103 10.8 fusiform 7059 4550 11831 2.359 0.556 0.148 0.057 112 17.1 inferiorparietal 5287 3469 11401 2.709 0.704 0.165 0.185 240 19.5 inferiortemporal 1398 843 2056 2.233 0.715 0.166 0.176 161 14.0 isthmuscingulate 7849 4598 10699 2.101 0.593 0.153 0.080 153 26.2 lateraloccipital 3828 2452 6553 2.383 0.753 0.201 0.223 305 32.0 lateralorbitofrontal 4043 2474 5062 1.865 0.545 0.182 0.176 198 40.2 lingual 1869 1218 3673 2.410 0.929 0.161 0.096 62 7.4 medialorbitofrontal 5753 3692 11575 2.644 0.583 0.142 0.154 858 14.9 middletemporal 791 529 1667 2.710 0.922 0.159 0.086 15 3.1 parahippocampal 2662 1611 3473 2.145 0.639 0.140 0.063 40 7.5 paracentral 2038 1315 3156 2.272 0.464 0.157 0.140 885 8.9 parsopercularis 1190 726 1906 2.184 0.577 0.189 0.129 56 6.4 parsorbitalis 2152 1349 3567 2.217 0.608 0.157 0.079 41 7.4 parstriangularis 2365 1524 2271 1.543 0.432 0.159 0.080 47 6.7 pericalcarine 6499 3934 8022 1.867 0.600 0.140 0.087 154 24.1 postcentral 1666 1084 2866 2.440 0.646 0.155 0.070 33 4.6 posteriorcingulate 7973 4988 11607 2.212 0.673 0.161 0.137 416 48.2 precentral 5710 3481 8361 2.125 0.575 0.142 0.077 125 20.1 precuneus 1070 669 2331 3.064 0.957 0.163 0.114 41 4.3 rostralanteriorcingulate 5412 3436 8932 2.280 0.553 0.167 0.129 176 29.7 rostralmiddlefrontal 13208 8121 22191 2.428 0.558 0.163 0.233 965 92.7 superiorfrontal 7517 4507 10575 2.131 0.559 0.141 0.123 310 36.6 superiorparietal 6801 4389 13572 2.600 0.654 0.150 0.088 201 26.1 superiortemporal 4723 3026 7352 2.319 0.569 0.147 0.066 89 13.2 supramarginal 597 285 677 2.170 0.321 0.141 0.153 23 3.2 transversetemporal 2807 1801 5739 2.963 0.948 0.161 0.167 85 25.0 insula #-------------------------------------------- #@# Cortical ribbon mask Tue Dec 22 15:55:59 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri \n mris_volmask --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon T40_OM_Post \n SUBJECTS_DIR is /Users/marco/Documents/T1s/pipelineT1/subjects loading input data... computing distance to left white surface computing distance to left pial surface computing distance to right white surface computing distance to right pial surface hemi masks overlap voxels = 46 writing volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/ribbon.mgz writing ribbon files #-------------------------------------------- #@# ASeg Stats Tue Dec 22 16:05:01 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post \n mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /Applications/freesurfer/ASegStatsLUT.txt --subject T40_OM_Post \n $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /Applications/freesurfer/ASegStatsLUT.txt --subject T40_OM_Post sysname Darwin hostname MacBook-Pro-di-Marco.local machine x86_64 user marco UseRobust 0 atlas_icv (eTIV) = 1401408 mm^3 (det: 1.390106 ) Computing euler number orig.nofix lheno = -128, rheno = -138 orig.nofix lhholes = 65, rhholes = 70 Loading mri/aseg.mgz Getting Brain Volume Statistics lhCtxGM: 194062.823 193510.000 diff= 552.8 pctdiff= 0.285 rhCtxGM: 198163.985 197702.000 diff= 462.0 pctdiff= 0.233 lhCtxWM: 211723.822 212153.500 diff= -429.7 pctdiff=-0.203 rhCtxWM: 218499.666 219121.500 diff= -621.8 pctdiff=-0.285 SubCortGMVol 48844.000 SupraTentVol 910954.295 (909836.000) diff=1118.295 pctdiff=0.123 SupraTentVolNotVent 872687.295 (871569.000) diff=1118.295 pctdiff=0.128 BrainSegVol 1028148.000 (1024370.000) diff=3778.000 pctdiff=0.367 BrainSegVolNotVent 984988.000 (984645.295) diff=342.705 pctdiff=0.035 BrainSegVolNotVent 984988.000 CerebellumVol 113113.000 VentChorVol 38267.000 3rd4th5thCSF 4893.000 CSFVol 1150.000, OptChiasmVol 271.000 MaskVol 1513194.000 Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 50 segmentations Computing statistics for each segmentation 3 4 Left-Lateral-Ventricle 16631 16631.000 4 5 Left-Inf-Lat-Vent 861 860.718 5 7 Left-Cerebellum-White-Matter 10215 10215.142 6 8 Left-Cerebellum-Cortex 46299 46298.945 7 10 Left-Thalamus-Proper 7112 7112.239 8 11 Left-Caudate 3697 3696.532 9 12 Left-Putamen 3842 3842.026 10 13 Left-Pallidum 1353 1352.807 11 14 3rd-Ventricle 1542 1542.378 12 15 4th-Ventricle 2361 2361.099 13 16 Brain-Stem 18770 18770.141 14 17 Left-Hippocampus 3705 3705.158 15 18 Left-Amygdala 1281 1280.841 16 24 CSF 1081 1081.099 17 26 Left-Accumbens-area 427 427.313 18 28 Left-VentralDC 3172 3172.460 19 30 Left-vessel 167 167.096 20 31 Left-choroid-plexus 1898 1897.961 23 43 Right-Lateral-Ventricle 16110 16109.813 24 44 Right-Inf-Lat-Vent 489 488.676 25 46 Right-Cerebellum-White-Matter 10449 10449.361 26 47 Right-Cerebellum-Cortex 47697 47696.559 27 49 Right-Thalamus-Proper 5853 5853.278 28 50 Right-Caudate 3384 3384.291 29 51 Right-Putamen 3677 3677.215 30 52 Right-Pallidum 1359 1359.228 31 53 Right-Hippocampus 3743 3742.920 32 54 Right-Amygdala 1277 1276.785 33 58 Right-Accumbens-area 349 349.172 34 60 Right-VentralDC 3368 3367.892 35 62 Right-vessel 110 109.809 36 63 Right-choroid-plexus 2184 2184.151 37 72 5th-Ventricle 0 0.000 38 77 WM-hypointensities 1508 1508.348 39 78 Left-WM-hypointensities 0 0.000 40 79 Right-WM-hypointensities 0 0.000 41 80 non-WM-hypointensities 30 30.302 42 81 Left-non-WM-hypointensities 0 0.000 43 82 Right-non-WM-hypointensities 0 0.000 44 85 Optic-Chiasm 243 242.805 45 251 CC_Posterior 989 988.787 46 252 CC_Mid_Posterior 304 303.817 47 253 CC_Central 333 332.722 48 254 CC_Mid_Anterior 373 373.279 49 255 CC_Anterior 650 650.473 Reporting on 45 segmentations mri_segstats done #----------------------------------------- #@# AParc-to-ASeg Tue Dec 22 16:09:04 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post \n mri_aparc2aseg --s T40_OM_Post --volmask \n SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects subject T40_OM_Post outvol /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/aparc+aseg.mgz useribbon 0 baseoffset 0 RipUnknown 0 Reading lh white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading lh pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.pial Loading lh annotations from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Reading rh white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading rh pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.pial Loading rh annotations from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/ribbon.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 389291 Used brute-force search on 0 voxels Writing output aseg to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/aparc+aseg.mgz /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post \n mri_aparc2aseg --s T40_OM_Post --volmask --a2009s \n SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects subject T40_OM_Post outvol /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/aparc.a2009s+aseg.mgz useribbon 0 baseoffset 10100 RipUnknown 0 Reading lh white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading lh pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.pial Loading lh annotations from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/lh.aparc.a2009s.annot reading colortable from annotation file... colortable with 76 entries read (originally /autofs/space/birn_044/users/christophe_atlas_rebuild//scripts_2008/Simple_surface_labels2009.txt) Reading rh white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading rh pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.pial Loading rh annotations from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/rh.aparc.a2009s.annot reading colortable from annotation file... colortable with 76 entries read (originally /autofs/space/birn_044/users/christophe_atlas_rebuild//scripts_2008/Simple_surface_labels2009.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/ribbon.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 389291 Used brute-force search on 0 voxels Writing output aseg to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/aparc.a2009s+aseg.mgz #----------------------------------------- #@# WMParc Tue Dec 22 16:11:22 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post \n mri_aparc2aseg --s T40_OM_Post --labelwm --hypo-as-wm --rip-unknown --volmask --o mri/wmparc.mgz --ctxseg aparc+aseg.mgz \n SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects subject T40_OM_Post outvol mri/wmparc.mgz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 5.000000 RipUnknown 1 CtxSeg /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/aparc+aseg.mgz Reading lh white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading lh pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.pial Loading lh annotations from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Reading rh white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading rh pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.pial Loading rh annotations from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/ribbon.mgz Loading filled from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/filled.mgz Ripping vertices labeled as unkown Ripped 8028 vertices from left hemi Ripped 8427 vertices from right hemi Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/aseg.mgz Loading Ctx Seg File /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/aparc+aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 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T40_OM_Post --surf-wm-vol --ctab /Applications/freesurfer/WMParcStatsLUT.txt --etiv \n $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject T40_OM_Post --surf-wm-vol --ctab /Applications/freesurfer/WMParcStatsLUT.txt --etiv sysname Darwin hostname MacBook-Pro-di-Marco.local machine x86_64 user marco UseRobust 0 atlas_icv (eTIV) = 1401408 mm^3 (det: 1.390106 ) Loading mri/wmparc.mgz Getting Brain Volume Statistics lhCtxGM: 194062.823 193510.000 diff= 552.8 pctdiff= 0.285 rhCtxGM: 198163.985 197702.000 diff= 462.0 pctdiff= 0.233 lhCtxWM: 211723.822 212153.500 diff= -429.7 pctdiff=-0.203 rhCtxWM: 218499.666 219121.500 diff= -621.8 pctdiff=-0.285 SubCortGMVol 48844.000 SupraTentVol 910954.295 (909836.000) diff=1118.295 pctdiff=0.123 SupraTentVolNotVent 872687.295 (871569.000) diff=1118.295 pctdiff=0.128 BrainSegVol 1028148.000 (1024370.000) diff=3778.000 pctdiff=0.367 BrainSegVolNotVent 984988.000 (984645.295) diff=342.705 pctdiff=0.035 BrainSegVolNotVent 984988.000 CerebellumVol 113113.000 VentChorVol 38267.000 3rd4th5thCSF 4893.000 CSFVol 1150.000, OptChiasmVol 271.000 MaskVol 1513194.000 Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 390 segmentations Computing statistics for each segmentation 0 3000 wm-lh-unknown 0 0.000 1 3001 wm-lh-bankssts 3159 3158.656 2 3002 wm-lh-caudalanteriorcingulate 3270 3270.447 3 3003 wm-lh-caudalmiddlefrontal 7229 7228.882 4 3004 wm-lh-corpuscallosum 0 0.000 5 3005 wm-lh-cuneus 2242 2242.036 6 3006 wm-lh-entorhinal 702 702.178 7 3007 wm-lh-fusiform 5331 5330.685 8 3008 wm-lh-inferiorparietal 8475 8475.009 9 3009 wm-lh-inferiortemporal 5368 5368.089 10 3010 wm-lh-isthmuscingulate 3731 3730.938 11 3011 wm-lh-lateraloccipital 10347 10347.418 12 3012 wm-lh-lateralorbitofrontal 5911 5910.826 13 3013 wm-lh-lingual 4203 4202.899 14 3014 wm-lh-medialorbitofrontal 3508 3507.804 15 3015 wm-lh-middletemporal 4946 4945.776 16 3016 wm-lh-parahippocampal 1220 1219.626 17 3017 wm-lh-paracentral 4554 4554.492 18 3018 wm-lh-parsopercularis 3821 3820.881 19 3019 wm-lh-parsorbitalis 715 714.970 20 3020 wm-lh-parstriangularis 2374 2373.972 21 3021 wm-lh-pericalcarine 3196 3196.011 22 3022 wm-lh-postcentral 7406 7405.927 23 3023 wm-lh-posteriorcingulate 4388 4388.024 24 3024 wm-lh-precentral 14133 14132.841 25 3025 wm-lh-precuneus 9412 9411.994 26 3026 wm-lh-rostralanteriorcingulate 2179 2178.747 27 3027 wm-lh-rostralmiddlefrontal 11846 11846.221 28 3028 wm-lh-superiorfrontal 17111 17110.848 29 3029 wm-lh-superiorparietal 13393 13392.537 30 3030 wm-lh-superiortemporal 6358 6358.042 31 3031 wm-lh-supramarginal 8453 8452.620 32 3032 wm-lh-frontalpole 145 144.754 33 3033 wm-lh-temporalpole 600 600.304 34 3034 wm-lh-transversetemporal 992 991.850 35 3035 wm-lh-insula 8398 8398.260 36 3100 wm-lh-Unknown 0 0.000 37 3101 wm-lh-Corpus_callosum 0 0.000 38 3102 wm-lh-G_and_S_Insula_ONLY_AVERAGE 0 0.000 39 3103 wm-lh-G_cingulate-Isthmus 0 0.000 40 3104 wm-lh-G_cingulate-Main_part 0 0.000 41 3105 wm-lh-G_cuneus 0 0.000 42 3106 wm-lh-G_frontal_inf-Opercular_part 0 0.000 43 3107 wm-lh-G_frontal_inf-Orbital_part 0 0.000 44 3108 wm-lh-G_frontal_inf-Triangular_part 0 0.000 45 3109 wm-lh-G_frontal_middle 0 0.000 46 3110 wm-lh-G_frontal_superior 0 0.000 47 3111 wm-lh-G_frontomarginal 0 0.000 48 3112 wm-lh-G_insular_long 0 0.000 49 3113 wm-lh-G_insular_short 0 0.000 50 3114 wm-lh-G_and_S_occipital_inferior 0 0.000 51 3115 wm-lh-G_occipital_middle 0 0.000 52 3116 wm-lh-G_occipital_superior 0 0.000 53 3117 wm-lh-G_occipit-temp_lat-Or_fusiform 0 0.000 54 3118 wm-lh-G_occipit-temp_med-Lingual_part 0 0.000 55 3119 wm-lh-G_occipit-temp_med-Parahippocampal_part 0 0.000 56 3120 wm-lh-G_orbital 0 0.000 57 3121 wm-lh-G_paracentral 0 0.000 58 3122 wm-lh-G_parietal_inferior-Angular_part 0 0.000 59 3123 wm-lh-G_parietal_inferior-Supramarginal_part 0 0.000 60 3124 wm-lh-G_parietal_superior 0 0.000 61 3125 wm-lh-G_postcentral 0 0.000 62 3126 wm-lh-G_precentral 0 0.000 63 3127 wm-lh-G_precuneus 0 0.000 64 3128 wm-lh-G_rectus 0 0.000 65 3129 wm-lh-G_subcallosal 0 0.000 66 3130 wm-lh-G_subcentral 0 0.000 67 3131 wm-lh-G_temporal_inferior 0 0.000 68 3132 wm-lh-G_temporal_middle 0 0.000 69 3133 wm-lh-G_temp_sup-G_temp_transv_and_interm_S 0 0.000 70 3134 wm-lh-G_temp_sup-Lateral_aspect 0 0.000 71 3135 wm-lh-G_temp_sup-Planum_polare 0 0.000 72 3136 wm-lh-G_temp_sup-Planum_tempolare 0 0.000 73 3137 wm-lh-G_and_S_transverse_frontopolar 0 0.000 74 3138 wm-lh-Lat_Fissure-ant_sgt-ramus_horizontal 0 0.000 75 3139 wm-lh-Lat_Fissure-ant_sgt-ramus_vertical 0 0.000 76 3140 wm-lh-Lat_Fissure-post_sgt 0 0.000 77 3141 wm-lh-Medial_wall 0 0.000 78 3142 wm-lh-Pole_occipital 0 0.000 79 3143 wm-lh-Pole_temporal 0 0.000 80 3144 wm-lh-S_calcarine 0 0.000 81 3145 wm-lh-S_central 0 0.000 82 3146 wm-lh-S_central_insula 0 0.000 83 3147 wm-lh-S_cingulate-Main_part_and_Intracingulate 0 0.000 84 3148 wm-lh-S_cingulate-Marginalis_part 0 0.000 85 3149 wm-lh-S_circular_insula_anterior 0 0.000 86 3150 wm-lh-S_circular_insula_inferior 0 0.000 87 3151 wm-lh-S_circular_insula_superior 0 0.000 88 3152 wm-lh-S_collateral_transverse_ant 0 0.000 89 3153 wm-lh-S_collateral_transverse_post 0 0.000 90 3154 wm-lh-S_frontal_inferior 0 0.000 91 3155 wm-lh-S_frontal_middle 0 0.000 92 3156 wm-lh-S_frontal_superior 0 0.000 93 3157 wm-lh-S_frontomarginal 0 0.000 94 3158 wm-lh-S_intermedius_primus-Jensen 0 0.000 95 3159 wm-lh-S_intraparietal-and_Parietal_transverse 0 0.000 96 3160 wm-lh-S_occipital_anterior 0 0.000 97 3161 wm-lh-S_occipital_middle_and_Lunatus 0 0.000 98 3162 wm-lh-S_occipital_superior_and_transversalis 0 0.000 99 3163 wm-lh-S_occipito-temporal_lateral 0 0.000 100 3164 wm-lh-S_occipito-temporal_medial_and_S_Lingual 0 0.000 101 3165 wm-lh-S_orbital-H_shapped 0 0.000 102 3166 wm-lh-S_orbital_lateral 0 0.000 103 3167 wm-lh-S_orbital_medial-Or_olfactory 0 0.000 104 3168 wm-lh-S_paracentral 0 0.000 105 3169 wm-lh-S_parieto_occipital 0 0.000 106 3170 wm-lh-S_pericallosal 0 0.000 107 3171 wm-lh-S_postcentral 0 0.000 108 3172 wm-lh-S_precentral-Inferior-part 0 0.000 109 3173 wm-lh-S_precentral-Superior-part 0 0.000 110 3174 wm-lh-S_subcentral_ant 0 0.000 111 3175 wm-lh-S_subcentral_post 0 0.000 112 3176 wm-lh-S_suborbital 0 0.000 113 3177 wm-lh-S_subparietal 0 0.000 114 3178 wm-lh-S_supracingulate 0 0.000 115 3179 wm-lh-S_temporal_inferior 0 0.000 116 3180 wm-lh-S_temporal_superior 0 0.000 117 3181 wm-lh-S_temporal_transverse 0 0.000 118 4000 wm-rh-unknown 0 0.000 119 4001 wm-rh-bankssts 2640 2639.647 120 4002 wm-rh-caudalanteriorcingulate 2961 2961.043 121 4003 wm-rh-caudalmiddlefrontal 6543 6542.842 122 4004 wm-rh-corpuscallosum 0 0.000 123 4005 wm-rh-cuneus 2366 2365.535 124 4006 wm-rh-entorhinal 739 739.124 125 4007 wm-rh-fusiform 5959 5959.158 126 4008 wm-rh-inferiorparietal 11370 11369.780 127 4009 wm-rh-inferiortemporal 5981 5981.003 128 4010 wm-rh-isthmuscingulate 3288 3287.789 129 4011 wm-rh-lateraloccipital 10394 10393.789 130 4012 wm-rh-lateralorbitofrontal 5986 5985.548 131 4013 wm-rh-lingual 4924 4923.531 132 4014 wm-rh-medialorbitofrontal 2981 2981.394 133 4015 wm-rh-middletemporal 5420 5420.164 134 4016 wm-rh-parahippocampal 1196 1196.374 135 4017 wm-rh-paracentral 5055 5055.081 136 4018 wm-rh-parsopercularis 3280 3280.340 137 4019 wm-rh-parsorbitalis 1035 1035.439 138 4020 wm-rh-parstriangularis 2954 2953.549 139 4021 wm-rh-pericalcarine 3747 3747.240 140 4022 wm-rh-postcentral 7272 7272.057 141 4023 wm-rh-posteriorcingulate 4590 4590.432 142 4024 wm-rh-precentral 16348 16348.114 143 4025 wm-rh-precuneus 9370 9369.792 144 4026 wm-rh-rostralanteriorcingulate 2612 2612.352 145 4027 wm-rh-rostralmiddlefrontal 12427 12426.705 146 4028 wm-rh-superiorfrontal 16080 16079.862 147 4029 wm-rh-superiorparietal 12348 12347.527 148 4030 wm-rh-superiortemporal 5776 5776.429 149 4031 wm-rh-supramarginal 8566 8566.415 150 4032 wm-rh-frontalpole 215 214.688 151 4033 wm-rh-temporalpole 561 560.795 152 4034 wm-rh-transversetemporal 651 651.092 153 4035 wm-rh-insula 7688 7688.272 154 4100 wm-rh-Unknown 0 0.000 155 4101 wm-rh-Corpus_callosum 0 0.000 156 4102 wm-rh-G_and_S_Insula_ONLY_AVERAGE 0 0.000 157 4103 wm-rh-G_cingulate-Isthmus 0 0.000 158 4104 wm-rh-G_cingulate-Main_part 0 0.000 159 4105 wm-rh-G_cuneus 0 0.000 160 4106 wm-rh-G_frontal_inf-Opercular_part 0 0.000 161 4107 wm-rh-G_frontal_inf-Orbital_part 0 0.000 162 4108 wm-rh-G_frontal_inf-Triangular_part 0 0.000 163 4109 wm-rh-G_frontal_middle 0 0.000 164 4110 wm-rh-G_frontal_superior 0 0.000 165 4111 wm-rh-G_frontomarginal 0 0.000 166 4112 wm-rh-G_insular_long 0 0.000 167 4113 wm-rh-G_insular_short 0 0.000 168 4114 wm-rh-G_and_S_occipital_inferior 0 0.000 169 4115 wm-rh-G_occipital_middle 0 0.000 170 4116 wm-rh-G_occipital_superior 0 0.000 171 4117 wm-rh-G_occipit-temp_lat-Or_fusiform 0 0.000 172 4118 wm-rh-G_occipit-temp_med-Lingual_part 0 0.000 173 4119 wm-rh-G_occipit-temp_med-Parahippocampal_part 0 0.000 174 4120 wm-rh-G_orbital 0 0.000 175 4121 wm-rh-G_paracentral 0 0.000 176 4122 wm-rh-G_parietal_inferior-Angular_part 0 0.000 177 4123 wm-rh-G_parietal_inferior-Supramarginal_part 0 0.000 178 4124 wm-rh-G_parietal_superior 0 0.000 179 4125 wm-rh-G_postcentral 0 0.000 180 4126 wm-rh-G_precentral 0 0.000 181 4127 wm-rh-G_precuneus 0 0.000 182 4128 wm-rh-G_rectus 0 0.000 183 4129 wm-rh-G_subcallosal 0 0.000 184 4130 wm-rh-G_subcentral 0 0.000 185 4131 wm-rh-G_temporal_inferior 0 0.000 186 4132 wm-rh-G_temporal_middle 0 0.000 187 4133 wm-rh-G_temp_sup-G_temp_transv_and_interm_S 0 0.000 188 4134 wm-rh-G_temp_sup-Lateral_aspect 0 0.000 189 4135 wm-rh-G_temp_sup-Planum_polare 0 0.000 190 4136 wm-rh-G_temp_sup-Planum_tempolare 0 0.000 191 4137 wm-rh-G_and_S_transverse_frontopolar 0 0.000 192 4138 wm-rh-Lat_Fissure-ant_sgt-ramus_horizontal 0 0.000 193 4139 wm-rh-Lat_Fissure-ant_sgt-ramus_vertical 0 0.000 194 4140 wm-rh-Lat_Fissure-post_sgt 0 0.000 195 4141 wm-rh-Medial_wall 0 0.000 196 4142 wm-rh-Pole_occipital 0 0.000 197 4143 wm-rh-Pole_temporal 0 0.000 198 4144 wm-rh-S_calcarine 0 0.000 199 4145 wm-rh-S_central 0 0.000 200 4146 wm-rh-S_central_insula 0 0.000 201 4147 wm-rh-S_cingulate-Main_part_and_Intracingulate 0 0.000 202 4148 wm-rh-S_cingulate-Marginalis_part 0 0.000 203 4149 wm-rh-S_circular_insula_anterior 0 0.000 204 4150 wm-rh-S_circular_insula_inferior 0 0.000 205 4151 wm-rh-S_circular_insula_superior 0 0.000 206 4152 wm-rh-S_collateral_transverse_ant 0 0.000 207 4153 wm-rh-S_collateral_transverse_post 0 0.000 208 4154 wm-rh-S_frontal_inferior 0 0.000 209 4155 wm-rh-S_frontal_middle 0 0.000 210 4156 wm-rh-S_frontal_superior 0 0.000 211 4157 wm-rh-S_frontomarginal 0 0.000 212 4158 wm-rh-S_intermedius_primus-Jensen 0 0.000 213 4159 wm-rh-S_intraparietal-and_Parietal_transverse 0 0.000 214 4160 wm-rh-S_occipital_anterior 0 0.000 215 4161 wm-rh-S_occipital_middle_and_Lunatus 0 0.000 216 4162 wm-rh-S_occipital_superior_and_transversalis 0 0.000 217 4163 wm-rh-S_occipito-temporal_lateral 0 0.000 218 4164 wm-rh-S_occipito-temporal_medial_and_S_Lingual 0 0.000 219 4165 wm-rh-S_orbital-H_shapped 0 0.000 220 4166 wm-rh-S_orbital_lateral 0 0.000 221 4167 wm-rh-S_orbital_medial-Or_olfactory 0 0.000 222 4168 wm-rh-S_paracentral 0 0.000 223 4169 wm-rh-S_parieto_occipital 0 0.000 224 4170 wm-rh-S_pericallosal 0 0.000 225 4171 wm-rh-S_postcentral 0 0.000 226 4172 wm-rh-S_precentral-Inferior-part 0 0.000 227 4173 wm-rh-S_precentral-Superior-part 0 0.000 228 4174 wm-rh-S_subcentral_ant 0 0.000 229 4175 wm-rh-S_subcentral_post 0 0.000 230 4176 wm-rh-S_suborbital 0 0.000 231 4177 wm-rh-S_subparietal 0 0.000 232 4178 wm-rh-S_supracingulate 0 0.000 233 4179 wm-rh-S_temporal_inferior 0 0.000 234 4180 wm-rh-S_temporal_superior 0 0.000 235 4181 wm-rh-S_temporal_transverse 0 0.000 236 5001 Left-UnsegmentedWhiteMatter 26237 26237.215 237 5002 Right-UnsegmentedWhiteMatter 28634 28633.799 238 13100 wm_lh_Unknown 0 0.000 239 13101 wm_lh_G_and_S_frontomargin 0 0.000 240 13102 wm_lh_G_and_S_occipital_inf 0 0.000 241 13103 wm_lh_G_and_S_paracentral 0 0.000 242 13104 wm_lh_G_and_S_subcentral 0 0.000 243 13105 wm_lh_G_and_S_transv_frontopol 0 0.000 244 13106 wm_lh_G_and_S_cingul-Ant 0 0.000 245 13107 wm_lh_G_and_S_cingul-Mid-Ant 0 0.000 246 13108 wm_lh_G_and_S_cingul-Mid-Post 0 0.000 247 13109 wm_lh_G_cingul-Post-dorsal 0 0.000 248 13110 wm_lh_G_cingul-Post-ventral 0 0.000 249 13111 wm_lh_G_cuneus 0 0.000 250 13112 wm_lh_G_front_inf-Opercular 0 0.000 251 13113 wm_lh_G_front_inf-Orbital 0 0.000 252 13114 wm_lh_G_front_inf-Triangul 0 0.000 253 13115 wm_lh_G_front_middle 0 0.000 254 13116 wm_lh_G_front_sup 0 0.000 255 13117 wm_lh_G_Ins_lg_and_S_cent_ins 0 0.000 256 13118 wm_lh_G_insular_short 0 0.000 257 13119 wm_lh_G_occipital_middle 0 0.000 258 13120 wm_lh_G_occipital_sup 0 0.000 259 13121 wm_lh_G_oc-temp_lat-fusifor 0 0.000 260 13122 wm_lh_G_oc-temp_med-Lingual 0 0.000 261 13123 wm_lh_G_oc-temp_med-Parahip 0 0.000 262 13124 wm_lh_G_orbital 0 0.000 263 13125 wm_lh_G_pariet_inf-Angular 0 0.000 264 13126 wm_lh_G_pariet_inf-Supramar 0 0.000 265 13127 wm_lh_G_parietal_sup 0 0.000 266 13128 wm_lh_G_postcentral 0 0.000 267 13129 wm_lh_G_precentral 0 0.000 268 13130 wm_lh_G_precuneus 0 0.000 269 13131 wm_lh_G_rectus 0 0.000 270 13132 wm_lh_G_subcallosal 0 0.000 271 13133 wm_lh_G_temp_sup-G_T_transv 0 0.000 272 13134 wm_lh_G_temp_sup-Lateral 0 0.000 273 13135 wm_lh_G_temp_sup-Plan_polar 0 0.000 274 13136 wm_lh_G_temp_sup-Plan_tempo 0 0.000 275 13137 wm_lh_G_temporal_inf 0 0.000 276 13138 wm_lh_G_temporal_middle 0 0.000 277 13139 wm_lh_Lat_Fis-ant-Horizont 0 0.000 278 13140 wm_lh_Lat_Fis-ant-Vertical 0 0.000 279 13141 wm_lh_Lat_Fis-post 0 0.000 280 13142 wm_lh_Medial_wall 0 0.000 281 13143 wm_lh_Pole_occipital 0 0.000 282 13144 wm_lh_Pole_temporal 0 0.000 283 13145 wm_lh_S_calcarine 0 0.000 284 13146 wm_lh_S_central 0 0.000 285 13147 wm_lh_S_cingul-Marginalis 0 0.000 286 13148 wm_lh_S_circular_insula_ant 0 0.000 287 13149 wm_lh_S_circular_insula_inf 0 0.000 288 13150 wm_lh_S_circular_insula_sup 0 0.000 289 13151 wm_lh_S_collat_transv_ant 0 0.000 290 13152 wm_lh_S_collat_transv_post 0 0.000 291 13153 wm_lh_S_front_inf 0 0.000 292 13154 wm_lh_S_front_middle 0 0.000 293 13155 wm_lh_S_front_sup 0 0.000 294 13156 wm_lh_S_interm_prim-Jensen 0 0.000 295 13157 wm_lh_S_intrapariet_and_P_trans 0 0.000 296 13158 wm_lh_S_oc_middle_and_Lunatus 0 0.000 297 13159 wm_lh_S_oc_sup_and_transversal 0 0.000 298 13160 wm_lh_S_occipital_ant 0 0.000 299 13161 wm_lh_S_oc-temp_lat 0 0.000 300 13162 wm_lh_S_oc-temp_med_and_Lingual 0 0.000 301 13163 wm_lh_S_orbital_lateral 0 0.000 302 13164 wm_lh_S_orbital_med-olfact 0 0.000 303 13165 wm_lh_S_orbital-H_Shaped 0 0.000 304 13166 wm_lh_S_parieto_occipital 0 0.000 305 13167 wm_lh_S_pericallosal 0 0.000 306 13168 wm_lh_S_postcentral 0 0.000 307 13169 wm_lh_S_precentral-inf-part 0 0.000 308 13170 wm_lh_S_precentral-sup-part 0 0.000 309 13171 wm_lh_S_suborbital 0 0.000 310 13172 wm_lh_S_subparietal 0 0.000 311 13173 wm_lh_S_temporal_inf 0 0.000 312 13174 wm_lh_S_temporal_sup 0 0.000 313 13175 wm_lh_S_temporal_transverse 0 0.000 314 14100 wm_rh_Unknown 0 0.000 315 14101 wm_rh_G_and_S_frontomargin 0 0.000 316 14102 wm_rh_G_and_S_occipital_inf 0 0.000 317 14103 wm_rh_G_and_S_paracentral 0 0.000 318 14104 wm_rh_G_and_S_subcentral 0 0.000 319 14105 wm_rh_G_and_S_transv_frontopol 0 0.000 320 14106 wm_rh_G_and_S_cingul-Ant 0 0.000 321 14107 wm_rh_G_and_S_cingul-Mid-Ant 0 0.000 322 14108 wm_rh_G_and_S_cingul-Mid-Post 0 0.000 323 14109 wm_rh_G_cingul-Post-dorsal 0 0.000 324 14110 wm_rh_G_cingul-Post-ventral 0 0.000 325 14111 wm_rh_G_cuneus 0 0.000 326 14112 wm_rh_G_front_inf-Opercular 0 0.000 327 14113 wm_rh_G_front_inf-Orbital 0 0.000 328 14114 wm_rh_G_front_inf-Triangul 0 0.000 329 14115 wm_rh_G_front_middle 0 0.000 330 14116 wm_rh_G_front_sup 0 0.000 331 14117 wm_rh_G_Ins_lg_and_S_cent_ins 0 0.000 332 14118 wm_rh_G_insular_short 0 0.000 333 14119 wm_rh_G_occipital_middle 0 0.000 334 14120 wm_rh_G_occipital_sup 0 0.000 335 14121 wm_rh_G_oc-temp_lat-fusifor 0 0.000 336 14122 wm_rh_G_oc-temp_med-Lingual 0 0.000 337 14123 wm_rh_G_oc-temp_med-Parahip 0 0.000 338 14124 wm_rh_G_orbital 0 0.000 339 14125 wm_rh_G_pariet_inf-Angular 0 0.000 340 14126 wm_rh_G_pariet_inf-Supramar 0 0.000 341 14127 wm_rh_G_parietal_sup 0 0.000 342 14128 wm_rh_G_postcentral 0 0.000 343 14129 wm_rh_G_precentral 0 0.000 344 14130 wm_rh_G_precuneus 0 0.000 345 14131 wm_rh_G_rectus 0 0.000 346 14132 wm_rh_G_subcallosal 0 0.000 347 14133 wm_rh_G_temp_sup-G_T_transv 0 0.000 348 14134 wm_rh_G_temp_sup-Lateral 0 0.000 349 14135 wm_rh_G_temp_sup-Plan_polar 0 0.000 350 14136 wm_rh_G_temp_sup-Plan_tempo 0 0.000 351 14137 wm_rh_G_temporal_inf 0 0.000 352 14138 wm_rh_G_temporal_middle 0 0.000 353 14139 wm_rh_Lat_Fis-ant-Horizont 0 0.000 354 14140 wm_rh_Lat_Fis-ant-Vertical 0 0.000 355 14141 wm_rh_Lat_Fis-post 0 0.000 356 14142 wm_rh_Medial_wall 0 0.000 357 14143 wm_rh_Pole_occipital 0 0.000 358 14144 wm_rh_Pole_temporal 0 0.000 359 14145 wm_rh_S_calcarine 0 0.000 360 14146 wm_rh_S_central 0 0.000 361 14147 wm_rh_S_cingul-Marginalis 0 0.000 362 14148 wm_rh_S_circular_insula_ant 0 0.000 363 14149 wm_rh_S_circular_insula_inf 0 0.000 364 14150 wm_rh_S_circular_insula_sup 0 0.000 365 14151 wm_rh_S_collat_transv_ant 0 0.000 366 14152 wm_rh_S_collat_transv_post 0 0.000 367 14153 wm_rh_S_front_inf 0 0.000 368 14154 wm_rh_S_front_middle 0 0.000 369 14155 wm_rh_S_front_sup 0 0.000 370 14156 wm_rh_S_interm_prim-Jensen 0 0.000 371 14157 wm_rh_S_intrapariet_and_P_trans 0 0.000 372 14158 wm_rh_S_oc_middle_and_Lunatus 0 0.000 373 14159 wm_rh_S_oc_sup_and_transversal 0 0.000 374 14160 wm_rh_S_occipital_ant 0 0.000 375 14161 wm_rh_S_oc-temp_lat 0 0.000 376 14162 wm_rh_S_oc-temp_med_and_Lingual 0 0.000 377 14163 wm_rh_S_orbital_lateral 0 0.000 378 14164 wm_rh_S_orbital_med-olfact 0 0.000 379 14165 wm_rh_S_orbital-H_Shaped 0 0.000 380 14166 wm_rh_S_parieto_occipital 0 0.000 381 14167 wm_rh_S_pericallosal 0 0.000 382 14168 wm_rh_S_postcentral 0 0.000 383 14169 wm_rh_S_precentral-inf-part 0 0.000 384 14170 wm_rh_S_precentral-sup-part 0 0.000 385 14171 wm_rh_S_suborbital 0 0.000 386 14172 wm_rh_S_subparietal 0 0.000 387 14173 wm_rh_S_temporal_inf 0 0.000 388 14174 wm_rh_S_temporal_sup 0 0.000 389 14175 wm_rh_S_temporal_transverse 0 0.000 Reporting on 70 segmentations mri_segstats done /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label #-------------------------------------------- #@# BA Labels lh Tue Dec 22 16:21:00 EET 2015 \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA1.label --trgsubject T40_OM_Post --trglabel ./lh.BA1.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA1.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA1.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 4129 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4129 nlabel points Performing mapping from target back to the source label 130255 Number of reverse mapping hits = 291 Checking for and removing duplicates Writing label file ./lh.BA1.label 4420 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA2.label --trgsubject T40_OM_Post --trglabel ./lh.BA2.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA2.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA2.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 7909 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 7909 nlabel points Performing mapping from target back to the source label 130255 Number of reverse mapping hits = 480 Checking for and removing duplicates Writing label file ./lh.BA2.label 8389 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA3a.label --trgsubject T40_OM_Post --trglabel ./lh.BA3a.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA3a.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA3a.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 4077 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4077 nlabel points Performing mapping from target back to the source label 130255 Number of reverse mapping hits = 88 Checking for and removing duplicates Writing label file ./lh.BA3a.label 4165 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA3b.label --trgsubject T40_OM_Post --trglabel ./lh.BA3b.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA3b.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA3b.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 5983 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5983 nlabel points Performing mapping from target back to the source label 130255 Number of reverse mapping hits = 249 Checking for and removing duplicates Writing label file ./lh.BA3b.label 6232 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA4a.label --trgsubject T40_OM_Post --trglabel ./lh.BA4a.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA4a.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA4a.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 5784 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5784 nlabel points Performing mapping from target back to the source label 130255 Number of reverse mapping hits = 604 Checking for and removing duplicates Writing label file ./lh.BA4a.label 6388 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA4p.label --trgsubject T40_OM_Post --trglabel ./lh.BA4p.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA4p.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA4p.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 4070 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4070 nlabel points Performing mapping from target back to the source label 130255 Number of reverse mapping hits = 161 Checking for and removing duplicates Writing label file ./lh.BA4p.label 4231 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA6.label --trgsubject T40_OM_Post --trglabel ./lh.BA6.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA6.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA6.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 13589 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 13589 nlabel points Performing mapping from target back to the source label 130255 Number of reverse mapping hits = 2126 Checking for and removing duplicates Writing label file ./lh.BA6.label 15715 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA44.label --trgsubject T40_OM_Post --trglabel ./lh.BA44.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA44.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA44.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 4181 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4181 nlabel points Performing mapping from target back to the source label 130255 Number of reverse mapping hits = 813 Checking for and removing duplicates Writing label file ./lh.BA44.label 4994 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA45.label --trgsubject T40_OM_Post --trglabel ./lh.BA45.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA45.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA45.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 3422 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3422 nlabel points Performing mapping from target back to the source label 130255 Number of reverse mapping hits = 859 Checking for and removing duplicates Writing label file ./lh.BA45.label 4281 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.V1.label --trgsubject T40_OM_Post --trglabel ./lh.V1.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.V1.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.V1.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 4641 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4641 nlabel points Performing mapping from target back to the source label 130255 Number of reverse mapping hits = 1405 Checking for and removing duplicates Writing label file ./lh.V1.label 6046 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.V2.label --trgsubject T40_OM_Post --trglabel ./lh.V2.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.V2.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.V2.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 8114 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 8114 nlabel points Performing mapping from target back to the source label 130255 Number of reverse mapping hits = 3047 Checking for and removing duplicates Writing label file ./lh.V2.label 11161 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.MT.label --trgsubject T40_OM_Post --trglabel ./lh.MT.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.MT.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.MT.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 2018 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2018 nlabel points Performing mapping from target back to the source label 130255 Number of reverse mapping hits = 369 Checking for and removing duplicates Writing label file ./lh.MT.label 2387 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.perirhinal.label --trgsubject T40_OM_Post --trglabel ./lh.perirhinal.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.perirhinal.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.perirhinal.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 1199 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1199 nlabel points Performing mapping from target back to the source label 130255 Number of reverse mapping hits = 145 Checking for and removing duplicates Writing label file ./lh.perirhinal.label 1344 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA1.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.BA1.thresh.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA1.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA1.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 1014 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1014 nlabel points Performing mapping from target back to the source label 130255 Number of reverse mapping hits = 91 Checking for and removing duplicates Writing label file ./lh.BA1.thresh.label 1105 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA2.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.BA2.thresh.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA2.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA2.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 2092 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2092 nlabel points Performing mapping from target back to the source label 130255 Number of reverse mapping hits = 195 Checking for and removing duplicates Writing label file ./lh.BA2.thresh.label 2287 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA3a.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.BA3a.thresh.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA3a.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA3a.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 1504 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1504 nlabel points Performing mapping from target back to the source label 130255 Number of reverse mapping hits = 35 Checking for and removing duplicates Writing label file ./lh.BA3a.thresh.label 1539 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA3b.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.BA3b.thresh.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA3b.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA3b.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 1996 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1996 nlabel points Performing mapping from target back to the source label 130255 Number of reverse mapping hits = 68 Checking for and removing duplicates Writing label file ./lh.BA3b.thresh.label 2064 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA4a.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.BA4a.thresh.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA4a.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA4a.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 2319 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2319 nlabel points Performing mapping from target back to the source label 130255 Number of reverse mapping hits = 207 Checking for and removing duplicates Writing label file ./lh.BA4a.thresh.label 2526 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA4p.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.BA4p.thresh.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA4p.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA4p.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 1549 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1549 nlabel points Performing mapping from target back to the source label 130255 Number of reverse mapping hits = 34 Checking for and removing duplicates Writing label file ./lh.BA4p.thresh.label 1583 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA6.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.BA6.thresh.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA6.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA6.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 7035 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 7035 nlabel points Performing mapping from target back to the source label 130255 Number of reverse mapping hits = 1029 Checking for and removing duplicates Writing label file ./lh.BA6.thresh.label 8064 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA44.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.BA44.thresh.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA44.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA44.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 1912 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1912 nlabel points Performing mapping from target back to the source label 130255 Number of reverse mapping hits = 349 Checking for and removing duplicates Writing label file ./lh.BA44.thresh.label 2261 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA45.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.BA45.thresh.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA45.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA45.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 1151 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1151 nlabel points Performing mapping from target back to the source label 130255 Number of reverse mapping hits = 347 Checking for and removing duplicates Writing label file ./lh.BA45.thresh.label 1498 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.V1.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.V1.thresh.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.V1.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.V1.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 3405 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3405 nlabel points Performing mapping from target back to the source label 130255 Number of reverse mapping hits = 877 Checking for and removing duplicates Writing label file ./lh.V1.thresh.label 4282 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.V2.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.V2.thresh.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.V2.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.V2.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 3334 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3334 nlabel points Performing mapping from target back to the source label 130255 Number of reverse mapping hits = 1555 Checking for and removing duplicates Writing label file ./lh.V2.thresh.label 4889 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.MT.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.MT.thresh.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.MT.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.MT.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 513 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 513 nlabel points Performing mapping from target back to the source label 130255 Number of reverse mapping hits = 66 Checking for and removing duplicates Writing label file ./lh.MT.thresh.label 579 mri_label2label: Done \n mris_label2annot --s T40_OM_Post --hemi lh --ctab /Applications/freesurfer/average/colortable_BA.txt --l lh.BA1.label --l lh.BA2.label --l lh.BA3a.label --l lh.BA3b.label --l lh.BA4a.label --l lh.BA4p.label --l lh.BA6.label --l lh.BA44.label --l lh.BA45.label --l lh.V1.label --l lh.V2.label --l lh.MT.label --l lh.perirhinal.label --a BA --maxstatwinner --noverbose \n Reading ctab /Applications/freesurfer/average/colortable_BA.txt Number of ctab entries 14 $Id: mris_label2annot.c,v 1.17 2011/03/02 00:04:32 nicks Exp $ cwd /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label cmdline mris_label2annot --s T40_OM_Post --hemi lh --ctab /Applications/freesurfer/average/colortable_BA.txt --l lh.BA1.label --l lh.BA2.label --l lh.BA3a.label --l lh.BA3b.label --l lh.BA4a.label --l lh.BA4p.label --l lh.BA6.label --l lh.BA44.label --l lh.BA45.label --l lh.V1.label --l lh.V2.label --l lh.MT.label --l lh.perirhinal.label --a BA --maxstatwinner --noverbose sysname Darwin hostname MacBook-Pro-di-Marco.local machine x86_64 user marco subject T40_OM_Post hemi lh SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects ColorTable /Applications/freesurfer/average/colortable_BA.txt AnnotName BA nlables 13 LabelThresh 0 0.000000 Loading /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.orig 1 1530880 BA1 2 16749699 BA2 3 16711680 BA3a 4 3368703 BA3b 5 1376196 BA4a 6 13382655 BA4p 7 10036737 BA6 8 2490521 BA44 9 39283 BA45 10 3993 V1 11 8508928 V2 12 10027163 MT 13 16422433 perirhinal Mapping unhit to unknown Found 90087 unhit vertices Writing annot to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/lh.BA.annot \n mris_label2annot --s T40_OM_Post --hemi lh --ctab /Applications/freesurfer/average/colortable_BA.txt --l lh.BA1.thresh.label --l lh.BA2.thresh.label --l lh.BA3a.thresh.label --l lh.BA3b.thresh.label --l lh.BA4a.thresh.label --l lh.BA4p.thresh.label --l lh.BA6.thresh.label --l lh.BA44.thresh.label --l lh.BA45.thresh.label --l lh.V1.thresh.label --l lh.V2.thresh.label --l lh.MT.thresh.label --a BA.thresh --maxstatwinner --noverbose \n Reading ctab /Applications/freesurfer/average/colortable_BA.txt Number of ctab entries 14 $Id: mris_label2annot.c,v 1.17 2011/03/02 00:04:32 nicks Exp $ cwd /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label cmdline mris_label2annot --s T40_OM_Post --hemi lh --ctab /Applications/freesurfer/average/colortable_BA.txt --l lh.BA1.thresh.label --l lh.BA2.thresh.label --l lh.BA3a.thresh.label --l lh.BA3b.thresh.label --l lh.BA4a.thresh.label --l lh.BA4p.thresh.label --l lh.BA6.thresh.label --l lh.BA44.thresh.label --l lh.BA45.thresh.label --l lh.V1.thresh.label --l lh.V2.thresh.label --l lh.MT.thresh.label --a BA.thresh --maxstatwinner --noverbose sysname Darwin hostname MacBook-Pro-di-Marco.local machine x86_64 user marco subject T40_OM_Post hemi lh SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects ColorTable /Applications/freesurfer/average/colortable_BA.txt AnnotName BA.thresh nlables 12 LabelThresh 0 0.000000 Loading /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.orig 1 1530880 BA1 2 16749699 BA2 3 16711680 BA3a 4 3368703 BA3b 5 1376196 BA4a 6 13382655 BA4p 7 10036737 BA6 8 2490521 BA44 9 39283 BA45 10 3993 V1 11 8508928 V2 12 10027163 MT Mapping unhit to unknown Found 108161 unhit vertices Writing annot to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/lh.BA.thresh.annot \n mris_anatomical_stats -mgz -f ../stats/lh.BA.stats -b -a ./lh.BA.annot -c ./BA.ctab T40_OM_Post lh white \n computing statistics for each annotation in ./lh.BA.annot. reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white... reading input pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.pial... reading input white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white... INFO: assuming MGZ format for volumes. reading colortable from annotation file... colortable with 14 entries read (originally /Applications/freesurfer/average/colortable_BA.txt) Saving annotation colortable ./BA.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1045 512 1307 1.990 0.471 0.167 0.105 37 5.0 BA1 3881 2341 4731 2.031 0.514 0.134 0.060 66 10.2 BA2 914 664 829 1.623 0.382 0.181 0.081 14 3.0 BA3a 2182 1363 2607 1.705 0.546 0.136 0.059 30 5.8 BA3b 1840 1056 2721 2.269 0.706 0.158 0.096 85 8.1 BA4a 1137 832 1450 1.821 0.733 0.155 0.064 15 3.5 BA4p 10550 5801 16718 2.522 0.657 0.154 0.150 432 51.9 BA6 2238 1484 3743 2.306 0.531 0.140 0.061 33 5.1 BA44 2436 1664 4231 2.198 0.510 0.143 0.063 50 5.5 BA45 2926 1959 3329 1.642 0.522 0.172 0.088 69 10.4 V1 8522 4863 10070 1.928 0.513 0.160 0.090 201 32.1 V2 1564 1056 2626 2.268 0.538 0.152 0.056 24 3.4 MT 933 625 2496 2.941 0.976 0.170 0.092 23 3.6 perirhinal \n mris_anatomical_stats -mgz -f ../stats/lh.BA.thresh.stats -b -a ./lh.BA.thresh.annot -c ./BA.thresh.ctab T40_OM_Post lh white \n computing statistics for each annotation in ./lh.BA.thresh.annot. reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white... reading input pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.pial... reading input white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white... INFO: assuming MGZ format for volumes. reading colortable from annotation file... colortable with 14 entries read (originally /Applications/freesurfer/average/colortable_BA.txt) Saving annotation colortable ./BA.thresh.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 700 300 814 2.026 0.438 0.174 0.121 31 3.8 BA1 1647 906 2063 2.121 0.513 0.129 0.071 39 5.1 BA2 765 563 665 1.597 0.314 0.194 0.086 13 2.7 BA3a 1350 901 1418 1.500 0.337 0.125 0.046 13 2.9 BA3b 1590 960 2327 2.161 0.778 0.155 0.080 37 5.3 BA4a 925 697 1222 1.851 0.708 0.152 0.061 12 2.7 BA4p 5894 3178 9543 2.583 0.706 0.156 0.185 269 30.0 BA6 1730 1039 2570 2.243 0.547 0.150 0.096 137 8.5 BA44 1278 789 2348 2.331 0.517 0.151 0.090 46 4.8 BA45 2780 1918 3342 1.668 0.520 0.175 0.084 63 9.1 V1 2978 1884 3712 1.862 0.498 0.167 0.078 64 8.7 V2 457 308 639 2.133 0.437 0.155 0.063 6 1.2 MT #-------------------------------------------- #@# BA Labels rh Tue Dec 22 16:24:24 EET 2015 \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA1.label --trgsubject T40_OM_Post --trglabel ./rh.BA1.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA1.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA1.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 3962 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3962 nlabel points Performing mapping from target back to the source label 132032 Number of reverse mapping hits = 351 Checking for and removing duplicates Writing label file ./rh.BA1.label 4313 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA2.label --trgsubject T40_OM_Post --trglabel ./rh.BA2.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA2.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA2.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 6687 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6687 nlabel points Performing mapping from target back to the source label 132032 Number of reverse mapping hits = 361 Checking for and removing duplicates Writing label file ./rh.BA2.label 7048 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA3a.label --trgsubject T40_OM_Post --trglabel ./rh.BA3a.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA3a.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA3a.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 3980 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3980 nlabel points Performing mapping from target back to the source label 132032 Number of reverse mapping hits = 153 Checking for and removing duplicates Writing label file ./rh.BA3a.label 4133 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA3b.label --trgsubject T40_OM_Post --trglabel ./rh.BA3b.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA3b.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA3b.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 4522 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4522 nlabel points Performing mapping from target back to the source label 132032 Number of reverse mapping hits = 318 Checking for and removing duplicates Writing label file ./rh.BA3b.label 4840 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA4a.label --trgsubject T40_OM_Post --trglabel ./rh.BA4a.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA4a.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA4a.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 5747 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5747 nlabel points Performing mapping from target back to the source label 132032 Number of reverse mapping hits = 604 Checking for and removing duplicates Writing label file ./rh.BA4a.label 6351 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA4p.label --trgsubject T40_OM_Post --trglabel ./rh.BA4p.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA4p.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA4p.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 4473 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4473 nlabel points Performing mapping from target back to the source label 132032 Number of reverse mapping hits = 235 Checking for and removing duplicates Writing label file ./rh.BA4p.label 4708 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA6.label --trgsubject T40_OM_Post --trglabel ./rh.BA6.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA6.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA6.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 12256 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 12256 nlabel points Performing mapping from target back to the source label 132032 Number of reverse mapping hits = 1525 Checking for and removing duplicates Writing label file ./rh.BA6.label 13781 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA44.label --trgsubject T40_OM_Post --trglabel ./rh.BA44.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA44.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA44.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 6912 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6912 nlabel points Performing mapping from target back to the source label 132032 Number of reverse mapping hits = 977 Checking for and removing duplicates Writing label file ./rh.BA44.label 7889 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA45.label --trgsubject T40_OM_Post --trglabel ./rh.BA45.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA45.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA45.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 5355 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5355 nlabel points Performing mapping from target back to the source label 132032 Number of reverse mapping hits = 1005 Checking for and removing duplicates Writing label file ./rh.BA45.label 6360 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.V1.label --trgsubject T40_OM_Post --trglabel ./rh.V1.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.V1.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.V1.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 4727 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4727 nlabel points Performing mapping from target back to the source label 132032 Number of reverse mapping hits = 1760 Checking for and removing duplicates Writing label file ./rh.V1.label 6487 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.V2.label --trgsubject T40_OM_Post --trglabel ./rh.V2.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.V2.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.V2.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 8016 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 8016 nlabel points Performing mapping from target back to the source label 132032 Number of reverse mapping hits = 3236 Checking for and removing duplicates Writing label file ./rh.V2.label 11252 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.MT.label --trgsubject T40_OM_Post --trglabel ./rh.MT.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.MT.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.MT.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 1932 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1932 nlabel points Performing mapping from target back to the source label 132032 Number of reverse mapping hits = 342 Checking for and removing duplicates Writing label file ./rh.MT.label 2274 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.perirhinal.label --trgsubject T40_OM_Post --trglabel ./rh.perirhinal.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.perirhinal.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.perirhinal.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 752 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 752 nlabel points Performing mapping from target back to the source label 132032 Number of reverse mapping hits = 71 Checking for and removing duplicates Writing label file ./rh.perirhinal.label 823 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA1.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.BA1.thresh.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA1.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA1.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 876 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 876 nlabel points Performing mapping from target back to the source label 132032 Number of reverse mapping hits = 94 Checking for and removing duplicates Writing label file ./rh.BA1.thresh.label 970 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA2.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.BA2.thresh.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA2.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA2.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 2688 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2688 nlabel points Performing mapping from target back to the source label 132032 Number of reverse mapping hits = 122 Checking for and removing duplicates Writing label file ./rh.BA2.thresh.label 2810 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA3a.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.BA3a.thresh.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA3a.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA3a.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 1698 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1698 nlabel points Performing mapping from target back to the source label 132032 Number of reverse mapping hits = 59 Checking for and removing duplicates Writing label file ./rh.BA3a.thresh.label 1757 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA3b.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.BA3b.thresh.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA3b.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA3b.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 2183 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2183 nlabel points Performing mapping from target back to the source label 132032 Number of reverse mapping hits = 138 Checking for and removing duplicates Writing label file ./rh.BA3b.thresh.label 2321 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA4a.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.BA4a.thresh.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA4a.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA4a.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 1388 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1388 nlabel points Performing mapping from target back to the source label 132032 Number of reverse mapping hits = 191 Checking for and removing duplicates Writing label file ./rh.BA4a.thresh.label 1579 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA4p.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.BA4p.thresh.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA4p.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA4p.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 1489 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1489 nlabel points Performing mapping from target back to the source label 132032 Number of reverse mapping hits = 59 Checking for and removing duplicates Writing label file ./rh.BA4p.thresh.label 1548 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA6.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.BA6.thresh.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA6.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA6.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 6959 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6959 nlabel points Performing mapping from target back to the source label 132032 Number of reverse mapping hits = 738 Checking for and removing duplicates Writing label file ./rh.BA6.thresh.label 7697 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA44.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.BA44.thresh.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA44.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA44.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 1012 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1012 nlabel points Performing mapping from target back to the source label 132032 Number of reverse mapping hits = 130 Checking for and removing duplicates Writing label file ./rh.BA44.thresh.label 1142 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA45.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.BA45.thresh.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA45.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA45.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 1178 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1178 nlabel points Performing mapping from target back to the source label 132032 Number of reverse mapping hits = 216 Checking for and removing duplicates Writing label file ./rh.BA45.thresh.label 1394 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.V1.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.V1.thresh.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.V1.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.V1.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 3232 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3232 nlabel points Performing mapping from target back to the source label 132032 Number of reverse mapping hits = 1174 Checking for and removing duplicates Writing label file ./rh.V1.thresh.label 4406 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.V2.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.V2.thresh.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.V2.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.V2.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 3437 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3437 nlabel points Performing mapping from target back to the source label 132032 Number of reverse mapping hits = 1513 Checking for and removing duplicates Writing label file ./rh.V2.thresh.label 4950 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.MT.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.MT.thresh.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.MT.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.MT.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 268 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 268 nlabel points Performing mapping from target back to the source label 132032 Number of reverse mapping hits = 19 Checking for and removing duplicates Writing label file ./rh.MT.thresh.label 287 mri_label2label: Done \n mris_label2annot --s T40_OM_Post --hemi rh --ctab /Applications/freesurfer/average/colortable_BA.txt --l rh.BA1.label --l rh.BA2.label --l rh.BA3a.label --l rh.BA3b.label --l rh.BA4a.label --l rh.BA4p.label --l rh.BA6.label --l rh.BA44.label --l rh.BA45.label --l rh.V1.label --l rh.V2.label --l rh.MT.label --l rh.perirhinal.label --a BA --maxstatwinner --noverbose \n Reading ctab /Applications/freesurfer/average/colortable_BA.txt Number of ctab entries 14 $Id: mris_label2annot.c,v 1.17 2011/03/02 00:04:32 nicks Exp $ cwd /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label cmdline mris_label2annot --s T40_OM_Post --hemi rh --ctab /Applications/freesurfer/average/colortable_BA.txt --l rh.BA1.label --l rh.BA2.label --l rh.BA3a.label --l rh.BA3b.label --l rh.BA4a.label --l rh.BA4p.label --l rh.BA6.label --l rh.BA44.label --l rh.BA45.label --l rh.V1.label --l rh.V2.label --l rh.MT.label --l rh.perirhinal.label --a BA --maxstatwinner --noverbose sysname Darwin hostname MacBook-Pro-di-Marco.local machine x86_64 user marco subject T40_OM_Post hemi rh SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects ColorTable /Applications/freesurfer/average/colortable_BA.txt AnnotName BA nlables 13 LabelThresh 0 0.000000 Loading /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.orig 1 1530880 BA1 2 16749699 BA2 3 16711680 BA3a 4 3368703 BA3b 5 1376196 BA4a 6 13382655 BA4p 7 10036737 BA6 8 2490521 BA44 9 39283 BA45 10 3993 V1 11 8508928 V2 12 10027163 MT 13 16422433 perirhinal Mapping unhit to unknown Found 90631 unhit vertices Writing annot to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/rh.BA.annot \n mris_label2annot --s T40_OM_Post --hemi rh --ctab /Applications/freesurfer/average/colortable_BA.txt --l rh.BA1.thresh.label --l rh.BA2.thresh.label --l rh.BA3a.thresh.label --l rh.BA3b.thresh.label --l rh.BA4a.thresh.label --l rh.BA4p.thresh.label --l rh.BA6.thresh.label --l rh.BA44.thresh.label --l rh.BA45.thresh.label --l rh.V1.thresh.label --l rh.V2.thresh.label --l rh.MT.thresh.label --a BA.thresh --maxstatwinner --noverbose \n Reading ctab /Applications/freesurfer/average/colortable_BA.txt Number of ctab entries 14 $Id: mris_label2annot.c,v 1.17 2011/03/02 00:04:32 nicks Exp $ cwd /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label cmdline mris_label2annot --s T40_OM_Post --hemi rh --ctab /Applications/freesurfer/average/colortable_BA.txt --l rh.BA1.thresh.label --l rh.BA2.thresh.label --l rh.BA3a.thresh.label --l rh.BA3b.thresh.label --l rh.BA4a.thresh.label --l rh.BA4p.thresh.label --l rh.BA6.thresh.label --l rh.BA44.thresh.label --l rh.BA45.thresh.label --l rh.V1.thresh.label --l rh.V2.thresh.label --l rh.MT.thresh.label --a BA.thresh --maxstatwinner --noverbose sysname Darwin hostname MacBook-Pro-di-Marco.local machine x86_64 user marco subject T40_OM_Post hemi rh SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects ColorTable /Applications/freesurfer/average/colortable_BA.txt AnnotName BA.thresh nlables 12 LabelThresh 0 0.000000 Loading /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.orig 1 1530880 BA1 2 16749699 BA2 3 16711680 BA3a 4 3368703 BA3b 5 1376196 BA4a 6 13382655 BA4p 7 10036737 BA6 8 2490521 BA44 9 39283 BA45 10 3993 V1 11 8508928 V2 12 10027163 MT Mapping unhit to unknown Found 110023 unhit vertices Writing annot to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/rh.BA.thresh.annot \n mris_anatomical_stats -mgz -f ../stats/rh.BA.stats -b -a ./rh.BA.annot -c ./BA.ctab T40_OM_Post rh white \n computing statistics for each annotation in ./rh.BA.annot. reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white... reading input pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.pial... reading input white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white... INFO: assuming MGZ format for volumes. reading colortable from annotation file... colortable with 14 entries read (originally /Applications/freesurfer/average/colortable_BA.txt) Saving annotation colortable ./BA.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 948 493 1514 2.294 0.462 0.171 0.202 52 6.1 BA1 3093 1933 3667 1.880 0.476 0.132 0.064 96 9.5 BA2 1037 758 900 1.518 0.306 0.178 0.073 15 3.0 BA3a 2101 1276 2114 1.492 0.437 0.129 0.079 37 8.6 BA3b 1854 1083 2615 2.204 0.723 0.151 0.106 56 10.4 BA4a 1187 867 1543 1.846 0.599 0.171 0.072 17 4.0 BA4p 8516 4846 13195 2.445 0.615 0.164 0.342 914 86.1 BA6 3940 2587 6119 2.288 0.489 0.143 0.062 57 10.4 BA44 4112 2538 6583 2.163 0.567 0.172 0.126 966 19.2 BA45 3736 2379 4419 1.709 0.571 0.167 0.087 84 12.3 V1 8693 4962 9756 1.857 0.486 0.163 0.124 284 55.7 V2 1577 1056 2471 2.151 0.503 0.143 0.058 21 3.5 MT 607 413 1577 2.970 0.691 0.187 0.185 27 6.5 perirhinal \n mris_anatomical_stats -mgz -f ../stats/rh.BA.thresh.stats -b -a ./rh.BA.thresh.annot -c ./BA.thresh.ctab T40_OM_Post rh white \n computing statistics for each annotation in ./rh.BA.thresh.annot. reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white... reading input pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.pial... reading input white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white... INFO: assuming MGZ format for volumes. reading colortable from annotation file... colortable with 14 entries read (originally /Applications/freesurfer/average/colortable_BA.txt) Saving annotation colortable ./BA.thresh.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 713 349 1039 2.222 0.484 0.178 0.139 45 5.4 BA1 1788 1085 2052 1.821 0.484 0.126 0.050 21 3.9 BA2 972 694 788 1.524 0.309 0.176 0.072 14 2.8 BA3a 1568 1049 1496 1.350 0.320 0.120 0.041 15 2.7 BA3b 1157 659 1612 2.213 0.836 0.162 0.131 46 8.4 BA4a 960 745 1246 1.773 0.604 0.185 0.079 14 3.6 BA4p 5294 3012 8235 2.430 0.645 0.164 0.178 358 43.5 BA6 836 550 1450 2.309 0.526 0.162 0.085 16 2.7 BA44 1134 699 2202 2.421 0.561 0.161 0.084 26 4.1 BA45 2890 1974 3601 1.698 0.563 0.172 0.092 68 9.1 V1 4482 2573 5016 1.814 0.474 0.174 0.096 108 18.4 V2 215 138 367 2.301 0.474 0.130 0.042 2 0.3 MT /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label #-------------------------------------------- #@# Ex-vivo Entorhinal Cortex Label lh Tue Dec 22 16:27:50 EET 2015 \n mris_spherical_average -erode 1 -orig white -t 0.4 -o T40_OM_Post label lh.entorhinal lh sphere.reg lh.EC_average lh.entorhinal_exvivo.label \n painting output onto subject T40_OM_Post. processing subject lh.EC_average... reading output surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg... eroding label 1 times before writing thresholding label stat at 0.400 before writing only 1 subject - copying statistics... writing label with 952 points to lh.entorhinal_exvivo.label... \n mris_anatomical_stats -mgz -f ../stats/lh.entorhinal_exvivo.stats -b -l ./lh.entorhinal_exvivo.label T40_OM_Post lh white \n limiting computations to label ./lh.entorhinal_exvivo.label. reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white... reading input pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.pial... reading input white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white... INFO: assuming MGZ format for volumes. table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 350 213 955 2.739 0.842 0.165 0.096 9 1.6 ./lh.entorhinal_exvivo.label #-------------------------------------------- #@# Ex-vivo Entorhinal Cortex Label rh Tue Dec 22 16:28:04 EET 2015 \n mris_spherical_average -erode 1 -orig white -t 0.4 -o T40_OM_Post label rh.entorhinal rh sphere.reg rh.EC_average rh.entorhinal_exvivo.label \n painting output onto subject T40_OM_Post. processing subject rh.EC_average... reading output surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg... eroding label 1 times before writing thresholding label stat at 0.400 before writing only 1 subject - copying statistics... writing label with 787 points to rh.entorhinal_exvivo.label... \n mris_anatomical_stats -mgz -f ../stats/rh.entorhinal_exvivo.stats -b -l ./rh.entorhinal_exvivo.label T40_OM_Post rh white \n limiting computations to label ./rh.entorhinal_exvivo.label. reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white... reading input pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.pial... reading input white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white... INFO: assuming MGZ format for volumes. table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 273 165 774 3.072 0.503 0.165 0.314 10 4.6 ./rh.entorhinal_exvivo.label #------------------------------------------ Started at Tue Dec 22 14:03:20 EET 2015 Ended at Tue Dec 22 16:28:17 EET 2015 #@#%# recon-all-run-time-hours 2.416 recon-all -s T40_OM_Post finished without error at Tue Dec 22 16:28:17 EET 2015 \n\n New invocation of recon-all \n\n Tue Dec 22 16:28:18 EET 2015 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post /Applications/freesurfer/bin/recon-all -s T40_OM_Post -localGI subjid T40_OM_Post setenv SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Actual FREESURFER_HOME /Applications/freesurfer build-stamp.txt: freesurfer-Darwin-lion-stable-pub-v5.3.0 Darwin MacBook-Pro-di-Marco.local 13.3.0 Darwin Kernel Version 13.3.0: Tue Jun 3 21:27:35 PDT 2014; root:xnu-2422.110.17~1/RELEASE_X86_64 x86_64 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 709 PhysMem: 4439M used (1375M wired), 2355M unused. ######################################## program versions used $Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 nicks Exp $ $Id: mri_motion_correct.fsl,v 1.14 2011/03/02 20:16:39 nicks Exp $ mri_convert -all-info ProgramName: mri_convert ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 FLIRT version 5.5 $Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks Exp $ mri_convert --version stable5 ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 Program nu_correct, built from: Package MNI N3, version 1.10, compiled by nicks@aspasia.local (i686-apple-darwin10.2.0) on 2010-02-26 at 14:19:30 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_normalize.c,v 1.73.2.1 2012/10/17 19:11:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_watershed.cpp,v 1.96.2.1 2011/11/08 22:18:44 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_segment.c,v 1.40 2011/03/02 00:04:24 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_label2label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_label2label.c,v 1.40.2.2 2013/04/02 16:26:15 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_em_register.c,v 1.84.2.3 2013/02/09 00:49:26 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_normalize.c,v 1.52.2.2 2012/10/17 19:11:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_register.c,v 1.78.2.3 2013/02/09 00:42:20 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_label.c,v 1.96.2.1 2012/08/28 22:11:20 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_pretess.c,v 1.20 2011/03/02 00:04:23 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_fill.c,v 1.118 2011/03/16 21:23:49 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_concatenate_lta ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_concatenate_lta.c,v 1.10 2011/03/16 21:23:48 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_smooth.c,v 1.28 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_inflate.c,v 1.43 2011/03/02 00:04:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_euler_number.c,v 1.8.2.2 2013/01/14 22:40:07 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_volmask.cpp,v 1.25 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_anatomical_stats.c,v 1.72 2011/03/02 00:04:26 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mrisp_paint.c,v 1.11 2011/03/02 00:04:35 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_curvature_stats.c,v 1.64 2011/03/02 00:04:30 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_calc.c,v 1.37.2.8 2013/01/28 17:05:17 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ ProgramName: mri_robust_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_or.c,v 1.3 2011/03/02 00:04:13 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2015/12/22-14:28:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ####################################### GCADIR /Applications/freesurfer/average GCA RB_all_2008-03-26.gca GCASkull RB_all_withskull_2008-03-26.gca AvgCurvTif average.curvature.filled.buckner40.tif GCSDIR /Applications/freesurfer/average GCS curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ####################################### INFO: current FREESURFER_HOME does not match that of previous processing. Current: /Applications/freesurfer Previous: /cdrom/Marco/freesurfer /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf #-------------------------------------------- #@# Local Gyrification Index lh Tue Dec 22 16:28:20 EET 2015 \n mris_compute_lgi --i lh.pial \n ================= rm -Rf /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial ================= ================= mkdir -p /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial ================= ================= mris_fill -c -r 1 lh.pial /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz ================= reading surface from lh.pial... writing filled volume to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz... conforming output volume setting resolution for intermediate calculations to 1.0000 ================= make_outer_surface('/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz',15,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer'); exit ================= 2015-12-22 16:28:33.066 MATLAB_maci64[48150:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> reading filled volume... closing volume... morphological closing done. writing outer surface... ================= mris_extract_main_component /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-main ================= counting number of connected components... 63014 voxel in cpt #1: X=2 [v=63014,e=189036,f=126024] located at (-23.023743, -12.114071, 24.424305) For the whole surface: X=2 [v=63014,e=189036,f=126024] One single component has been found nothing to do done ================= mris_smooth -nw -n 30 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-main ./lh.pial-outer-smoothed ================= smoothing for 30 iterations smoothing surface tessellation for 30 iterations... smoothing complete - recomputing first and second fundamental forms... ================= mris_euler_number ./lh.pial-outer-smoothed ================= euler # = v-e+f = 2g-2: 63014 - 189036 + 126024 = 2 --> 0 holes F =2V-4: 126024 = 126028-4 (0) 2E=3F: 378072 = 378072 (0) total defect index = 0 ================= mris_convert -n lh.pial-outer-smoothed /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc ================= ================= find_corresponding_center_FSformat('lh.pial','lh.pial-outer-smoothed',100,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial','/tmp/mrc_48135_.m'); exit ================= 2015-12-22 16:29:05.107 MATLAB_maci64[48212:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.02 sec) FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) deltaT = 4.3800 ================= make_roi_paths('lh.pial','lh.pial-outer-smoothed',25,100,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial','/tmp/mrp_48135_.m'); exit ================= 2015-12-22 16:29:10.173 MATLAB_maci64[48264:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> loading datas ... FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.02 sec) FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) preparing outer mesh structure ... face 5000 / 126024 face 10000 / 126024 face 15000 / 126024 face 20000 / 126024 face 25000 / 126024 face 30000 / 126024 face 35000 / 126024 face 40000 / 126024 face 45000 / 126024 face 50000 / 126024 face 55000 / 126024 face 60000 / 126024 face 65000 / 126024 face 70000 / 126024 face 75000 / 126024 face 80000 / 126024 face 85000 / 126024 face 90000 / 126024 face 95000 / 126024 face 100000 / 126024 face 105000 / 126024 face 110000 / 126024 face 115000 / 126024 face 120000 / 126024 face 125000 / 126024 mesh_outer = vertices: [63014x3 double] faces: [126024x3 double] facesOfVertex: [63014x1 struct] preparing pial mesh structure ... ...searching for mesh edges...done (196.06 sec). ... creating path file for vertex 1 / 63014 area file for outer ROIs saved at 1 ... creating path file for vertex 101 / 63014 ... creating path file for vertex 201 / 63014 ... creating path file for vertex 301 / 63014 ... creating path file for vertex 401 / 63014 ... creating path file for vertex 501 / 63014 ... creating path file for vertex 601 / 63014 ... creating path file for vertex 701 / 63014 ... creating path file for vertex 801 / 63014 ... creating path file for vertex 901 / 63014 ... creating path file for vertex 1001 / 63014 ... creating path file for vertex 1101 / 63014 ... creating path file for vertex 1201 / 63014 ... creating path file for vertex 1301 / 63014 ... creating path file for vertex 1401 / 63014 ... creating path file for vertex 1501 / 63014 ... creating path file for vertex 1601 / 63014 ... creating path file for vertex 1701 / 63014 ... creating path file for vertex 1801 / 63014 ... creating path file for vertex 1901 / 63014 ... creating path file for vertex 2001 / 63014 ... creating path file for vertex 2101 / 63014 ... creating path file for vertex 2201 / 63014 ... creating path file for vertex 2301 / 63014 ... creating path file for vertex 2401 / 63014 ... creating path file for vertex 2501 / 63014 ... creating path file for vertex 2601 / 63014 ... creating path file for vertex 2701 / 63014 ... creating path file for vertex 2801 / 63014 ... creating path file for vertex 2901 / 63014 ... creating path file for vertex 3001 / 63014 ... creating path file for vertex 3101 / 63014 ... creating path file for vertex 3201 / 63014 ... creating path file for vertex 3301 / 63014 ... creating path file for vertex 3401 / 63014 ... creating path file for vertex 3501 / 63014 ... creating path file for vertex 3601 / 63014 ... creating path file for vertex 3701 / 63014 ... creating path file for vertex 3801 / 63014 ... creating path file for vertex 3901 / 63014 ... creating path file for vertex 4001 / 63014 ... creating path file for vertex 4101 / 63014 ... creating path file for vertex 4201 / 63014 ... creating path file for vertex 4301 / 63014 ... creating path file for vertex 4401 / 63014 ... creating path file for vertex 4501 / 63014 ... creating path file for vertex 4601 / 63014 ... creating path file for vertex 4701 / 63014 ... creating path file for vertex 4801 / 63014 ... creating path file for vertex 4901 / 63014 ... creating path file for vertex 5001 / 63014 area file for outer ROIs saved at 5001 ... creating path file for vertex 5101 / 63014 ... creating path file for vertex 5201 / 63014 ... creating path file for vertex 5301 / 63014 ... creating path file for vertex 5401 / 63014 ... creating path file for vertex 5501 / 63014 ... creating path file for vertex 5601 / 63014 ... creating path file for vertex 5701 / 63014 ... creating path file for vertex 5801 / 63014 ... creating path file for vertex 5901 / 63014 ... creating path file for vertex 6001 / 63014 ... creating path file for vertex 6101 / 63014 ... creating path file for vertex 6201 / 63014 ... creating path file for vertex 6301 / 63014 ... creating path file for vertex 6401 / 63014 ... creating path file for vertex 6501 / 63014 ... creating path file for vertex 6601 / 63014 ... creating path file for vertex 6701 / 63014 ... creating path file for vertex 6801 / 63014 ... creating path file for vertex 6901 / 63014 ... creating path file for vertex 7001 / 63014 ... creating path file for vertex 7101 / 63014 ... creating path file for vertex 7201 / 63014 ... creating path file for vertex 7301 / 63014 ... creating path file for vertex 7401 / 63014 ... creating path file for vertex 7501 / 63014 ... creating path file for vertex 7601 / 63014 ... creating path file for vertex 7701 / 63014 ... creating path file for vertex 7801 / 63014 ... creating path file for vertex 7901 / 63014 ... creating path file for vertex 8001 / 63014 ... creating path file for vertex 8101 / 63014 ... creating path file for vertex 8201 / 63014 ... creating path file for vertex 8301 / 63014 ... creating path file for vertex 8401 / 63014 ... creating path file for vertex 8501 / 63014 ... creating path file for vertex 8601 / 63014 ... creating path file for vertex 8701 / 63014 ... creating path file for vertex 8801 / 63014 ... creating path file for vertex 8901 / 63014 ... creating path file for vertex 9001 / 63014 ... creating path file for vertex 9101 / 63014 ... creating path file for vertex 9201 / 63014 ... creating path file for vertex 9301 / 63014 ... creating path file for vertex 9401 / 63014 ... creating path file for vertex 9501 / 63014 ... creating path file for vertex 9601 / 63014 ... creating path file for vertex 9701 / 63014 ... creating path file for vertex 9801 / 63014 ... creating path file for vertex 9901 / 63014 ... creating path file for vertex 10001 / 63014 area file for outer ROIs saved at 10001 ... creating path file for vertex 10101 / 63014 ... creating path file for vertex 10201 / 63014 ... creating path file for vertex 10301 / 63014 ... creating path file for vertex 10401 / 63014 ... creating path file for vertex 10501 / 63014 ... creating path file for vertex 10601 / 63014 ... creating path file for vertex 10701 / 63014 ... creating path file for vertex 10801 / 63014 ... creating path file for vertex 10901 / 63014 ... creating path file for vertex 11001 / 63014 ... creating path file for vertex 11101 / 63014 ... creating path file for vertex 11201 / 63014 ... creating path file for vertex 11301 / 63014 ... creating path file for vertex 11401 / 63014 ... creating path file for vertex 11501 / 63014 ... creating path file for vertex 11601 / 63014 ... creating path file for vertex 11701 / 63014 ... creating path file for vertex 11801 / 63014 ... creating path file for vertex 11901 / 63014 ... creating path file for vertex 12001 / 63014 ... creating path file for vertex 12101 / 63014 ... creating path file for vertex 12201 / 63014 ... creating path file for vertex 12301 / 63014 ... creating path file for vertex 12401 / 63014 ... creating path file for vertex 12501 / 63014 ... creating path file for vertex 12601 / 63014 ... creating path file for vertex 12701 / 63014 ... creating path file for vertex 12801 / 63014 ... creating path file for vertex 12901 / 63014 ... creating path file for vertex 13001 / 63014 ... creating path file for vertex 13101 / 63014 ... creating path file for vertex 13201 / 63014 ... creating path file for vertex 13301 / 63014 ... creating path file for vertex 13401 / 63014 ... creating path file for vertex 13501 / 63014 ... creating path file for vertex 13601 / 63014 ... creating path file for vertex 13701 / 63014 ... creating path file for vertex 13801 / 63014 ... creating path file for vertex 13901 / 63014 ... creating path file for vertex 14001 / 63014 ... creating path file for vertex 14101 / 63014 ... creating path file for vertex 14201 / 63014 ... creating path file for vertex 14301 / 63014 ... creating path file for vertex 14401 / 63014 ... creating path file for vertex 14501 / 63014 ... creating path file for vertex 14601 / 63014 ... creating path file for vertex 14701 / 63014 ... creating path file for vertex 14801 / 63014 ... creating path file for vertex 14901 / 63014 ... creating path file for vertex 15001 / 63014 area file for outer ROIs saved at 15001 ... creating path file for vertex 15101 / 63014 ... creating path file for vertex 15201 / 63014 ... creating path file for vertex 15301 / 63014 ... creating path file for vertex 15401 / 63014 ... creating path file for vertex 15501 / 63014 ... creating path file for vertex 15601 / 63014 ... creating path file for vertex 15701 / 63014 ... creating path file for vertex 15801 / 63014 ... creating path file for vertex 15901 / 63014 ... creating path file for vertex 16001 / 63014 ... creating path file for vertex 16101 / 63014 ... creating path file for vertex 16201 / 63014 ... creating path file for vertex 16301 / 63014 ... creating path file for vertex 16401 / 63014 ... creating path file for vertex 16501 / 63014 ... creating path file for vertex 16601 / 63014 ... creating path file for vertex 16701 / 63014 ... creating path file for vertex 16801 / 63014 ... creating path file for vertex 16901 / 63014 ... creating path file for vertex 17001 / 63014 ... creating path file for vertex 17101 / 63014 ... creating path file for vertex 17201 / 63014 ... creating path file for vertex 17301 / 63014 ... creating path file for vertex 17401 / 63014 ... creating path file for vertex 17501 / 63014 ... creating path file for vertex 17601 / 63014 ... creating path file for vertex 17701 / 63014 ... creating path file for vertex 17801 / 63014 ... creating path file for vertex 17901 / 63014 ... creating path file for vertex 18001 / 63014 ... creating path file for vertex 18101 / 63014 ... creating path file for vertex 18201 / 63014 ... creating path file for vertex 18301 / 63014 ... creating path file for vertex 18401 / 63014 ... creating path file for vertex 18501 / 63014 ... creating path file for vertex 18601 / 63014 ... creating path file for vertex 18701 / 63014 ... creating path file for vertex 18801 / 63014 ... creating path file for vertex 18901 / 63014 ... creating path file for vertex 19001 / 63014 ... creating path file for vertex 19101 / 63014 ... creating path file for vertex 19201 / 63014 ... creating path file for vertex 19301 / 63014 ... creating path file for vertex 19401 / 63014 ... creating path file for vertex 19501 / 63014 ... creating path file for vertex 19601 / 63014 ... creating path file for vertex 19701 / 63014 ... creating path file for vertex 19801 / 63014 ... creating path file for vertex 19901 / 63014 ... creating path file for vertex 20001 / 63014 area file for outer ROIs saved at 20001 ... creating path file for vertex 20101 / 63014 ... creating path file for vertex 20201 / 63014 ... creating path file for vertex 20301 / 63014 ... creating path file for vertex 20401 / 63014 ... creating path file for vertex 20501 / 63014 ... creating path file for vertex 20601 / 63014 ... creating path file for vertex 20701 / 63014 ... creating path file for vertex 20801 / 63014 ... creating path file for vertex 20901 / 63014 ... creating path file for vertex 21001 / 63014 ... creating path file for vertex 21101 / 63014 ... creating path file for vertex 21201 / 63014 ... creating path file for vertex 21301 / 63014 ... creating path file for vertex 21401 / 63014 ... creating path file for vertex 21501 / 63014 ... creating path file for vertex 21601 / 63014 ... creating path file for vertex 21701 / 63014 ... creating path file for vertex 21801 / 63014 ... creating path file for vertex 21901 / 63014 ... creating path file for vertex 22001 / 63014 ... creating path file for vertex 22101 / 63014 ... creating path file for vertex 22201 / 63014 ... creating path file for vertex 22301 / 63014 ... creating path file for vertex 22401 / 63014 ... creating path file for vertex 22501 / 63014 ... creating path file for vertex 22601 / 63014 ... creating path file for vertex 22701 / 63014 ... creating path file for vertex 22801 / 63014 ... creating path file for vertex 22901 / 63014 ... creating path file for vertex 23001 / 63014 ... creating path file for vertex 23101 / 63014 ... creating path file for vertex 23201 / 63014 ... creating path file for vertex 23301 / 63014 ... creating path file for vertex 23401 / 63014 ... creating path file for vertex 23501 / 63014 ... creating path file for vertex 23601 / 63014 ... creating path file for vertex 23701 / 63014 ... creating path file for vertex 23801 / 63014 ... creating path file for vertex 23901 / 63014 ... creating path file for vertex 24001 / 63014 ... creating path file for vertex 24101 / 63014 ... creating path file for vertex 24201 / 63014 ... creating path file for vertex 24301 / 63014 ... creating path file for vertex 24401 / 63014 ... creating path file for vertex 24501 / 63014 ... creating path file for vertex 24601 / 63014 ... creating path file for vertex 24701 / 63014 ... creating path file for vertex 24801 / 63014 ... creating path file for vertex 24901 / 63014 ... creating path file for vertex 25001 / 63014 area file for outer ROIs saved at 25001 ... creating path file for vertex 25101 / 63014 ... creating path file for vertex 25201 / 63014 ... creating path file for vertex 25301 / 63014 ... creating path file for vertex 25401 / 63014 ... creating path file for vertex 25501 / 63014 ... creating path file for vertex 25601 / 63014 ... creating path file for vertex 25701 / 63014 ... creating path file for vertex 25801 / 63014 ... creating path file for vertex 25901 / 63014 ... creating path file for vertex 26001 / 63014 ... creating path file for vertex 26101 / 63014 ... creating path file for vertex 26201 / 63014 ... creating path file for vertex 26301 / 63014 ... creating path file for vertex 26401 / 63014 ... creating path file for vertex 26501 / 63014 ... creating path file for vertex 26601 / 63014 ... creating path file for vertex 26701 / 63014 ... creating path file for vertex 26801 / 63014 ... creating path file for vertex 26901 / 63014 ... creating path file for vertex 27001 / 63014 ... creating path file for vertex 27101 / 63014 ... creating path file for vertex 27201 / 63014 ... creating path file for vertex 27301 / 63014 ... creating path file for vertex 27401 / 63014 ... creating path file for vertex 27501 / 63014 ... creating path file for vertex 27601 / 63014 ... creating path file for vertex 27701 / 63014 ... creating path file for vertex 27801 / 63014 ... creating path file for vertex 27901 / 63014 ... creating path file for vertex 28001 / 63014 ... creating path file for vertex 28101 / 63014 ... creating path file for vertex 28201 / 63014 ... creating path file for vertex 28301 / 63014 ... creating path file for vertex 28401 / 63014 ... creating path file for vertex 28501 / 63014 ... creating path file for vertex 28601 / 63014 ... creating path file for vertex 28701 / 63014 ... creating path file for vertex 28801 / 63014 ... creating path file for vertex 28901 / 63014 ... creating path file for vertex 29001 / 63014 ... creating path file for vertex 29101 / 63014 ... creating path file for vertex 29201 / 63014 ... creating path file for vertex 29301 / 63014 ... creating path file for vertex 29401 / 63014 ... creating path file for vertex 29501 / 63014 ... creating path file for vertex 29601 / 63014 ... creating path file for vertex 29701 / 63014 ... creating path file for vertex 29801 / 63014 ... creating path file for vertex 29901 / 63014 ... creating path file for vertex 30001 / 63014 area file for outer ROIs saved at 30001 ... creating path file for vertex 30101 / 63014 ... creating path file for vertex 30201 / 63014 ... creating path file for vertex 30301 / 63014 ... creating path file for vertex 30401 / 63014 ... creating path file for vertex 30501 / 63014 ... creating path file for vertex 30601 / 63014 ... creating path file for vertex 30701 / 63014 ... creating path file for vertex 30801 / 63014 ... creating path file for vertex 30901 / 63014 ... creating path file for vertex 31001 / 63014 ... creating path file for vertex 31101 / 63014 ... creating path file for vertex 31201 / 63014 ... creating path file for vertex 31301 / 63014 ... creating path file for vertex 31401 / 63014 ... creating path file for vertex 31501 / 63014 ... creating path file for vertex 31601 / 63014 ... creating path file for vertex 31701 / 63014 ... creating path file for vertex 31801 / 63014 ... creating path file for vertex 31901 / 63014 ... creating path file for vertex 32001 / 63014 ... creating path file for vertex 32101 / 63014 ... creating path file for vertex 32201 / 63014 ... creating path file for vertex 32301 / 63014 ... creating path file for vertex 32401 / 63014 ... creating path file for vertex 32501 / 63014 ... creating path file for vertex 32601 / 63014 ... creating path file for vertex 32701 / 63014 ... creating path file for vertex 32801 / 63014 ... creating path file for vertex 32901 / 63014 ... creating path file for vertex 33001 / 63014 ... creating path file for vertex 33101 / 63014 ... creating path file for vertex 33201 / 63014 ... creating path file for vertex 33301 / 63014 ... creating path file for vertex 33401 / 63014 ... creating path file for vertex 33501 / 63014 ... creating path file for vertex 33601 / 63014 ... creating path file for vertex 33701 / 63014 ... creating path file for vertex 33801 / 63014 ... creating path file for vertex 33901 / 63014 ... creating path file for vertex 34001 / 63014 ... creating path file for vertex 34101 / 63014 ... creating path file for vertex 34201 / 63014 ... creating path file for vertex 34301 / 63014 ... creating path file for vertex 34401 / 63014 ... creating path file for vertex 34501 / 63014 ... creating path file for vertex 34601 / 63014 ... creating path file for vertex 34701 / 63014 ... creating path file for vertex 34801 / 63014 ... creating path file for vertex 34901 / 63014 ... creating path file for vertex 35001 / 63014 area file for outer ROIs saved at 35001 ... creating path file for vertex 35101 / 63014 ... creating path file for vertex 35201 / 63014 ... creating path file for vertex 35301 / 63014 ... creating path file for vertex 35401 / 63014 ... creating path file for vertex 35501 / 63014 ... creating path file for vertex 35601 / 63014 ... creating path file for vertex 35701 / 63014 ... creating path file for vertex 35801 / 63014 ... creating path file for vertex 35901 / 63014 ... creating path file for vertex 36001 / 63014 ... creating path file for vertex 36101 / 63014 ... creating path file for vertex 36201 / 63014 ... creating path file for vertex 36301 / 63014 ... creating path file for vertex 36401 / 63014 ... creating path file for vertex 36501 / 63014 ... creating path file for vertex 36601 / 63014 ... creating path file for vertex 36701 / 63014 ... creating path file for vertex 36801 / 63014 ... creating path file for vertex 36901 / 63014 ... creating path file for vertex 37001 / 63014 ... creating path file for vertex 37101 / 63014 ... creating path file for vertex 37201 / 63014 ... creating path file for vertex 37301 / 63014 ... creating path file for vertex 37401 / 63014 ... creating path file for vertex 37501 / 63014 ... creating path file for vertex 37601 / 63014 ... creating path file for vertex 37701 / 63014 ... creating path file for vertex 37801 / 63014 ... creating path file for vertex 37901 / 63014 ... creating path file for vertex 38001 / 63014 ... creating path file for vertex 38101 / 63014 ... creating path file for vertex 38201 / 63014 ... creating path file for vertex 38301 / 63014 ... creating path file for vertex 38401 / 63014 ... creating path file for vertex 38501 / 63014 ... creating path file for vertex 38601 / 63014 ... creating path file for vertex 38701 / 63014 ... creating path file for vertex 38801 / 63014 ... creating path file for vertex 38901 / 63014 ... creating path file for vertex 39001 / 63014 ... creating path file for vertex 39101 / 63014 ... creating path file for vertex 39201 / 63014 ... creating path file for vertex 39301 / 63014 ... creating path file for vertex 39401 / 63014 ... creating path file for vertex 39501 / 63014 ... creating path file for vertex 39601 / 63014 ... creating path file for vertex 39701 / 63014 ... creating path file for vertex 39801 / 63014 ... creating path file for vertex 39901 / 63014 ... creating path file for vertex 40001 / 63014 area file for outer ROIs saved at 40001 ... creating path file for vertex 40101 / 63014 ... creating path file for vertex 40201 / 63014 ... creating path file for vertex 40301 / 63014 ... creating path file for vertex 40401 / 63014 ... creating path file for vertex 40501 / 63014 ... creating path file for vertex 40601 / 63014 ... creating path file for vertex 40701 / 63014 ... creating path file for vertex 40801 / 63014 ... creating path file for vertex 40901 / 63014 ... creating path file for vertex 41001 / 63014 ... creating path file for vertex 41101 / 63014 ... creating path file for vertex 41201 / 63014 ... creating path file for vertex 41301 / 63014 ... creating path file for vertex 41401 / 63014 ... creating path file for vertex 41501 / 63014 ... creating path file for vertex 41601 / 63014 ... creating path file for vertex 41701 / 63014 ... creating path file for vertex 41801 / 63014 ... creating path file for vertex 41901 / 63014 ... creating path file for vertex 42001 / 63014 ... creating path file for vertex 42101 / 63014 ... creating path file for vertex 42201 / 63014 ... creating path file for vertex 42301 / 63014 ... creating path file for vertex 42401 / 63014 ... creating path file for vertex 42501 / 63014 ... creating path file for vertex 42601 / 63014 ... creating path file for vertex 42701 / 63014 ... creating path file for vertex 42801 / 63014 ... creating path file for vertex 42901 / 63014 ... creating path file for vertex 43001 / 63014 ... creating path file for vertex 43101 / 63014 ... creating path file for vertex 43201 / 63014 ... creating path file for vertex 43301 / 63014 ... creating path file for vertex 43401 / 63014 ... creating path file for vertex 43501 / 63014 ... creating path file for vertex 43601 / 63014 ... creating path file for vertex 43701 / 63014 ... creating path file for vertex 43801 / 63014 ... creating path file for vertex 43901 / 63014 ... creating path file for vertex 44001 / 63014 ... creating path file for vertex 44101 / 63014 ... creating path file for vertex 44201 / 63014 ... creating path file for vertex 44301 / 63014 ... creating path file for vertex 44401 / 63014 ... creating path file for vertex 44501 / 63014 ... creating path file for vertex 44601 / 63014 ... creating path file for vertex 44701 / 63014 ... creating path file for vertex 44801 / 63014 ... creating path file for vertex 44901 / 63014 ... creating path file for vertex 45001 / 63014 area file for outer ROIs saved at 45001 ... creating path file for vertex 45101 / 63014 ... creating path file for vertex 45201 / 63014 ... creating path file for vertex 45301 / 63014 ... creating path file for vertex 45401 / 63014 ... creating path file for vertex 45501 / 63014 ... creating path file for vertex 45601 / 63014 ... creating path file for vertex 45701 / 63014 ... creating path file for vertex 45801 / 63014 ... creating path file for vertex 45901 / 63014 ... creating path file for vertex 46001 / 63014 ... creating path file for vertex 46101 / 63014 ... creating path file for vertex 46201 / 63014 ... creating path file for vertex 46301 / 63014 ... creating path file for vertex 46401 / 63014 ... creating path file for vertex 46501 / 63014 ... creating path file for vertex 46601 / 63014 ... creating path file for vertex 46701 / 63014 ... creating path file for vertex 46801 / 63014 ... creating path file for vertex 46901 / 63014 ... creating path file for vertex 47001 / 63014 ... creating path file for vertex 47101 / 63014 ... creating path file for vertex 47201 / 63014 ... creating path file for vertex 47301 / 63014 ... creating path file for vertex 47401 / 63014 ... creating path file for vertex 47501 / 63014 ... creating path file for vertex 47601 / 63014 ... creating path file for vertex 47701 / 63014 ... creating path file for vertex 47801 / 63014 ... creating path file for vertex 47901 / 63014 ... creating path file for vertex 48001 / 63014 ... creating path file for vertex 48101 / 63014 ... creating path file for vertex 48201 / 63014 ... creating path file for vertex 48301 / 63014 ... creating path file for vertex 48401 / 63014 ... creating path file for vertex 48501 / 63014 ... creating path file for vertex 48601 / 63014 ... creating path file for vertex 48701 / 63014 ... creating path file for vertex 48801 / 63014 ... creating path file for vertex 48901 / 63014 ... creating path file for vertex 49001 / 63014 ... creating path file for vertex 49101 / 63014 ... creating path file for vertex 49201 / 63014 ... creating path file for vertex 49301 / 63014 ... creating path file for vertex 49401 / 63014 ... creating path file for vertex 49501 / 63014 ... creating path file for vertex 49601 / 63014 ... creating path file for vertex 49701 / 63014 ... creating path file for vertex 49801 / 63014 ... creating path file for vertex 49901 / 63014 ... creating path file for vertex 50001 / 63014 area file for outer ROIs saved at 50001 ... creating path file for vertex 50101 / 63014 ... creating path file for vertex 50201 / 63014 ... creating path file for vertex 50301 / 63014 ... creating path file for vertex 50401 / 63014 ... creating path file for vertex 50501 / 63014 ... creating path file for vertex 50601 / 63014 ... creating path file for vertex 50701 / 63014 ... creating path file for vertex 50801 / 63014 ... creating path file for vertex 50901 / 63014 ... creating path file for vertex 51001 / 63014 ... creating path file for vertex 51101 / 63014 ... creating path file for vertex 51201 / 63014 ... creating path file for vertex 51301 / 63014 ... creating path file for vertex 51401 / 63014 ... creating path file for vertex 51501 / 63014 ... creating path file for vertex 51601 / 63014 ... creating path file for vertex 51701 / 63014 ... creating path file for vertex 51801 / 63014 ... creating path file for vertex 51901 / 63014 ... creating path file for vertex 52001 / 63014 ... creating path file for vertex 52101 / 63014 ... creating path file for vertex 52201 / 63014 ... creating path file for vertex 52301 / 63014 ... creating path file for vertex 52401 / 63014 ... creating path file for vertex 52501 / 63014 ... creating path file for vertex 52601 / 63014 ... creating path file for vertex 52701 / 63014 ... creating path file for vertex 52801 / 63014 ... creating path file for vertex 52901 / 63014 ... creating path file for vertex 53001 / 63014 ... creating path file for vertex 53101 / 63014 ... creating path file for vertex 53201 / 63014 ... creating path file for vertex 53301 / 63014 ... creating path file for vertex 53401 / 63014 ... creating path file for vertex 53501 / 63014 ... creating path file for vertex 53601 / 63014 ... creating path file for vertex 53701 / 63014 ... creating path file for vertex 53801 / 63014 ... creating path file for vertex 53901 / 63014 ... creating path file for vertex 54001 / 63014 ... creating path file for vertex 54101 / 63014 ... creating path file for vertex 54201 / 63014 ... creating path file for vertex 54301 / 63014 ... creating path file for vertex 54401 / 63014 ... creating path file for vertex 54501 / 63014 ... creating path file for vertex 54601 / 63014 ... creating path file for vertex 54701 / 63014 ... creating path file for vertex 54801 / 63014 ... creating path file for vertex 54901 / 63014 ... creating path file for vertex 55001 / 63014 area file for outer ROIs saved at 55001 ... creating path file for vertex 55101 / 63014 ... creating path file for vertex 55201 / 63014 ... creating path file for vertex 55301 / 63014 ... creating path file for vertex 55401 / 63014 ... creating path file for vertex 55501 / 63014 ... creating path file for vertex 55601 / 63014 ... creating path file for vertex 55701 / 63014 ... creating path file for vertex 55801 / 63014 ... creating path file for vertex 55901 / 63014 ... creating path file for vertex 56001 / 63014 ... creating path file for vertex 56101 / 63014 ... creating path file for vertex 56201 / 63014 ... creating path file for vertex 56301 / 63014 ... creating path file for vertex 56401 / 63014 ... creating path file for vertex 56501 / 63014 ... creating path file for vertex 56601 / 63014 ... creating path file for vertex 56701 / 63014 ... creating path file for vertex 56801 / 63014 ... creating path file for vertex 56901 / 63014 ... creating path file for vertex 57001 / 63014 ... creating path file for vertex 57101 / 63014 ... creating path file for vertex 57201 / 63014 ... creating path file for vertex 57301 / 63014 ... creating path file for vertex 57401 / 63014 ... creating path file for vertex 57501 / 63014 ... creating path file for vertex 57601 / 63014 ... creating path file for vertex 57701 / 63014 ... creating path file for vertex 57801 / 63014 ... creating path file for vertex 57901 / 63014 ... creating path file for vertex 58001 / 63014 ... creating path file for vertex 58101 / 63014 ... creating path file for vertex 58201 / 63014 ... creating path file for vertex 58301 / 63014 ... creating path file for vertex 58401 / 63014 ... creating path file for vertex 58501 / 63014 ... creating path file for vertex 58601 / 63014 ... creating path file for vertex 58701 / 63014 ... creating path file for vertex 58801 / 63014 ... creating path file for vertex 58901 / 63014 ... creating path file for vertex 59001 / 63014 ... creating path file for vertex 59101 / 63014 ... creating path file for vertex 59201 / 63014 ... creating path file for vertex 59301 / 63014 ... creating path file for vertex 59401 / 63014 ... creating path file for vertex 59501 / 63014 ... creating path file for vertex 59601 / 63014 ... creating path file for vertex 59701 / 63014 ... creating path file for vertex 59801 / 63014 ... creating path file for vertex 59901 / 63014 ... creating path file for vertex 60001 / 63014 area file for outer ROIs saved at 60001 ... creating path file for vertex 60101 / 63014 ... creating path file for vertex 60201 / 63014 ... creating path file for vertex 60301 / 63014 ... creating path file for vertex 60401 / 63014 ... creating path file for vertex 60501 / 63014 ... creating path file for vertex 60601 / 63014 ... creating path file for vertex 60701 / 63014 ... creating path file for vertex 60801 / 63014 ... creating path file for vertex 60901 / 63014 ... creating path file for vertex 61001 / 63014 ... creating path file for vertex 61101 / 63014 ... creating path file for vertex 61201 / 63014 ... creating path file for vertex 61301 / 63014 ... creating path file for vertex 61401 / 63014 ... creating path file for vertex 61501 / 63014 ... creating path file for vertex 61601 / 63014 ... creating path file for vertex 61701 / 63014 ... creating path file for vertex 61801 / 63014 ... creating path file for vertex 61901 / 63014 ... creating path file for vertex 62001 / 63014 ... creating path file for vertex 62101 / 63014 ... creating path file for vertex 62201 / 63014 ... creating path file for vertex 62301 / 63014 ... creating path file for vertex 62401 / 63014 ... creating path file for vertex 62501 / 63014 ... creating path file for vertex 62601 / 63014 ... creating path file for vertex 62701 / 63014 ... creating path file for vertex 62801 / 63014 ... creating path file for vertex 62901 / 63014 ... creating path file for vertex 63001 / 63014 saving area file in matlab format... DONE. deltaT = 906.1000 ================= mri_path2label --confillxfn lh.pial /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/mri_path2label.input ================= Reading lh.pial Connecting and filling vertices in path at fillseed 824 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 824 nlabel 10321 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000001.label Connecting and filling vertices in path at fillseed 837 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 837 nlabel 10579 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000101.label Connecting and filling vertices in path at fillseed 2300 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 2300 nlabel 13900 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000201.label Connecting and filling vertices in path at fillseed 1783 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 1783 nlabel 14864 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000301.label Connecting and filling vertices in path at fillseed 2229 Finding path............................................................................................................................................................................................................................................................................................................................................ done Filling 2229 nlabel 9020 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000401.label Connecting and filling vertices in path at fillseed 3506 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 3506 nlabel 14213 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000501.label Connecting and filling vertices in path at fillseed 1754 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 1754 nlabel 9753 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000601.label Connecting and filling vertices in path at fillseed 2823 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 2823 nlabel 9499 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000701.label Connecting and filling vertices in path at fillseed 3507 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 3507 nlabel 14255 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000801.label Connecting and filling vertices in path at fillseed 3905 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 3905 nlabel 9128 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000901.label Connecting and filling vertices in path at fillseed 4081 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 4081 nlabel 8833 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001001.label Connecting and filling vertices in path at fillseed 2880 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 2880 nlabel 13846 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001101.label Connecting and filling vertices in path at fillseed 3507 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 3507 nlabel 14296 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001201.label Connecting and filling vertices in path at fillseed 4631 Finding path........................................................................................................................................................................................................................................................................................................ done Filling 4631 nlabel 8736 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001301.label Connecting and filling vertices in path at fillseed 4747 Finding path............................................................................................................................................................................................................................................................................................................................................................... done Filling 4747 nlabel 8758 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001401.label Connecting and filling vertices in path at fillseed 4941 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 4941 nlabel 14857 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001501.label Connecting and filling vertices in path at fillseed 6159 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 6159 nlabel 6709 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001601.label Connecting and filling vertices in path at fillseed 5434 Finding path................................................................................................................................................................................................................................................................................................ done Filling 5434 nlabel 9357 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001701.label Connecting and filling vertices in path at fillseed 6225 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 6225 nlabel 6375 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001801.label Connecting and filling vertices in path at fillseed 7863 Finding path............................................................................................................................................................................................................................................................................................................ done Filling 7863 nlabel 5397 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001901.label Connecting and filling vertices in path at fillseed 7047 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 7047 nlabel 8200 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002001.label Connecting and filling vertices in path at fillseed 6492 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 6492 nlabel 16008 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002101.label Connecting and filling vertices in path at fillseed 5814 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 5814 nlabel 14930 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002201.label Connecting and filling vertices in path at fillseed 7907 Finding path.................................................................................................................................................................................................................................................................................................................................................. done Filling 7907 nlabel 8559 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002301.label Connecting and filling vertices in path at fillseed 6328 Finding path............................................................................................................................................................................................................................................................................................................... done Filling 6328 nlabel 8814 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002401.label Connecting and filling vertices in path at fillseed 5527 Finding path..................................................................................................................................................................................................................................................................................................................................................................... done Filling 5527 nlabel 7992 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002501.label Connecting and filling vertices in path at fillseed 8798 Finding path.................................................................................................................................................................................................................................................................................... done Filling 8798 nlabel 4679 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002601.label Connecting and filling vertices in path at fillseed 10832 Finding path............................................................................................................................................................................................................................................................................................................................................. done Filling 10832 nlabel 7163 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002701.label Connecting and filling vertices in path at fillseed 8895 Finding path........................................................................................................................................................................................................................................................................................................................................................ done Filling 8895 nlabel 8112 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002801.label Connecting and filling vertices in path at fillseed 8304 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 8304 nlabel 15952 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002901.label Connecting and filling vertices in path at fillseed 7530 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 7530 nlabel 14316 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003001.label Connecting and filling vertices in path at fillseed 10783 Finding path............................................................................................................................................................................................................................................................................................................................ done Filling 10783 nlabel 5268 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003101.label Connecting and filling vertices in path at fillseed 9859 Finding path............................................................................................................................................................................................................................................................................................................................................................. done Filling 9859 nlabel 7709 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003201.label Connecting and filling vertices in path at fillseed 8064 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 8064 nlabel 9475 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003301.label Connecting and filling vertices in path at fillseed 12275 Finding path................................................................................................................................................................................................................................................................................................................................................................... done Filling 12275 nlabel 7881 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003401.label Connecting and filling vertices in path at fillseed 11885 Finding path............................................................................................................................................................ done Filling 11885 nlabel 4042 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003501.label Connecting and filling vertices in path at fillseed 11912 Finding path.............................................................................................................................................................................................................................................................................................................................. done Filling 11912 nlabel 6380 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003601.label Connecting and filling vertices in path at fillseed 9426 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 9426 nlabel 14896 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003701.label Connecting and filling vertices in path at fillseed 9980 Finding path........................................................................................................................................................................................................................................................................ done Filling 9980 nlabel 9311 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003801.label Connecting and filling vertices in path at fillseed 13024 Finding path.................................................................................................................................... done Filling 13024 nlabel 3330 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003901.label Connecting and filling vertices in path at fillseed 11884 Finding path............................................................................................................................................................. done Filling 11884 nlabel 3458 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004001.label Connecting and filling vertices in path at fillseed 20082 Finding path.................................................................................................................................................................................................................................................................................................................................................................. done Filling 20082 nlabel 5680 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004101.label Connecting and filling vertices in path at fillseed 13086 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 13086 nlabel 7921 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004201.label Connecting and filling vertices in path at fillseed 12112 Finding path...................................................................................................................................................................................................................................................................... done Filling 12112 nlabel 9129 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004301.label Connecting and filling vertices in path at fillseed 9348 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 9348 nlabel 14544 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004401.label Connecting and filling vertices in path at fillseed 21301 Finding path........................................................................................................................................................................ done Filling 21301 nlabel 4200 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004501.label Connecting and filling vertices in path at fillseed 15342 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 15342 nlabel 7808 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004601.label Connecting and filling vertices in path at fillseed 16567 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 16567 nlabel 8631 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004701.label Connecting and filling vertices in path at fillseed 11180 Finding path................................................................................................................................................................................................................................................................................................ done Filling 11180 nlabel 10541 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004801.label Connecting and filling vertices in path at fillseed 10253 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 10253 nlabel 9957 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004901.label Connecting and filling vertices in path at fillseed 22538 Finding path............................................................................................................................................................................. done Filling 22538 nlabel 4300 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005001.label Connecting and filling vertices in path at fillseed 16531 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 16531 nlabel 7454 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005101.label Connecting and filling vertices in path at fillseed 12452 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 12452 nlabel 11016 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005201.label Connecting and filling vertices in path at fillseed 12005 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 12005 nlabel 6014 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005301.label Connecting and filling vertices in path at fillseed 22521 Finding path............................................................................................................................................................................................. done Filling 22521 nlabel 3597 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005401.label Connecting and filling vertices in path at fillseed 22552 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................. done Filling 22552 nlabel 6942 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005501.label Connecting and filling vertices in path at fillseed 17831 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 17831 nlabel 8940 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005601.label Connecting and filling vertices in path at fillseed 22544 Finding path............................................................................................................................................ done Filling 22544 nlabel 3412 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005701.label Connecting and filling vertices in path at fillseed 13689 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 13689 nlabel 14442 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005801.label Connecting and filling vertices in path at fillseed 22540 Finding path................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 22540 nlabel 3995 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005901.label Connecting and filling vertices in path at fillseed 13482 Finding path.............................................................................................................................................................................................................................................................................................................................................................. done Filling 13482 nlabel 9765 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006001.label Connecting and filling vertices in path at fillseed 14419 Finding path....................................................................................................................................................................................................................................................................................................................................................... done Filling 14419 nlabel 8444 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006101.label Connecting and filling vertices in path at fillseed 15819 Finding path................................................................................................................................................................................................................................................................................................................................................. done Filling 15819 nlabel 9395 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006201.label Connecting and filling vertices in path at fillseed 15071 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 15071 nlabel 15983 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006301.label Connecting and filling vertices in path at fillseed 21353 Finding path............................................................................................................................................................................................................................................................................................................................................................... done Filling 21353 nlabel 7661 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006401.label Connecting and filling vertices in path at fillseed 17100 Finding path........................................................................................................................................................................................................................................................................................................................... done Filling 17100 nlabel 9481 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006501.label Connecting and filling vertices in path at fillseed 16592 Finding path..................................................................................................................................................................................................................................................... done Filling 16592 nlabel 5415 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006601.label Connecting and filling vertices in path at fillseed 16180 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 16180 nlabel 13647 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006701.label Connecting and filling vertices in path at fillseed 25026 Finding path........................................................................................................................................................................................................................................................................................................................................................................................... done Filling 25026 nlabel 5208 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006801.label Connecting and filling vertices in path at fillseed 16128 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 16128 nlabel 15685 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006901.label Connecting and filling vertices in path at fillseed 19122 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 19122 nlabel 7805 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007001.label Connecting and filling vertices in path at fillseed 15971 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 15971 nlabel 10376 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007101.label Connecting and filling vertices in path at fillseed 19850 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 19850 nlabel 16134 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007201.label Connecting and filling vertices in path at fillseed 14983 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 14983 nlabel 16015 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007301.label Connecting and filling vertices in path at fillseed 23996 Finding path................................................................................................................................................................................................................................................................................ done Filling 23996 nlabel 8878 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007401.label Connecting and filling vertices in path at fillseed 15653 Finding path..................................................................................................................................................................................................................................................................................... done Filling 15653 nlabel 7197 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007501.label Connecting and filling vertices in path at fillseed 27493 Finding path............................................................................................................................................................................ done Filling 27493 nlabel 3699 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007601.label Connecting and filling vertices in path at fillseed 16158 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 16158 nlabel 16072 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007701.label Connecting and filling vertices in path at fillseed 19407 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 19407 nlabel 7792 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007801.label Connecting and filling vertices in path at fillseed 19372 Finding path.................................................................................................................................................................................................................................................................................................................................. done Filling 19372 nlabel 9221 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007901.label Connecting and filling vertices in path at fillseed 16239 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 16239 nlabel 16093 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008001.label Connecting and filling vertices in path at fillseed 19758 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 19758 nlabel 15403 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008101.label Connecting and filling vertices in path at fillseed 19539 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 19539 nlabel 10072 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008201.label Connecting and filling vertices in path at fillseed 20554 Finding path.............................................................................................................................................................................................................................................. done Filling 20554 nlabel 9253 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008301.label Connecting and filling vertices in path at fillseed 21088 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 21088 nlabel 16445 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008401.label Connecting and filling vertices in path at fillseed 20993 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 20993 nlabel 11763 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008501.label Connecting and filling vertices in path at fillseed 21868 Finding path................................................................................................................................................................................................................................................................................................................... done Filling 21868 nlabel 7130 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008601.label Connecting and filling vertices in path at fillseed 20247 Finding path.......................................................................................................................................................................................................................................................................... done Filling 20247 nlabel 6950 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008701.label Connecting and filling vertices in path at fillseed 27484 Finding path.................................................................................................................................................................................. done Filling 27484 nlabel 3683 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008801.label Connecting and filling vertices in path at fillseed 28827 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 28827 nlabel 6469 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008901.label Connecting and filling vertices in path at fillseed 28956 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 28956 nlabel 8954 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009001.label Connecting and filling vertices in path at fillseed 23014 Finding path........................................................................................................................................................................................................................................................................................................................................................................................ done Filling 23014 nlabel 7357 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009101.label Connecting and filling vertices in path at fillseed 24977 Finding path............................................................................................................................................................. done Filling 24977 nlabel 3305 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009201.label Connecting and filling vertices in path at fillseed 26008 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 26008 nlabel 15923 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009301.label Connecting and filling vertices in path at fillseed 27536 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 27536 nlabel 7298 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009401.label Connecting and filling vertices in path at fillseed 27766 Finding path................................................................................................................................................................................................................................................................. done Filling 27766 nlabel 8896 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009501.label Connecting and filling vertices in path at fillseed 24977 Finding path............................................................................................................................................................................................................................................ done Filling 24977 nlabel 3174 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009601.label Connecting and filling vertices in path at fillseed 27484 Finding path............................................................................................................................................................................................................................................... done Filling 27484 nlabel 3286 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009701.label Connecting and filling vertices in path at fillseed 31080 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 31080 nlabel 6524 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009801.label Connecting and filling vertices in path at fillseed 23432 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 23432 nlabel 29989 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009901.label Connecting and filling vertices in path at fillseed 24317 Finding path.......................................................................................................................................................................................................................................................................................................... done Filling 24317 nlabel 8100 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010001.label Connecting and filling vertices in path at fillseed 24113 Finding path............................................................................................................................................................................................................................................................................................................. done Filling 24113 nlabel 7003 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010101.label Connecting and filling vertices in path at fillseed 24711 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 24711 nlabel 16726 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010201.label Connecting and filling vertices in path at fillseed 23519 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 23519 nlabel 15482 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010301.label Connecting and filling vertices in path at fillseed 28942 Finding path....................................................................................................................................................................................................................................................................................................................................................................................... done Filling 28942 nlabel 9760 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010401.label Connecting and filling vertices in path at fillseed 30275 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 30275 nlabel 7351 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010501.label Connecting and filling vertices in path at fillseed 24515 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 24515 nlabel 13477 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010601.label Connecting and filling vertices in path at fillseed 27245 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 27245 nlabel 17053 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010701.label Connecting and filling vertices in path at fillseed 27536 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 27536 nlabel 6939 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010801.label Connecting and filling vertices in path at fillseed 28996 Finding path................................................................................................................................................................................................................................... done Filling 28996 nlabel 8917 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010901.label Connecting and filling vertices in path at fillseed 28899 Finding path.................................................................................................................................................................................................................................................................................. done Filling 28899 nlabel 6069 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011001.label Connecting and filling vertices in path at fillseed 27198 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 27198 nlabel 13591 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011101.label Connecting and filling vertices in path at fillseed 32020 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 32020 nlabel 29452 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011201.label Connecting and filling vertices in path at fillseed 28944 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 28944 nlabel 9884 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011301.label Connecting and filling vertices in path at fillseed 26283 Finding path.................................................................................................................................................................................................................... done Filling 26283 nlabel 4829 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011401.label Connecting and filling vertices in path at fillseed 27079 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 27079 nlabel 13971 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011501.label Connecting and filling vertices in path at fillseed 35514 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 35514 nlabel 3207 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011601.label Connecting and filling vertices in path at fillseed 29625 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 29625 nlabel 25207 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011701.label Connecting and filling vertices in path at fillseed 28976 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 28976 nlabel 8590 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011801.label Connecting and filling vertices in path at fillseed 28049 Finding path.................................................................................................................................................................................................................................................................................................................................................. done Filling 28049 nlabel 7195 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011901.label Connecting and filling vertices in path at fillseed 30903 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 30903 nlabel 18138 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012001.label Connecting and filling vertices in path at fillseed 37788 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 37788 nlabel 6420 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012101.label Connecting and filling vertices in path at fillseed 28975 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 28975 nlabel 8355 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012201.label Connecting and filling vertices in path at fillseed 36667 Finding path............................................................................................................................................................................. done Filling 36667 nlabel 3206 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012301.label Connecting and filling vertices in path at fillseed 37722 Finding path................................................................................................................................................................................................................. done Filling 37722 nlabel 1980 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012401.label Connecting and filling vertices in path at fillseed 33119 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 33119 nlabel 14650 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012501.label Connecting and filling vertices in path at fillseed 37855 Finding path..................................................................................................................................................................................................................................................................................................................................................................... done Filling 37855 nlabel 8904 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012601.label Connecting and filling vertices in path at fillseed 32483 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 32483 nlabel 8177 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012701.label Connecting and filling vertices in path at fillseed 37722 Finding path................................................................................................................................................. done Filling 37722 nlabel 2179 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012801.label Connecting and filling vertices in path at fillseed 38794 Finding path........................................................................................................................................................................................ done Filling 38794 nlabel 3514 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012901.label Connecting and filling vertices in path at fillseed 38874 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 38874 nlabel 6383 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013001.label Connecting and filling vertices in path at fillseed 36148 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 36148 nlabel 22824 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013101.label Connecting and filling vertices in path at fillseed 34664 Finding path............................................................................................................................................................................................. done Filling 34664 nlabel 6021 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013201.label Connecting and filling vertices in path at fillseed 34081 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 34081 nlabel 16511 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013301.label Connecting and filling vertices in path at fillseed 34142 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 34142 nlabel 30425 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013401.label Connecting and filling vertices in path at fillseed 30654 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 30654 nlabel 9950 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013501.label Connecting and filling vertices in path at fillseed 34823 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 34823 nlabel 8095 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013601.label Connecting and filling vertices in path at fillseed 32607 Finding path..................................................................................................................................................................................................................................................................................................................................... done Filling 32607 nlabel 7672 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013701.label Connecting and filling vertices in path at fillseed 40917 Finding path........................................................................................................................................................................................................ done Filling 40917 nlabel 3206 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013801.label Connecting and filling vertices in path at fillseed 38898 Finding path...................................................................................................................................................................................................................................................................................................................................................................................... done Filling 38898 nlabel 7540 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013901.label Connecting and filling vertices in path at fillseed 38354 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 38354 nlabel 23380 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014001.label Connecting and filling vertices in path at fillseed 37737 Finding path........................................................................................................................................ done Filling 37737 nlabel 2206 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014101.label Connecting and filling vertices in path at fillseed 37276 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 37276 nlabel 8587 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014201.label Connecting and filling vertices in path at fillseed 40907 Finding path............................................................................................................................................................................................. done Filling 40907 nlabel 3081 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014301.label Connecting and filling vertices in path at fillseed 38555 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 38555 nlabel 24983 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014401.label Connecting and filling vertices in path at fillseed 38384 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 38384 nlabel 22738 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014501.label Connecting and filling vertices in path at fillseed 33378 Finding path................................................................................................................................................................................................................................ done Filling 33378 nlabel 5461 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014601.label Connecting and filling vertices in path at fillseed 39812 Finding path.......................................................................................................................................................................................................................... done Filling 39812 nlabel 3171 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014701.label Connecting and filling vertices in path at fillseed 46235 Finding path............................................................................................................................................................................................................................................................ done Filling 46235 nlabel 4332 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014801.label Connecting and filling vertices in path at fillseed 46425 Finding path.......................................................................................................................................................................................................................................................................................................................................................... done Filling 46425 nlabel 7760 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014901.label Connecting and filling vertices in path at fillseed 42001 Finding path........................................................................................................................................... done Filling 42001 nlabel 2214 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015001.label Connecting and filling vertices in path at fillseed 46214 Finding path....................................................................................................................................................... done Filling 46214 nlabel 1892 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015101.label Connecting and filling vertices in path at fillseed 38566 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 38566 nlabel 30039 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015201.label Connecting and filling vertices in path at fillseed 44113 Finding path.................................................................................................................................................................................................................................................................................................................................................................................... done Filling 44113 nlabel 7876 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015301.label Connecting and filling vertices in path at fillseed 41274 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 41274 nlabel 8657 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015401.label Connecting and filling vertices in path at fillseed 36873 Finding path..................................................................................................................................................................................... done Filling 36873 nlabel 6084 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015501.label Connecting and filling vertices in path at fillseed 47341 Finding path.................................................................................................................................................................................................................... done Filling 47341 nlabel 2863 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015601.label Connecting and filling vertices in path at fillseed 46235 Finding path............................................................................................................................................................................................................................................ done Filling 46235 nlabel 4316 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015701.label Connecting and filling vertices in path at fillseed 46391 Finding path.................................................................................................................................................................................................................................................................................................................................................................... done Filling 46391 nlabel 7889 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015801.label Connecting and filling vertices in path at fillseed 38240 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 38240 nlabel 9880 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015901.label Connecting and filling vertices in path at fillseed 47351 Finding path................................................................................................................................................ done Filling 47351 nlabel 1985 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016001.label Connecting and filling vertices in path at fillseed 47326 Finding path................................................................................................................................................................................................................. done Filling 47326 nlabel 2266 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016101.label Connecting and filling vertices in path at fillseed 41738 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 41738 nlabel 30649 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016201.label Connecting and filling vertices in path at fillseed 43076 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 43076 nlabel 7767 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016301.label Connecting and filling vertices in path at fillseed 41256 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 41256 nlabel 7947 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016401.label Connecting and filling vertices in path at fillseed 46213 Finding path................................................................................................................................................................. done Filling 46213 nlabel 2122 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016501.label Connecting and filling vertices in path at fillseed 48392 Finding path.............................................................................................................................................. done Filling 48392 nlabel 2288 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016601.label Connecting and filling vertices in path at fillseed 45095 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 45095 nlabel 6783 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016701.label Connecting and filling vertices in path at fillseed 47497 Finding path................................................................................................................................................................................................................................................................................................................................................................................ done Filling 47497 nlabel 7956 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016801.label Connecting and filling vertices in path at fillseed 40349 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 40349 nlabel 8607 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016901.label Connecting and filling vertices in path at fillseed 36836 Finding path..................................................................................................................................................................................................... done Filling 36836 nlabel 6365 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017001.label Connecting and filling vertices in path at fillseed 43936 Finding path.......................................................................................................................................................................... done Filling 43936 nlabel 2932 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017101.label Connecting and filling vertices in path at fillseed 46049 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 46049 nlabel 27629 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017201.label Connecting and filling vertices in path at fillseed 47537 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 47537 nlabel 6516 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017301.label Connecting and filling vertices in path at fillseed 45106 Finding path.............................................................................................................................................................. done Filling 45106 nlabel 3463 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017401.label Connecting and filling vertices in path at fillseed 45836 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 45836 nlabel 8014 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017501.label Connecting and filling vertices in path at fillseed 46211 Finding path....................................................................................................................................................................................................... done Filling 46211 nlabel 4073 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017601.label Connecting and filling vertices in path at fillseed 46049 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 46049 nlabel 23273 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017701.label Connecting and filling vertices in path at fillseed 48507 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 48507 nlabel 7159 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017801.label Connecting and filling vertices in path at fillseed 48725 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 48725 nlabel 7353 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017901.label Connecting and filling vertices in path at fillseed 48424 Finding path...................................................................................................................................................................................................... done Filling 48424 nlabel 2330 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018001.label Connecting and filling vertices in path at fillseed 44700 Finding path........................................................................................................................................................................................................................................................................................................................................................................ done Filling 44700 nlabel 8822 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018101.label Connecting and filling vertices in path at fillseed 46211 Finding path................................................................................................................................................................................................................................................ done Filling 46211 nlabel 4113 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018201.label Connecting and filling vertices in path at fillseed 44806 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 44806 nlabel 22970 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018301.label Connecting and filling vertices in path at fillseed 43456 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 43456 nlabel 8657 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018401.label Connecting and filling vertices in path at fillseed 47683 Finding path....................................................................................................................................................................................... done Filling 47683 nlabel 6470 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018501.label Connecting and filling vertices in path at fillseed 48099 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 48099 nlabel 10474 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018601.label Connecting and filling vertices in path at fillseed 50740 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 50740 nlabel 7965 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018701.label Connecting and filling vertices in path at fillseed 48138 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 48138 nlabel 21528 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018801.label Connecting and filling vertices in path at fillseed 47387 Finding path............................................................................................................................................. done Filling 47387 nlabel 4388 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018901.label Connecting and filling vertices in path at fillseed 51805 Finding path.................................................................................................................................................... done Filling 51805 nlabel 2250 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019001.label Connecting and filling vertices in path at fillseed 49389 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 49389 nlabel 23117 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019101.label Connecting and filling vertices in path at fillseed 49261 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 49261 nlabel 23198 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019201.label Connecting and filling vertices in path at fillseed 49531 Finding path............................................................................................................................................................................................... done Filling 49531 nlabel 1879 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019301.label Connecting and filling vertices in path at fillseed 47992 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 47992 nlabel 6426 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019401.label Connecting and filling vertices in path at fillseed 54957 Finding path................................................................................................................................................................................................................................................................................................... done Filling 54957 nlabel 6065 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019501.label Connecting and filling vertices in path at fillseed 49260 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 49260 nlabel 23150 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019601.label Connecting and filling vertices in path at fillseed 49550 Finding path...................................................................................................................... done Filling 49550 nlabel 3077 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019701.label Connecting and filling vertices in path at fillseed 49108 Finding path....................................................................................................................................................................................................................................................................................................................................................... done Filling 49108 nlabel 6618 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019801.label Connecting and filling vertices in path at fillseed 48239 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 48239 nlabel 23565 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019901.label Connecting and filling vertices in path at fillseed 49802 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 49802 nlabel 8978 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020001.label Connecting and filling vertices in path at fillseed 50311 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 50311 nlabel 8483 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020101.label Connecting and filling vertices in path at fillseed 51117 Finding path............................................................................................................................................................................. done Filling 51117 nlabel 6436 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020201.label Connecting and filling vertices in path at fillseed 47345 Finding path..................................................................................................................................................... done Filling 47345 nlabel 2687 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020301.label Connecting and filling vertices in path at fillseed 50768 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 50768 nlabel 10267 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020401.label Connecting and filling vertices in path at fillseed 47884 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 47884 nlabel 9877 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020501.label Connecting and filling vertices in path at fillseed 50769 Finding path........................................................................................................................................................................ done Filling 50769 nlabel 4712 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020601.label Connecting and filling vertices in path at fillseed 51381 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 51381 nlabel 6906 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020701.label Connecting and filling vertices in path at fillseed 55819 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 55819 nlabel 20418 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020801.label Connecting and filling vertices in path at fillseed 53974 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 53974 nlabel 8943 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020901.label Connecting and filling vertices in path at fillseed 54221 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 54221 nlabel 7544 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021001.label Connecting and filling vertices in path at fillseed 52054 Finding path.......................................................................................................................................................................................... done Filling 52054 nlabel 6277 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021101.label Connecting and filling vertices in path at fillseed 52818 Finding path................................................................................................................................................................. done Filling 52818 nlabel 2537 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021201.label Connecting and filling vertices in path at fillseed 53612 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 53612 nlabel 22180 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021301.label Connecting and filling vertices in path at fillseed 55312 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 55312 nlabel 7272 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021401.label Connecting and filling vertices in path at fillseed 52847 Finding path....................................................................................................................................................................................................................... done Filling 52847 nlabel 2895 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021501.label Connecting and filling vertices in path at fillseed 53874 Finding path........................................................................................................................ done Filling 53874 nlabel 1752 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021601.label Connecting and filling vertices in path at fillseed 56919 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 56919 nlabel 21588 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021701.label Connecting and filling vertices in path at fillseed 55069 Finding path.............................................................................................................................................................................................................................................................................................................................................................................. done Filling 55069 nlabel 7406 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021801.label Connecting and filling vertices in path at fillseed 53892 Finding path.......................................................................................................................................................................... done Filling 53892 nlabel 1271 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021901.label Connecting and filling vertices in path at fillseed 52287 Finding path........................................................................................................................................................... done Filling 52287 nlabel 6237 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022001.label Connecting and filling vertices in path at fillseed 58314 Finding path................................................................................................................................................................................................................................ done Filling 58314 nlabel 5084 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022101.label Connecting and filling vertices in path at fillseed 57300 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 57300 nlabel 8269 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022201.label Connecting and filling vertices in path at fillseed 57616 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 57616 nlabel 7081 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022301.label Connecting and filling vertices in path at fillseed 53993 Finding path.......................................................................................................................................... done Filling 53993 nlabel 5509 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022401.label Connecting and filling vertices in path at fillseed 64814 Finding path......................................................................................................................................... done Filling 64814 nlabel 2575 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022501.label Connecting and filling vertices in path at fillseed 56921 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 56921 nlabel 21492 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022601.label Connecting and filling vertices in path at fillseed 56206 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 56206 nlabel 6970 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022701.label Connecting and filling vertices in path at fillseed 53892 Finding path....................................................................................................................................................... done Filling 53892 nlabel 1049 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022801.label Connecting and filling vertices in path at fillseed 56541 Finding path.................................................................................................................................................................................................................................... done Filling 56541 nlabel 6390 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022901.label Connecting and filling vertices in path at fillseed 56890 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 56890 nlabel 22348 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023001.label Connecting and filling vertices in path at fillseed 57310 Finding path.............................................................................................................................................................................................................................................................................................................................................................................. done Filling 57310 nlabel 6692 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023101.label Connecting and filling vertices in path at fillseed 56727 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 56727 nlabel 7553 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023201.label Connecting and filling vertices in path at fillseed 54057 Finding path............................................................................................................................................................... done Filling 54057 nlabel 6107 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023301.label Connecting and filling vertices in path at fillseed 57911 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 57911 nlabel 22257 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023401.label Connecting and filling vertices in path at fillseed 58050 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 58050 nlabel 19447 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023501.label Connecting and filling vertices in path at fillseed 57569 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 57569 nlabel 8157 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023601.label Connecting and filling vertices in path at fillseed 57182 Finding path............................................................................................................................................................. done Filling 57182 nlabel 2643 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023701.label Connecting and filling vertices in path at fillseed 128964 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................. done Filling 128964 nlabel 6232 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023801.label Connecting and filling vertices in path at fillseed 58329 Finding path.................................................................................................................................................................................................................................................................. done Filling 58329 nlabel 5728 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023901.label Connecting and filling vertices in path at fillseed 58523 Finding path.................................................................................................................................................................................................................................................................................................................................. done Filling 58523 nlabel 7500 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024001.label Connecting and filling vertices in path at fillseed 53893 Finding path...................................................................................................................... done Filling 53893 nlabel 1674 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024101.label Connecting and filling vertices in path at fillseed 65848 Finding path..................................................................................................................... done Filling 65848 nlabel 1742 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024201.label Connecting and filling vertices in path at fillseed 60254 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60254 nlabel 20856 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024301.label Connecting and filling vertices in path at fillseed 61348 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 61348 nlabel 20634 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024401.label Connecting and filling vertices in path at fillseed 58738 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 58738 nlabel 11097 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024501.label Connecting and filling vertices in path at fillseed 61035 Finding path.................................................................................................................................................................................................................................................................................. done Filling 61035 nlabel 6743 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024601.label Connecting and filling vertices in path at fillseed 58340 Finding path................................................................................................................................................................................................................ done Filling 58340 nlabel 4470 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024701.label Connecting and filling vertices in path at fillseed 64089 Finding path........................................................................................................................................................................................................................................................................................................................................................ done Filling 64089 nlabel 7393 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024801.label Connecting and filling vertices in path at fillseed 53893 Finding path.......................................................................................................................................................................... done Filling 53893 nlabel 1512 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024901.label Connecting and filling vertices in path at fillseed 62146 Finding path....................................................................................................................................................................................................................................................................................................................... done Filling 62146 nlabel 6499 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025001.label Connecting and filling vertices in path at fillseed 58340 Finding path............................................................................................................................................................................................................................................................................................ done Filling 58340 nlabel 4373 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025101.label Connecting and filling vertices in path at fillseed 59620 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 59620 nlabel 6142 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025201.label Connecting and filling vertices in path at fillseed 60978 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60978 nlabel 11568 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025301.label Connecting and filling vertices in path at fillseed 63200 Finding path................................................................................................................................................................................................................................................................................................................................... done Filling 63200 nlabel 6567 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025401.label Connecting and filling vertices in path at fillseed 64811 Finding path......................................................................................................................................................................................................................................... done Filling 64811 nlabel 3703 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025501.label Connecting and filling vertices in path at fillseed 61353 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 61353 nlabel 18737 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025601.label Connecting and filling vertices in path at fillseed 63430 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 63430 nlabel 9484 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025701.label Connecting and filling vertices in path at fillseed 64279 Finding path.......................................................................................................................................................................................................... done Filling 64279 nlabel 6287 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025801.label Connecting and filling vertices in path at fillseed 67591 Finding path............................................................................................................................................................................ done Filling 67591 nlabel 6071 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025901.label Connecting and filling vertices in path at fillseed 64613 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 64613 nlabel 19845 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026001.label Connecting and filling vertices in path at fillseed 66136 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 66136 nlabel 6047 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026101.label Connecting and filling vertices in path at fillseed 72626 Finding path............................................................................................................................................................................... done Filling 72626 nlabel 2069 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026201.label Connecting and filling vertices in path at fillseed 68060 Finding path....................................................................................................................... done Filling 68060 nlabel 1749 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026301.label Connecting and filling vertices in path at fillseed 62738 Finding path.................................................................................................................................................................................................................................................................... done Filling 62738 nlabel 4390 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026401.label Connecting and filling vertices in path at fillseed 63553 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 63553 nlabel 19938 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026501.label Connecting and filling vertices in path at fillseed 63373 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 63373 nlabel 11073 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026601.label Connecting and filling vertices in path at fillseed 64896 Finding path.............................................................................................................................................................. done Filling 64896 nlabel 4188 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026701.label Connecting and filling vertices in path at fillseed 62375 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 62375 nlabel 6430 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026801.label Connecting and filling vertices in path at fillseed 64947 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 64947 nlabel 5973 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026901.label Connecting and filling vertices in path at fillseed 66170 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 66170 nlabel 8787 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027001.label Connecting and filling vertices in path at fillseed 68514 Finding path............................................................................................................................................................................................................................................... done Filling 68514 nlabel 5509 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027101.label Connecting and filling vertices in path at fillseed 71563 Finding path...................................................................................................................................................................................................................................................... done Filling 71563 nlabel 3520 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027201.label Connecting and filling vertices in path at fillseed 67756 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 67756 nlabel 18492 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027301.label Connecting and filling vertices in path at fillseed 67248 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 67248 nlabel 7412 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027401.label Connecting and filling vertices in path at fillseed 68496 Finding path............................................................................................................................................................................................................. done Filling 68496 nlabel 5564 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027501.label Connecting and filling vertices in path at fillseed 71563 Finding path........................................................................................................................................................ done Filling 71563 nlabel 1709 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027601.label Connecting and filling vertices in path at fillseed 62738 Finding path......................................................................................................................................................................................................................................................... done Filling 62738 nlabel 4947 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027701.label Connecting and filling vertices in path at fillseed 67794 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 67794 nlabel 121098 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027801.label Connecting and filling vertices in path at fillseed 73709 Finding path...................................................................................................................................................................................... done Filling 73709 nlabel 799 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027901.label Connecting and filling vertices in path at fillseed 71562 Finding path...................................................................................................................................... done Filling 71562 nlabel 1762 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028001.label Connecting and filling vertices in path at fillseed 65857 Finding path............................................................................................................................................................................................................................................................. done Filling 65857 nlabel 4501 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028101.label Connecting and filling vertices in path at fillseed 70123 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 70123 nlabel 23634 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028201.label Connecting and filling vertices in path at fillseed 69952 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 69952 nlabel 10847 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028301.label Connecting and filling vertices in path at fillseed 71616 Finding path............................................................................................................................................................................ done Filling 71616 nlabel 4181 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028401.label Connecting and filling vertices in path at fillseed 68068 Finding path.............................................................................................................................................................................................................................................................................................................. done Filling 68068 nlabel 4029 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028501.label Connecting and filling vertices in path at fillseed 68159 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 68159 nlabel 6430 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028601.label Connecting and filling vertices in path at fillseed 68380 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 68380 nlabel 6184 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028701.label Connecting and filling vertices in path at fillseed 73726 Finding path...................................................................................................................................................................... done Filling 73726 nlabel 2580 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028801.label Connecting and filling vertices in path at fillseed 73195 Finding path.................................................................................................................................................. done Filling 73195 nlabel 6105 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028901.label Connecting and filling vertices in path at fillseed 63821 Finding path........................................................................................................................................................................................................................................................................................................................................................... done Filling 63821 nlabel 5981 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029001.label Connecting and filling vertices in path at fillseed 67216 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 67216 nlabel 5965 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029101.label Connecting and filling vertices in path at fillseed 74022 Finding path.................................................................................................................................................................................. done Filling 74022 nlabel 6040 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029201.label Connecting and filling vertices in path at fillseed 73703 Finding path.................................................................................................................................................................................................................................................................................................................... done Filling 73703 nlabel 1611 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029301.label Connecting and filling vertices in path at fillseed 128997 Finding path................................................................................................................................................................................................................................................................................................................................................. done Filling 128997 nlabel 5487 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029401.label Connecting and filling vertices in path at fillseed 68360 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 68360 nlabel 5783 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029501.label Connecting and filling vertices in path at fillseed 73269 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 73269 nlabel 9840 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029601.label Connecting and filling vertices in path at fillseed 75106 Finding path........................................................................................................................................................................... done Filling 75106 nlabel 4621 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029701.label Connecting and filling vertices in path at fillseed 72323 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 72323 nlabel 5382 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029801.label Connecting and filling vertices in path at fillseed 74407 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 74407 nlabel 115645 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029901.label Connecting and filling vertices in path at fillseed 68380 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 68380 nlabel 7855 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030001.label Connecting and filling vertices in path at fillseed 75823 Finding path................................................................................................................. done Filling 75823 nlabel 1538 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030101.label Connecting and filling vertices in path at fillseed 75164 Finding path........................................................................................................................................................................................................ done Filling 75164 nlabel 5857 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030201.label Connecting and filling vertices in path at fillseed 75517 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 75517 nlabel 4567 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030301.label Connecting and filling vertices in path at fillseed 74899 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 74899 nlabel 6722 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030401.label Connecting and filling vertices in path at fillseed 76469 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 76469 nlabel 123258 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030501.label Connecting and filling vertices in path at fillseed 74789 Finding path............................................................................................................................................................................ done Filling 74789 nlabel 3819 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030601.label Connecting and filling vertices in path at fillseed 129035 Finding path......................................................................................................... done Filling 129035 nlabel 5896 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030701.label Connecting and filling vertices in path at fillseed 76565 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 76565 nlabel 13480 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030801.label Connecting and filling vertices in path at fillseed 78143 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 78143 nlabel 7318 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030901.label Connecting and filling vertices in path at fillseed 75276 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 75276 nlabel 12772 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031001.label Connecting and filling vertices in path at fillseed 77242 Finding path........................................................................................................................................................................ done Filling 77242 nlabel 4879 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031101.label Connecting and filling vertices in path at fillseed 79667 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 79667 nlabel 4741 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031201.label Connecting and filling vertices in path at fillseed 129022 Finding path......................................................................................................................................................................................................................................................................................................................................................................... done Filling 129022 nlabel 7042 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031301.label Connecting and filling vertices in path at fillseed 75047 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 75047 nlabel 9447 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031401.label Connecting and filling vertices in path at fillseed 77928 Finding path................................................................................... done Filling 77928 nlabel 2180 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031501.label Connecting and filling vertices in path at fillseed 75834 Finding path............................................................................................................................................................................................................... done Filling 75834 nlabel 2512 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031601.label Connecting and filling vertices in path at fillseed 78625 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 78625 nlabel 125776 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031701.label Connecting and filling vertices in path at fillseed 79158 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 79158 nlabel 8141 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031801.label Connecting and filling vertices in path at fillseed 76937 Finding path........................................................................................... done Filling 76937 nlabel 1381 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031901.label Connecting and filling vertices in path at fillseed 79424 Finding path........................................................................................................ done Filling 79424 nlabel 5322 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032001.label Connecting and filling vertices in path at fillseed 80767 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 80767 nlabel 5025 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032101.label Connecting and filling vertices in path at fillseed 79040 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 79040 nlabel 7622 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032201.label Connecting and filling vertices in path at fillseed 76204 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 76204 nlabel 11246 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032301.label Connecting and filling vertices in path at fillseed 78908 Finding path................................................................................................................................................................................... done Filling 78908 nlabel 3508 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032401.label Connecting and filling vertices in path at fillseed 129040 Finding path...................................................................................................................................................... done Filling 129040 nlabel 5800 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032501.label Connecting and filling vertices in path at fillseed 79651 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 79651 nlabel 126320 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032601.label Connecting and filling vertices in path at fillseed 79158 Finding path................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 79158 nlabel 8357 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032701.label Connecting and filling vertices in path at fillseed 81392 Finding path................................................................................................................................................................ done Filling 81392 nlabel 5346 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032801.label Connecting and filling vertices in path at fillseed 80444 Finding path....................................................................................................................................................................................... done Filling 80444 nlabel 6763 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032901.label Connecting and filling vertices in path at fillseed 76932 Finding path........................................................................................................................................................................................................... done Filling 76932 nlabel 4927 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033001.label Connecting and filling vertices in path at fillseed 82222 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 82222 nlabel 7750 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033101.label Connecting and filling vertices in path at fillseed 80706 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 80706 nlabel 121520 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033201.label Connecting and filling vertices in path at fillseed 82505 Finding path........................................................................................................................................................................ done Filling 82505 nlabel 4832 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033301.label Connecting and filling vertices in path at fillseed 76940 Finding path.......................................................................................... done Filling 76940 nlabel 1397 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033401.label Connecting and filling vertices in path at fillseed 81882 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 81882 nlabel 4393 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033501.label Connecting and filling vertices in path at fillseed 79074 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 79074 nlabel 7499 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033601.label Connecting and filling vertices in path at fillseed 80528 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 80528 nlabel 11687 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033701.label Connecting and filling vertices in path at fillseed 84735 Finding path................................................................................................................................................... done Filling 84735 nlabel 5383 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033801.label Connecting and filling vertices in path at fillseed 76933 Finding path................................................................................................................................................................................................................. done Filling 76933 nlabel 4705 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033901.label Connecting and filling vertices in path at fillseed 79074 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 79074 nlabel 6222 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034001.label Connecting and filling vertices in path at fillseed 82839 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 82839 nlabel 122788 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034101.label Connecting and filling vertices in path at fillseed 84289 Finding path............................................................................................................................................................. done Filling 84289 nlabel 3806 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034201.label Connecting and filling vertices in path at fillseed 88052 Finding path................................................................................................................................................. done Filling 88052 nlabel 5600 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034301.label Connecting and filling vertices in path at fillseed 83233 Finding path................................................................................................................................................................... done Filling 83233 nlabel 4872 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034401.label Connecting and filling vertices in path at fillseed 83901 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 83901 nlabel 8880 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034501.label Connecting and filling vertices in path at fillseed 84870 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 84870 nlabel 11780 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034601.label Connecting and filling vertices in path at fillseed 83173 Finding path................................................................................................................................................................................. done Filling 83173 nlabel 2986 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034701.label Connecting and filling vertices in path at fillseed 88141 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 88141 nlabel 5248 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034801.label Connecting and filling vertices in path at fillseed 86112 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 86112 nlabel 2210 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034901.label Connecting and filling vertices in path at fillseed 84550 Finding path............................................................................................................................................................................................................................................................................................................................................... done Filling 84550 nlabel 8564 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035001.label Connecting and filling vertices in path at fillseed 84345 Finding path.................................................................................................................................................................. done Filling 84345 nlabel 4178 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035101.label Connecting and filling vertices in path at fillseed 86917 Finding path................................................................................................................. done Filling 86917 nlabel 5336 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035201.label Connecting and filling vertices in path at fillseed 86058 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 86058 nlabel 4640 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035301.label Connecting and filling vertices in path at fillseed 87241 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 87241 nlabel 125925 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035401.label Connecting and filling vertices in path at fillseed 86840 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 86840 nlabel 14222 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035501.label Connecting and filling vertices in path at fillseed 87444 Finding path............................................................................................................................................................ done Filling 87444 nlabel 3793 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035601.label Connecting and filling vertices in path at fillseed 88117 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 88117 nlabel 5089 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035701.label Connecting and filling vertices in path at fillseed 83233 Finding path............................................................................................................................................................................................................................................................................................................................................... done Filling 83233 nlabel 5852 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035801.label Connecting and filling vertices in path at fillseed 85572 Finding path..................................................................................................................................................................................................................................................................................................................... done Filling 85572 nlabel 8383 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035901.label Connecting and filling vertices in path at fillseed 86477 Finding path........................................................................................................................................................................................ done Filling 86477 nlabel 4493 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036001.label Connecting and filling vertices in path at fillseed 88957 Finding path........................................................................................................................................................................ done Filling 88957 nlabel 4939 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036101.label Connecting and filling vertices in path at fillseed 81075 Finding path............................................................................................................................................... done Filling 81075 nlabel 5373 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036201.label Connecting and filling vertices in path at fillseed 90987 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 90987 nlabel 6412 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036301.label Connecting and filling vertices in path at fillseed 88833 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 88833 nlabel 14313 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036401.label Connecting and filling vertices in path at fillseed 86351 Finding path............................................................................................................................................... done Filling 86351 nlabel 2618 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036501.label Connecting and filling vertices in path at fillseed 77932 Finding path............................................................................................................................................................................................................................ done Filling 77932 nlabel 3337 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036601.label Connecting and filling vertices in path at fillseed 129329 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 129329 nlabel 2021 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036701.label Connecting and filling vertices in path at fillseed 88082 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 88082 nlabel 121915 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036801.label Connecting and filling vertices in path at fillseed 90440 Finding path...................................................................................................................................................... done Filling 90440 nlabel 4634 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036901.label Connecting and filling vertices in path at fillseed 79935 Finding path....................................................... done Filling 79935 nlabel 1223 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037001.label Connecting and filling vertices in path at fillseed 83189 Finding path.................................................................................................................................................................................... done Filling 83189 nlabel 5358 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037101.label Connecting and filling vertices in path at fillseed 88531 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 88531 nlabel 9100 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037201.label Connecting and filling vertices in path at fillseed 89776 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 89776 nlabel 12403 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037301.label Connecting and filling vertices in path at fillseed 91528 Finding path.................................................................................................................................... done Filling 91528 nlabel 5096 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037401.label Connecting and filling vertices in path at fillseed 77932 Finding path..................................................................................................................................................................................................................................... done Filling 77932 nlabel 3325 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037501.label Connecting and filling vertices in path at fillseed 84302 Finding path................................................................................................................................................................................... done Filling 84302 nlabel 5358 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037601.label Connecting and filling vertices in path at fillseed 90906 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 90906 nlabel 121363 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037701.label Connecting and filling vertices in path at fillseed 92502 Finding path....................................................................................................................................................................................... done Filling 92502 nlabel 4788 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037801.label Connecting and filling vertices in path at fillseed 91792 Finding path............................................................................................................................................................................................................................................................... done Filling 91792 nlabel 5396 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037901.label Connecting and filling vertices in path at fillseed 91973 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 91973 nlabel 4195 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038001.label Connecting and filling vertices in path at fillseed 91982 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 91982 nlabel 4360 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038101.label Connecting and filling vertices in path at fillseed 90740 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 90740 nlabel 13537 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038201.label Connecting and filling vertices in path at fillseed 93525 Finding path......................................................................................................................................... done Filling 93525 nlabel 5196 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038301.label Connecting and filling vertices in path at fillseed 92922 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 92922 nlabel 5607 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038401.label Connecting and filling vertices in path at fillseed 92009 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 92009 nlabel 125932 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038501.label Connecting and filling vertices in path at fillseed 94451 Finding path................................................................................................................................................................................................................................................................................................................................... done Filling 94451 nlabel 7898 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038601.label Connecting and filling vertices in path at fillseed 93287 Finding path..................................................................................................................................................... done Filling 93287 nlabel 3807 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038701.label Connecting and filling vertices in path at fillseed 94927 Finding path................................................................................................................................................................................................................................................................................................................................................ done Filling 94927 nlabel 5965 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038801.label Connecting and filling vertices in path at fillseed 95036 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 95036 nlabel 5276 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038901.label Connecting and filling vertices in path at fillseed 93395 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 93395 nlabel 7642 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039001.label Connecting and filling vertices in path at fillseed 96535 Finding path............................................................................................................................................. done Filling 96535 nlabel 5163 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039101.label Connecting and filling vertices in path at fillseed 81041 Finding path............................................. done Filling 81041 nlabel 1417 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039201.label Connecting and filling vertices in path at fillseed 129714 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 129714 nlabel 4498 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039301.label Connecting and filling vertices in path at fillseed 91401 Finding path............................................................................................................................................................................................................................................................................................................................................................................. done Filling 91401 nlabel 7260 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039401.label Connecting and filling vertices in path at fillseed 91718 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 91718 nlabel 11580 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039501.label Connecting and filling vertices in path at fillseed 96685 Finding path.............................................................................................................................................................................................................................................................. done Filling 96685 nlabel 5166 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039601.label Connecting and filling vertices in path at fillseed 96841 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 96841 nlabel 4543 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039701.label Connecting and filling vertices in path at fillseed 98162 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 98162 nlabel 4943 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039801.label Connecting and filling vertices in path at fillseed 89638 Finding path............................................................................................................................................................................................................................................................................................................................... done Filling 89638 nlabel 8131 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039901.label Connecting and filling vertices in path at fillseed 96252 Finding path................................................................................................................................. done Filling 96252 nlabel 3436 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040001.label Connecting and filling vertices in path at fillseed 98697 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 98697 nlabel 6074 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040101.label Connecting and filling vertices in path at fillseed 98162 Finding path............................................................................................................................................................................................................................................................................................... done Filling 98162 nlabel 4934 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040201.label Connecting and filling vertices in path at fillseed 95466 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 95466 nlabel 8015 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040301.label Connecting and filling vertices in path at fillseed 92651 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 92651 nlabel 14090 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040401.label Connecting and filling vertices in path at fillseed 98506 Finding path............................................................................................................................................................................................................................................................................................................. done Filling 98506 nlabel 5060 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040501.label Connecting and filling vertices in path at fillseed 96203 Finding path............................................................................................................................................................................................. done Filling 96203 nlabel 3498 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040601.label Connecting and filling vertices in path at fillseed 98162 Finding path................................................................................................................................................................................................................................................................................. done Filling 98162 nlabel 3464 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040701.label Connecting and filling vertices in path at fillseed 96397 Finding path.................................................................................................................................................................................................................................................................................................................................. done Filling 96397 nlabel 7396 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040801.label Connecting and filling vertices in path at fillseed 98146 Finding path.................................................................................................................... done Filling 98146 nlabel 3389 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040901.label Connecting and filling vertices in path at fillseed 101753 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 101753 nlabel 6270 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041001.label Connecting and filling vertices in path at fillseed 129445 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 129445 nlabel 126835 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041101.label Connecting and filling vertices in path at fillseed 97324 Finding path............................................................................................................................................................................................................................................................................................................................................................................. done Filling 97324 nlabel 6781 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041201.label Connecting and filling vertices in path at fillseed 94846 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 94846 nlabel 11040 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041301.label Connecting and filling vertices in path at fillseed 100924 Finding path.............................................................................................................................................................................................................................................................................................................................................................. done Filling 100924 nlabel 4798 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041401.label Connecting and filling vertices in path at fillseed 96209 Finding path............................................................................................................................................................................................... done Filling 96209 nlabel 3990 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041501.label Connecting and filling vertices in path at fillseed 100367 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 100367 nlabel 125899 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041601.label Connecting and filling vertices in path at fillseed 99282 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 99282 nlabel 14199 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041701.label Connecting and filling vertices in path at fillseed 98977 Finding path.............................................................................................................................................................. done Filling 98977 nlabel 3132 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041801.label Connecting and filling vertices in path at fillseed 101050 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 101050 nlabel 6653 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041901.label Connecting and filling vertices in path at fillseed 98162 Finding path................................................................................................................................................................................................................................................................................................. done Filling 98162 nlabel 3793 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042001.label Connecting and filling vertices in path at fillseed 97344 Finding path.................................................................................................................................................................................................................................................................................................................................... done Filling 97344 nlabel 7717 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042101.label Connecting and filling vertices in path at fillseed 99111 Finding path...................................................................................................................... done Filling 99111 nlabel 4474 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042201.label Connecting and filling vertices in path at fillseed 100485 Finding path.......................................................................................................................................... done Filling 100485 nlabel 2661 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042301.label Connecting and filling vertices in path at fillseed 98161 Finding path......................................................................................................................................................................................................................................................................... done Filling 98161 nlabel 4128 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042401.label Connecting and filling vertices in path at fillseed 98713 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 98713 nlabel 122526 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042501.label Connecting and filling vertices in path at fillseed 103957 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 103957 nlabel 11410 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042601.label Connecting and filling vertices in path at fillseed 102433 Finding path........................................................................................................................................................................................................................................................................................................................................................ done Filling 102433 nlabel 4950 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042701.label Connecting and filling vertices in path at fillseed 103335 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 103335 nlabel 4201 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042801.label Connecting and filling vertices in path at fillseed 100324 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 100324 nlabel 125205 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042901.label Connecting and filling vertices in path at fillseed 102335 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 102335 nlabel 14852 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043001.label Connecting and filling vertices in path at fillseed 103043 Finding path.................................................................................................................... done Filling 103043 nlabel 4743 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043101.label Connecting and filling vertices in path at fillseed 103313 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 103313 nlabel 5693 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043201.label Connecting and filling vertices in path at fillseed 98202 Finding path.......................................................................................................................................................................................................................................................................................................... done Filling 98202 nlabel 9234 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043301.label Connecting and filling vertices in path at fillseed 104584 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 104584 nlabel 12834 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043401.label Connecting and filling vertices in path at fillseed 103520 Finding path.................................................................................................................................................................................... done Filling 103520 nlabel 3540 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043501.label Connecting and filling vertices in path at fillseed 100488 Finding path.......................................................................................................................................................................... done Filling 100488 nlabel 3448 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043601.label Connecting and filling vertices in path at fillseed 103402 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 103402 nlabel 126387 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043701.label Connecting and filling vertices in path at fillseed 104514 Finding path......................................................................................................................................................................................................................................................................................................................... done Filling 104514 nlabel 7469 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043801.label Connecting and filling vertices in path at fillseed 102730 Finding path..................................................... done Filling 102730 nlabel 1723 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043901.label Connecting and filling vertices in path at fillseed 101279 Finding path............................................................................................. done Filling 101279 nlabel 1961 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044001.label Connecting and filling vertices in path at fillseed 129526 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 129526 nlabel 124629 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044101.label Connecting and filling vertices in path at fillseed 106353 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 106353 nlabel 123969 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044201.label Connecting and filling vertices in path at fillseed 103911 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 103911 nlabel 13678 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044301.label Connecting and filling vertices in path at fillseed 104987 Finding path.............................................................................................................. done Filling 104987 nlabel 3005 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044401.label Connecting and filling vertices in path at fillseed 105521 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 105521 nlabel 6136 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044501.label Connecting and filling vertices in path at fillseed 103408 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 103408 nlabel 126089 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044601.label Connecting and filling vertices in path at fillseed 105205 Finding path........................................................................................................................................................................................................ done Filling 105205 nlabel 7560 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044701.label Connecting and filling vertices in path at fillseed 106484 Finding path...................................................................................................................................................................................... done Filling 106484 nlabel 3139 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044801.label Connecting and filling vertices in path at fillseed 106929 Finding path....................................................................................................................................................................................................................................................................................................................................................................... done Filling 106929 nlabel 5737 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044901.label Connecting and filling vertices in path at fillseed 107825 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 107825 nlabel 5802 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045001.label Connecting and filling vertices in path at fillseed 102820 Finding path............................................................................................................................................................................................................................................................................................................................................................................................... done Filling 102820 nlabel 9803 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045101.label Connecting and filling vertices in path at fillseed 105249 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 105249 nlabel 9716 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045201.label Connecting and filling vertices in path at fillseed 104982 Finding path................................................................................. done Filling 104982 nlabel 2095 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045301.label Connecting and filling vertices in path at fillseed 108508 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 108508 nlabel 9484 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045401.label Connecting and filling vertices in path at fillseed 105585 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 105585 nlabel 126912 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045501.label Connecting and filling vertices in path at fillseed 106662 Finding path.............................................................................................................................................................................................................. done Filling 106662 nlabel 8554 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045601.label Connecting and filling vertices in path at fillseed 105944 Finding path......................................................................................................................................................................................................................................................... done Filling 105944 nlabel 7715 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045701.label Connecting and filling vertices in path at fillseed 107735 Finding path.................................................................................................................................................................................................................................................................................................................................................... done Filling 107735 nlabel 5939 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045801.label Connecting and filling vertices in path at fillseed 99759 Finding path.................................................................................................................................................................................................................................... done Filling 99759 nlabel 4648 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045901.label Connecting and filling vertices in path at fillseed 102132 Finding path.................................................................................................................................................................................................................................................................................................................... done Filling 102132 nlabel 9382 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046001.label Connecting and filling vertices in path at fillseed 106145 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 106145 nlabel 8415 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046101.label Connecting and filling vertices in path at fillseed 104283 Finding path.......................................................................... done Filling 104283 nlabel 1763 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046201.label Connecting and filling vertices in path at fillseed 108515 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 108515 nlabel 10676 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046301.label Connecting and filling vertices in path at fillseed 103577 Finding path.............................................................................................................................................................................................................................................................................................................................. done Filling 103577 nlabel 5062 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046401.label Connecting and filling vertices in path at fillseed 106960 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 106960 nlabel 8487 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046501.label Connecting and filling vertices in path at fillseed 108220 Finding path........................................................................................................................ done Filling 108220 nlabel 5308 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046601.label Connecting and filling vertices in path at fillseed 109696 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 109696 nlabel 9477 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046701.label Connecting and filling vertices in path at fillseed 103532 Finding path.................................................................................................................................................................................................................. done Filling 103532 nlabel 4685 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046801.label Connecting and filling vertices in path at fillseed 107854 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 107854 nlabel 123825 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046901.label Connecting and filling vertices in path at fillseed 105954 Finding path.................................................................................................................................................................................................................................................................................................................................................................... done Filling 105954 nlabel 8669 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047001.label Connecting and filling vertices in path at fillseed 108947 Finding path................................................................................................................................................. done Filling 108947 nlabel 5268 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047101.label Connecting and filling vertices in path at fillseed 109210 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 109210 nlabel 8363 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047201.label Connecting and filling vertices in path at fillseed 107330 Finding path................................................................................................................................................................................................................................................................................................................................................................ done Filling 107330 nlabel 7622 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047301.label Connecting and filling vertices in path at fillseed 108463 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 108463 nlabel 9219 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047401.label Connecting and filling vertices in path at fillseed 111888 Finding path............................................................................................................................................ done Filling 111888 nlabel 5044 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047501.label Connecting and filling vertices in path at fillseed 112306 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 112306 nlabel 10286 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047601.label Connecting and filling vertices in path at fillseed 107868 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 107868 nlabel 125527 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047701.label Connecting and filling vertices in path at fillseed 108462 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 108462 nlabel 9543 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047801.label Connecting and filling vertices in path at fillseed 104983 Finding path........................................................................................................ done Filling 104983 nlabel 1332 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047901.label Connecting and filling vertices in path at fillseed 110319 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 110319 nlabel 9414 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048001.label Connecting and filling vertices in path at fillseed 129826 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 129826 nlabel 125283 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048101.label Connecting and filling vertices in path at fillseed 109012 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 109012 nlabel 10093 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048201.label Connecting and filling vertices in path at fillseed 107935 Finding path............................................................................................................... done Filling 107935 nlabel 2234 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048301.label Connecting and filling vertices in path at fillseed 103518 Finding path......................................................................................................................................................................................... done Filling 103518 nlabel 2643 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048401.label Connecting and filling vertices in path at fillseed 129825 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 129825 nlabel 125084 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048501.label Connecting and filling vertices in path at fillseed 108263 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 108263 nlabel 8513 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048601.label Connecting and filling vertices in path at fillseed 112013 Finding path............................................................................................................................................................. done Filling 112013 nlabel 5574 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048701.label Connecting and filling vertices in path at fillseed 104281 Finding path................................................................................................................................................................................................................................................ done Filling 104281 nlabel 1527 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048801.label Connecting and filling vertices in path at fillseed 130141 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 130141 nlabel 7484 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048901.label Connecting and filling vertices in path at fillseed 111496 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 111496 nlabel 9512 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049001.label Connecting and filling vertices in path at fillseed 104983 Finding path............................................................................................................................................................................... done Filling 104983 nlabel 1133 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049101.label Connecting and filling vertices in path at fillseed 113512 Finding path.......................................................................................................................................................................................................................................................................................................................................................... done Filling 113512 nlabel 8985 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049201.label Connecting and filling vertices in path at fillseed 130142 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 130142 nlabel 9760 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049301.label Connecting and filling vertices in path at fillseed 112188 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 112188 nlabel 9443 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049401.label Connecting and filling vertices in path at fillseed 108635 Finding path............................................................................................................ done Filling 108635 nlabel 1360 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049501.label Connecting and filling vertices in path at fillseed 104284 Finding path.................................................................................................................... done Filling 104284 nlabel 1831 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049601.label Connecting and filling vertices in path at fillseed 104999 Finding path........................................................................................................................................................... done Filling 104999 nlabel 3258 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049701.label Connecting and filling vertices in path at fillseed 114228 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 114228 nlabel 6486 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049801.label Connecting and filling vertices in path at fillseed 112043 Finding path............................................................................................................................................................................................................................................................................ done Filling 112043 nlabel 7122 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049901.label Connecting and filling vertices in path at fillseed 112497 Finding path......................................................................................................... done Filling 112497 nlabel 2635 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050001.label Connecting and filling vertices in path at fillseed 113557 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 113557 nlabel 9036 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050101.label Connecting and filling vertices in path at fillseed 113574 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 113574 nlabel 6417 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050201.label Connecting and filling vertices in path at fillseed 108045 Finding path.................................................................................................................................................................................................................................................................................................................................................................................... done Filling 108045 nlabel 8283 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050301.label Connecting and filling vertices in path at fillseed 109851 Finding path.............................................................................. done Filling 109851 nlabel 1556 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050401.label Connecting and filling vertices in path at fillseed 114808 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 114808 nlabel 10452 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050501.label Connecting and filling vertices in path at fillseed 106519 Finding path.................................................................................................................................................................. done Filling 106519 nlabel 3998 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050601.label Connecting and filling vertices in path at fillseed 108719 Finding path.......................................................................................................................................................................................................................................................................................................... done Filling 108719 nlabel 5597 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050701.label Connecting and filling vertices in path at fillseed 111319 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 111319 nlabel 8147 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050801.label Connecting and filling vertices in path at fillseed 113993 Finding path......................................................................................................................................................................................................................................................................................... done Filling 113993 nlabel 8796 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050901.label Connecting and filling vertices in path at fillseed 114876 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 114876 nlabel 9611 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051001.label Connecting and filling vertices in path at fillseed 108002 Finding path........................................................................................................................................................................................................................................... done Filling 108002 nlabel 4012 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051101.label Connecting and filling vertices in path at fillseed 111942 Finding path................................................................................................................................................................................................................................................................................................................................................................................... done Filling 111942 nlabel 9165 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051201.label Connecting and filling vertices in path at fillseed 115340 Finding path................................................................................................................................................................................................................................................................... done Filling 115340 nlabel 5253 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051301.label Connecting and filling vertices in path at fillseed 110432 Finding path............................................................................................................................................................... done Filling 110432 nlabel 2371 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051401.label Connecting and filling vertices in path at fillseed 115018 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 115018 nlabel 8561 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051501.label Connecting and filling vertices in path at fillseed 116178 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 116178 nlabel 7736 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051601.label Connecting and filling vertices in path at fillseed 114509 Finding path.............................................................................................................................................................. done Filling 114509 nlabel 5145 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051701.label Connecting and filling vertices in path at fillseed 110425 Finding path................................................................................................................................... done Filling 110425 nlabel 2518 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051801.label Connecting and filling vertices in path at fillseed 115605 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 115605 nlabel 9150 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051901.label Connecting and filling vertices in path at fillseed 116357 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 116357 nlabel 9553 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052001.label Connecting and filling vertices in path at fillseed 118397 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 118397 nlabel 10972 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052101.label Connecting and filling vertices in path at fillseed 111917 Finding path......................................................................................................................................................................................................................................... done Filling 111917 nlabel 5468 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052201.label Connecting and filling vertices in path at fillseed 109295 Finding path.............................................. done Filling 109295 nlabel 1124 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052301.label Connecting and filling vertices in path at fillseed 117667 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 117667 nlabel 10471 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052401.label Connecting and filling vertices in path at fillseed 116961 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 116961 nlabel 11775 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052501.label Connecting and filling vertices in path at fillseed 117627 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 117627 nlabel 11184 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052601.label Connecting and filling vertices in path at fillseed 113217 Finding path........................................................................................................................................................................................................................................................................................................................... done Filling 113217 nlabel 6809 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052701.label Connecting and filling vertices in path at fillseed 117570 Finding path....................................................................................................................................................................................................................................................................... done Filling 117570 nlabel 9088 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052801.label Connecting and filling vertices in path at fillseed 112509 Finding path................................................................................................................. done Filling 112509 nlabel 3933 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052901.label Connecting and filling vertices in path at fillseed 111917 Finding path.................................................................................................................................................................................................................................................................................................................... done Filling 111917 nlabel 5841 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053001.label Connecting and filling vertices in path at fillseed 118566 Finding path....................................................................................................................................................................... done Filling 118566 nlabel 2689 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053101.label Connecting and filling vertices in path at fillseed 111069 Finding path................................................................................................................................. done Filling 111069 nlabel 2502 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053201.label Connecting and filling vertices in path at fillseed 108020 Finding path............................................................................................................................................................................................................................................................................. done Filling 108020 nlabel 5457 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053301.label Connecting and filling vertices in path at fillseed 117454 Finding path................................................................................................................................................................................................................................................................................................................... done Filling 117454 nlabel 6645 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053401.label Connecting and filling vertices in path at fillseed 119593 Finding path......................................................................................................................................................................................................................................................................................................... done Filling 119593 nlabel 10431 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053501.label Connecting and filling vertices in path at fillseed 115100 Finding path................................................................................................................................................................................................. done Filling 115100 nlabel 5676 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053601.label Connecting and filling vertices in path at fillseed 117411 Finding path............................................................................................................................................................................................................................................................................................... done Filling 117411 nlabel 5025 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053701.label Connecting and filling vertices in path at fillseed 113093 Finding path............................................................................ done Filling 113093 nlabel 1520 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053801.label Connecting and filling vertices in path at fillseed 115100 Finding path...................................................................................................................................................................................................................................... done Filling 115100 nlabel 5896 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053901.label Connecting and filling vertices in path at fillseed 117426 Finding path............................................................................................................................................................................................................................................................................................................................................................................. done Filling 117426 nlabel 4325 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054001.label Connecting and filling vertices in path at fillseed 118309 Finding path.................................................................................................................................................................................................................... done Filling 118309 nlabel 8633 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054101.label Connecting and filling vertices in path at fillseed 116483 Finding path............................................................................................................................ done Filling 116483 nlabel 4083 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054201.label Connecting and filling vertices in path at fillseed 116715 Finding path.............................................................................................................................................................................................................................................. done Filling 116715 nlabel 3875 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054301.label Connecting and filling vertices in path at fillseed 115766 Finding path..................................................... done Filling 115766 nlabel 1110 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054401.label Connecting and filling vertices in path at fillseed 116494 Finding path.................................................................................................................................................................................... done Filling 116494 nlabel 4649 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054501.label Connecting and filling vertices in path at fillseed 118071 Finding path............................................................................................................................................................................................................................................................................................... done Filling 118071 nlabel 5238 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054601.label Connecting and filling vertices in path at fillseed 117884 Finding path.......................................................... done Filling 117884 nlabel 1266 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054701.label Connecting and filling vertices in path at fillseed 121617 Finding path...................................................................................................................................................................................................................................................................................... done Filling 121617 nlabel 8308 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054801.label Connecting and filling vertices in path at fillseed 119435 Finding path............................................................................................................................................................................................................................................................... done Filling 119435 nlabel 5054 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054901.label Connecting and filling vertices in path at fillseed 118553 Finding path.............................................................. done Filling 118553 nlabel 1068 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055001.label Connecting and filling vertices in path at fillseed 116492 Finding path............................................................................................................................................ done Filling 116492 nlabel 3894 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055101.label Connecting and filling vertices in path at fillseed 118708 Finding path.................................................................................................................................................................................................................................. done Filling 118708 nlabel 6474 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055201.label Connecting and filling vertices in path at fillseed 117884 Finding path.......................................................... done Filling 117884 nlabel 1199 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055301.label Connecting and filling vertices in path at fillseed 117892 Finding path....................................................................................................................... done Filling 117892 nlabel 3926 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055401.label Connecting and filling vertices in path at fillseed 119313 Finding path....................................................................................................................................................................................................................................................... done Filling 119313 nlabel 5406 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055501.label Connecting and filling vertices in path at fillseed 118553 Finding path.......................................................... done Filling 118553 nlabel 1124 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055601.label Connecting and filling vertices in path at fillseed 117886 Finding path.......................................................................................................................................................................................................................................................... done Filling 117886 nlabel 3128 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055701.label Connecting and filling vertices in path at fillseed 118668 Finding path................................................................................................................................................................ done Filling 118668 nlabel 5795 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055801.label Connecting and filling vertices in path at fillseed 123469 Finding path................................................................................................................................................................................................................................................... done Filling 123469 nlabel 3877 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055901.label Connecting and filling vertices in path at fillseed 117878 Finding path................................................................. done Filling 117878 nlabel 1305 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056001.label Connecting and filling vertices in path at fillseed 117187 Finding path.......................................................................................................................................................................... done Filling 117187 nlabel 4577 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056101.label Connecting and filling vertices in path at fillseed 119326 Finding path........................................................................................................................................................................................................................................................... done Filling 119326 nlabel 5851 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056201.label Connecting and filling vertices in path at fillseed 124035 Finding path............................................................................................................................................................................................................................................................................................................................................................................. done Filling 124035 nlabel 7610 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056301.label Connecting and filling vertices in path at fillseed 124703 Finding path.......................................................................................................................................................................................................................................................................................................................................... done Filling 124703 nlabel 9495 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056401.label Connecting and filling vertices in path at fillseed 123604 Finding path................................................................................................................................................................................................................................................ done Filling 123604 nlabel 8194 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056501.label Connecting and filling vertices in path at fillseed 122498 Finding path.................................................................................................................................................................................................................................................................................... done Filling 122498 nlabel 5639 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056601.label Connecting and filling vertices in path at fillseed 120742 Finding path.......................................................................................................................... done Filling 120742 nlabel 2318 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056701.label Connecting and filling vertices in path at fillseed 123080 Finding path.................................................................................................................................................................................................................................................................................................................................................. done Filling 123080 nlabel 7187 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056801.label Connecting and filling vertices in path at fillseed 124099 Finding path................................................................................................................................................................................................................................................................................................................................ done Filling 124099 nlabel 6181 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056901.label Connecting and filling vertices in path at fillseed 124482 Finding path............................................................................................................................................................................................................................................................................................................................................................. done Filling 124482 nlabel 6310 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057001.label Connecting and filling vertices in path at fillseed 118563 Finding path............................................................................................................................................ done Filling 118563 nlabel 3825 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057101.label Connecting and filling vertices in path at fillseed 121328 Finding path...................................................................................................................................................................................... done Filling 121328 nlabel 5796 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057201.label Connecting and filling vertices in path at fillseed 118553 Finding path..................................................................... done Filling 118553 nlabel 1255 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057301.label Connecting and filling vertices in path at fillseed 118553 Finding path............................................................ done Filling 118553 nlabel 1368 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057401.label Connecting and filling vertices in path at fillseed 124560 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 124560 nlabel 7930 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057501.label Connecting and filling vertices in path at fillseed 124379 Finding path......................................................................................................... done Filling 124379 nlabel 2509 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057601.label Connecting and filling vertices in path at fillseed 125670 Finding path.............................................................................................................................................................................................................................................................................................................................................................................. done Filling 125670 nlabel 6681 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057701.label Connecting and filling vertices in path at fillseed 121319 Finding path.................................................................................................................................................................... done Filling 121319 nlabel 5001 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057801.label Connecting and filling vertices in path at fillseed 125429 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 125429 nlabel 5723 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057901.label Connecting and filling vertices in path at fillseed 118554 Finding path......................................................... done Filling 118554 nlabel 1440 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058001.label Connecting and filling vertices in path at fillseed 121319 Finding path............................................................................................................................................................................ done Filling 121319 nlabel 4745 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058101.label Connecting and filling vertices in path at fillseed 124380 Finding path..................................................................................................................... done Filling 124380 nlabel 2055 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058201.label Connecting and filling vertices in path at fillseed 126774 Finding path............................................................................................................................................................................................................................................................................................................................................ done Filling 126774 nlabel 8153 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058301.label Connecting and filling vertices in path at fillseed 119810 Finding path...................................................................................................................................................................................................... done Filling 119810 nlabel 4933 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058401.label Connecting and filling vertices in path at fillseed 127095 Finding path....................................................................................................................................................................................................................................................................................................................................................................... done Filling 127095 nlabel 5767 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058501.label Connecting and filling vertices in path at fillseed 120783 Finding path.................................................................................................................................................................................. done Filling 120783 nlabel 4794 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058601.label Connecting and filling vertices in path at fillseed 126952 Finding path....................................................................................................................................................................................................... done Filling 126952 nlabel 3541 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058701.label Connecting and filling vertices in path at fillseed 127096 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 127096 nlabel 7183 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058801.label Connecting and filling vertices in path at fillseed 125977 Finding path.................................................................................................................................................................................................................................................................................................................................................................................. done Filling 125977 nlabel 7409 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058901.label Connecting and filling vertices in path at fillseed 126281 Finding path......................................................................................................... done Filling 126281 nlabel 3200 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059001.label Connecting and filling vertices in path at fillseed 127045 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 127045 nlabel 7957 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059101.label Connecting and filling vertices in path at fillseed 125502 Finding path........................................................................................................................................................................................................................................................................................................................................ done Filling 125502 nlabel 5196 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059201.label Connecting and filling vertices in path at fillseed 120743 Finding path............................................ done Filling 120743 nlabel 1239 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059301.label Connecting and filling vertices in path at fillseed 122894 Finding path............................................................................................................................................................... done Filling 122894 nlabel 4589 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059401.label Connecting and filling vertices in path at fillseed 127245 Finding path.................................................................................................................................................................................................. done Filling 127245 nlabel 3342 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059501.label Connecting and filling vertices in path at fillseed 127674 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 127674 nlabel 5455 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059601.label Connecting and filling vertices in path at fillseed 122896 Finding path.................................................................................................................................................................................................... done Filling 122896 nlabel 4122 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059701.label Connecting and filling vertices in path at fillseed 124860 Finding path..................................................................................... done Filling 124860 nlabel 1789 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059801.label Connecting and filling vertices in path at fillseed 123359 Finding path........................................................................................................................................................ done Filling 123359 nlabel 1688 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059901.label Connecting and filling vertices in path at fillseed 123398 Finding path......................................................................................................................................................................................................................................... done Filling 123398 nlabel 4099 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060001.label Connecting and filling vertices in path at fillseed 128289 Finding path......................................................................................................................................................................................................... done Filling 128289 nlabel 127776 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060101.label Connecting and filling vertices in path at fillseed 127644 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 127644 nlabel 6982 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060201.label Connecting and filling vertices in path at fillseed 124492 Finding path............................................................................................................................................................................................................. done Filling 124492 nlabel 4011 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060301.label Connecting and filling vertices in path at fillseed 128289 Finding path........................................................................................................................................................................................................................................................................................................... done Filling 128289 nlabel 128187 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060401.label Connecting and filling vertices in path at fillseed 125837 Finding path......................................................................................................................................................... done Filling 125837 nlabel 2948 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060501.label Connecting and filling vertices in path at fillseed 125501 Finding path........................................................................................................................................................................................................................ done Filling 125501 nlabel 3517 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060601.label Connecting and filling vertices in path at fillseed 128300 Finding path......................................................................................................................................................................................................................................... done Filling 128300 nlabel 128642 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060701.label Connecting and filling vertices in path at fillseed 124889 Finding path....................................................................................................................................................... done Filling 124889 nlabel 2987 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060801.label Connecting and filling vertices in path at fillseed 124988 Finding path............................................................................................................................................................... done Filling 124988 nlabel 3269 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060901.label Connecting and filling vertices in path at fillseed 125348 Finding path............................................................ done Filling 125348 nlabel 1269 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061001.label Connecting and filling vertices in path at fillseed 124889 Finding path............................................................................................................................................... done Filling 124889 nlabel 3196 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061101.label Connecting and filling vertices in path at fillseed 123398 Finding path.................................................................................................................................................................. done Filling 123398 nlabel 3192 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061201.label Connecting and filling vertices in path at fillseed 128402 Finding path............................................................................................................................................................................................................................................ done Filling 128402 nlabel 2275 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061301.label Connecting and filling vertices in path at fillseed 128265 Finding path................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 128265 nlabel 3492 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061401.label Connecting and filling vertices in path at fillseed 126983 Finding path.......................................................................................................................................................................... done Filling 126983 nlabel 2949 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061501.label Connecting and filling vertices in path at fillseed 125832 Finding path.............................................................. done Filling 125832 nlabel 1419 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061601.label Connecting and filling vertices in path at fillseed 127835 Finding path............................................................................................................................................... done Filling 127835 nlabel 3506 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061701.label Connecting and filling vertices in path at fillseed 128394 Finding path...................................................................................................................................................................................................................... done Filling 128394 nlabel 2480 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061801.label Connecting and filling vertices in path at fillseed 126266 Finding path......................................................................................................................................................................... done Filling 126266 nlabel 3176 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061901.label Connecting and filling vertices in path at fillseed 126984 Finding path............................................................................................................................................... done Filling 126984 nlabel 3024 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062001.label Connecting and filling vertices in path at fillseed 128398 Finding path................................................................................................................................................................................................................................................. done Filling 128398 nlabel 2231 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062101.label Connecting and filling vertices in path at fillseed 127552 Finding path.................................................................................................................................... done Filling 127552 nlabel 2871 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062201.label Connecting and filling vertices in path at fillseed 126636 Finding path................................................................................. done Filling 126636 nlabel 1825 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062301.label Connecting and filling vertices in path at fillseed 127857 Finding path....................................................................................................................................................................................................................................................................... done Filling 127857 nlabel 2330 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062401.label Connecting and filling vertices in path at fillseed 127526 Finding path....................................................................................... done Filling 127526 nlabel 1362 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062501.label Connecting and filling vertices in path at fillseed 126632 Finding path........................................................................................................................................................................ done Filling 126632 nlabel 2234 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062601.label Connecting and filling vertices in path at fillseed 127857 Finding path...................................................................................................................................................................................................................................................... done Filling 127857 nlabel 2317 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062701.label Connecting and filling vertices in path at fillseed 128261 Finding path................................................................................................................................................................................................................................................................................. done Filling 128261 nlabel 2185 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062801.label Connecting and filling vertices in path at fillseed 128263 Finding path.................................................................................................................................................................................................................................................................. done Filling 128263 nlabel 1888 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062901.label Connecting and filling vertices in path at fillseed 128073 Finding path......................................................................................................................................... done Filling 128073 nlabel 2477 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.063001.label ================= compute_lgi('lh.pial','lh.pial-outer-smoothed','/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc',100,25,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial'); exit ================= 2015-12-22 17:22:27.048 MATLAB_maci64[49769:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> loading datas ... FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.02 sec) FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) preparing outer mesh structure ... face 5000 / 126024 face 10000 / 126024 face 15000 / 126024 face 20000 / 126024 face 25000 / 126024 face 30000 / 126024 face 35000 / 126024 face 40000 / 126024 face 45000 / 126024 face 50000 / 126024 face 55000 / 126024 face 60000 / 126024 face 65000 / 126024 face 70000 / 126024 face 75000 / 126024 face 80000 / 126024 face 85000 / 126024 face 90000 / 126024 face 95000 / 126024 face 100000 / 126024 face 105000 / 126024 face 110000 / 126024 face 115000 / 126024 face 120000 / 126024 face 125000 / 126024 reading normals info ... mesh_outer = vertices: [63014x3 double] faces: [126024x3 double] facesOfVertex: [63014x1 struct] vertexNormal: [63014x3 double] preparing pial mesh structure ... face 5000 / 260506 face 10000 / 260506 face 15000 / 260506 face 20000 / 260506 face 25000 / 260506 face 30000 / 260506 face 35000 / 260506 face 40000 / 260506 face 45000 / 260506 face 50000 / 260506 face 55000 / 260506 face 60000 / 260506 face 65000 / 260506 face 70000 / 260506 face 75000 / 260506 face 80000 / 260506 face 85000 / 260506 face 90000 / 260506 face 95000 / 260506 face 100000 / 260506 face 105000 / 260506 face 110000 / 260506 face 115000 / 260506 face 120000 / 260506 face 125000 / 260506 face 130000 / 260506 face 135000 / 260506 face 140000 / 260506 face 145000 / 260506 face 150000 / 260506 face 155000 / 260506 face 160000 / 260506 face 165000 / 260506 face 170000 / 260506 face 175000 / 260506 face 180000 / 260506 face 185000 / 260506 face 190000 / 260506 face 195000 / 260506 face 200000 / 260506 face 205000 / 260506 face 210000 / 260506 face 215000 / 260506 face 220000 / 260506 face 225000 / 260506 face 230000 / 260506 face 235000 / 260506 face 240000 / 260506 face 245000 / 260506 face 250000 / 260506 face 255000 / 260506 face 260000 / 260506 mesh_total = vertices: [130255x3 double] faces: [260506x3 double] facesOfVertex: [130255x1 struct] ...searching for mesh edges...done (197.28 sec). loading outer area information... lGI for vertex number 1 of the outer mesh is 3.3866 ratio saved at 1 lGI for vertex number 101 of the outer mesh is 3.2159 lGI for vertex number 201 of the outer mesh is 4.5625 lGI for vertex number 301 of the outer mesh is 4.5781 lGI for vertex number 401 of the outer mesh is 3.1556 lGI for vertex number 501 of the outer mesh is 4.5673 lGI for vertex number 601 of the outer mesh is 2.9658 lGI for vertex number 701 of the outer mesh is 3.2775 lGI for vertex number 801 of the outer mesh is 4.565 lGI for vertex number 901 of the outer mesh is 2.8496 lGI for vertex number 1001 of the outer mesh is 2.8248 lGI for vertex number 1101 of the outer mesh is 4.5799 lGI for vertex number 1201 of the outer mesh is 4.5943 lGI for vertex number 1301 of the outer mesh is 2.7474 lGI for vertex number 1401 of the outer mesh is 3.0296 lGI for vertex number 1501 of the outer mesh is 4.8147 lGI for vertex number 1601 of the outer mesh is 2.0919 lGI for vertex number 1701 of the outer mesh is 3.0811 lGI for vertex number 1801 of the outer mesh is 2.4218 lGI for vertex number 1901 of the outer mesh is 1.8426 lGI for vertex number 2001 of the outer mesh is 2.6232 lGI for vertex number 2101 of the outer mesh is 4.9892 lGI for vertex number 2201 of the outer mesh is 4.8815 lGI for vertex number 2301 of the outer mesh is 2.6821 lGI for vertex number 2401 of the outer mesh is 2.8952 lGI for vertex number 2501 of the outer mesh is 2.7065 lGI for vertex number 2601 of the outer mesh is 1.6099 lGI for vertex number 2701 of the outer mesh is 2.2695 lGI for vertex number 2801 of the outer mesh is 2.674 lGI for vertex number 2901 of the outer mesh is 4.932 lGI for vertex number 3001 of the outer mesh is 4.7344 lGI for vertex number 3101 of the outer mesh is 1.5923 lGI for vertex number 3201 of the outer mesh is 2.5461 lGI for vertex number 3301 of the outer mesh is 3.0825 lGI for vertex number 3401 of the outer mesh is 2.6287 lGI for vertex number 3501 of the outer mesh is 1.4234 lGI for vertex number 3601 of the outer mesh is 2.074 lGI for vertex number 3701 of the outer mesh is 4.6502 lGI for vertex number 3801 of the outer mesh is 2.9743 lGI for vertex number 3901 of the outer mesh is 1.3417 lGI for vertex number 4001 of the outer mesh is 1.3442 lGI for vertex number 4101 of the outer mesh is 1.6962 lGI for vertex number 4201 of the outer mesh is 2.6563 lGI for vertex number 4301 of the outer mesh is 2.9346 lGI for vertex number 4401 of the outer mesh is 4.3436 lGI for vertex number 4501 of the outer mesh is 1.3347 lGI for vertex number 4601 of the outer mesh is 2.5531 lGI for vertex number 4701 of the outer mesh is 2.8172 lGI for vertex number 4801 of the outer mesh is 3.4624 lGI for vertex number 4901 of the outer mesh is 2.8511 lGI for vertex number 5001 of the outer mesh is 1.3545 lGI for vertex number 5101 of the outer mesh is 2.4487 lGI for vertex number 5201 of the outer mesh is 3.4321 lGI for vertex number 5301 of the outer mesh is 2.0361 lGI for vertex number 5401 of the outer mesh is 1.2793 lGI for vertex number 5501 of the outer mesh is 2.2321 lGI for vertex number 5601 of the outer mesh is 2.8796 lGI for vertex number 5701 of the outer mesh is 1.3566 lGI for vertex number 5801 of the outer mesh is 4.2066 lGI for vertex number 5901 of the outer mesh is 1.3597 lGI for vertex number 6001 of the outer mesh is 3.2273 lGI for vertex number 6101 of the outer mesh is 2.8307 lGI for vertex number 6201 of the outer mesh is 2.8034 lGI for vertex number 6301 of the outer mesh is 5.0836 lGI for vertex number 6401 of the outer mesh is 2.3822 lGI for vertex number 6501 of the outer mesh is 3.1138 lGI for vertex number 6601 of the outer mesh is 1.8083 lGI for vertex number 6701 of the outer mesh is 4.6152 lGI for vertex number 6801 of the outer mesh is 1.6699 lGI for vertex number 6901 of the outer mesh is 5.1179 lGI for vertex number 7001 of the outer mesh is 2.6283 lGI for vertex number 7101 of the outer mesh is 2.8073 lGI for vertex number 7201 of the outer mesh is 4.9706 lGI for vertex number 7301 of the outer mesh is 5.4653 lGI for vertex number 7401 of the outer mesh is 2.7869 lGI for vertex number 7501 of the outer mesh is 2.3321 lGI for vertex number 7601 of the outer mesh is 1.2167 lGI for vertex number 7701 of the outer mesh is 5.5927 lGI for vertex number 7801 of the outer mesh is 2.7729 lGI for vertex number 7901 of the outer mesh is 2.7451 lGI for vertex number 8001 of the outer mesh is 5.0377 lGI for vertex number 8101 of the outer mesh is 5.3001 lGI for vertex number 8201 of the outer mesh is 3.2804 lGI for vertex number 8301 of the outer mesh is 2.8192 lGI for vertex number 8401 of the outer mesh is 5.32 lGI for vertex number 8501 of the outer mesh is 4.1424 lGI for vertex number 8601 of the outer mesh is 2.4848 lGI for vertex number 8701 of the outer mesh is 2.1781 lGI for vertex number 8801 of the outer mesh is 1.2069 lGI for vertex number 8901 of the outer mesh is 1.9851 lGI for vertex number 9001 of the outer mesh is 2.6749 lGI for vertex number 9101 of the outer mesh is 2.6615 lGI for vertex number 9201 of the outer mesh is 1.1263 lGI for vertex number 9301 of the outer mesh is 4.8765 lGI for vertex number 9401 of the outer mesh is 2.2413 lGI for vertex number 9501 of the outer mesh is 2.6829 lGI for vertex number 9601 of the outer mesh is 1.0972 lGI for vertex number 9701 of the outer mesh is 1.1199 lGI for vertex number 9801 of the outer mesh is 2.0021 ... remeasuring lGI value for vertex iV = 9901. It may take a few minutes. WARNING -- Problem for vertex iV = 9901, lGI value is aberrantly high (lGI=32.2484)... ...lGI computation will be stopped. This may be caused by topological defects, check mris_euler_number on the pial surface. ERROR: compute_lgi did not create output file '/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial_lgi.asc'! Darwin MacBook-Pro-di-Marco.local 13.3.0 Darwin Kernel Version 13.3.0: Tue Jun 3 21:27:35 PDT 2014; root:xnu-2422.110.17~1/RELEASE_X86_64 x86_64 recon-all -s T40_OM_Post exited with ERRORS at Tue Dec 22 17:32:54 EET 2015 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting \n\n New invocation of recon-all \n\n Fri Jan 22 10:00:17 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post /Applications/freesurfer/bin/recon-all -autorecon2-wm -randomness -s T40_OM_Post subjid T40_OM_Post setenv SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Actual FREESURFER_HOME /Applications/freesurfer build-stamp.txt: freesurfer-Darwin-lion-stable-pub-v5.3.0 Darwin MacBook-Pro-di-Marco.local 13.3.0 Darwin Kernel Version 13.3.0: Tue Jun 3 21:27:35 PDT 2014; root:xnu-2422.110.17~1/RELEASE_X86_64 x86_64 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 709 PhysMem: 5836M used (1327M wired), 79M unused. ######################################## program versions used $Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 nicks Exp $ $Id: mri_motion_correct.fsl,v 1.14 2011/03/02 20:16:39 nicks Exp $ mri_convert -all-info ProgramName: mri_convert ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 FLIRT version 5.5 $Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks Exp $ mri_convert --version stable5 ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 Program nu_correct, built from: Package MNI N3, version 1.10, compiled by nicks@aspasia.local (i686-apple-darwin10.2.0) on 2010-02-26 at 14:19:30 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:20-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:20-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_normalize.c,v 1.73.2.1 2012/10/17 19:11:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_watershed.cpp,v 1.96.2.1 2011/11/08 22:18:44 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_segment.c,v 1.40 2011/03/02 00:04:24 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_label2label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_label2label.c,v 1.40.2.2 2013/04/02 16:26:15 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:22-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_em_register.c,v 1.84.2.3 2013/02/09 00:49:26 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:22-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_normalize.c,v 1.52.2.2 2012/10/17 19:11:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:22-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_register.c,v 1.78.2.3 2013/02/09 00:42:20 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:22-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_label.c,v 1.96.2.1 2012/08/28 22:11:20 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:22-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_pretess.c,v 1.20 2011/03/02 00:04:23 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:23-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_fill.c,v 1.118 2011/03/16 21:23:49 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:23-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_concatenate_lta ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:23-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_concatenate_lta.c,v 1.10 2011/03/16 21:23:48 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:23-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:24-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_smooth.c,v 1.28 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:24-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_inflate.c,v 1.43 2011/03/02 00:04:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:24-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:24-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:25-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:25-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:25-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:25-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_euler_number.c,v 1.8.2.2 2013/01/14 22:40:07 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:26-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:26-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:26-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_volmask.cpp,v 1.25 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:26-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_anatomical_stats.c,v 1.72 2011/03/02 00:04:26 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:26-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mrisp_paint.c,v 1.11 2011/03/02 00:04:35 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:27-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_curvature_stats.c,v 1.64 2011/03/02 00:04:30 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:27-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_calc.c,v 1.37.2.8 2013/01/28 17:05:17 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ ProgramName: mri_robust_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:27-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:27-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:28-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:28-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_or.c,v 1.3 2011/03/02 00:04:13 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:28-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-08:00:28-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ####################################### GCADIR /Applications/freesurfer/average GCA RB_all_2008-03-26.gca GCASkull RB_all_withskull_2008-03-26.gca AvgCurvTif average.curvature.filled.buckner40.tif GCSDIR /Applications/freesurfer/average GCS curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ####################################### INFO: current FREESURFER_HOME does not match that of previous processing. Current: /Applications/freesurfer Previous: /cdrom/Marco/freesurfer #-------------------------------------------- #@# Intensity Normalization2 Fri Jan 22 10:00:30 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri \n mri_normalize -aseg aseg.mgz -mask brainmask.mgz norm.mgz brain.mgz \n using segmentation for initial intensity normalization using MR volume brainmask.mgz to mask input volume... reading from norm.mgz... Reading aseg aseg.mgz normalizing image... processing with aseg removing outliers in the aseg WM... 1830 control points removed Building bias image building Voronoi diagram... performing soap bubble smoothing, sigma = 0... Smoothing with sigma 8 Applying bias correction building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 111 white matter peak found at 109 gm peak at 87 (87), valley at 60 (60) csf peak at 28, setting threshold to 67 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 111 white matter peak found at 109 gm peak at 84 (84), valley at 59 (59) csf peak at 28, setting threshold to 65 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to brain.mgz 3D bias adjustment took 3 minutes and 8 seconds. #-------------------------------------------- #@# Mask BFS Fri Jan 22 10:03:41 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri \n mri_mask -T 5 brain.mgz brainmask.mgz brain.finalsurfs.mgz \n threshold mask volume at 5 DoAbs = 0 Found 1483746 voxels in mask (pct= 8.84) Writing masked volume to brain.finalsurfs.mgz...done. #-------------------------------------------- #@# WM Segmentation Fri Jan 22 10:03:44 EET 2016 \n mri_binarize --i wm.mgz --min 255 --max 255 --o wm255.mgz --count wm255.txt \n $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri cmdline mri_binarize --i wm.mgz --min 255 --max 255 --o wm255.mgz --count wm255.txt sysname Darwin hostname MacBook-Pro-di-Marco.local machine x86_64 user marco input wm.mgz frame 0 nErode3d 0 nErode2d 0 output wm255.mgz Binarizing based on threshold min 255 max 255 binval 1 binvalnot 0 Found 0 values in range Counting number of voxels Found 0 voxels in final mask mri_binarize done \n mri_binarize --i wm.mgz --min 1 --max 1 --o wm1.mgz --count wm1.txt \n $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri cmdline mri_binarize --i wm.mgz --min 1 --max 1 --o wm1.mgz --count wm1.txt sysname Darwin hostname MacBook-Pro-di-Marco.local machine x86_64 user marco input wm.mgz frame 0 nErode3d 0 nErode2d 0 output wm1.mgz Binarizing based on threshold min 1 max 1 binval 1 binvalnot 0 Found 0 values in range Counting number of voxels Found 0 voxels in final mask mri_binarize done \n rm wm1.mgz wm255.mgz \n \n mri_segment -keep brain.mgz wm.seg.mgz \n preserving editing changes in output volume... doing initial intensity segmentation... using local statistics to label ambiguous voxels... computing class statistics for intensity windows... WM (104.0): 104.1 +- 5.6 [80.0 --> 125.0] GM (75.0) : 72.4 +- 14.5 [30.0 --> 96.0] setting bottom of white matter range to 86.9 setting top of gray matter range to 101.4 doing initial intensity segmentation... using local statistics to label ambiguous voxels... using local geometry to label remaining ambiguous voxels... reclassifying voxels using Gaussian border classifier... removing voxels with positive offset direction... smoothing T1 volume with sigma = 0.250 removing 1-dimensional structures... 8813 sparsely connected voxels removed... thickening thin strands.... 20 segments, 4252 filled 2377 bright non-wm voxels segmented. 5348 diagonally connected voxels added... white matter segmentation took 1.9 minutes writing output to wm.seg.mgz... \n mri_edit_wm_with_aseg -keep-in wm.seg.mgz brain.mgz aseg.mgz wm.asegedit.mgz \n preserving editing changes in input volume... auto filling took 0.62 minutes reading wm segmentation from wm.seg.mgz... 178 voxels added to wm to prevent paths from MTL structures to cortex 3845 additional wm voxels added 0 additional wm voxels added SEG EDIT: 78923 voxels turned on, 27036 voxels turned off. propagating editing to output volume from wm.seg.mgz 115,126,128 old 0 new 0 115,126,128 old 0 new 0 writing edited volume to wm.asegedit.mgz.... \n mri_pretess -keep wm.asegedit.mgz wm norm.mgz wm.mgz \n Iteration Number : 1 pass 1 (xy+): 28 found - 28 modified | TOTAL: 28 pass 2 (xy+): 0 found - 28 modified | TOTAL: 28 pass 1 (xy-): 27 found - 27 modified | TOTAL: 55 pass 2 (xy-): 0 found - 27 modified | TOTAL: 55 pass 1 (yz+): 37 found - 37 modified | TOTAL: 92 pass 2 (yz+): 0 found - 37 modified | TOTAL: 92 pass 1 (yz-): 28 found - 28 modified | TOTAL: 120 pass 2 (yz-): 0 found - 28 modified | TOTAL: 120 pass 1 (xz+): 20 found - 20 modified | TOTAL: 140 pass 2 (xz+): 0 found - 20 modified | TOTAL: 140 pass 1 (xz-): 32 found - 32 modified | TOTAL: 172 pass 2 (xz-): 0 found - 32 modified | TOTAL: 172 Iteration Number : 1 pass 1 (+++): 31 found - 31 modified | TOTAL: 31 pass 2 (+++): 0 found - 31 modified | TOTAL: 31 pass 1 (+++): 52 found - 52 modified | TOTAL: 83 pass 2 (+++): 0 found - 52 modified | TOTAL: 83 pass 1 (+++): 30 found - 30 modified | TOTAL: 113 pass 2 (+++): 0 found - 30 modified | TOTAL: 113 pass 1 (+++): 19 found - 19 modified | TOTAL: 132 pass 2 (+++): 0 found - 19 modified | TOTAL: 132 Iteration Number : 1 pass 1 (++): 102 found - 102 modified | TOTAL: 102 pass 2 (++): 0 found - 102 modified | TOTAL: 102 pass 1 (+-): 99 found - 99 modified | TOTAL: 201 pass 2 (+-): 0 found - 99 modified | TOTAL: 201 pass 1 (--): 100 found - 100 modified | TOTAL: 301 pass 2 (--): 0 found - 100 modified | TOTAL: 301 pass 1 (-+): 115 found - 115 modified | TOTAL: 416 pass 2 (-+): 0 found - 115 modified | TOTAL: 416 Iteration Number : 2 pass 1 (xy+): 18 found - 18 modified | TOTAL: 18 pass 2 (xy+): 0 found - 18 modified | TOTAL: 18 pass 1 (xy-): 15 found - 15 modified | TOTAL: 33 pass 2 (xy-): 0 found - 15 modified | TOTAL: 33 pass 1 (yz+): 7 found - 7 modified | TOTAL: 40 pass 2 (yz+): 0 found - 7 modified | TOTAL: 40 pass 1 (yz-): 12 found - 12 modified | TOTAL: 52 pass 2 (yz-): 0 found - 12 modified | TOTAL: 52 pass 1 (xz+): 12 found - 12 modified | TOTAL: 64 pass 2 (xz+): 0 found - 12 modified | TOTAL: 64 pass 1 (xz-): 12 found - 12 modified | TOTAL: 76 pass 2 (xz-): 0 found - 12 modified | TOTAL: 76 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 2 found - 2 modified | TOTAL: 2 pass 2 (+++): 0 found - 2 modified | TOTAL: 2 pass 1 (+++): 2 found - 2 modified | TOTAL: 4 pass 2 (+++): 0 found - 2 modified | TOTAL: 4 pass 1 (+++): 0 found - 0 modified | TOTAL: 4 Iteration Number : 2 pass 1 (++): 5 found - 5 modified | TOTAL: 5 pass 2 (++): 0 found - 5 modified | TOTAL: 5 pass 1 (+-): 5 found - 5 modified | TOTAL: 10 pass 2 (+-): 0 found - 5 modified | TOTAL: 10 pass 1 (--): 6 found - 6 modified | TOTAL: 16 pass 2 (--): 0 found - 6 modified | TOTAL: 16 pass 1 (-+): 2 found - 2 modified | TOTAL: 18 pass 2 (-+): 0 found - 2 modified | TOTAL: 18 Iteration Number : 3 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 1 found - 1 modified | TOTAL: 1 pass 2 (yz+): 0 found - 1 modified | TOTAL: 1 pass 1 (yz-): 2 found - 2 modified | TOTAL: 3 pass 2 (yz-): 0 found - 2 modified | TOTAL: 3 pass 1 (xz+): 1 found - 1 modified | TOTAL: 4 pass 2 (xz+): 0 found - 1 modified | TOTAL: 4 pass 1 (xz-): 0 found - 0 modified | TOTAL: 4 Iteration Number : 3 pass 1 (+++): 2 found - 2 modified | TOTAL: 2 pass 2 (+++): 0 found - 2 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 Iteration Number : 3 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 1 found - 1 modified | TOTAL: 1 pass 2 (+-): 0 found - 1 modified | TOTAL: 1 pass 1 (--): 2 found - 2 modified | TOTAL: 3 pass 2 (--): 0 found - 2 modified | TOTAL: 3 pass 1 (-+): 0 found - 0 modified | TOTAL: 3 Iteration Number : 4 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 2 found - 2 modified | TOTAL: 2 pass 2 (yz+): 0 found - 2 modified | TOTAL: 2 pass 1 (yz-): 0 found - 0 modified | TOTAL: 2 pass 1 (xz+): 1 found - 1 modified | TOTAL: 3 pass 2 (xz+): 0 found - 1 modified | TOTAL: 3 pass 1 (xz-): 0 found - 0 modified | TOTAL: 3 Iteration Number : 4 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 1 found - 1 modified | TOTAL: 1 pass 2 (+-): 0 found - 1 modified | TOTAL: 1 pass 1 (--): 0 found - 0 modified | TOTAL: 1 pass 1 (-+): 0 found - 0 modified | TOTAL: 1 Iteration Number : 5 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 5 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 5 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 831 (out of 560568: 0.148242) keeping edits binarizing input wm segmentation... Ambiguous edge configurations... Searching for edits to keep ... kept 0 WM ON voxels kept 0 WM OFF voxels mri_pretess done #-------------------------------------------- #@# Fill Fri Jan 22 10:06:31 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri \n mri_fill -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.auto_noCCseg.mgz wm.mgz filled.mgz \n logging cutting plane coordinates to ../scripts/ponscc.cut.log... INFO: Using transforms/talairach.lta and its offset for Talairach volume ... using segmentation aseg.auto_noCCseg.mgz... reading input volume...done. searching for cutting planes...voxel to talairach voxel transform 1.062 -0.055 -0.031 2.299; 0.061 1.026 0.310 -60.856; 0.017 -0.319 1.044 32.803; 0.000 0.000 0.000 1.000; voxel to talairach voxel transform 1.062 -0.055 -0.031 2.299; 0.061 1.026 0.310 -60.856; 0.017 -0.319 1.044 32.803; 0.000 0.000 0.000 1.000; reading segmented volume aseg.auto_noCCseg.mgz... Looking for area (min, max) = (350, 1400) area[0] = 1393 (min = 350, max = 1400), aspect = 0.50 (min = 0.10, max = 0.75) no need to search using seed (124, 114, 88), TAL = (4.0, -40.0, 14.0) talairach voxel to voxel transform 0.938 0.054 0.012 0.727; -0.047 0.889 -0.266 62.943; -0.030 0.271 0.877 -12.202; 0.000 0.000 0.000 1.000; segmentation indicates cc at (124, 114, 88) --> (4.0, -40.0, 14.0) done. writing output to filled.mgz... filling took 0.7 minutes talairach cc position changed to (4.00, -40.00, 14.00) Erasing brainstem...done. seed_search_size = 9, min_neighbors = 5 search rh wm seed point around talairach space:(22.00, -40.00, 14.00) SRC: (107.31, 135.96, 92.69) search lh wm seed point around talairach space (-14.00, -40.00, 14.00), SRC: (141.08, 134.27, 91.62) compute mri_fill using aseg Erasing Brain Stem and Cerebellum ... Define left and right masks using aseg: Building Voronoi diagram ... Using the Voronoi diagram to separate WM into two hemispheres ... Find the largest connected component for each hemisphere ... #-------------------------------------------- #@# Tessellate lh Fri Jan 22 10:07:13 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mri_pretess ../mri/filled.mgz 255 ../mri/norm.mgz ../mri/filled-pretess255.mgz \n Iteration Number : 1 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 1 found - 1 modified | TOTAL: 1 pass 2 (yz+): 0 found - 1 modified | TOTAL: 1 pass 1 (yz-): 9 found - 9 modified | TOTAL: 10 pass 2 (yz-): 0 found - 9 modified | TOTAL: 10 pass 1 (xz+): 1 found - 1 modified | TOTAL: 11 pass 2 (xz+): 0 found - 1 modified | TOTAL: 11 pass 1 (xz-): 0 found - 0 modified | TOTAL: 11 Iteration Number : 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 1 pass 1 (++): 1 found - 1 modified | TOTAL: 1 pass 2 (++): 0 found - 1 modified | TOTAL: 1 pass 1 (+-): 0 found - 0 modified | TOTAL: 1 pass 1 (--): 1 found - 1 modified | TOTAL: 2 pass 2 (--): 0 found - 1 modified | TOTAL: 2 pass 1 (-+): 0 found - 0 modified | TOTAL: 2 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 13 (out of 274693: 0.004733) Ambiguous edge configurations... mri_pretess done \n mri_tessellate ../mri/filled-pretess255.mgz 255 ../surf/lh.orig.nofix \n $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ slice 40: 249 vertices, 300 faces slice 50: 5461 vertices, 5718 faces slice 60: 15530 vertices, 15933 faces slice 70: 27835 vertices, 28270 faces slice 80: 39199 vertices, 39539 faces slice 90: 50221 vertices, 50638 faces slice 100: 61500 vertices, 61927 faces slice 110: 72581 vertices, 72987 faces slice 120: 83614 vertices, 84069 faces slice 130: 94425 vertices, 94869 faces slice 140: 104674 vertices, 105111 faces slice 150: 113661 vertices, 114058 faces slice 160: 120908 vertices, 121299 faces slice 170: 127464 vertices, 127779 faces slice 180: 132475 vertices, 132751 faces slice 190: 134702 vertices, 134830 faces slice 200: 134702 vertices, 134830 faces slice 210: 134702 vertices, 134830 faces slice 220: 134702 vertices, 134830 faces slice 230: 134702 vertices, 134830 faces slice 240: 134702 vertices, 134830 faces slice 250: 134702 vertices, 134830 faces using the conformed surface RAS to save vertex points... writing ../surf/lh.orig.nofix using vox2ras matrix: -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; \n rm -f ../mri/filled-pretess255.mgz \n \n mris_extract_main_component ../surf/lh.orig.nofix ../surf/lh.orig.nofix \n counting number of connected components... 134702 voxel in cpt #1: X=-128 [v=134702,e=404490,f=269660] located at (-24.011240, -21.923883, 2.173910) For the whole surface: X=-128 [v=134702,e=404490,f=269660] One single component has been found nothing to do done #-------------------------------------------- #@# Smooth1 lh Fri Jan 22 10:07:21 EET 2016 \n mris_smooth -nw ../surf/lh.orig.nofix ../surf/lh.smoothwm.nofix \n /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation1 lh Fri Jan 22 10:07:27 EET 2016 \n mris_inflate -no-save-sulc ../surf/lh.smoothwm.nofix ../surf/lh.inflated.nofix \n /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts avg radius = 46.5 mm, total surface area = 69521 mm^2 writing inflated surface to ../surf/lh.inflated.nofix inflation took 0.4 minutes Not saving sulc step 000: RMS=0.110 (target=0.015) step 005: RMS=0.084 (target=0.015) step 010: RMS=0.067 (target=0.015) step 015: RMS=0.059 (target=0.015) step 020: RMS=0.054 (target=0.015) step 025: RMS=0.051 (target=0.015) step 030: RMS=0.048 (target=0.015) step 035: RMS=0.045 (target=0.015) step 040: RMS=0.045 (target=0.015) step 045: RMS=0.044 (target=0.015) step 050: RMS=0.043 (target=0.015) step 055: RMS=0.043 (target=0.015) step 060: RMS=0.042 (target=0.015) inflation complete. Not saving sulc #-------------------------------------------- #@# QSphere lh Fri Jan 22 10:07:51 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_sphere -q ../surf/lh.inflated.nofix ../surf/lh.qsphere.nofix \n doing quick spherical unfolding. $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... vertex spacing 1.00 +- 0.59 (0.00-->7.84) (max @ vno 91073 --> 91084) face area 0.03 +- 0.04 (-0.17-->0.92) writing spherical brain to ../surf/lh.qsphere.nofix spherical transformation took 0.05 hours scaling brain by 0.346... inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=174.816, avgs=0 005/300: dt: 0.9000, rms radial error=174.556, avgs=0 010/300: dt: 0.9000, rms radial error=173.998, avgs=0 015/300: dt: 0.9000, rms radial error=173.264, avgs=0 020/300: dt: 0.9000, rms radial error=172.428, avgs=0 025/300: dt: 0.9000, rms radial error=171.534, avgs=0 030/300: dt: 0.9000, rms radial error=170.609, avgs=0 035/300: dt: 0.9000, rms radial error=169.671, avgs=0 040/300: dt: 0.9000, rms radial error=168.733, avgs=0 045/300: dt: 0.9000, rms radial error=167.792, avgs=0 050/300: dt: 0.9000, rms radial error=166.853, avgs=0 055/300: dt: 0.9000, rms radial error=165.918, avgs=0 060/300: dt: 0.9000, rms radial error=164.990, avgs=0 065/300: dt: 0.9000, rms radial error=164.066, avgs=0 070/300: dt: 0.9000, rms radial error=163.148, avgs=0 075/300: dt: 0.9000, rms radial error=162.235, avgs=0 080/300: dt: 0.9000, rms radial error=161.327, avgs=0 085/300: dt: 0.9000, rms radial error=160.424, avgs=0 090/300: dt: 0.9000, rms radial error=159.525, avgs=0 095/300: dt: 0.9000, rms radial error=158.631, avgs=0 100/300: dt: 0.9000, rms radial error=157.742, avgs=0 105/300: dt: 0.9000, rms radial error=156.857, avgs=0 110/300: dt: 0.9000, rms radial error=155.977, avgs=0 115/300: dt: 0.9000, rms radial error=155.101, avgs=0 120/300: dt: 0.9000, rms radial error=154.230, avgs=0 125/300: dt: 0.9000, rms radial error=153.364, avgs=0 130/300: dt: 0.9000, rms radial error=152.503, avgs=0 135/300: dt: 0.9000, rms radial error=151.646, avgs=0 140/300: dt: 0.9000, rms radial error=150.795, avgs=0 145/300: dt: 0.9000, rms radial error=149.948, avgs=0 150/300: dt: 0.9000, rms radial error=149.105, avgs=0 155/300: dt: 0.9000, rms radial error=148.268, avgs=0 160/300: dt: 0.9000, rms radial error=147.434, avgs=0 165/300: dt: 0.9000, rms radial error=146.605, avgs=0 170/300: dt: 0.9000, rms radial error=145.781, avgs=0 175/300: dt: 0.9000, rms radial error=144.962, avgs=0 180/300: dt: 0.9000, rms radial error=144.146, avgs=0 185/300: dt: 0.9000, rms radial error=143.336, avgs=0 190/300: dt: 0.9000, rms radial error=142.530, avgs=0 195/300: dt: 0.9000, rms radial error=141.728, avgs=0 200/300: dt: 0.9000, rms radial error=140.930, avgs=0 205/300: dt: 0.9000, rms radial error=140.137, avgs=0 210/300: dt: 0.9000, rms radial error=139.348, avgs=0 215/300: dt: 0.9000, rms radial error=138.564, avgs=0 220/300: dt: 0.9000, rms radial error=137.784, avgs=0 225/300: dt: 0.9000, rms radial error=137.008, avgs=0 230/300: dt: 0.9000, rms radial error=136.237, avgs=0 235/300: dt: 0.9000, rms radial error=135.469, avgs=0 240/300: dt: 0.9000, rms radial error=134.706, avgs=0 245/300: dt: 0.9000, rms radial error=133.948, avgs=0 250/300: dt: 0.9000, rms radial error=133.193, avgs=0 255/300: dt: 0.9000, rms radial error=132.443, avgs=0 260/300: dt: 0.9000, rms radial error=131.697, avgs=0 265/300: dt: 0.9000, rms radial error=130.955, avgs=0 270/300: dt: 0.9000, rms radial error=130.217, avgs=0 275/300: dt: 0.9000, rms radial error=129.484, avgs=0 280/300: dt: 0.9000, rms radial error=128.754, avgs=0 285/300: dt: 0.9000, rms radial error=128.028, avgs=0 290/300: dt: 0.9000, rms radial error=127.307, avgs=0 295/300: dt: 0.9000, rms radial error=126.589, avgs=0 300/300: dt: 0.9000, rms radial error=125.876, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 15290.28 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00008 epoch 2 (K=40.0), pass 1, starting sse = 2459.67 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00020 epoch 3 (K=160.0), pass 1, starting sse = 246.47 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.02/10 = 0.00169 epoch 4 (K=640.0), pass 1, starting sse = 24.04 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.05/11 = 0.00489 final distance error %100000.00 #-------------------------------------------- #@# Fix Topology lh Fri Jan 22 10:10:36 EET 2016 \n cp ../surf/lh.orig.nofix ../surf/lh.orig \n \n cp ../surf/lh.inflated.nofix ../surf/lh.inflated \n /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_fix_topology -mgz -sphere qsphere.nofix -ga T40_OM_Post lh \n reading spherical homeomorphism from 'qsphere.nofix' using genetic algorithm with optimized parameters ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ before topology correction, eno=-128 (nv=134702, nf=269660, ne=404490, g=65) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 8 iterations marking ambiguous vertices... 10351 ambiguous faces found in tessellation segmenting defects... 69 defects found, arbitrating ambiguous regions... analyzing neighboring defects... -merging segment 33 into 27 -merging segment 42 into 35 -merging segment 51 into 46 -merging segment 56 into 57 -merging segment 58 into 57 64 defects to be corrected 0 vertices coincident reading input surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Computing Initial Surface Statistics -face loglikelihood: -8.7890 (-4.3945) -vertex loglikelihood: -6.0045 (-3.0023) -normal dot loglikelihood: -3.6382 (-3.6382) -quad curv loglikelihood: -6.2705 (-3.1353) Total Loglikelihood : -24.7023 CORRECTING DEFECT 0 (vertices=107, convex hull=154) After retessellation of defect 0, euler #=-61 (128481,383177,254635) : difference with theory (-61) = 0 CORRECTING DEFECT 1 (vertices=127, convex hull=173) After retessellation of defect 1, euler #=-60 (128554,383478,254864) : difference with theory (-60) = 0 CORRECTING DEFECT 2 (vertices=45, convex hull=87) After retessellation of defect 2, euler #=-59 (128577,383587,254951) : difference with theory (-59) = 0 CORRECTING DEFECT 3 (vertices=53, convex hull=78) After retessellation of defect 3, euler #=-58 (128602,383695,255035) : difference with theory (-58) = 0 CORRECTING DEFECT 4 (vertices=22, convex hull=21) After retessellation of defect 4, euler #=-57 (128602,383702,255043) : difference with theory (-57) = 0 CORRECTING DEFECT 5 (vertices=43, convex hull=98) After retessellation of defect 5, euler #=-56 (128632,383832,255144) : difference with theory (-56) = 0 CORRECTING DEFECT 6 (vertices=26, convex hull=69) After retessellation of defect 6, euler #=-55 (128646,383902,255201) : difference with theory (-55) = 0 CORRECTING DEFECT 7 (vertices=66, convex hull=78) After retessellation of defect 7, euler #=-54 (128662,383986,255270) : difference with theory (-54) = 0 CORRECTING DEFECT 8 (vertices=71, convex hull=79) After retessellation of defect 8, euler #=-53 (128687,384092,255352) : difference with theory (-53) = 0 CORRECTING DEFECT 9 (vertices=26, convex hull=56) After retessellation of defect 9, euler #=-52 (128701,384155,255402) : difference with theory (-52) = 0 CORRECTING DEFECT 10 (vertices=150, convex hull=186) After retessellation of defect 10, euler #=-51 (128795,384525,255679) : difference with theory (-51) = 0 CORRECTING DEFECT 11 (vertices=33, convex hull=100) After retessellation of defect 11, euler #=-50 (128818,384636,255768) : difference with theory (-50) = 0 CORRECTING DEFECT 12 (vertices=130, convex hull=130) After retessellation of defect 12, euler #=-49 (128865,384838,255924) : difference with theory (-49) = 0 CORRECTING DEFECT 13 (vertices=34, convex hull=62) After retessellation of defect 13, euler #=-48 (128888,384932,255996) : difference with theory (-48) = 0 CORRECTING DEFECT 14 (vertices=36, convex hull=77) After retessellation of defect 14, euler #=-47 (128903,385007,256057) : difference with theory (-47) = 0 CORRECTING DEFECT 15 (vertices=28, convex hull=34) After retessellation of defect 15, euler #=-46 (128906,385026,256074) : difference with theory (-46) = 0 CORRECTING DEFECT 16 (vertices=23, convex hull=64) After retessellation of defect 16, euler #=-45 (128916,385081,256120) : difference with theory (-45) = 0 CORRECTING DEFECT 17 (vertices=22, convex hull=20) After retessellation of defect 17, euler #=-44 (128920,385098,256134) : difference with theory (-44) = 0 CORRECTING DEFECT 18 (vertices=31, convex hull=56) After retessellation of defect 18, euler #=-43 (128931,385154,256180) : difference with theory (-43) = 0 CORRECTING DEFECT 19 (vertices=76, convex hull=47) After retessellation of defect 19, euler #=-42 (128940,385196,256214) : difference with theory (-42) = 0 CORRECTING DEFECT 20 (vertices=57, convex hull=62) Warning - incorrect dp selected!!!!(-70.768641 >= -70.768642 ) After retessellation of defect 20, euler #=-41 (128948,385249,256260) : difference with theory (-41) = 0 CORRECTING DEFECT 21 (vertices=16, convex hull=45) After retessellation of defect 21, euler #=-40 (128956,385288,256292) : difference with theory (-40) = 0 CORRECTING DEFECT 22 (vertices=25, convex hull=47) After retessellation of defect 22, euler #=-39 (128965,385331,256327) : difference with theory (-39) = 0 CORRECTING DEFECT 23 (vertices=28, convex hull=69) After retessellation of defect 23, euler #=-38 (128973,385381,256370) : difference with theory (-38) = 0 CORRECTING DEFECT 24 (vertices=39, convex hull=45) After retessellation of defect 24, euler #=-37 (128980,385415,256398) : difference with theory (-37) = 0 CORRECTING DEFECT 25 (vertices=44, convex hull=81) After retessellation of defect 25, euler #=-36 (128991,385482,256455) : difference with theory (-36) = 0 CORRECTING DEFECT 26 (vertices=158, convex hull=107) After retessellation of defect 26, euler #=-35 (129040,385677,256602) : difference with theory (-35) = 0 CORRECTING DEFECT 27 (vertices=127, convex hull=157) After retessellation of defect 27, euler #=-33 (129115,385992,256844) : difference with theory (-34) = -1 CORRECTING DEFECT 28 (vertices=9, convex hull=25) After retessellation of defect 28, euler #=-32 (129117,386006,256857) : difference with theory (-33) = -1 CORRECTING DEFECT 29 (vertices=33, convex hull=45) After retessellation of defect 29, euler #=-31 (129138,386086,256917) : difference with theory (-32) = -1 CORRECTING DEFECT 30 (vertices=56, convex hull=56) After retessellation of defect 30, euler #=-30 (129147,386137,256960) : difference with theory (-31) = -1 CORRECTING DEFECT 31 (vertices=261, convex hull=169) After retessellation of defect 31, euler #=-29 (129210,386407,257168) : difference with theory (-30) = -1 CORRECTING DEFECT 32 (vertices=19, convex hull=63) After retessellation of defect 32, euler #=-28 (129219,386457,257210) : difference with theory (-29) = -1 CORRECTING DEFECT 33 (vertices=35, convex hull=44) After retessellation of defect 33, euler #=-27 (129229,386503,257247) : difference with theory (-28) = -1 CORRECTING DEFECT 34 (vertices=2232, convex hull=788) After retessellation of defect 34, euler #=-29 (129804,388680,258847) : difference with theory (-27) = 2 CORRECTING DEFECT 35 (vertices=26, convex hull=59) After retessellation of defect 35, euler #=-28 (129817,388741,258896) : difference with theory (-26) = 2 CORRECTING DEFECT 36 (vertices=87, convex hull=49) After retessellation of defect 36, euler #=-27 (129826,388791,258938) : difference with theory (-25) = 2 CORRECTING DEFECT 37 (vertices=45, convex hull=30) After retessellation of defect 37, euler #=-26 (129830,388812,258956) : difference with theory (-24) = 2 CORRECTING DEFECT 38 (vertices=6, convex hull=15) After retessellation of defect 38, euler #=-25 (129830,388817,258962) : difference with theory (-23) = 2 CORRECTING DEFECT 39 (vertices=93, convex hull=96) After retessellation of defect 39, euler #=-24 (129891,389041,259126) : difference with theory (-22) = 2 CORRECTING DEFECT 40 (vertices=171, convex hull=58) After retessellation of defect 40, euler #=-23 (129901,389092,259168) : difference with theory (-21) = 2 CORRECTING DEFECT 41 (vertices=127, convex hull=65) After retessellation of defect 41, euler #=-22 (129909,389143,259212) : difference with theory (-20) = 2 CORRECTING DEFECT 42 (vertices=375, convex hull=138) After retessellation of defect 42, euler #=-21 (129982,389432,259429) : difference with theory (-19) = 2 CORRECTING DEFECT 43 (vertices=120, convex hull=90) After retessellation of defect 43, euler #=-20 (130021,389595,259554) : difference with theory (-18) = 2 CORRECTING DEFECT 44 (vertices=15, convex hull=42) After retessellation of defect 44, euler #=-18 (130023,389614,259573) : difference with theory (-17) = 1 CORRECTING DEFECT 45 (vertices=19, convex hull=28) After retessellation of defect 45, euler #=-17 (130027,389632,259588) : difference with theory (-16) = 1 CORRECTING DEFECT 46 (vertices=29, convex hull=58) After retessellation of defect 46, euler #=-16 (130042,389698,259640) : difference with theory (-15) = 1 CORRECTING DEFECT 47 (vertices=23, convex hull=30) After retessellation of defect 47, euler #=-15 (130045,389717,259657) : difference with theory (-14) = 1 CORRECTING DEFECT 48 (vertices=27, convex hull=36) After retessellation of defect 48, euler #=-14 (130051,389749,259684) : difference with theory (-13) = 1 CORRECTING DEFECT 49 (vertices=30, convex hull=35) After retessellation of defect 49, euler #=-13 (130060,389787,259714) : difference with theory (-12) = 1 CORRECTING DEFECT 50 (vertices=7, convex hull=19) After retessellation of defect 50, euler #=-12 (130061,389797,259724) : difference with theory (-11) = 1 CORRECTING DEFECT 51 (vertices=8, convex hull=21) After retessellation of defect 51, euler #=-11 (130063,389811,259737) : difference with theory (-10) = 1 CORRECTING DEFECT 52 (vertices=44, convex hull=95) After retessellation of defect 52, euler #=-10 (130085,389917,259822) : difference with theory (-9) = 1 CORRECTING DEFECT 53 (vertices=265, convex hull=297) After retessellation of defect 53, euler #=-8 (130175,390354,260171) : difference with theory (-8) = 0 CORRECTING DEFECT 54 (vertices=93, convex hull=105) After retessellation of defect 54, euler #=-7 (130198,390467,260262) : difference with theory (-7) = 0 CORRECTING DEFECT 55 (vertices=62, convex hull=62) After retessellation of defect 55, euler #=-6 (130225,390577,260346) : difference with theory (-6) = 0 CORRECTING DEFECT 56 (vertices=27, convex hull=33) After retessellation of defect 56, euler #=-5 (130228,390601,260368) : difference with theory (-5) = 0 CORRECTING DEFECT 57 (vertices=19, convex hull=19) After retessellation of defect 57, euler #=-4 (130231,390615,260380) : difference with theory (-4) = 0 CORRECTING DEFECT 58 (vertices=19, convex hull=22) After retessellation of defect 58, euler #=-3 (130234,390630,260393) : difference with theory (-3) = 0 CORRECTING DEFECT 59 (vertices=96, convex hull=25) After retessellation of defect 59, euler #=-2 (130238,390649,260409) : difference with theory (-2) = 0 CORRECTING DEFECT 60 (vertices=44, convex hull=30) After retessellation of defect 60, euler #=-1 (130243,390675,260431) : difference with theory (-1) = 0 CORRECTING DEFECT 61 (vertices=29, convex hull=61) After retessellation of defect 61, euler #=0 (130260,390747,260487) : difference with theory (0) = 0 CORRECTING DEFECT 62 (vertices=22, convex hull=55) After retessellation of defect 62, euler #=1 (130266,390782,260517) : difference with theory (1) = 0 CORRECTING DEFECT 63 (vertices=16, convex hull=29) Warning - incorrect dp selected!!!!(-66.325150 >= -66.325155 ) After retessellation of defect 63, euler #=2 (130269,390801,260534) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.88 +- 0.25 (0.03-->17.15) (max @ vno 107932 --> 132024) face area 0.00 +- 0.00 (0.00-->0.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.88 +- 0.25 (0.03-->17.15) (max @ vno 107932 --> 132024) face area 0.00 +- 0.00 (0.00-->0.00) tessellation finished, orienting corrected surface... 218 mutations (33.0%), 442 crossovers (67.0%), 256 vertices were eliminated building final representation... 4433 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=130269, nf=260534, ne=390801, g=0) writing corrected surface to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.orig... 0.000 % of the vertices (0 vertices) exhibit an orientation change topology fixing took 29.1 minutes 0 defective edges removing intersecting faces 000: 606 intersecting 001: 37 intersecting 002: 15 intersecting \n mris_euler_number ../surf/lh.orig \n euler # = v-e+f = 2g-2: 130269 - 390801 + 260534 = 2 --> 0 holes F =2V-4: 260534 = 260538-4 (0) 2E=3F: 781602 = 781602 (0) total defect index = 0 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_remove_intersection ../surf/lh.orig ../surf/lh.orig \n intersection removal took 0.00 hours removing intersecting faces 000: 195 intersecting 001: 20 intersecting 002: 14 intersecting writing corrected surface to ../surf/lh.orig \n rm ../surf/lh.inflated \n #-------------------------------------------- #@# Make White Surf lh Fri Jan 22 10:39:55 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_make_surfaces -noaparc -mgz -T1 brain.finalsurfs T40_OM_Post lh \n not using aparc to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/filled.mgz... reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/brain.finalsurfs.mgz... reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... 13615 bright wm thresholded. 2587 bright non-wm voxels segmented. reading original surface position from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.orig... computing class statistics... border white: 274904 voxels (1.64%) border gray 286178 voxels (1.71%) WM (98.0): 98.5 +- 6.4 [70.0 --> 110.0] GM (89.0) : 86.3 +- 11.8 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 71.2 (was 70) setting MAX_BORDER_WHITE to 109.4 (was 105) setting MIN_BORDER_WHITE to 83.0 (was 85) setting MAX_CSF to 59.4 (was 40) setting MAX_GRAY to 96.6 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 77.1 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 47.6 (was 40) repositioning cortical surface to gray/white boundary reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/aseg.mgz... smoothing T1 volume with sigma = 2.000 vertex spacing 0.81 +- 0.23 (0.03-->3.88) (max @ vno 128717 --> 128786) face area 0.28 +- 0.13 (0.00-->3.99) mean absolute distance = 0.92 +- 1.23 4932 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... smoothing contralateral hemisphere... using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=103, GM=83 mean inside = 97.3, mean outside = 84.5 smoothing surface for 5 iterations... inhibiting deformation at non-cortical midline structures... mean border=90.4, 169 (169) missing vertices, mean dist 0.1 [1.1 (%38.1)->0.8 (%61.9))] %31 local maxima, %64 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=MacBo, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.88 +- 0.27 (0.09-->4.20) (max @ vno 128717 --> 128786) face area 0.28 +- 0.14 (0.00-->3.46) mean absolute distance = 0.56 +- 0.93 5260 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3794325.2, rms=7.53 001: dt: 0.5000, sse=4732749.0, rms=5.233 (0.000%) 002: dt: 0.5000, sse=4821877.0, rms=3.793 (0.000%) 003: dt: 0.5000, sse=4983173.0, rms=2.964 (0.000%) 004: dt: 0.5000, sse=5062978.0, rms=2.550 (0.000%) 005: dt: 0.5000, sse=5125445.5, rms=2.331 (0.000%) 006: dt: 0.5000, sse=5135446.0, rms=2.234 (0.000%) 007: dt: 0.5000, sse=5186906.0, rms=2.173 (0.000%) rms = 2.13, time step reduction 1 of 3 to 0.250... 008: dt: 0.5000, sse=5184181.0, rms=2.132 (0.000%) 009: dt: 0.2500, sse=3786644.2, rms=1.749 (0.000%) 010: dt: 0.2500, sse=3635573.2, rms=1.687 (0.000%) rms = 1.67, time step reduction 2 of 3 to 0.125... 011: dt: 0.2500, sse=3585314.5, rms=1.675 (0.000%) rms = 1.66, time step reduction 3 of 3 to 0.062... 012: dt: 0.1250, sse=3544368.8, rms=1.656 (0.000%) positioning took 1.2 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group mean border=92.2, 201 (88) missing vertices, mean dist -0.3 [0.7 (%59.6)->0.3 (%40.4))] %48 local maxima, %47 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=MacBo, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.87 +- 0.26 (0.01-->4.28) (max @ vno 129001 --> 129033) face area 0.33 +- 0.17 (0.00-->4.09) mean absolute distance = 0.45 +- 0.58 4551 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3815838.2, rms=3.20 013: dt: 0.5000, sse=4131819.2, rms=2.118 (0.000%) 014: dt: 0.5000, sse=4548053.5, rms=1.806 (0.000%) 015: dt: 0.5000, sse=4545250.0, rms=1.736 (0.000%) rms = 1.73, time step reduction 1 of 3 to 0.250... 016: dt: 0.5000, sse=4842411.0, rms=1.727 (0.000%) 017: dt: 0.2500, sse=3939625.2, rms=1.432 (0.000%) rms = 1.40, time step reduction 2 of 3 to 0.125... 018: dt: 0.2500, sse=3810027.0, rms=1.397 (0.000%) rms = 1.39, time step reduction 3 of 3 to 0.062... 019: dt: 0.1250, sse=3768578.0, rms=1.385 (0.000%) positioning took 0.7 minutes inhibiting deformation at non-cortical midline structures... mean border=94.3, 163 (68) missing vertices, mean dist -0.3 [0.5 (%68.3)->0.3 (%31.7))] %70 local maxima, %25 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=MacBo, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.86 +- 0.26 (0.06-->4.44) (max @ vno 129001 --> 129033) face area 0.32 +- 0.16 (0.00-->3.93) mean absolute distance = 0.33 +- 0.44 4075 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3945652.2, rms=3.14 020: dt: 0.5000, sse=4100411.5, rms=1.838 (0.000%) 021: dt: 0.5000, sse=4562468.0, rms=1.588 (0.000%) rms = 1.59, time step reduction 1 of 3 to 0.250... 022: dt: 0.5000, sse=4564965.5, rms=1.586 (0.000%) 023: dt: 0.2500, sse=4039689.0, rms=1.303 (0.000%) rms = 1.27, time step reduction 2 of 3 to 0.125... 024: dt: 0.2500, sse=3919930.2, rms=1.271 (0.000%) rms = 1.26, time step reduction 3 of 3 to 0.062... 025: dt: 0.1250, sse=3865718.2, rms=1.263 (0.000%) positioning took 0.6 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group removing 4 vertex label from ripped group mean border=95.2, 172 (60) missing vertices, mean dist -0.1 [0.4 (%59.1)->0.3 (%40.9))] %79 local maxima, %15 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=MacBo, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing white matter surface to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white... writing smoothed curvature to lh.curv 000: dt: 0.0000, sse=3887967.2, rms=1.75 026: dt: 0.5000, sse=4696701.0, rms=1.142 (0.000%) rms = 1.38, time step reduction 1 of 3 to 0.250... 027: dt: 0.2500, sse=4381830.0, rms=1.037 (0.000%) rms = 1.05, time step reduction 2 of 3 to 0.125... rms = 1.03, time step reduction 3 of 3 to 0.062... 028: dt: 0.1250, sse=4348451.5, rms=1.027 (0.000%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... generating cortex label... 10 non-cortical segments detected only using segment with 2014 vertices erasing segment 1 (vno[0] = 82826) erasing segment 2 (vno[0] = 94878) erasing segment 3 (vno[0] = 94889) erasing segment 4 (vno[0] = 98719) erasing segment 5 (vno[0] = 100234) erasing segment 6 (vno[0] = 100975) erasing segment 7 (vno[0] = 104813) erasing segment 8 (vno[0] = 106267) erasing segment 9 (vno[0] = 129155) writing cortex label to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/lh.cortex.label... writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.curv writing smoothed area to lh.area writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.area vertex spacing 0.86 +- 0.27 (0.07-->4.50) (max @ vno 129001 --> 129033) face area 0.31 +- 0.16 (0.00-->3.89) repositioning cortical surface to gray/csf boundary. smoothing T1 volume with sigma = 2.000 averaging target values for 5 iterations... smoothing surface for 5 iterations... mean border=70.6, 204 (204) missing vertices, mean dist 2.1 [1.1 (%0.0)->2.4 (%100.0))] %42 local maxima, %40 large gradients and %13 min vals, 634 gradients ignored tol=1.0e-04, sigma=2.0, host=MacBo, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 1.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=18333244.0, rms=25.44 001: dt: 0.5000, sse=15431703.0, rms=22.996 (0.000%) 002: dt: 0.5000, sse=13020912.0, rms=20.775 (0.000%) 003: dt: 0.5000, sse=11186792.0, rms=18.827 (0.000%) 004: dt: 0.5000, sse=9980426.0, rms=17.089 (0.000%) 005: dt: 0.5000, sse=9100247.0, rms=15.475 (0.000%) 006: dt: 0.5000, sse=8405524.0, rms=13.930 (0.000%) 007: dt: 0.5000, sse=7764012.0, rms=12.357 (0.000%) 008: dt: 0.5000, sse=7253163.0, rms=10.770 (0.000%) 009: dt: 0.5000, sse=6869529.0, rms=9.222 (0.000%) 010: dt: 0.5000, sse=6636880.5, rms=7.831 (0.000%) 011: dt: 0.5000, sse=6564885.5, rms=6.720 (0.000%) 012: dt: 0.5000, sse=6576463.5, rms=5.975 (0.000%) 013: dt: 0.5000, sse=6649979.0, rms=5.518 (0.000%) 014: dt: 0.5000, sse=6681207.5, rms=5.234 (0.000%) 015: dt: 0.5000, sse=6719059.5, rms=5.030 (0.000%) 016: dt: 0.5000, sse=6724408.0, rms=4.885 (0.000%) 017: dt: 0.5000, sse=6754843.0, rms=4.790 (0.000%) 018: dt: 0.5000, sse=6767303.0, rms=4.710 (0.000%) rms = 4.67, time step reduction 1 of 3 to 0.250... 019: dt: 0.5000, sse=6814488.5, rms=4.668 (0.000%) 020: dt: 0.2500, sse=4318365.5, rms=3.484 (0.000%) 021: dt: 0.2500, sse=4021721.2, rms=3.140 (0.000%) 022: dt: 0.2500, sse=3855792.2, rms=3.059 (0.000%) 023: dt: 0.2500, sse=3803382.5, rms=3.005 (0.000%) rms = 2.98, time step reduction 2 of 3 to 0.125... 024: dt: 0.2500, sse=3744389.2, rms=2.977 (0.000%) 025: dt: 0.1250, sse=3518826.0, rms=2.732 (0.000%) rms = 2.69, time step reduction 3 of 3 to 0.062... 026: dt: 0.1250, sse=3485848.8, rms=2.695 (0.000%) positioning took 2.3 minutes mean border=67.2, 431 (22) missing vertices, mean dist 0.2 [0.2 (%33.9)->0.4 (%66.1))] %65 local maxima, %22 large gradients and % 8 min vals, 238 gradients ignored tol=1.0e-04, sigma=1.0, host=MacBo, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 averaging target values for 5 iterations... 000: dt: 0.0000, sse=4316849.0, rms=5.71 027: dt: 0.5000, sse=4612763.5, rms=4.630 (0.000%) rms = 4.68, time step reduction 1 of 3 to 0.250... 028: dt: 0.2500, sse=4119243.5, rms=3.619 (0.000%) 029: dt: 0.2500, sse=4077217.0, rms=3.216 (0.000%) 030: dt: 0.2500, sse=4046439.2, rms=3.071 (0.000%) 031: dt: 0.2500, sse=4044221.8, rms=3.019 (0.000%) rms = 2.98, time step reduction 2 of 3 to 0.125... 032: dt: 0.2500, sse=4065654.0, rms=2.981 (0.000%) 033: dt: 0.1250, sse=3847570.2, rms=2.710 (0.000%) rms = 2.66, time step reduction 3 of 3 to 0.062... 034: dt: 0.1250, sse=3821559.0, rms=2.663 (0.000%) positioning took 0.8 minutes mean border=65.5, 652 (19) missing vertices, mean dist 0.1 [0.2 (%36.6)->0.3 (%63.4))] %74 local maxima, %13 large gradients and % 8 min vals, 260 gradients ignored tol=1.0e-04, sigma=0.5, host=MacBo, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 averaging target values for 5 iterations... 000: dt: 0.0000, sse=3972325.2, rms=3.57 rms = 4.38, time step reduction 1 of 3 to 0.250... 035: dt: 0.2500, sse=3820829.0, rms=2.926 (0.000%) 036: dt: 0.2500, sse=3863635.5, rms=2.737 (0.000%) 037: dt: 0.2500, sse=3957755.8, rms=2.684 (0.000%) rms = 2.69, time step reduction 2 of 3 to 0.125... 038: dt: 0.1250, sse=3902623.0, rms=2.609 (0.000%) 039: dt: 0.1250, sse=3854155.8, rms=2.498 (0.000%) rms = 2.48, time step reduction 3 of 3 to 0.062... 040: dt: 0.1250, sse=3832172.8, rms=2.476 (0.000%) positioning took 0.6 minutes mean border=64.9, 1301 (19) missing vertices, mean dist 0.0 [0.2 (%46.0)->0.2 (%54.0))] %76 local maxima, %11 large gradients and % 8 min vals, 237 gradients ignored tol=1.0e-04, sigma=0.2, host=MacBo, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing pial surface to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.pial... writing smoothed curvature to lh.curv.pial 000: dt: 0.0000, sse=3847801.2, rms=2.63 rms = 3.48, time step reduction 1 of 3 to 0.250... 041: dt: 0.2500, sse=3797851.5, rms=2.413 (0.000%) rms = 2.37, time step reduction 2 of 3 to 0.125... 042: dt: 0.2500, sse=3917484.8, rms=2.371 (0.000%) 043: dt: 0.1250, sse=3845930.8, rms=2.302 (0.000%) rms = 2.27, time step reduction 3 of 3 to 0.062... 044: dt: 0.1250, sse=3857622.5, rms=2.271 (0.000%) positioning took 0.4 minutes writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.curv.pial writing smoothed area to lh.area.pial writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.area.pial vertex spacing 0.96 +- 0.40 (0.08-->7.17) (max @ vno 98857 --> 97997) face area 0.37 +- 0.28 (0.00-->5.08) measuring cortical thickness... writing cortical thickness estimate to 'thickness' file. 0 of 130269 vertices processed 25000 of 130269 vertices processed 50000 of 130269 vertices processed 75000 of 130269 vertices processed 100000 of 130269 vertices processed 125000 of 130269 vertices processed 0 of 130269 vertices processed 25000 of 130269 vertices processed 50000 of 130269 vertices processed 75000 of 130269 vertices processed 100000 of 130269 vertices processed 125000 of 130269 vertices processed thickness calculation complete, 168:591 truncations. 38487 vertices at 0 distance 92877 vertices at 1 distance 72791 vertices at 2 distance 30585 vertices at 3 distance 9916 vertices at 4 distance 2945 vertices at 5 distance 928 vertices at 6 distance 305 vertices at 7 distance 147 vertices at 8 distance 80 vertices at 9 distance 49 vertices at 10 distance 22 vertices at 11 distance 17 vertices at 12 distance 10 vertices at 13 distance 7 vertices at 14 distance 12 vertices at 15 distance 6 vertices at 16 distance 8 vertices at 17 distance 5 vertices at 18 distance 4 vertices at 19 distance 5 vertices at 20 distance writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.thickness positioning took 10.0 minutes #-------------------------------------------- #@# Smooth2 lh Fri Jan 22 10:49:53 EET 2016 \n mris_smooth -n 3 -nw ../surf/lh.white ../surf/lh.smoothwm \n /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts smoothing for 3 iterations smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation2 lh Fri Jan 22 10:50:00 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_inflate ../surf/lh.smoothwm ../surf/lh.inflated \n avg radius = 46.6 mm, total surface area = 73709 mm^2 writing inflated surface to ../surf/lh.inflated writing sulcal depths to ../surf/lh.sulc step 000: RMS=0.115 (target=0.015) step 005: RMS=0.082 (target=0.015) step 010: RMS=0.061 (target=0.015) step 015: RMS=0.050 (target=0.015) step 020: RMS=0.042 (target=0.015) step 025: RMS=0.035 (target=0.015) step 030: RMS=0.030 (target=0.015) step 035: RMS=0.026 (target=0.015) step 040: RMS=0.023 (target=0.015) step 045: RMS=0.021 (target=0.015) step 050: RMS=0.019 (target=0.015) step 055: RMS=0.018 (target=0.015) step 060: RMS=0.016 (target=0.015) inflation complete. inflation took 0.4 minutes \n mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 ../surf/lh.inflated \n normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 152 vertices thresholded to be in k1 ~ [-0.35 0.68], k2 ~ [-0.28 0.10] total integrated curvature = 0.525*4pi (6.592) --> 0 handles ICI = 1.4, FI = 8.8, variation=150.344 136 vertices thresholded to be in [-0.11 0.02] writing Gaussian curvature to ../surf/lh.inflated.K...thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.002 100 vertices thresholded to be in [-0.15 0.22] done. writing mean curvature to ../surf/lh.inflated.H...curvature mean = -0.017, std = 0.023 done. \n#----------------------------------------- #@# Curvature Stats lh Fri Jan 22 10:51:21 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf \n mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/lh.curv.stats -F smoothwm T40_OM_Post lh curv sulc \n Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/lh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ T40_OM_Post/lh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vertex faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 234 ] Gb_filter = 0 WARN: S lookup min: -0.447552 WARN: S explicit min: 0.000000 vertex = 218 #-------------------------------------------- #@# Tessellate rh Fri Jan 22 10:51:27 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mri_pretess ../mri/filled.mgz 127 ../mri/norm.mgz ../mri/filled-pretess127.mgz \n Iteration Number : 1 pass 1 (xy+): 1 found - 1 modified | TOTAL: 1 pass 2 (xy+): 0 found - 1 modified | TOTAL: 1 pass 1 (xy-): 0 found - 0 modified | TOTAL: 1 pass 1 (yz+): 1 found - 1 modified | TOTAL: 2 pass 2 (yz+): 0 found - 1 modified | TOTAL: 2 pass 1 (yz-): 0 found - 0 modified | TOTAL: 2 pass 1 (xz+): 1 found - 1 modified | TOTAL: 3 pass 2 (xz+): 0 found - 1 modified | TOTAL: 3 pass 1 (xz-): 0 found - 0 modified | TOTAL: 3 Iteration Number : 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 1 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 1 found - 1 modified | TOTAL: 1 pass 2 (+-): 0 found - 1 modified | TOTAL: 1 pass 1 (--): 0 found - 0 modified | TOTAL: 1 pass 1 (-+): 0 found - 0 modified | TOTAL: 1 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 4 (out of 277953: 0.001439) Ambiguous edge configurations... mri_pretess done \n mri_tessellate ../mri/filled-pretess127.mgz 127 ../surf/rh.orig.nofix \n $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ slice 40: 43 vertices, 56 faces slice 50: 3221 vertices, 3412 faces slice 60: 11468 vertices, 11798 faces slice 70: 22872 vertices, 23277 faces slice 80: 34386 vertices, 34758 faces slice 90: 45617 vertices, 45988 faces slice 100: 57173 vertices, 57538 faces slice 110: 68090 vertices, 68496 faces slice 120: 79592 vertices, 80008 faces slice 130: 91098 vertices, 91538 faces slice 140: 102486 vertices, 102951 faces slice 150: 111891 vertices, 112253 faces slice 160: 120223 vertices, 120579 faces slice 170: 127024 vertices, 127354 faces slice 180: 132268 vertices, 132567 faces slice 190: 135486 vertices, 135668 faces slice 200: 135632 vertices, 135770 faces slice 210: 135632 vertices, 135770 faces slice 220: 135632 vertices, 135770 faces slice 230: 135632 vertices, 135770 faces slice 240: 135632 vertices, 135770 faces slice 250: 135632 vertices, 135770 faces using the conformed surface RAS to save vertex points... writing ../surf/rh.orig.nofix using vox2ras matrix: -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; \n rm -f ../mri/filled-pretess127.mgz \n \n mris_extract_main_component ../surf/rh.orig.nofix ../surf/rh.orig.nofix \n counting number of connected components... 135632 voxel in cpt #1: X=-138 [v=135632,e=407310,f=271540] located at (29.725058, -18.280294, -0.531165) For the whole surface: X=-138 [v=135632,e=407310,f=271540] One single component has been found nothing to do done #-------------------------------------------- #@# Smooth1 rh Fri Jan 22 10:51:35 EET 2016 \n mris_smooth -nw ../surf/rh.orig.nofix ../surf/rh.smoothwm.nofix \n /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation1 rh Fri Jan 22 10:51:40 EET 2016 \n mris_inflate -no-save-sulc ../surf/rh.smoothwm.nofix ../surf/rh.inflated.nofix \n /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts avg radius = 46.0 mm, total surface area = 70068 mm^2 writing inflated surface to ../surf/rh.inflated.nofix inflation took 0.4 minutes Not saving sulc step 000: RMS=0.109 (target=0.015) step 005: RMS=0.082 (target=0.015) step 010: RMS=0.065 (target=0.015) step 015: RMS=0.058 (target=0.015) step 020: RMS=0.052 (target=0.015) step 025: RMS=0.047 (target=0.015) step 030: RMS=0.044 (target=0.015) step 035: RMS=0.042 (target=0.015) step 040: RMS=0.041 (target=0.015) step 045: RMS=0.040 (target=0.015) step 050: RMS=0.038 (target=0.015) step 055: RMS=0.037 (target=0.015) step 060: RMS=0.037 (target=0.015) inflation complete. Not saving sulc #-------------------------------------------- #@# QSphere rh Fri Jan 22 10:52:03 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_sphere -q ../surf/rh.inflated.nofix ../surf/rh.qsphere.nofix \n doing quick spherical unfolding. $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... vertex spacing 1.00 +- 0.57 (0.00-->6.29) (max @ vno 62377 --> 63338) face area 0.03 +- 0.04 (-0.08-->0.54) writing spherical brain to ../surf/rh.qsphere.nofix spherical transformation took 0.05 hours scaling brain by 0.344... inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=174.984, avgs=0 005/300: dt: 0.9000, rms radial error=174.726, avgs=0 010/300: dt: 0.9000, rms radial error=174.173, avgs=0 015/300: dt: 0.9000, rms radial error=173.448, avgs=0 020/300: dt: 0.9000, rms radial error=172.623, avgs=0 025/300: dt: 0.9000, rms radial error=171.742, avgs=0 030/300: dt: 0.9000, rms radial error=170.829, avgs=0 035/300: dt: 0.9000, rms radial error=169.901, avgs=0 040/300: dt: 0.9000, rms radial error=168.964, avgs=0 045/300: dt: 0.9000, rms radial error=168.026, avgs=0 050/300: dt: 0.9000, rms radial error=167.089, avgs=0 055/300: dt: 0.9000, rms radial error=166.156, avgs=0 060/300: dt: 0.9000, rms radial error=165.226, avgs=0 065/300: dt: 0.9000, rms radial error=164.300, avgs=0 070/300: dt: 0.9000, rms radial error=163.376, avgs=0 075/300: dt: 0.9000, rms radial error=162.457, avgs=0 080/300: dt: 0.9000, rms radial error=161.543, avgs=0 085/300: dt: 0.9000, rms radial error=160.635, avgs=0 090/300: dt: 0.9000, rms radial error=159.731, avgs=0 095/300: dt: 0.9000, rms radial error=158.832, avgs=0 100/300: dt: 0.9000, rms radial error=157.938, avgs=0 105/300: dt: 0.9000, rms radial error=157.049, avgs=0 110/300: dt: 0.9000, rms radial error=156.165, avgs=0 115/300: dt: 0.9000, rms radial error=155.285, avgs=0 120/300: dt: 0.9000, rms radial error=154.410, avgs=0 125/300: dt: 0.9000, rms radial error=153.539, avgs=0 130/300: dt: 0.9000, rms radial error=152.674, avgs=0 135/300: dt: 0.9000, rms radial error=151.813, avgs=0 140/300: dt: 0.9000, rms radial error=150.957, avgs=0 145/300: dt: 0.9000, rms radial error=150.106, avgs=0 150/300: dt: 0.9000, rms radial error=149.261, avgs=0 155/300: dt: 0.9000, rms radial error=148.420, avgs=0 160/300: dt: 0.9000, rms radial error=147.584, avgs=0 165/300: dt: 0.9000, rms radial error=146.753, avgs=0 170/300: dt: 0.9000, rms radial error=145.927, avgs=0 175/300: dt: 0.9000, rms radial error=145.105, avgs=0 180/300: dt: 0.9000, rms radial error=144.287, avgs=0 185/300: dt: 0.9000, rms radial error=143.475, avgs=0 190/300: dt: 0.9000, rms radial error=142.667, avgs=0 195/300: dt: 0.9000, rms radial error=141.864, avgs=0 200/300: dt: 0.9000, rms radial error=141.065, avgs=0 205/300: dt: 0.9000, rms radial error=140.270, avgs=0 210/300: dt: 0.9000, rms radial error=139.480, avgs=0 215/300: dt: 0.9000, rms radial error=138.694, avgs=0 220/300: dt: 0.9000, rms radial error=137.913, avgs=0 225/300: dt: 0.9000, rms radial error=137.135, avgs=0 230/300: dt: 0.9000, rms radial error=136.362, avgs=0 235/300: dt: 0.9000, rms radial error=135.594, avgs=0 240/300: dt: 0.9000, rms radial error=134.829, avgs=0 245/300: dt: 0.9000, rms radial error=134.069, avgs=0 250/300: dt: 0.9000, rms radial error=133.313, avgs=0 255/300: dt: 0.9000, rms radial error=132.562, avgs=0 260/300: dt: 0.9000, rms radial error=131.814, avgs=0 265/300: dt: 0.9000, rms radial error=131.071, avgs=0 270/300: dt: 0.9000, rms radial error=130.331, avgs=0 275/300: dt: 0.9000, rms radial error=129.596, avgs=0 280/300: dt: 0.9000, rms radial error=128.865, avgs=0 285/300: dt: 0.9000, rms radial error=128.138, avgs=0 290/300: dt: 0.9000, rms radial error=127.415, avgs=0 295/300: dt: 0.9000, rms radial error=126.696, avgs=0 300/300: dt: 0.9000, rms radial error=125.981, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 15364.20 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00009 epoch 2 (K=40.0), pass 1, starting sse = 2420.06 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00013 epoch 3 (K=160.0), pass 1, starting sse = 233.05 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.03/10 = 0.00301 epoch 4 (K=640.0), pass 1, starting sse = 19.76 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.06/12 = 0.00531 final distance error %100000.00 #-------------------------------------------- #@# Fix Topology rh Fri Jan 22 10:54:48 EET 2016 \n cp ../surf/rh.orig.nofix ../surf/rh.orig \n \n cp ../surf/rh.inflated.nofix ../surf/rh.inflated \n /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_fix_topology -mgz -sphere qsphere.nofix -ga T40_OM_Post rh \n reading spherical homeomorphism from 'qsphere.nofix' using genetic algorithm with optimized parameters ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ before topology correction, eno=-138 (nv=135632, nf=271540, ne=407310, g=70) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 11 iterations marking ambiguous vertices... 8038 ambiguous faces found in tessellation segmenting defects... 71 defects found, arbitrating ambiguous regions... analyzing neighboring defects... -merging segment 24 into 21 -merging segment 51 into 45 69 defects to be corrected 0 vertices coincident reading input surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Computing Initial Surface Statistics -face loglikelihood: -8.9628 (-4.4814) -vertex loglikelihood: -5.9727 (-2.9863) -normal dot loglikelihood: -3.5288 (-3.5288) -quad curv loglikelihood: -6.5971 (-3.2986) Total Loglikelihood : -25.0615 CORRECTING DEFECT 0 (vertices=41, convex hull=54) After retessellation of defect 0, euler #=-66 (130714,390132,259352) : difference with theory (-66) = 0 CORRECTING DEFECT 1 (vertices=60, convex hull=100) After retessellation of defect 1, euler #=-65 (130743,390262,259454) : difference with theory (-65) = 0 CORRECTING DEFECT 2 (vertices=167, convex hull=61) After retessellation of defect 2, euler #=-64 (130761,390343,259518) : difference with theory (-64) = 0 CORRECTING DEFECT 3 (vertices=6, convex hull=15) After retessellation of defect 3, euler #=-63 (130762,390350,259525) : difference with theory (-63) = 0 CORRECTING DEFECT 4 (vertices=51, convex hull=99) After retessellation of defect 4, euler #=-62 (130782,390456,259612) : difference with theory (-62) = 0 CORRECTING DEFECT 5 (vertices=28, convex hull=34) After retessellation of defect 5, euler #=-61 (130786,390480,259633) : difference with theory (-61) = 0 CORRECTING DEFECT 6 (vertices=22, convex hull=55) After retessellation of defect 6, euler #=-60 (130802,390552,259690) : difference with theory (-60) = 0 CORRECTING DEFECT 7 (vertices=48, convex hull=52) After retessellation of defect 7, euler #=-59 (130814,390608,259735) : difference with theory (-59) = 0 CORRECTING DEFECT 8 (vertices=50, convex hull=52) After retessellation of defect 8, euler #=-58 (130822,390650,259770) : difference with theory (-58) = 0 CORRECTING DEFECT 9 (vertices=17, convex hull=32) After retessellation of defect 9, euler #=-57 (130824,390666,259785) : difference with theory (-57) = 0 CORRECTING DEFECT 10 (vertices=43, convex hull=68) After retessellation of defect 10, euler #=-56 (130834,390720,259830) : difference with theory (-56) = 0 CORRECTING DEFECT 11 (vertices=24, convex hull=34) After retessellation of defect 11, euler #=-55 (130846,390767,259866) : difference with theory (-55) = 0 CORRECTING DEFECT 12 (vertices=65, convex hull=96) After retessellation of defect 12, euler #=-54 (130895,390958,260009) : difference with theory (-54) = 0 CORRECTING DEFECT 13 (vertices=71, convex hull=90) After retessellation of defect 13, euler #=-53 (130928,391094,260113) : difference with theory (-53) = 0 CORRECTING DEFECT 14 (vertices=37, convex hull=29) After retessellation of defect 14, euler #=-52 (130931,391113,260130) : difference with theory (-52) = 0 CORRECTING DEFECT 15 (vertices=37, convex hull=58) After retessellation of defect 15, euler #=-51 (130955,391209,260203) : difference with theory (-51) = 0 CORRECTING DEFECT 16 (vertices=242, convex hull=86) After retessellation of defect 16, euler #=-50 (130974,391306,260282) : difference with theory (-50) = 0 CORRECTING DEFECT 17 (vertices=30, convex hull=55) After retessellation of defect 17, euler #=-49 (130992,391381,260340) : difference with theory (-49) = 0 CORRECTING DEFECT 18 (vertices=25, convex hull=62) After retessellation of defect 18, euler #=-48 (131002,391436,260386) : difference with theory (-48) = 0 CORRECTING DEFECT 19 (vertices=104, convex hull=77) After retessellation of defect 19, euler #=-47 (131010,391499,260442) : difference with theory (-47) = 0 CORRECTING DEFECT 20 (vertices=43, convex hull=26) After retessellation of defect 20, euler #=-46 (131016,391523,260461) : difference with theory (-46) = 0 CORRECTING DEFECT 21 (vertices=278, convex hull=264) After retessellation of defect 21, euler #=-44 (131063,391791,260684) : difference with theory (-45) = -1 CORRECTING DEFECT 22 (vertices=77, convex hull=68) After retessellation of defect 22, euler #=-43 (131086,391892,260763) : difference with theory (-44) = -1 CORRECTING DEFECT 23 (vertices=26, convex hull=51) After retessellation of defect 23, euler #=-42 (131103,391964,260819) : difference with theory (-43) = -1 CORRECTING DEFECT 24 (vertices=55, convex hull=76) After retessellation of defect 24, euler #=-41 (131120,392046,260885) : difference with theory (-42) = -1 CORRECTING DEFECT 25 (vertices=31, convex hull=53) After retessellation of defect 25, euler #=-40 (131135,392113,260938) : difference with theory (-41) = -1 CORRECTING DEFECT 26 (vertices=98, convex hull=63) After retessellation of defect 26, euler #=-39 (131149,392181,260993) : difference with theory (-40) = -1 CORRECTING DEFECT 27 (vertices=8, convex hull=19) After retessellation of defect 27, euler #=-38 (131150,392190,261002) : difference with theory (-39) = -1 CORRECTING DEFECT 28 (vertices=124, convex hull=113) After retessellation of defect 28, euler #=-37 (131202,392396,261157) : difference with theory (-38) = -1 CORRECTING DEFECT 29 (vertices=139, convex hull=41) After retessellation of defect 29, euler #=-36 (131211,392445,261198) : difference with theory (-37) = -1 CORRECTING DEFECT 30 (vertices=27, convex hull=34) After retessellation of defect 30, euler #=-35 (131214,392467,261218) : difference with theory (-36) = -1 CORRECTING DEFECT 31 (vertices=43, convex hull=44) After retessellation of defect 31, euler #=-34 (131225,392513,261254) : difference with theory (-35) = -1 CORRECTING DEFECT 32 (vertices=15, convex hull=38) After retessellation of defect 32, euler #=-33 (131233,392549,261283) : difference with theory (-34) = -1 CORRECTING DEFECT 33 (vertices=18, convex hull=37) After retessellation of defect 33, euler #=-32 (131241,392584,261311) : difference with theory (-33) = -1 CORRECTING DEFECT 34 (vertices=110, convex hull=83) After retessellation of defect 34, euler #=-31 (131271,392712,261410) : difference with theory (-32) = -1 CORRECTING DEFECT 35 (vertices=17, convex hull=34) After retessellation of defect 35, euler #=-30 (131275,392734,261429) : difference with theory (-31) = -1 CORRECTING DEFECT 36 (vertices=336, convex hull=181) After retessellation of defect 36, euler #=-30 (131310,392942,261602) : difference with theory (-30) = 0 CORRECTING DEFECT 37 (vertices=12, convex hull=17) After retessellation of defect 37, euler #=-29 (131312,392954,261613) : difference with theory (-29) = 0 CORRECTING DEFECT 38 (vertices=40, convex hull=45) After retessellation of defect 38, euler #=-28 (131322,393001,261651) : difference with theory (-28) = 0 CORRECTING DEFECT 39 (vertices=368, convex hull=174) After retessellation of defect 39, euler #=-27 (131420,393377,261930) : difference with theory (-27) = 0 CORRECTING DEFECT 40 (vertices=24, convex hull=43) After retessellation of defect 40, euler #=-26 (131432,393427,261969) : difference with theory (-26) = 0 CORRECTING DEFECT 41 (vertices=88, convex hull=73) After retessellation of defect 41, euler #=-25 (131465,393560,262070) : difference with theory (-25) = 0 CORRECTING DEFECT 42 (vertices=199, convex hull=133) After retessellation of defect 42, euler #=-24 (131523,393796,262249) : difference with theory (-24) = 0 CORRECTING DEFECT 43 (vertices=565, convex hull=190) After retessellation of defect 43, euler #=-23 (131613,394163,262527) : difference with theory (-23) = 0 CORRECTING DEFECT 44 (vertices=124, convex hull=135) After retessellation of defect 44, euler #=-21 (131654,394357,262682) : difference with theory (-22) = -1 CORRECTING DEFECT 45 (vertices=69, convex hull=84) After retessellation of defect 45, euler #=-21 (131690,394506,262795) : difference with theory (-21) = 0 CORRECTING DEFECT 46 (vertices=13, convex hull=27) After retessellation of defect 46, euler #=-20 (131692,394518,262806) : difference with theory (-20) = 0 CORRECTING DEFECT 47 (vertices=62, convex hull=61) After retessellation of defect 47, euler #=-19 (131720,394629,262890) : difference with theory (-19) = 0 CORRECTING DEFECT 48 (vertices=14, convex hull=30) After retessellation of defect 48, euler #=-18 (131722,394644,262904) : difference with theory (-18) = 0 CORRECTING DEFECT 49 (vertices=8, convex hull=31) Warning - incorrect dp selected!!!!(-69.673786 >= -69.673791 ) After retessellation of defect 49, euler #=-17 (131724,394656,262915) : difference with theory (-17) = 0 CORRECTING DEFECT 50 (vertices=34, convex hull=63) After retessellation of defect 50, euler #=-16 (131742,394738,262980) : difference with theory (-16) = 0 CORRECTING DEFECT 51 (vertices=129, convex hull=111) After retessellation of defect 51, euler #=-15 (131791,394942,263136) : difference with theory (-15) = 0 CORRECTING DEFECT 52 (vertices=41, convex hull=79) After retessellation of defect 52, euler #=-14 (131817,395049,263218) : difference with theory (-14) = 0 CORRECTING DEFECT 53 (vertices=10, convex hull=31) After retessellation of defect 53, euler #=-13 (131818,395061,263230) : difference with theory (-13) = 0 CORRECTING DEFECT 54 (vertices=75, convex hull=102) After retessellation of defect 54, euler #=-12 (131862,395237,263363) : difference with theory (-12) = 0 CORRECTING DEFECT 55 (vertices=42, convex hull=57) After retessellation of defect 55, euler #=-11 (131873,395294,263410) : difference with theory (-11) = 0 CORRECTING DEFECT 56 (vertices=7, convex hull=37) Warning - incorrect dp selected!!!!(-71.732410 >= -71.732416 ) After retessellation of defect 56, euler #=-10 (131874,395309,263425) : difference with theory (-10) = 0 CORRECTING DEFECT 57 (vertices=20, convex hull=68) After retessellation of defect 57, euler #=-9 (131883,395365,263473) : difference with theory (-9) = 0 CORRECTING DEFECT 58 (vertices=64, convex hull=109) After retessellation of defect 58, euler #=-8 (131923,395531,263600) : difference with theory (-8) = 0 CORRECTING DEFECT 59 (vertices=38, convex hull=54) After retessellation of defect 59, euler #=-7 (131940,395602,263655) : difference with theory (-7) = 0 CORRECTING DEFECT 60 (vertices=26, convex hull=63) After retessellation of defect 60, euler #=-6 (131948,395649,263695) : difference with theory (-6) = 0 CORRECTING DEFECT 61 (vertices=31, convex hull=65) After retessellation of defect 61, euler #=-5 (131965,395723,263753) : difference with theory (-5) = 0 CORRECTING DEFECT 62 (vertices=45, convex hull=76) After retessellation of defect 62, euler #=-4 (131990,395829,263835) : difference with theory (-4) = 0 CORRECTING DEFECT 63 (vertices=26, convex hull=59) After retessellation of defect 63, euler #=-3 (132001,395886,263882) : difference with theory (-3) = 0 CORRECTING DEFECT 64 (vertices=55, convex hull=90) After retessellation of defect 64, euler #=-2 (132025,395994,263967) : difference with theory (-2) = 0 CORRECTING DEFECT 65 (vertices=24, convex hull=65) After retessellation of defect 65, euler #=-1 (132038,396056,264017) : difference with theory (-1) = 0 CORRECTING DEFECT 66 (vertices=25, convex hull=66) After retessellation of defect 66, euler #=0 (132047,396108,264061) : difference with theory (0) = 0 CORRECTING DEFECT 67 (vertices=20, convex hull=20) After retessellation of defect 67, euler #=1 (132051,396126,264076) : difference with theory (1) = 0 CORRECTING DEFECT 68 (vertices=23, convex hull=65) After retessellation of defect 68, euler #=2 (132060,396174,264116) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.88 +- 0.24 (0.06-->9.65) (max @ vno 100496 --> 104283) face area 0.00 +- 0.00 (0.00-->0.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.88 +- 0.24 (0.06-->9.65) (max @ vno 100496 --> 104283) face area 0.00 +- 0.00 (0.00-->0.00) tessellation finished, orienting corrected surface... 244 mutations (35.7%), 440 crossovers (64.3%), 264 vertices were eliminated building final representation... 3572 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=132060, nf=264116, ne=396174, g=0) writing corrected surface to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.orig... 0.000 % of the vertices (0 vertices) exhibit an orientation change topology fixing took 30.8 minutes 0 defective edges removing intersecting faces 000: 460 intersecting 001: 10 intersecting \n mris_euler_number ../surf/rh.orig \n euler # = v-e+f = 2g-2: 132060 - 396174 + 264116 = 2 --> 0 holes F =2V-4: 264116 = 264120-4 (0) 2E=3F: 792348 = 792348 (0) total defect index = 0 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_remove_intersection ../surf/rh.orig ../surf/rh.orig \n intersection removal took 0.00 hours removing intersecting faces 000: 55 intersecting 001: 23 intersecting writing corrected surface to ../surf/rh.orig \n rm ../surf/rh.inflated \n #-------------------------------------------- #@# Make White Surf rh Fri Jan 22 11:25:46 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_make_surfaces -noaparc -mgz -T1 brain.finalsurfs T40_OM_Post rh \n not using aparc to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/filled.mgz... reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/brain.finalsurfs.mgz... reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... 13350 bright wm thresholded. 2609 bright non-wm voxels segmented. reading original surface position from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.orig... computing class statistics... border white: 274904 voxels (1.64%) border gray 286178 voxels (1.71%) WM (98.0): 98.5 +- 6.5 [70.0 --> 110.0] GM (89.0) : 86.3 +- 11.6 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 71.4 (was 70) setting MAX_BORDER_WHITE to 109.5 (was 105) setting MIN_BORDER_WHITE to 83.0 (was 85) setting MAX_CSF to 59.9 (was 40) setting MAX_GRAY to 96.5 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 77.2 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 48.3 (was 40) repositioning cortical surface to gray/white boundary reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/aseg.mgz... smoothing T1 volume with sigma = 2.000 vertex spacing 0.81 +- 0.23 (0.01-->4.32) (max @ vno 115086 --> 131338) face area 0.27 +- 0.13 (0.00-->2.89) mean absolute distance = 0.92 +- 1.22 4845 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... smoothing contralateral hemisphere... using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=103, GM=83 mean inside = 97.4, mean outside = 84.7 smoothing surface for 5 iterations... inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group removing 2 vertex label from ripped group mean border=90.6, 103 (103) missing vertices, mean dist 0.1 [1.1 (%37.7)->0.8 (%62.3))] %35 local maxima, %60 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=MacBo, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.89 +- 0.26 (0.03-->4.62) (max @ vno 131558 --> 131564) face area 0.27 +- 0.14 (0.00-->2.86) mean absolute distance = 0.56 +- 0.91 5384 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3774025.8, rms=7.41 001: dt: 0.5000, sse=4748205.0, rms=5.101 (0.000%) 002: dt: 0.5000, sse=4864301.0, rms=3.640 (0.000%) 003: dt: 0.5000, sse=5046048.0, rms=2.823 (0.000%) 004: dt: 0.5000, sse=5161773.5, rms=2.417 (0.000%) 005: dt: 0.5000, sse=5199080.0, rms=2.223 (0.000%) 006: dt: 0.5000, sse=5238590.0, rms=2.133 (0.000%) 007: dt: 0.5000, sse=5255645.0, rms=2.081 (0.000%) rms = 2.05, time step reduction 1 of 3 to 0.250... 008: dt: 0.5000, sse=5306718.5, rms=2.052 (0.000%) 009: dt: 0.2500, sse=3842427.2, rms=1.674 (0.000%) rms = 1.63, time step reduction 2 of 3 to 0.125... 010: dt: 0.2500, sse=3711176.0, rms=1.626 (0.000%) rms = 1.61, time step reduction 3 of 3 to 0.062... 011: dt: 0.1250, sse=3646650.0, rms=1.611 (0.000%) positioning took 1.1 minutes inhibiting deformation at non-cortical midline structures... removing 2 vertex label from ripped group mean border=92.3, 126 (46) missing vertices, mean dist -0.3 [0.7 (%60.1)->0.3 (%39.9))] %50 local maxima, %44 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=MacBo, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.87 +- 0.26 (0.06-->4.64) (max @ vno 131558 --> 131564) face area 0.33 +- 0.16 (0.00-->3.63) mean absolute distance = 0.45 +- 0.59 4893 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3940580.0, rms=3.26 012: dt: 0.5000, sse=4234500.5, rms=2.168 (0.000%) 013: dt: 0.5000, sse=4675649.5, rms=1.830 (0.000%) 014: dt: 0.5000, sse=4653507.0, rms=1.752 (0.000%) rms = 1.74, time step reduction 1 of 3 to 0.250... 015: dt: 0.5000, sse=4985433.0, rms=1.741 (0.000%) 016: dt: 0.2500, sse=4033356.2, rms=1.443 (0.000%) rms = 1.41, time step reduction 2 of 3 to 0.125... 017: dt: 0.2500, sse=3912553.2, rms=1.408 (0.000%) rms = 1.40, time step reduction 3 of 3 to 0.062... 018: dt: 0.1250, sse=3866527.5, rms=1.396 (0.000%) positioning took 0.7 minutes inhibiting deformation at non-cortical midline structures... removing 4 vertex label from ripped group mean border=94.4, 149 (29) missing vertices, mean dist -0.3 [0.5 (%67.5)->0.3 (%32.5))] %71 local maxima, %24 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=MacBo, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.86 +- 0.26 (0.06-->4.73) (max @ vno 131558 --> 131564) face area 0.32 +- 0.16 (0.00-->3.50) mean absolute distance = 0.34 +- 0.45 3705 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=4033388.8, rms=3.05 019: dt: 0.5000, sse=4266287.5, rms=1.806 (0.000%) 020: dt: 0.5000, sse=4739501.5, rms=1.578 (0.000%) rms = 1.60, time step reduction 1 of 3 to 0.250... 021: dt: 0.2500, sse=4307349.0, rms=1.397 (0.000%) 022: dt: 0.2500, sse=4090743.5, rms=1.315 (0.000%) rms = 1.31, time step reduction 2 of 3 to 0.125... 023: dt: 0.2500, sse=4046972.0, rms=1.306 (0.000%) rms = 1.30, time step reduction 3 of 3 to 0.062... 024: dt: 0.1250, sse=4009937.0, rms=1.296 (0.000%) positioning took 0.6 minutes inhibiting deformation at non-cortical midline structures... removing 2 vertex label from ripped group mean border=95.3, 166 (22) missing vertices, mean dist -0.1 [0.4 (%59.2)->0.3 (%40.8))] %80 local maxima, %15 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=MacBo, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing white matter surface to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white... writing smoothed curvature to rh.curv 000: dt: 0.0000, sse=4032919.8, rms=1.77 025: dt: 0.5000, sse=4895876.5, rms=1.165 (0.000%) rms = 1.38, time step reduction 1 of 3 to 0.250... 026: dt: 0.2500, sse=4566435.5, rms=1.071 (0.000%) rms = 1.08, time step reduction 2 of 3 to 0.125... rms = 1.06, time step reduction 3 of 3 to 0.062... 027: dt: 0.1250, sse=4530467.5, rms=1.063 (0.000%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... generating cortex label... 22 non-cortical segments detected only using segment with 2098 vertices erasing segment 1 (vno[0] = 80633) erasing segment 2 (vno[0] = 80664) erasing segment 3 (vno[0] = 81950) erasing segment 4 (vno[0] = 86347) erasing segment 5 (vno[0] = 87538) erasing segment 6 (vno[0] = 88599) erasing segment 7 (vno[0] = 91660) erasing segment 8 (vno[0] = 96791) erasing segment 9 (vno[0] = 96853) erasing segment 10 (vno[0] = 97933) erasing segment 11 (vno[0] = 98930) erasing segment 12 (vno[0] = 100143) erasing segment 13 (vno[0] = 101247) erasing segment 14 (vno[0] = 101272) erasing segment 15 (vno[0] = 102201) erasing segment 16 (vno[0] = 102221) erasing segment 17 (vno[0] = 103979) erasing segment 18 (vno[0] = 105669) erasing segment 19 (vno[0] = 105754) erasing segment 20 (vno[0] = 106591) erasing segment 21 (vno[0] = 106614) writing cortex label to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/rh.cortex.label... writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.curv writing smoothed area to rh.area writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.area vertex spacing 0.86 +- 0.26 (0.06-->4.89) (max @ vno 131558 --> 131564) face area 0.31 +- 0.16 (0.00-->3.26) repositioning cortical surface to gray/csf boundary. smoothing T1 volume with sigma = 2.000 averaging target values for 5 iterations... smoothing surface for 5 iterations... mean border=71.0, 102 (102) missing vertices, mean dist 2.0 [0.1 (%0.0)->2.4 (%100.0))] %40 local maxima, %40 large gradients and %15 min vals, 628 gradients ignored tol=1.0e-04, sigma=2.0, host=MacBo, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 1.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=18152620.0, rms=25.09 001: dt: 0.5000, sse=15293398.0, rms=22.686 (0.000%) 002: dt: 0.5000, sse=12911282.0, rms=20.499 (0.000%) 003: dt: 0.5000, sse=11074324.0, rms=18.557 (0.000%) 004: dt: 0.5000, sse=9815021.0, rms=16.794 (0.000%) 005: dt: 0.5000, sse=8930510.0, rms=15.166 (0.000%) 006: dt: 0.5000, sse=8290514.0, rms=13.607 (0.000%) 007: dt: 0.5000, sse=7723840.5, rms=12.077 (0.000%) 008: dt: 0.5000, sse=7280303.5, rms=10.569 (0.000%) 009: dt: 0.5000, sse=6942001.5, rms=9.160 (0.000%) 010: dt: 0.5000, sse=6779512.0, rms=7.912 (0.000%) 011: dt: 0.5000, sse=6714769.5, rms=6.898 (0.000%) 012: dt: 0.5000, sse=6690790.5, rms=6.098 (0.000%) 013: dt: 0.5000, sse=6756166.0, rms=5.551 (0.000%) 014: dt: 0.5000, sse=6786566.5, rms=5.210 (0.000%) 015: dt: 0.5000, sse=6838928.5, rms=5.007 (0.000%) 016: dt: 0.5000, sse=6871108.0, rms=4.864 (0.000%) 017: dt: 0.5000, sse=6882106.0, rms=4.784 (0.000%) 018: dt: 0.5000, sse=6884992.0, rms=4.700 (0.000%) rms = 4.65, time step reduction 1 of 3 to 0.250... 019: dt: 0.5000, sse=6914878.5, rms=4.651 (0.000%) 020: dt: 0.2500, sse=4425975.5, rms=3.558 (0.000%) 021: dt: 0.2500, sse=4164131.0, rms=3.231 (0.000%) 022: dt: 0.2500, sse=3988571.2, rms=3.155 (0.000%) rms = 3.11, time step reduction 2 of 3 to 0.125... 023: dt: 0.2500, sse=3937130.5, rms=3.106 (0.000%) 024: dt: 0.1250, sse=3679315.8, rms=2.885 (0.000%) rms = 2.85, time step reduction 3 of 3 to 0.062... 025: dt: 0.1250, sse=3626901.2, rms=2.847 (0.000%) positioning took 2.3 minutes mean border=67.8, 767 (23) missing vertices, mean dist 0.2 [0.2 (%33.7)->0.4 (%66.3))] %63 local maxima, %22 large gradients and %11 min vals, 302 gradients ignored tol=1.0e-04, sigma=1.0, host=MacBo, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 averaging target values for 5 iterations... 000: dt: 0.0000, sse=4404122.5, rms=5.57 026: dt: 0.5000, sse=4634811.5, rms=4.608 (0.000%) rms = 4.67, time step reduction 1 of 3 to 0.250... 027: dt: 0.2500, sse=4191619.5, rms=3.673 (0.000%) 028: dt: 0.2500, sse=4225758.5, rms=3.309 (0.000%) 029: dt: 0.2500, sse=4166877.0, rms=3.145 (0.000%) 030: dt: 0.2500, sse=4195204.5, rms=3.087 (0.000%) 031: dt: 0.2500, sse=4172748.5, rms=3.022 (0.000%) rms = 2.99, time step reduction 2 of 3 to 0.125... 032: dt: 0.2500, sse=4201486.5, rms=2.986 (0.000%) 033: dt: 0.1250, sse=3960616.0, rms=2.718 (0.000%) 034: dt: 0.1250, sse=3933254.2, rms=2.665 (0.000%) rms = 2.65, time step reduction 3 of 3 to 0.062... 035: dt: 0.1250, sse=3915809.2, rms=2.653 (0.000%) positioning took 1.0 minutes mean border=66.2, 962 (15) missing vertices, mean dist 0.1 [0.2 (%36.6)->0.3 (%63.4))] %72 local maxima, %13 large gradients and %10 min vals, 338 gradients ignored tol=1.0e-04, sigma=0.5, host=MacBo, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 averaging target values for 5 iterations... 000: dt: 0.0000, sse=4048952.0, rms=3.46 rms = 4.22, time step reduction 1 of 3 to 0.250... 036: dt: 0.2500, sse=3902689.2, rms=2.870 (0.000%) 037: dt: 0.2500, sse=3957088.8, rms=2.696 (0.000%) rms = 2.66, time step reduction 2 of 3 to 0.125... 038: dt: 0.2500, sse=4079159.8, rms=2.659 (0.000%) 039: dt: 0.1250, sse=3955042.2, rms=2.493 (0.000%) rms = 2.45, time step reduction 3 of 3 to 0.062... 040: dt: 0.1250, sse=3938044.0, rms=2.454 (0.000%) positioning took 0.5 minutes mean border=65.6, 1624 (14) missing vertices, mean dist 0.0 [0.2 (%45.7)->0.2 (%54.3))] %73 local maxima, %11 large gradients and %10 min vals, 299 gradients ignored tol=1.0e-04, sigma=0.2, host=MacBo, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing pial surface to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.pial... writing smoothed curvature to rh.curv.pial 000: dt: 0.0000, sse=3953703.8, rms=2.60 rms = 3.42, time step reduction 1 of 3 to 0.250... 041: dt: 0.2500, sse=3907147.8, rms=2.405 (0.000%) rms = 2.38, time step reduction 2 of 3 to 0.125... 042: dt: 0.2500, sse=4046384.0, rms=2.377 (0.000%) 043: dt: 0.1250, sse=3974342.2, rms=2.306 (0.000%) rms = 2.27, time step reduction 3 of 3 to 0.062... 044: dt: 0.1250, sse=3987710.2, rms=2.275 (0.000%) positioning took 0.4 minutes writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.curv.pial writing smoothed area to rh.area.pial writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.area.pial vertex spacing 0.96 +- 0.40 (0.05-->7.96) (max @ vno 102436 --> 102435) face area 0.37 +- 0.28 (0.00-->5.41) measuring cortical thickness... writing cortical thickness estimate to 'thickness' file. 0 of 132060 vertices processed 25000 of 132060 vertices processed 50000 of 132060 vertices processed 75000 of 132060 vertices processed 100000 of 132060 vertices processed 125000 of 132060 vertices processed 0 of 132060 vertices processed 25000 of 132060 vertices processed 50000 of 132060 vertices processed 75000 of 132060 vertices processed 100000 of 132060 vertices processed 125000 of 132060 vertices processed thickness calculation complete, 259:1015 truncations. 37705 vertices at 0 distance 94555 vertices at 1 distance 73459 vertices at 2 distance 31379 vertices at 3 distance 10350 vertices at 4 distance 3048 vertices at 5 distance 987 vertices at 6 distance 322 vertices at 7 distance 153 vertices at 8 distance 73 vertices at 9 distance 47 vertices at 10 distance 38 vertices at 11 distance 29 vertices at 12 distance 15 vertices at 13 distance 10 vertices at 14 distance 16 vertices at 15 distance 9 vertices at 16 distance 6 vertices at 17 distance 3 vertices at 18 distance 1 vertices at 19 distance 5 vertices at 20 distance writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.thickness positioning took 10.0 minutes #-------------------------------------------- #@# Smooth2 rh Fri Jan 22 11:35:48 EET 2016 \n mris_smooth -n 3 -nw ../surf/rh.white ../surf/rh.smoothwm \n /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts smoothing for 3 iterations smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation2 rh Fri Jan 22 11:35:54 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_inflate ../surf/rh.smoothwm ../surf/rh.inflated \n avg radius = 46.1 mm, total surface area = 74968 mm^2 writing inflated surface to ../surf/rh.inflated writing sulcal depths to ../surf/rh.sulc step 000: RMS=0.116 (target=0.015) step 005: RMS=0.081 (target=0.015) step 010: RMS=0.062 (target=0.015) step 015: RMS=0.051 (target=0.015) step 020: RMS=0.043 (target=0.015) step 025: RMS=0.037 (target=0.015) step 030: RMS=0.031 (target=0.015) step 035: RMS=0.027 (target=0.015) step 040: RMS=0.024 (target=0.015) step 045: RMS=0.022 (target=0.015) step 050: RMS=0.019 (target=0.015) step 055: RMS=0.018 (target=0.015) step 060: RMS=0.017 (target=0.015) inflation complete. inflation took 0.4 minutes \n mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 ../surf/rh.inflated \n normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 137 vertices thresholded to be in k1 ~ [-0.28 0.59], k2 ~ [-0.11 0.07] total integrated curvature = 0.592*4pi (7.437) --> 0 handles ICI = 1.5, FI = 9.2, variation=156.598 102 vertices thresholded to be in [-0.02 0.01] writing Gaussian curvature to ../surf/rh.inflated.K...thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.001 117 vertices thresholded to be in [-0.14 0.22] done. writing mean curvature to ../surf/rh.inflated.H...curvature mean = -0.017, std = 0.024 done. \n#----------------------------------------- #@# Curvature Stats rh Fri Jan 22 11:37:11 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf \n mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/rh.curv.stats -F smoothwm T40_OM_Post rh curv sulc \n Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/rh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ T40_OM_Post/rh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vertex faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 278 ] Gb_filter = 0 WARN: S lookup min: -0.312629 WARN: S explicit min: 0.000000 vertex = 790 #-------------------------------------------- #@# ASeg Stats Fri Jan 22 11:37:18 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post \n mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /Applications/freesurfer/ASegStatsLUT.txt --subject T40_OM_Post \n $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /Applications/freesurfer/ASegStatsLUT.txt --subject T40_OM_Post sysname Darwin hostname MacBook-Pro-di-Marco.local machine x86_64 user marco UseRobust 0 atlas_icv (eTIV) = 1401408 mm^3 (det: 1.390106 ) Computing euler number orig.nofix lheno = -128, rheno = -138 orig.nofix lhholes = 65, rhholes = 70 Loading mri/aseg.mgz Getting Brain Volume Statistics lhCtxGM: 194130.443 193510.000 diff= 620.4 pctdiff= 0.320 rhCtxGM: 198345.176 197702.000 diff= 643.2 pctdiff= 0.324 lhCtxWM: 211726.833 212153.500 diff= -426.7 pctdiff=-0.202 rhCtxWM: 218448.298 219121.500 diff= -673.2 pctdiff=-0.308 SubCortGMVol 48844.000 SupraTentVol 911154.750 (909836.000) diff=1318.750 pctdiff=0.145 SupraTentVolNotVent 872887.750 (871569.000) diff=1318.750 pctdiff=0.151 BrainSegVol 1028148.000 (1024370.000) diff=3778.000 pctdiff=0.367 BrainSegVolNotVent 984988.000 (984845.750) diff=142.250 pctdiff=0.014 BrainSegVolNotVent 984988.000 CerebellumVol 113113.000 VentChorVol 38267.000 3rd4th5thCSF 4893.000 CSFVol 1150.000, OptChiasmVol 271.000 MaskVol 1513194.000 Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 50 segmentations Computing statistics for each segmentation 3 4 Left-Lateral-Ventricle 16631 16631.000 4 5 Left-Inf-Lat-Vent 861 860.718 5 7 Left-Cerebellum-White-Matter 10215 10215.142 6 8 Left-Cerebellum-Cortex 46299 46298.945 7 10 Left-Thalamus-Proper 7112 7112.239 8 11 Left-Caudate 3697 3696.532 9 12 Left-Putamen 3842 3842.026 10 13 Left-Pallidum 1353 1352.807 11 14 3rd-Ventricle 1542 1542.378 12 15 4th-Ventricle 2361 2361.099 13 16 Brain-Stem 18770 18770.141 14 17 Left-Hippocampus 3705 3705.158 15 18 Left-Amygdala 1281 1280.841 16 24 CSF 1081 1081.099 17 26 Left-Accumbens-area 427 427.313 18 28 Left-VentralDC 3172 3172.460 19 30 Left-vessel 167 167.096 20 31 Left-choroid-plexus 1898 1897.961 23 43 Right-Lateral-Ventricle 16110 16109.813 24 44 Right-Inf-Lat-Vent 489 488.676 25 46 Right-Cerebellum-White-Matter 10449 10449.361 26 47 Right-Cerebellum-Cortex 47697 47696.559 27 49 Right-Thalamus-Proper 5853 5853.278 28 50 Right-Caudate 3384 3384.291 29 51 Right-Putamen 3677 3677.215 30 52 Right-Pallidum 1359 1359.228 31 53 Right-Hippocampus 3743 3742.920 32 54 Right-Amygdala 1277 1276.785 33 58 Right-Accumbens-area 349 349.172 34 60 Right-VentralDC 3368 3367.892 35 62 Right-vessel 110 109.809 36 63 Right-choroid-plexus 2184 2184.151 37 72 5th-Ventricle 0 0.000 38 77 WM-hypointensities 1508 1508.348 39 78 Left-WM-hypointensities 0 0.000 40 79 Right-WM-hypointensities 0 0.000 41 80 non-WM-hypointensities 30 30.302 42 81 Left-non-WM-hypointensities 0 0.000 43 82 Right-non-WM-hypointensities 0 0.000 44 85 Optic-Chiasm 243 242.805 45 251 CC_Posterior 989 988.787 46 252 CC_Mid_Posterior 304 303.817 47 253 CC_Central 333 332.722 48 254 CC_Mid_Anterior 373 373.279 49 255 CC_Anterior 650 650.473 Reporting on 45 segmentations mri_segstats done #------------------------------------------ Started at Fri Jan 22 10:00:16 EET 2016 Ended at Fri Jan 22 11:41:15 EET 2016 #@#%# recon-all-run-time-hours 1.683 recon-all -s T40_OM_Post finished without error at Fri Jan 22 11:41:15 EET 2016 \n\n New invocation of recon-all \n\n Fri Jan 22 11:41:16 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post /Applications/freesurfer/bin/recon-all -autorecon3 -s T40_OM_Post subjid T40_OM_Post setenv SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Actual FREESURFER_HOME /Applications/freesurfer build-stamp.txt: freesurfer-Darwin-lion-stable-pub-v5.3.0 Darwin MacBook-Pro-di-Marco.local 13.3.0 Darwin Kernel Version 13.3.0: Tue Jun 3 21:27:35 PDT 2014; root:xnu-2422.110.17~1/RELEASE_X86_64 x86_64 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 709 PhysMem: 4939M used (1325M wired), 481M unused. ######################################## program versions used $Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 nicks Exp $ $Id: mri_motion_correct.fsl,v 1.14 2011/03/02 20:16:39 nicks Exp $ mri_convert -all-info ProgramName: mri_convert ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:17-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 FLIRT version 5.5 $Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks Exp $ mri_convert --version stable5 ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:17-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 Program nu_correct, built from: Package MNI N3, version 1.10, compiled by nicks@aspasia.local (i686-apple-darwin10.2.0) on 2010-02-26 at 14:19:30 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:18-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:18-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_normalize.c,v 1.73.2.1 2012/10/17 19:11:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_watershed.cpp,v 1.96.2.1 2011/11/08 22:18:44 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_segment.c,v 1.40 2011/03/02 00:04:24 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_label2label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:19-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_label2label.c,v 1.40.2.2 2013/04/02 16:26:15 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:20-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_em_register.c,v 1.84.2.3 2013/02/09 00:49:26 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:20-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_normalize.c,v 1.52.2.2 2012/10/17 19:11:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:20-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_register.c,v 1.78.2.3 2013/02/09 00:42:20 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:20-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_label.c,v 1.96.2.1 2012/08/28 22:11:20 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:20-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_pretess.c,v 1.20 2011/03/02 00:04:23 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_fill.c,v 1.118 2011/03/16 21:23:49 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_concatenate_lta ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_concatenate_lta.c,v 1.10 2011/03/16 21:23:48 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_smooth.c,v 1.28 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_inflate.c,v 1.43 2011/03/02 00:04:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:21-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:22-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:22-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:22-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:22-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_euler_number.c,v 1.8.2.2 2013/01/14 22:40:07 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:22-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:22-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:23-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_volmask.cpp,v 1.25 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:23-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_anatomical_stats.c,v 1.72 2011/03/02 00:04:26 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:23-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mrisp_paint.c,v 1.11 2011/03/02 00:04:35 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:23-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_curvature_stats.c,v 1.64 2011/03/02 00:04:30 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:23-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_calc.c,v 1.37.2.8 2013/01/28 17:05:17 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ ProgramName: mri_robust_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:23-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:24-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:24-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:24-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_or.c,v 1.3 2011/03/02 00:04:13 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:24-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-09:41:24-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ####################################### GCADIR /Applications/freesurfer/average GCA RB_all_2008-03-26.gca GCASkull RB_all_withskull_2008-03-26.gca AvgCurvTif average.curvature.filled.buckner40.tif GCSDIR /Applications/freesurfer/average GCS curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ####################################### INFO: current FREESURFER_HOME does not match that of previous processing. Current: /Applications/freesurfer Previous: /cdrom/Marco/freesurfer \n#----------------------------------------- #@# Curvature Stats lh Fri Jan 22 11:41:25 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf \n mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/lh.curv.stats -F smoothwm T40_OM_Post lh curv sulc \n Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/lh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ T40_OM_Post/lh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vertex faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 234 ] Gb_filter = 0 WARN: S lookup min: -0.447552 WARN: S explicit min: 0.000000 vertex = 218 #-------------------------------------------- #@# Sphere lh Fri Jan 22 11:41:32 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_sphere -seed 1234 ../surf/lh.inflated ../surf/lh.sphere \n setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... scaling brain by 0.330... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=MacBo, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 1234 -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %19.58 pass 1: epoch 2 of 3 starting distance error %19.59 unfolding complete - removing small folds... starting distance error %19.49 removing remaining folds... final distance error %19.51 MRISunfold() return, current seed 1234 writing spherical brain to ../surf/lh.sphere spherical transformation took 0.45 hours #-------------------------------------------- #@# Surf Reg lh Fri Jan 22 12:08:18 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_register -curv ../surf/lh.sphere /Applications/freesurfer/average/lh.average.curvature.filled.buckner40.tif ../surf/lh.sphere.reg \n using smoothwm curvature for final alignment $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading surface from ../surf/lh.sphere... reading template parameterization from /Applications/freesurfer/average/lh.average.curvature.filled.buckner40.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=MacBo, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 0 randomSeed 0 tol=5.0e-01, sigma=0.0, host=MacBo, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading lh.sulc curvature mean = -0.000, std = 0.589 curvature mean = 0.027, std = 0.937 curvature mean = 0.030, std = 0.873 Starting MRISrigidBodyAlignGlobal() d=64.00 min @ (0.00, -16.00, 0.00) sse = 305146.8, tmin=0.6219 d=32.00 min @ (8.00, 8.00, -8.00) sse = 214978.2, tmin=1.2447 d=16.00 min @ (-4.00, 0.00, 4.00) sse = 186912.5, tmin=1.8793 d=8.00 min @ (2.00, 2.00, -2.00) sse = 186278.4, tmin=2.5277 d=4.00 min @ (-1.00, -1.00, 1.00) sse = 182783.7, tmin=3.1947 d=1.00 min @ (0.25, 0.00, 0.00) sse = 182678.6, tmin=4.5268 tol=1.0e+00, sigma=0.5, host=MacBo, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization MRISrigidBodyAlignGlobal() done 5.19 min curvature mean = -0.010, std = 0.960 curvature mean = 0.011, std = 0.948 curvature mean = -0.015, std = 0.972 curvature mean = 0.005, std = 0.978 curvature mean = -0.018, std = 0.975 curvature mean = 0.001, std = 0.990 2 Reading smoothwm curvature mean = -0.039, std = 0.328 curvature mean = 0.002, std = 0.067 curvature mean = 0.076, std = 0.307 curvature mean = 0.002, std = 0.079 curvature mean = 0.041, std = 0.482 curvature mean = 0.002, std = 0.085 curvature mean = 0.023, std = 0.613 curvature mean = 0.001, std = 0.088 curvature mean = 0.009, std = 0.721 MRISregister() return, current seed 0 writing registered surface to ../surf/lh.sphere.reg... expanding nbhd size to 1 #-------------------------------------------- #@# Jacobian white lh Fri Jan 22 12:24:01 EET 2016 \n mris_jacobian ../surf/lh.white ../surf/lh.sphere.reg ../surf/lh.jacobian_white \n reading surface from ../surf/lh.white... writing curvature file ../surf/lh.jacobian_white #-------------------------------------------- #@# AvgCurv lh Fri Jan 22 12:24:04 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mrisp_paint -a 5 /Applications/freesurfer/average/lh.average.curvature.filled.buckner40.tif#6 ../surf/lh.sphere.reg ../surf/lh.avg_curv \n averaging curvature patterns 5 times... reading surface from ../surf/lh.sphere.reg... reading template parameterization from /Applications/freesurfer/average/lh.average.curvature.filled.buckner40.tif... writing curvature file to ../surf/lh.avg_curv... #----------------------------------------- #@# Cortical Parc lh Fri Jan 22 12:24:06 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 T40_OM_Post lh ../surf/lh.sphere.reg /Applications/freesurfer/average/lh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ../label/lh.aparc.annot \n setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading atlas from /Applications/freesurfer/average/lh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs... reading color table from GCSA file.... average std = 1.0 using min determinant for regularization = 0.011 0 singular and 384 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 1209 labels changed using aseg relabeling using gibbs priors... 000: 2931 changed, 130269 examined... 001: 662 changed, 12399 examined... 002: 141 changed, 3663 examined... 003: 62 changed, 870 examined... 004: 21 changed, 335 examined... 005: 6 changed, 122 examined... 006: 4 changed, 33 examined... 007: 0 changed, 15 examined... 233 labels changed using aseg 000: 116 total segments, 65 labels (256 vertices) changed 001: 51 total segments, 8 labels (19 vertices) changed 002: 43 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 35 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1256 vertices marked for relabeling... 1256 labels changed in reclassification. writing output to ../label/lh.aparc.annot... classification took 0 minutes and 39 seconds. #-------------------------------------------- #@# Make Pial Surf lh Fri Jan 22 12:24:45 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_make_surfaces -white NOWRITE -mgz -T1 brain.finalsurfs T40_OM_Post lh \n -white NOWRITE indicates that white, curv, area, and cortex.label files will not be written... INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/filled.mgz... reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/brain.finalsurfs.mgz... reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... 13615 bright wm thresholded. 2587 bright non-wm voxels segmented. reading original surface position from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.orig... computing class statistics... border white: 274904 voxels (1.64%) border gray 286178 voxels (1.71%) WM (98.0): 98.5 +- 6.4 [70.0 --> 110.0] GM (89.0) : 86.3 +- 11.8 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 71.2 (was 70) setting MAX_BORDER_WHITE to 109.4 (was 105) setting MIN_BORDER_WHITE to 83.0 (was 85) setting MAX_CSF to 59.4 (was 40) setting MAX_GRAY to 96.6 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 77.1 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 47.6 (was 40) smoothing contralateral hemisphere... using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=103, GM=83 mean inside = 97.3, mean outside = 84.5 smoothing surface for 5 iterations... reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) repositioning cortical surface to gray/white boundary reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/aseg.mgz... smoothing T1 volume with sigma = 2.000 vertex spacing 0.81 +- 0.23 (0.03-->3.88) (max @ vno 128717 --> 128786) face area 0.28 +- 0.13 (0.00-->3.99) mean absolute distance = 0.93 +- 1.24 5062 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... deleting segment 1 with 584 points - only 0.00% unknown mean border=90.4, 170 (170) missing vertices, mean dist 0.1 [1.1 (%38.1)->0.8 (%61.9))] %31 local maxima, %64 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=MacBo, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.88 +- 0.27 (0.09-->4.20) (max @ vno 128717 --> 128786) face area 0.28 +- 0.14 (0.00-->3.46) mean absolute distance = 0.56 +- 0.93 5295 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3807105.0, rms=7.52 001: dt: 0.5000, sse=4758317.0, rms=5.239 (0.000%) 002: dt: 0.5000, sse=4849440.0, rms=3.809 (0.000%) 003: dt: 0.5000, sse=5012846.5, rms=2.986 (0.000%) 004: dt: 0.5000, sse=5092869.0, rms=2.577 (0.000%) 005: dt: 0.5000, sse=5156417.5, rms=2.361 (0.000%) 006: dt: 0.5000, sse=5165500.5, rms=2.262 (0.000%) 007: dt: 0.5000, sse=5217996.5, rms=2.197 (0.000%) rms = 2.15, time step reduction 1 of 3 to 0.250... 008: dt: 0.5000, sse=5215837.0, rms=2.153 (0.000%) 009: dt: 0.2500, sse=3812111.5, rms=1.775 (0.000%) 010: dt: 0.2500, sse=3661889.5, rms=1.714 (0.000%) rms = 1.70, time step reduction 2 of 3 to 0.125... 011: dt: 0.2500, sse=3613127.5, rms=1.702 (0.000%) rms = 1.68, time step reduction 3 of 3 to 0.062... 012: dt: 0.1250, sse=3573348.8, rms=1.684 (0.000%) positioning took 1.2 minutes inhibiting deformation at non-cortical midline structures... deleting segment 3 with 444 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 4 with 3 points - only 33.33% unknown deleting segment 8 with 6 points - only 0.00% unknown mean border=92.1, 206 (90) missing vertices, mean dist -0.3 [0.7 (%59.5)->0.3 (%40.5))] %48 local maxima, %47 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=MacBo, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.87 +- 0.26 (0.01-->4.15) (max @ vno 128717 --> 128786) face area 0.33 +- 0.17 (0.00-->4.09) mean absolute distance = 0.45 +- 0.58 4562 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3846243.0, rms=3.21 013: dt: 0.5000, sse=4161026.8, rms=2.134 (0.000%) 014: dt: 0.5000, sse=4579725.0, rms=1.825 (0.000%) 015: dt: 0.5000, sse=4574646.0, rms=1.755 (0.000%) rms = 1.75, time step reduction 1 of 3 to 0.250... 016: dt: 0.5000, sse=4874114.0, rms=1.747 (0.000%) 017: dt: 0.2500, sse=3965645.5, rms=1.457 (0.000%) rms = 1.42, time step reduction 2 of 3 to 0.125... 018: dt: 0.2500, sse=3838009.5, rms=1.422 (0.000%) rms = 1.41, time step reduction 3 of 3 to 0.062... 019: dt: 0.1250, sse=3797540.8, rms=1.411 (0.000%) positioning took 0.7 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 294 points - only 0.00% unknown deleting segment 1 with 145 points - only 0.00% unknown deleting segment 2 with 5 points - only 20.00% unknown removing 3 vertex label from ripped group deleting segment 3 with 3 points - only 0.00% unknown mean border=94.3, 182 (70) missing vertices, mean dist -0.3 [0.5 (%68.3)->0.3 (%31.7))] %70 local maxima, %25 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=MacBo, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.86 +- 0.26 (0.06-->4.05) (max @ vno 128717 --> 128786) face area 0.32 +- 0.16 (0.00-->3.93) mean absolute distance = 0.33 +- 0.44 4089 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3975844.5, rms=3.15 020: dt: 0.5000, sse=4129590.0, rms=1.853 (0.000%) 021: dt: 0.5000, sse=4592809.5, rms=1.603 (0.000%) rms = 1.60, time step reduction 1 of 3 to 0.250... 022: dt: 0.5000, sse=4593581.0, rms=1.599 (0.000%) 023: dt: 0.2500, sse=4064244.2, rms=1.320 (0.000%) rms = 1.29, time step reduction 2 of 3 to 0.125... 024: dt: 0.2500, sse=3940351.8, rms=1.288 (0.000%) rms = 1.28, time step reduction 3 of 3 to 0.062... 025: dt: 0.1250, sse=3886763.8, rms=1.280 (0.000%) positioning took 0.6 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 314 points - only 0.00% unknown deleting segment 1 with 169 points - only 0.00% unknown removing 4 vertex label from ripped group deleting segment 3 with 6 points - only 0.00% unknown mean border=95.2, 190 (62) missing vertices, mean dist -0.1 [0.4 (%59.1)->0.3 (%40.9))] %80 local maxima, %15 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=MacBo, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 repositioning cortical surface to gray/csf boundary. smoothing T1 volume with sigma = 2.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=3910071.0, rms=1.77 026: dt: 0.5000, sse=4729289.5, rms=1.157 (0.000%) rms = 1.39, time step reduction 1 of 3 to 0.250... 027: dt: 0.2500, sse=4412485.0, rms=1.052 (0.000%) rms = 1.06, time step reduction 2 of 3 to 0.125... rms = 1.04, time step reduction 3 of 3 to 0.062... 028: dt: 0.1250, sse=4378759.0, rms=1.043 (0.000%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... deleting segment 1 with 46 points - only 0.00% unknown smoothing surface for 5 iterations... mean border=70.6, 213 (213) missing vertices, mean dist 2.1 [0.8 (%0.0)->2.4 (%100.0))] %42 local maxima, %40 large gradients and %13 min vals, 629 gradients ignored tol=1.0e-04, sigma=2.0, host=MacBo, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 1.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=18322482.0, rms=25.43 001: dt: 0.5000, sse=15421085.0, rms=22.985 (0.000%) 002: dt: 0.5000, sse=13007484.0, rms=20.763 (0.000%) 003: dt: 0.5000, sse=11175590.0, rms=18.816 (0.000%) 004: dt: 0.5000, sse=9971888.0, rms=17.079 (0.000%) 005: dt: 0.5000, sse=9093890.0, rms=15.466 (0.000%) 006: dt: 0.5000, sse=8399887.0, rms=13.923 (0.000%) 007: dt: 0.5000, sse=7761442.0, rms=12.352 (0.000%) 008: dt: 0.5000, sse=7249133.5, rms=10.763 (0.000%) 009: dt: 0.5000, sse=6868840.0, rms=9.211 (0.000%) 010: dt: 0.5000, sse=6642880.0, rms=7.815 (0.000%) 011: dt: 0.5000, sse=6557629.0, rms=6.704 (0.000%) 012: dt: 0.5000, sse=6581837.0, rms=5.958 (0.000%) 013: dt: 0.5000, sse=6654005.5, rms=5.503 (0.000%) 014: dt: 0.5000, sse=6692458.0, rms=5.217 (0.000%) 015: dt: 0.5000, sse=6712711.5, rms=5.014 (0.000%) 016: dt: 0.5000, sse=6726302.0, rms=4.867 (0.000%) 017: dt: 0.5000, sse=6751850.0, rms=4.771 (0.000%) 018: dt: 0.5000, sse=6758107.5, rms=4.691 (0.000%) rms = 4.65, time step reduction 1 of 3 to 0.250... 019: dt: 0.5000, sse=6806061.0, rms=4.651 (0.000%) 020: dt: 0.2500, sse=4301142.0, rms=3.459 (0.000%) 021: dt: 0.2500, sse=4008003.8, rms=3.114 (0.000%) 022: dt: 0.2500, sse=3835591.5, rms=3.033 (0.000%) rms = 2.98, time step reduction 2 of 3 to 0.125... 023: dt: 0.2500, sse=3783938.8, rms=2.983 (0.000%) 024: dt: 0.1250, sse=3510322.2, rms=2.722 (0.000%) rms = 2.69, time step reduction 3 of 3 to 0.062... 025: dt: 0.1250, sse=3468877.0, rms=2.686 (0.000%) positioning took 2.2 minutes mean border=67.2, 440 (24) missing vertices, mean dist 0.2 [0.2 (%33.9)->0.4 (%66.1))] %65 local maxima, %22 large gradients and % 8 min vals, 259 gradients ignored tol=1.0e-04, sigma=1.0, host=MacBo, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 averaging target values for 5 iterations... 000: dt: 0.0000, sse=4293212.5, rms=5.68 026: dt: 0.5000, sse=4572955.5, rms=4.610 (0.000%) rms = 4.67, time step reduction 1 of 3 to 0.250... 027: dt: 0.2500, sse=4074681.0, rms=3.600 (0.000%) 028: dt: 0.2500, sse=4033872.0, rms=3.200 (0.000%) 029: dt: 0.2500, sse=3998515.5, rms=3.054 (0.000%) rms = 3.01, time step reduction 2 of 3 to 0.125... 030: dt: 0.2500, sse=4021708.0, rms=3.007 (0.000%) 031: dt: 0.1250, sse=3798715.5, rms=2.731 (0.000%) 032: dt: 0.1250, sse=3765682.2, rms=2.679 (0.000%) rms = 2.67, time step reduction 3 of 3 to 0.062... 033: dt: 0.1250, sse=3748864.0, rms=2.670 (0.000%) positioning took 0.8 minutes mean border=65.5, 680 (20) missing vertices, mean dist 0.1 [0.2 (%36.4)->0.3 (%63.6))] %74 local maxima, %13 large gradients and % 8 min vals, 248 gradients ignored tol=1.0e-04, sigma=0.5, host=MacBo, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 averaging target values for 5 iterations... 000: dt: 0.0000, sse=3895713.0, rms=3.56 rms = 4.34, time step reduction 1 of 3 to 0.250... 034: dt: 0.2500, sse=3750466.5, rms=2.917 (0.000%) 035: dt: 0.2500, sse=3797632.5, rms=2.723 (0.000%) 036: dt: 0.2500, sse=3900370.8, rms=2.669 (0.000%) rms = 2.67, time step reduction 2 of 3 to 0.125... 037: dt: 0.1250, sse=3845819.5, rms=2.598 (0.000%) 038: dt: 0.1250, sse=3788896.5, rms=2.494 (0.000%) rms = 2.48, time step reduction 3 of 3 to 0.062... 039: dt: 0.1250, sse=3769003.0, rms=2.477 (0.000%) positioning took 0.6 minutes mean border=64.9, 1382 (19) missing vertices, mean dist 0.0 [0.2 (%46.0)->0.2 (%54.0))] %76 local maxima, %11 large gradients and % 8 min vals, 237 gradients ignored tol=1.0e-04, sigma=0.2, host=MacBo, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing pial surface to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.pial... writing smoothed curvature to lh.curv.pial 000: dt: 0.0000, sse=3786635.5, rms=2.64 rms = 3.48, time step reduction 1 of 3 to 0.250... 040: dt: 0.2500, sse=3737958.2, rms=2.426 (0.000%) rms = 2.38, time step reduction 2 of 3 to 0.125... 041: dt: 0.2500, sse=3872890.2, rms=2.383 (0.000%) 042: dt: 0.1250, sse=3803956.5, rms=2.314 (0.000%) rms = 2.28, time step reduction 3 of 3 to 0.062... 043: dt: 0.1250, sse=3817339.5, rms=2.284 (0.000%) positioning took 0.4 minutes writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.curv.pial writing smoothed area to lh.area.pial writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.area.pial vertex spacing 0.96 +- 0.40 (0.04-->7.16) (max @ vno 98857 --> 97997) face area 0.37 +- 0.28 (0.00-->5.17) measuring cortical thickness... writing cortical thickness estimate to 'thickness' file. 0 of 130269 vertices processed 25000 of 130269 vertices processed 50000 of 130269 vertices processed 75000 of 130269 vertices processed 100000 of 130269 vertices processed 125000 of 130269 vertices processed 0 of 130269 vertices processed 25000 of 130269 vertices processed 50000 of 130269 vertices processed 75000 of 130269 vertices processed 100000 of 130269 vertices processed 125000 of 130269 vertices processed thickness calculation complete, 118:541 truncations. 38777 vertices at 0 distance 93209 vertices at 1 distance 72830 vertices at 2 distance 30365 vertices at 3 distance 9687 vertices at 4 distance 2859 vertices at 5 distance 922 vertices at 6 distance 300 vertices at 7 distance 95 vertices at 8 distance 46 vertices at 9 distance 24 vertices at 10 distance 21 vertices at 11 distance 12 vertices at 12 distance 10 vertices at 13 distance 7 vertices at 14 distance 15 vertices at 15 distance 5 vertices at 16 distance 7 vertices at 17 distance 8 vertices at 18 distance 4 vertices at 19 distance 5 vertices at 20 distance writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.thickness positioning took 9.0 minutes #-------------------------------------------- #@# Surf Volume lh Fri Jan 22 12:33:48 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf \n mris_calc -o lh.area.mid lh.area add lh.area.pial \n Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] \n mris_calc -o lh.area.mid lh.area.mid div 2 \n Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] \n mris_calc -o lh.volume lh.area.mid mul lh.thickness \n Saving result to 'lh.volume' (type = MRI_CURV_FILE) [ ok ] #----------------------------------------- #@# WM/GM Contrast lh Fri Jan 22 12:33:49 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n pctsurfcon --s T40_OM_Post --lh-only \n Log file is /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts/pctsurfcon.log Fri Jan 22 12:33:50 EET 2016 setenv SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects cd /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts /Applications/freesurfer/bin/pctsurfcon $Id: pctsurfcon,v 1.11.2.1 2011/11/10 20:37:10 nicks Exp $ Darwin MacBook-Pro-di-Marco.local 13.3.0 Darwin Kernel Version 13.3.0: Tue Jun 3 21:27:35 PDT 2014; root:xnu-2422.110.17~1/RELEASE_X86_64 x86_64 FREESURFER_HOME /Applications/freesurfer mri_vol2surf --mov /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --projdist -1 --o /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.28968/lh.wm.mgh --regheader T40_OM_Post --cortex srcvol = /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/orig.mgz as target reference. Loading label /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/lh.cortex.label Reading surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 81592 Masking with /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/lh.cortex.label Writing to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.28968/lh.wm.mgh Dim: 130269 1 1 mri_vol2surf --mov /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --o /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.28968/lh.gm.mgh --projfrac 0.3 --regheader T40_OM_Post --cortex srcvol = /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/orig.mgz as target reference. Loading label /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/lh.cortex.label Reading surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Done reading source surface Reading thickness /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.thickness Done Mapping Source Volume onto Source Subject Surface 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 97139 Masking with /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/lh.cortex.label Writing to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.28968/lh.gm.mgh Dim: 130269 1 1 mri_concat /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.28968/lh.wm.mgh /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.28968/lh.gm.mgh --paired-diff-norm --mul 100 --o /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.w-g.pct.mgh mri_segstats --in /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.w-g.pct.mgh --annot T40_OM_Post lh aparc --sum /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/stats/lh.w-g.pct.stats --snr $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --in /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.w-g.pct.mgh --annot T40_OM_Post lh aparc --sum /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/stats/lh.w-g.pct.stats --snr sysname Darwin hostname MacBook-Pro-di-Marco.local machine x86_64 user marco UseRobust 0 Constructing seg from annotation Reading annotation reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Seg base 1000 Loading /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.w-g.pct.mgh Vertex Area is 0.619796 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation 0 1000 unknown 0 0.000 1 1001 bankssts 1242 870.786 2 1002 caudalanteriorcingulate 1165 742.606 3 1003 caudalmiddlefrontal 3808 2239.147 4 1004 corpuscallosum 0 0.000 5 1005 cuneus 2101 1185.257 6 1006 entorhinal 603 399.088 7 1007 fusiform 3904 2539.666 8 1008 inferiorparietal 5949 3807.858 9 1009 inferiortemporal 4808 3208.914 10 1010 isthmuscingulate 1510 904.392 11 1011 lateraloccipital 7549 4429.070 12 1012 lateralorbitofrontal 3552 2305.488 13 1013 lingual 3734 2312.275 14 1014 medialorbitofrontal 2757 1708.215 15 1015 middletemporal 3919 2559.229 16 1016 parahippocampal 895 590.123 17 1017 paracentral 2352 1354.329 18 1018 parsopercularis 2779 1698.046 19 1019 parsorbitalis 857 534.929 20 1020 parstriangularis 1523 1008.707 21 1021 pericalcarine 1856 1202.241 22 1022 postcentral 6428 3741.913 23 1023 posteriorcingulate 1581 1026.056 24 1024 precentral 7442 4404.931 25 1025 precuneus 5624 3647.379 26 1026 rostralanteriorcingulate 1262 779.565 27 1027 rostralmiddlefrontal 8601 5135.885 28 1028 superiorfrontal 10152 6196.535 29 1029 superiorparietal 8380 4994.098 30 1030 superiortemporal 5144 3310.501 31 1031 supramarginal 5762 3630.605 32 1032 frontalpole 267 157.481 33 1033 temporalpole 679 449.638 34 1034 transversetemporal 729 384.187 35 1035 insula 3291 2057.572 Reporting on 34 segmentations mri_segstats done Cleaning up #----------------------------------------- #@# Parcellation Stats lh Fri Jan 22 12:33:57 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_anatomical_stats -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab T40_OM_Post lh white \n computing statistics for each annotation in ../label/lh.aparc.annot. reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white... reading input pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.pial... reading input white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1242 871 1775 2.147 0.397 0.118 0.035 11 1.9 bankssts 1165 743 2286 2.858 0.569 0.170 0.072 32 3.9 caudalanteriorcingulate 3808 2239 5445 2.334 0.488 0.149 0.142 247 31.0 caudalmiddlefrontal 2101 1185 2251 1.744 0.433 0.149 0.072 37 6.9 cuneus 603 399 1601 2.795 1.042 0.197 0.114 19 3.2 entorhinal 3904 2540 6986 2.350 0.595 0.168 0.097 148 14.3 fusiform 5949 3808 10038 2.354 0.538 0.148 0.056 99 13.5 inferiorparietal 4808 3209 11040 2.703 0.674 0.165 0.102 155 20.6 inferiortemporal 1510 904 2134 2.239 0.700 0.158 0.100 51 6.9 isthmuscingulate 7549 4429 9953 2.074 0.513 0.153 0.070 155 22.1 lateraloccipital 3552 2305 6246 2.406 0.701 0.191 0.322 267 19.3 lateralorbitofrontal 3734 2312 4809 1.894 0.597 0.167 0.103 112 14.5 lingual 2757 1708 4508 2.362 0.788 0.171 0.110 83 12.2 medialorbitofrontal 3919 2559 7782 2.592 0.582 0.142 0.058 68 9.6 middletemporal 895 590 1921 2.696 0.870 0.147 0.063 15 2.4 parahippocampal 2352 1354 3391 2.274 0.620 0.143 0.082 89 8.6 paracentral 2779 1698 4346 2.295 0.533 0.140 0.086 166 10.7 parsopercularis 857 535 1667 2.426 0.655 0.216 0.258 572 8.4 parsorbitalis 1523 1009 2678 2.311 0.487 0.140 0.062 21 4.1 parstriangularis 1856 1202 1870 1.646 0.504 0.177 0.096 56 7.9 pericalcarine 6428 3742 7726 1.906 0.539 0.143 0.075 136 20.4 postcentral 1581 1026 2757 2.375 0.667 0.168 0.080 45 5.0 posteriorcingulate 7442 4405 10402 2.241 0.707 0.152 0.136 210 34.7 precentral 5624 3647 8768 2.257 0.622 0.150 0.066 97 14.6 precuneus 1262 780 2672 2.858 0.775 0.173 0.275 256 6.8 rostralanteriorcingulate 8601 5136 12487 2.129 0.516 0.150 0.088 258 33.5 rostralmiddlefrontal 10152 6197 17136 2.448 0.634 0.154 0.108 431 44.7 superiorfrontal 8380 4994 12007 2.208 0.570 0.137 0.080 196 28.9 superiorparietal 5144 3311 9313 2.432 0.629 0.142 0.259 213 21.2 superiortemporal 5762 3631 8950 2.221 0.561 0.150 0.065 117 16.6 supramarginal 267 157 629 2.726 0.398 0.194 0.091 10 1.1 frontalpole 679 450 2029 3.017 0.884 0.192 0.120 22 3.4 temporalpole 729 384 828 2.024 0.344 0.147 0.087 14 2.1 transversetemporal 3291 2058 6014 2.732 0.831 0.160 0.291 229 56.1 insula #----------------------------------------- #@# Cortical Parc 2 lh Fri Jan 22 12:34:12 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 T40_OM_Post lh ../surf/lh.sphere.reg /Applications/freesurfer/average/lh.destrieux.simple.2009-07-29.gcs ../label/lh.aparc.a2009s.annot \n setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading atlas from /Applications/freesurfer/average/lh.destrieux.simple.2009-07-29.gcs... reading color table from GCSA file.... average std = 3.9 0.2 using min determinant for regularization = 0.000 0 singular and 1066 ill-conditioned covariance matrices regularized input 1: CURVATURE FILE, flags 0, avgs 0, name sulc input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 61 labels changed using aseg relabeling using gibbs priors... 000: 8572 changed, 130269 examined... 001: 2119 changed, 33115 examined... 002: 712 changed, 10844 examined... 003: 296 changed, 3864 examined... 004: 115 changed, 1647 examined... 005: 44 changed, 649 examined... 006: 11 changed, 249 examined... 007: 7 changed, 67 examined... 008: 2 changed, 39 examined... 009: 3 changed, 10 examined... 010: 0 changed, 12 examined... 23 labels changed using aseg 000: 278 total segments, 192 labels (1966 vertices) changed 001: 97 total segments, 12 labels (81 vertices) changed 002: 86 total segments, 1 labels (1 vertices) changed 003: 85 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 140 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... 679 vertices marked for relabeling... 679 labels changed in reclassification. writing output to ../label/lh.aparc.a2009s.annot... classification took 0 minutes and 49 seconds. #----------------------------------------- #@# Parcellation Stats 2 lh Fri Jan 22 12:35:01 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_anatomical_stats -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.a2009s.stats -b -a ../label/lh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab T40_OM_Post lh white \n computing statistics for each annotation in ../label/lh.aparc.a2009s.annot. reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white... reading input pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.pial... reading input white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 76 entries read (originally /autofs/space/birn_044/users/christophe_atlas_rebuild//scripts_2008/Simple_surface_labels2009.txt) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1178 784 2030 2.254 0.501 0.163 0.066 26 3.5 G_and_S_frontomargin 1577 969 2389 2.194 0.547 0.161 0.081 33 5.0 G_and_S_occipital_inf 1852 1034 2928 2.290 0.710 0.149 0.080 52 6.3 G_and_S_paracentral 1630 960 2394 2.188 0.561 0.158 0.096 36 5.5 G_and_S_subcentral 700 443 1520 2.474 0.507 0.183 0.099 23 2.9 G_and_S_transv_frontopol 2623 1670 4370 2.394 0.692 0.160 0.165 277 10.5 G_and_S_cingul-Ant 1139 793 2264 2.696 0.591 0.141 0.058 18 2.9 G_and_S_cingul-Mid-Ant 1225 825 2190 2.442 0.607 0.138 0.059 26 2.6 G_and_S_cingul-Mid-Post 487 302 944 2.538 0.472 0.170 0.081 9 1.8 G_cingul-Post-dorsal 255 156 356 2.055 0.684 0.190 0.179 11 2.5 G_cingul-Post-ventral 1961 1038 2211 1.793 0.475 0.168 0.102 51 9.5 G_cuneus 1765 1021 2963 2.358 0.560 0.153 0.095 62 6.8 G_front_inf-Opercular 275 163 621 2.743 0.486 0.206 0.143 10 1.7 G_front_inf-Orbital 939 597 1969 2.479 0.455 0.154 0.071 15 2.8 G_front_inf-Triangul 5163 2743 8131 2.333 0.509 0.161 0.166 398 45.0 G_front_middle 7427 4255 13202 2.550 0.664 0.166 0.136 447 41.7 G_front_sup 466 266 969 2.818 0.634 0.186 0.199 28 4.5 G_Ins_lg_and_S_cent_ins 774 409 1923 3.265 0.886 0.234 0.937 177 46.7 G_insular_short 2163 1258 4099 2.483 0.456 0.157 0.069 58 6.2 G_occipital_middle 1441 787 2064 2.228 0.560 0.146 0.091 59 5.7 G_occipital_sup 1278 766 2495 2.535 0.493 0.174 0.085 40 4.7 G_oc-temp_lat-fusifor 2769 1592 3631 1.928 0.615 0.180 0.127 118 13.3 G_oc-temp_med-Lingual 1212 791 2981 2.790 0.897 0.176 0.093 31 5.0 G_oc-temp_med-Parahip 2439 1534 4904 2.473 0.689 0.210 0.485 798 20.0 G_orbital 2440 1402 4556 2.551 0.545 0.160 0.078 59 7.7 G_pariet_inf-Angular 2985 1838 5210 2.337 0.582 0.162 0.074 78 8.8 G_pariet_inf-Supramar 3429 1921 5890 2.441 0.568 0.142 0.113 99 16.3 G_parietal_sup 2536 1303 2976 1.932 0.525 0.148 0.081 65 9.2 G_postcentral 2980 1494 4367 2.443 0.732 0.156 0.241 142 21.5 G_precentral 2899 1776 5373 2.497 0.530 0.168 0.086 67 9.5 G_precuneus 985 607 1971 2.521 0.642 0.191 0.128 36 4.4 G_rectus 302 185 553 3.083 1.059 0.138 0.124 7 0.8 G_subcallosal 552 272 650 2.062 0.322 0.147 0.099 12 1.7 G_temp_sup-G_T_transv 2066 1288 4907 2.702 0.576 0.173 0.570 178 14.6 G_temp_sup-Lateral 427 268 866 3.146 0.823 0.140 0.060 5 1.1 G_temp_sup-Plan_polar 556 389 994 2.175 0.538 0.121 0.040 5 0.9 G_temp_sup-Plan_tempo 2927 1942 8165 3.019 0.602 0.187 0.132 125 16.2 G_temporal_inf 2430 1512 5554 2.757 0.571 0.156 0.067 56 6.7 G_temporal_middle 248 187 376 2.113 0.430 0.129 0.040 2 0.4 Lat_Fis-ant-Horizont 213 145 336 2.346 0.579 0.156 0.056 3 0.5 Lat_Fis-ant-Vertical 1075 706 1210 1.970 0.432 0.141 0.067 15 2.8 Lat_Fis-post 2464 1416 3083 1.958 0.561 0.159 0.074 55 8.1 Pole_occipital 1604 1108 4177 2.732 0.855 0.206 0.141 97 8.7 Pole_temporal 2291 1555 2611 1.838 0.642 0.155 0.065 35 6.0 S_calcarine 2809 1988 3014 1.696 0.565 0.149 0.058 32 7.6 S_central 1033 712 1443 2.272 0.675 0.123 0.038 10 1.6 S_cingul-Marginalis 411 276 706 2.848 0.583 0.190 0.127 10 2.5 S_circular_insula_ant 1420 955 1935 2.211 0.721 0.110 0.036 10 2.0 S_circular_insula_inf 1747 1196 2401 2.312 0.489 0.114 0.042 13 3.1 S_circular_insula_sup 1202 809 1900 2.182 0.608 0.125 0.055 15 2.5 S_collat_transv_ant 330 214 333 1.885 0.504 0.150 0.053 3 0.7 S_collat_transv_post 2915 1891 3860 2.088 0.472 0.120 0.049 31 6.6 S_front_inf 1440 880 1575 1.871 0.444 0.138 0.066 21 3.8 S_front_middle 2549 1650 3479 2.203 0.465 0.136 0.060 30 6.7 S_front_sup 333 224 345 1.740 0.335 0.111 0.026 2 0.4 S_interm_prim-Jensen 3270 2184 4004 2.035 0.443 0.128 0.047 38 6.7 S_intrapariet_and_P_trans 1214 755 1237 1.826 0.391 0.138 0.053 14 2.7 S_oc_middle_and_Lunatus 1260 760 1519 2.142 0.418 0.123 0.042 12 2.3 S_oc_sup_and_transversal 698 465 854 2.130 0.412 0.152 0.062 13 1.6 S_occipital_ant 635 430 935 2.105 0.501 0.152 0.129 24 2.7 S_oc-temp_lat 1505 1048 2103 2.084 0.554 0.135 0.043 14 2.9 S_oc-temp_med_and_Lingual 302 206 361 1.646 0.381 0.153 0.057 4 0.8 S_orbital_lateral 625 438 946 2.077 0.652 0.161 0.100 18 3.7 S_orbital_med-olfact 1295 843 1993 2.301 0.731 0.173 0.093 26 4.8 S_orbital-H_Shaped 1914 1263 2173 1.777 0.501 0.123 0.041 19 3.4 S_parieto_occipital 1315 746 1435 2.293 0.958 0.173 0.095 54 5.4 S_pericallosal 2920 1877 3488 2.021 0.474 0.132 0.055 43 7.2 S_postcentral 1458 953 1836 2.146 0.425 0.134 0.067 115 5.2 S_precentral-inf-part 1229 754 1374 2.042 0.588 0.149 0.067 20 3.8 S_precentral-sup-part 671 410 981 2.263 0.723 0.164 0.080 15 2.1 S_suborbital 1045 719 1541 2.119 0.500 0.144 0.047 14 2.2 S_subparietal 1201 827 1635 2.192 0.482 0.121 0.036 9 2.1 S_temporal_inf 4929 3344 7158 2.214 0.469 0.128 0.047 56 10.0 S_temporal_sup 383 233 508 2.157 0.353 0.111 0.040 5 0.7 S_temporal_transverse #----------------------------------------- #@# Cortical Parc 3 lh Fri Jan 22 12:35:17 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 T40_OM_Post lh ../surf/lh.sphere.reg /Applications/freesurfer/average/lh.DKTatlas40.gcs ../label/lh.aparc.DKTatlas40.annot \n setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading atlas from /Applications/freesurfer/average/lh.DKTatlas40.gcs... reading color table from GCSA file.... average std = 0.9 using min determinant for regularization = 0.007 0 singular and 293 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 913 labels changed using aseg relabeling using gibbs priors... 000: 2688 changed, 130269 examined... 001: 663 changed, 11373 examined... 002: 154 changed, 3522 examined... 003: 62 changed, 872 examined... 004: 38 changed, 362 examined... 005: 19 changed, 201 examined... 006: 10 changed, 117 examined... 007: 4 changed, 69 examined... 008: 2 changed, 28 examined... 009: 3 changed, 15 examined... 010: 2 changed, 16 examined... 011: 1 changed, 16 examined... 012: 0 changed, 7 examined... 188 labels changed using aseg 000: 57 total segments, 24 labels (362 vertices) changed 001: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 50 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 480 vertices marked for relabeling... 480 labels changed in reclassification. writing output to ../label/lh.aparc.DKTatlas40.annot... classification took 0 minutes and 39 seconds. #----------------------------------------- #@# Parcellation Stats 3 lh Fri Jan 22 12:35:56 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_anatomical_stats -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.DKTatlas40.stats -b -a ../label/lh.aparc.DKTatlas40.annot -c ../label/aparc.annot.DKTatlas40.ctab T40_OM_Post lh white \n computing statistics for each annotation in ../label/lh.aparc.DKTatlas40.annot. reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white... reading input pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.pial... reading input white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 36 entries read (originally /Applications/freesurfer/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.DKTatlas40.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1581 1040 2797 2.667 0.618 0.158 0.063 35 4.6 caudalanteriorcingulate 3936 2308 5626 2.331 0.488 0.149 0.142 251 31.5 caudalmiddlefrontal 2837 1640 3278 1.827 0.491 0.141 0.068 47 8.8 cuneus 595 386 1526 2.765 1.082 0.185 0.109 17 2.9 entorhinal 3497 2281 6224 2.358 0.571 0.160 0.085 88 11.9 fusiform 5652 3611 9479 2.364 0.534 0.148 0.056 94 12.8 inferiorparietal 4726 3182 10948 2.687 0.705 0.173 0.113 200 21.2 inferiortemporal 1494 894 2108 2.243 0.701 0.158 0.101 50 6.9 isthmuscingulate 7977 4600 10583 2.092 0.524 0.151 0.072 170 25.0 lateraloccipital 3831 2490 7016 2.420 0.714 0.188 0.309 280 21.3 lateralorbitofrontal 3699 2292 4761 1.887 0.593 0.165 0.099 89 13.5 lingual 2389 1479 4077 2.367 0.800 0.178 0.105 71 10.4 medialorbitofrontal 5377 3534 10302 2.529 0.572 0.142 0.056 94 12.8 middletemporal 899 595 1937 2.708 0.869 0.145 0.062 15 2.3 parahippocampal 2685 1564 3846 2.314 0.643 0.146 0.087 101 10.0 paracentral 2460 1493 3810 2.340 0.518 0.144 0.094 162 10.3 parsopercularis 940 595 1779 2.448 0.547 0.205 0.223 564 8.6 parsorbitalis 2146 1370 3352 2.148 0.522 0.137 0.065 38 6.8 parstriangularis 1868 1201 1879 1.650 0.510 0.183 0.107 80 9.1 pericalcarine 7145 4207 8753 1.926 0.571 0.143 0.074 145 22.0 postcentral 1679 1105 2881 2.354 0.659 0.167 0.078 46 5.2 posteriorcingulate 7372 4385 10334 2.248 0.706 0.152 0.136 207 34.4 precentral 5579 3584 8944 2.306 0.625 0.152 0.067 99 14.7 precuneus 1582 984 3091 2.786 0.774 0.170 0.245 263 7.4 rostralanteriorcingulate 5768 3456 8488 2.150 0.522 0.149 0.087 170 23.0 rostralmiddlefrontal 11875 7142 19796 2.388 0.630 0.155 0.108 505 51.4 superiorfrontal 6593 3966 9209 2.183 0.533 0.137 0.083 160 22.7 superiorparietal 6931 4525 12850 2.441 0.670 0.145 0.212 247 27.1 superiortemporal 5561 3505 8617 2.217 0.558 0.152 0.066 115 16.2 supramarginal 715 376 804 2.005 0.357 0.148 0.088 13 2.1 transversetemporal 2816 1727 5351 2.797 0.815 0.158 0.317 218 54.4 insula \n#----------------------------------------- #@# Curvature Stats rh Fri Jan 22 12:36:10 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf \n mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/rh.curv.stats -F smoothwm T40_OM_Post rh curv sulc \n Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/rh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ T40_OM_Post/rh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vertex faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 278 ] Gb_filter = 0 WARN: S lookup min: -0.312629 WARN: S explicit min: 0.000000 vertex = 790 #-------------------------------------------- #@# Sphere rh Fri Jan 22 12:36:17 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_sphere -seed 1234 ../surf/rh.inflated ../surf/rh.sphere \n setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... scaling brain by 0.328... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=MacBo, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 1234 -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %18.97 pass 1: epoch 2 of 3 starting distance error %18.97 unfolding complete - removing small folds... starting distance error %18.92 removing remaining folds... final distance error %18.94 MRISunfold() return, current seed 1234 writing spherical brain to ../surf/rh.sphere spherical transformation took 0.47 hours #-------------------------------------------- #@# Surf Reg rh Fri Jan 22 13:04:21 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_register -curv ../surf/rh.sphere /Applications/freesurfer/average/rh.average.curvature.filled.buckner40.tif ../surf/rh.sphere.reg \n using smoothwm curvature for final alignment $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading surface from ../surf/rh.sphere... reading template parameterization from /Applications/freesurfer/average/rh.average.curvature.filled.buckner40.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=MacBo, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 1 randomSeed 0 tol=5.0e-01, sigma=0.0, host=MacBo, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading rh.sulc curvature mean = -0.000, std = 0.581 curvature mean = 0.024, std = 0.936 curvature mean = 0.028, std = 0.872 Starting MRISrigidBodyAlignGlobal() d=64.00 min @ (16.00, 0.00, 0.00) sse = 310003.3, tmin=0.6397 d=32.00 min @ (-8.00, -8.00, 0.00) sse = 240417.2, tmin=1.2985 d=16.00 min @ (4.00, 4.00, 0.00) sse = 236041.9, tmin=1.9664 d=8.00 min @ (-2.00, -2.00, -2.00) sse = 222081.2, tmin=2.6508 d=4.00 min @ (1.00, 0.00, 1.00) sse = 219637.7, tmin=3.3511 d=2.00 min @ (0.00, 0.00, -0.50) sse = 219452.5, tmin=4.0487 d=1.00 min @ (0.00, -0.25, 0.25) sse = 219201.5, tmin=4.7377 d=0.50 min @ (-0.12, 0.00, -0.12) sse = 219146.0, tmin=5.4183 tol=1.0e+00, sigma=0.5, host=MacBo, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization MRISrigidBodyAlignGlobal() done 5.42 min curvature mean = -0.010, std = 0.957 curvature mean = 0.011, std = 0.948 curvature mean = -0.014, std = 0.967 curvature mean = 0.004, std = 0.977 curvature mean = -0.017, std = 0.968 curvature mean = 0.001, std = 0.990 2 Reading smoothwm curvature mean = -0.035, std = 0.333 curvature mean = 0.004, std = 0.070 curvature mean = 0.066, std = 0.304 curvature mean = 0.004, std = 0.084 curvature mean = 0.031, std = 0.467 curvature mean = 0.004, std = 0.091 curvature mean = 0.018, std = 0.593 curvature mean = 0.004, std = 0.093 curvature mean = 0.007, std = 0.695 MRISregister() return, current seed 0 writing registered surface to ../surf/rh.sphere.reg... expanding nbhd size to 1 #-------------------------------------------- #@# Jacobian white rh Fri Jan 22 13:20:14 EET 2016 \n mris_jacobian ../surf/rh.white ../surf/rh.sphere.reg ../surf/rh.jacobian_white \n reading surface from ../surf/rh.white... writing curvature file ../surf/rh.jacobian_white #-------------------------------------------- #@# AvgCurv rh Fri Jan 22 13:20:16 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mrisp_paint -a 5 /Applications/freesurfer/average/rh.average.curvature.filled.buckner40.tif#6 ../surf/rh.sphere.reg ../surf/rh.avg_curv \n averaging curvature patterns 5 times... reading surface from ../surf/rh.sphere.reg... reading template parameterization from /Applications/freesurfer/average/rh.average.curvature.filled.buckner40.tif... writing curvature file to ../surf/rh.avg_curv... #----------------------------------------- #@# Cortical Parc rh Fri Jan 22 13:20:18 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 T40_OM_Post rh ../surf/rh.sphere.reg /Applications/freesurfer/average/rh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ../label/rh.aparc.annot \n setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading atlas from /Applications/freesurfer/average/rh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs... reading color table from GCSA file.... average std = 0.7 using min determinant for regularization = 0.006 0 singular and 311 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 1143 labels changed using aseg relabeling using gibbs priors... 000: 2887 changed, 132060 examined... 001: 645 changed, 12101 examined... 002: 156 changed, 3584 examined... 003: 55 changed, 944 examined... 004: 13 changed, 315 examined... 005: 4 changed, 76 examined... 006: 0 changed, 27 examined... 185 labels changed using aseg 000: 103 total segments, 65 labels (527 vertices) changed 001: 41 total segments, 3 labels (4 vertices) changed 002: 38 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 52 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1267 vertices marked for relabeling... 1267 labels changed in reclassification. writing output to ../label/rh.aparc.annot... classification took 0 minutes and 40 seconds. #-------------------------------------------- #@# Make Pial Surf rh Fri Jan 22 13:21:00 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_make_surfaces -white NOWRITE -mgz -T1 brain.finalsurfs T40_OM_Post rh \n -white NOWRITE indicates that white, curv, area, and cortex.label files will not be written... INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/filled.mgz... reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/brain.finalsurfs.mgz... reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... 13350 bright wm thresholded. 2609 bright non-wm voxels segmented. reading original surface position from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.orig... computing class statistics... border white: 274904 voxels (1.64%) border gray 286178 voxels (1.71%) WM (98.0): 98.5 +- 6.5 [70.0 --> 110.0] GM (89.0) : 86.3 +- 11.6 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 71.4 (was 70) setting MAX_BORDER_WHITE to 109.5 (was 105) setting MIN_BORDER_WHITE to 83.0 (was 85) setting MAX_CSF to 59.9 (was 40) setting MAX_GRAY to 96.5 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 77.2 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 48.3 (was 40) smoothing contralateral hemisphere... using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=103, GM=83 mean inside = 97.4, mean outside = 84.7 smoothing surface for 5 iterations... reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) repositioning cortical surface to gray/white boundary reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/aseg.mgz... smoothing T1 volume with sigma = 2.000 vertex spacing 0.81 +- 0.23 (0.01-->4.32) (max @ vno 115086 --> 131338) face area 0.27 +- 0.13 (0.00-->2.89) mean absolute distance = 0.92 +- 1.22 4829 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... deleting segment 1 with 433 points - only 5.08% unknown removing 3 vertex label from ripped group removing 2 vertex label from ripped group deleting segment 7 with 5 points - only 0.00% unknown mean border=90.6, 104 (104) missing vertices, mean dist 0.1 [1.1 (%37.8)->0.8 (%62.2))] %35 local maxima, %60 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=MacBo, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.89 +- 0.26 (0.03-->4.62) (max @ vno 131558 --> 131564) face area 0.27 +- 0.14 (0.00-->2.86) mean absolute distance = 0.56 +- 0.91 5431 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3784511.0, rms=7.40 001: dt: 0.5000, sse=4769532.5, rms=5.105 (0.000%) 002: dt: 0.5000, sse=4885297.0, rms=3.649 (0.000%) 003: dt: 0.5000, sse=5066031.0, rms=2.835 (0.000%) 004: dt: 0.5000, sse=5185370.0, rms=2.428 (0.000%) 005: dt: 0.5000, sse=5223995.0, rms=2.234 (0.000%) 006: dt: 0.5000, sse=5267411.5, rms=2.143 (0.000%) 007: dt: 0.5000, sse=5285745.5, rms=2.090 (0.000%) rms = 2.06, time step reduction 1 of 3 to 0.250... 008: dt: 0.5000, sse=5339312.0, rms=2.060 (0.000%) 009: dt: 0.2500, sse=3872403.2, rms=1.686 (0.000%) rms = 1.64, time step reduction 2 of 3 to 0.125... 010: dt: 0.2500, sse=3740639.2, rms=1.638 (0.000%) rms = 1.62, time step reduction 3 of 3 to 0.062... 011: dt: 0.1250, sse=3676622.8, rms=1.623 (0.000%) positioning took 1.1 minutes inhibiting deformation at non-cortical midline structures... removing 2 vertex label from ripped group deleting segment 1 with 13 points - only 0.00% unknown deleting segment 2 with 306 points - only 7.19% unknown deleting segment 7 with 32 points - only 12.50% unknown deleting segment 9 with 37 points - only 0.00% unknown mean border=92.3, 135 (46) missing vertices, mean dist -0.3 [0.7 (%60.1)->0.3 (%39.9))] %51 local maxima, %44 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=MacBo, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.87 +- 0.26 (0.06-->4.64) (max @ vno 131558 --> 131564) face area 0.33 +- 0.16 (0.00-->3.63) mean absolute distance = 0.45 +- 0.59 4927 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3976036.2, rms=3.26 012: dt: 0.5000, sse=4275484.0, rms=2.175 (0.000%) 013: dt: 0.5000, sse=4724059.5, rms=1.839 (0.000%) 014: dt: 0.5000, sse=4698967.0, rms=1.762 (0.000%) rms = 1.75, time step reduction 1 of 3 to 0.250... 015: dt: 0.5000, sse=5035449.0, rms=1.750 (0.000%) 016: dt: 0.2500, sse=4077903.5, rms=1.455 (0.000%) rms = 1.42, time step reduction 2 of 3 to 0.125... 017: dt: 0.2500, sse=3956278.2, rms=1.420 (0.000%) rms = 1.41, time step reduction 3 of 3 to 0.062... 018: dt: 0.1250, sse=3911403.8, rms=1.409 (0.000%) positioning took 0.7 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 13 points - only 0.00% unknown deleting segment 1 with 305 points - only 7.21% unknown deleting segment 2 with 32 points - only 12.50% unknown removing 4 vertex label from ripped group removing 4 vertex label from ripped group deleting segment 4 with 4 points - only 0.00% unknown deleting segment 5 with 37 points - only 0.00% unknown mean border=94.4, 157 (29) missing vertices, mean dist -0.3 [0.5 (%67.5)->0.3 (%32.5))] %71 local maxima, %24 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=MacBo, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.86 +- 0.26 (0.06-->4.73) (max @ vno 131558 --> 131564) face area 0.32 +- 0.16 (0.00-->3.50) mean absolute distance = 0.34 +- 0.46 3762 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=4078464.2, rms=3.05 019: dt: 0.5000, sse=4311500.5, rms=1.813 (0.000%) 020: dt: 0.5000, sse=4784485.0, rms=1.587 (0.000%) rms = 1.61, time step reduction 1 of 3 to 0.250... 021: dt: 0.2500, sse=4350453.5, rms=1.407 (0.000%) 022: dt: 0.2500, sse=4132656.5, rms=1.325 (0.000%) rms = 1.32, time step reduction 2 of 3 to 0.125... 023: dt: 0.2500, sse=4087341.2, rms=1.317 (0.000%) rms = 1.31, time step reduction 3 of 3 to 0.062... 024: dt: 0.1250, sse=4049126.0, rms=1.307 (0.000%) positioning took 0.7 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 18 points - only 0.00% unknown deleting segment 1 with 317 points - only 6.94% unknown deleting segment 2 with 6 points - only 0.00% unknown deleting segment 3 with 7 points - only 0.00% unknown deleting segment 4 with 10 points - only 0.00% unknown mean border=95.3, 176 (22) missing vertices, mean dist -0.1 [0.4 (%59.1)->0.3 (%40.9))] %80 local maxima, %15 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=MacBo, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 repositioning cortical surface to gray/csf boundary. smoothing T1 volume with sigma = 2.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=4072537.5, rms=1.78 025: dt: 0.5000, sse=4953429.5, rms=1.174 (0.000%) rms = 1.39, time step reduction 1 of 3 to 0.250... 026: dt: 0.2500, sse=4623756.5, rms=1.081 (0.000%) rms = 1.09, time step reduction 2 of 3 to 0.125... rms = 1.07, time step reduction 3 of 3 to 0.062... 027: dt: 0.1250, sse=4587918.0, rms=1.073 (0.000%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... deleting segment 1 with 43 points - only 48.84% unknown smoothing surface for 5 iterations... mean border=71.0, 101 (101) missing vertices, mean dist 2.0 [0.2 (%0.0)->2.4 (%100.0))] %40 local maxima, %40 large gradients and %16 min vals, 628 gradients ignored tol=1.0e-04, sigma=2.0, host=MacBo, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 1.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=18139694.0, rms=25.07 001: dt: 0.5000, sse=15280203.0, rms=22.668 (0.000%) 002: dt: 0.5000, sse=12899315.0, rms=20.480 (0.000%) 003: dt: 0.5000, sse=11062146.0, rms=18.537 (0.000%) 004: dt: 0.5000, sse=9803256.0, rms=16.772 (0.000%) 005: dt: 0.5000, sse=8920511.0, rms=15.143 (0.000%) 006: dt: 0.5000, sse=8280684.0, rms=13.584 (0.000%) 007: dt: 0.5000, sse=7708252.5, rms=12.054 (0.000%) 008: dt: 0.5000, sse=7266245.0, rms=10.546 (0.000%) 009: dt: 0.5000, sse=6931098.0, rms=9.134 (0.000%) 010: dt: 0.5000, sse=6767951.5, rms=7.886 (0.000%) 011: dt: 0.5000, sse=6701627.5, rms=6.870 (0.000%) 012: dt: 0.5000, sse=6679865.0, rms=6.071 (0.000%) 013: dt: 0.5000, sse=6757025.0, rms=5.525 (0.000%) 014: dt: 0.5000, sse=6791445.0, rms=5.187 (0.000%) 015: dt: 0.5000, sse=6841993.5, rms=4.985 (0.000%) 016: dt: 0.5000, sse=6877214.5, rms=4.844 (0.000%) 017: dt: 0.5000, sse=6874097.0, rms=4.765 (0.000%) 018: dt: 0.5000, sse=6888442.5, rms=4.684 (0.000%) rms = 4.64, time step reduction 1 of 3 to 0.250... 019: dt: 0.5000, sse=6917921.5, rms=4.635 (0.000%) 020: dt: 0.2500, sse=4423600.0, rms=3.541 (0.000%) 021: dt: 0.2500, sse=4165544.0, rms=3.215 (0.000%) 022: dt: 0.2500, sse=3992286.0, rms=3.139 (0.000%) rms = 3.09, time step reduction 2 of 3 to 0.125... 023: dt: 0.2500, sse=3941051.8, rms=3.093 (0.000%) 024: dt: 0.1250, sse=3685605.8, rms=2.873 (0.000%) rms = 2.84, time step reduction 3 of 3 to 0.062... 025: dt: 0.1250, sse=3633450.2, rms=2.836 (0.000%) positioning took 2.3 minutes mean border=67.8, 749 (22) missing vertices, mean dist 0.2 [0.2 (%33.7)->0.4 (%66.3))] %63 local maxima, %22 large gradients and %11 min vals, 289 gradients ignored tol=1.0e-04, sigma=1.0, host=MacBo, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 averaging target values for 5 iterations... 000: dt: 0.0000, sse=4412716.0, rms=5.57 026: dt: 0.5000, sse=4639820.5, rms=4.610 (0.000%) rms = 4.67, time step reduction 1 of 3 to 0.250... 027: dt: 0.2500, sse=4196196.0, rms=3.676 (0.000%) 028: dt: 0.2500, sse=4232679.5, rms=3.312 (0.000%) 029: dt: 0.2500, sse=4172758.8, rms=3.149 (0.000%) 030: dt: 0.2500, sse=4198850.5, rms=3.092 (0.000%) 031: dt: 0.2500, sse=4182564.5, rms=3.026 (0.000%) rms = 2.99, time step reduction 2 of 3 to 0.125... 032: dt: 0.2500, sse=4202357.5, rms=2.994 (0.000%) 033: dt: 0.1250, sse=3966389.2, rms=2.727 (0.000%) 034: dt: 0.1250, sse=3939638.5, rms=2.672 (0.000%) rms = 2.66, time step reduction 3 of 3 to 0.062... 035: dt: 0.1250, sse=3924581.5, rms=2.661 (0.000%) positioning took 1.0 minutes mean border=66.2, 978 (14) missing vertices, mean dist 0.1 [0.2 (%36.6)->0.3 (%63.4))] %72 local maxima, %13 large gradients and %10 min vals, 328 gradients ignored tol=1.0e-04, sigma=0.5, host=MacBo, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 averaging target values for 5 iterations... 000: dt: 0.0000, sse=4059793.2, rms=3.47 rms = 4.23, time step reduction 1 of 3 to 0.250... 036: dt: 0.2500, sse=3915326.0, rms=2.892 (0.000%) 037: dt: 0.2500, sse=3966351.5, rms=2.725 (0.000%) rms = 2.69, time step reduction 2 of 3 to 0.125... 038: dt: 0.2500, sse=4083275.8, rms=2.688 (0.000%) 039: dt: 0.1250, sse=3953136.0, rms=2.527 (0.000%) rms = 2.49, time step reduction 3 of 3 to 0.062... 040: dt: 0.1250, sse=3943289.2, rms=2.486 (0.000%) positioning took 0.5 minutes mean border=65.6, 1642 (13) missing vertices, mean dist 0.0 [0.2 (%45.8)->0.2 (%54.2))] %73 local maxima, %11 large gradients and %10 min vals, 297 gradients ignored tol=1.0e-04, sigma=0.2, host=MacBo, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing pial surface to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.pial... writing smoothed curvature to rh.curv.pial 000: dt: 0.0000, sse=3958013.8, rms=2.62 rms = 3.44, time step reduction 1 of 3 to 0.250... 041: dt: 0.2500, sse=3912155.5, rms=2.432 (0.000%) rms = 2.40, time step reduction 2 of 3 to 0.125... 042: dt: 0.2500, sse=4057993.0, rms=2.404 (0.000%) 043: dt: 0.1250, sse=3986514.2, rms=2.333 (0.000%) rms = 2.30, time step reduction 3 of 3 to 0.062... 044: dt: 0.1250, sse=3997898.8, rms=2.299 (0.000%) positioning took 0.4 minutes writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.curv.pial writing smoothed area to rh.area.pial writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.area.pial vertex spacing 0.96 +- 0.40 (0.04-->7.93) (max @ vno 102436 --> 102435) face area 0.37 +- 0.28 (0.00-->5.42) measuring cortical thickness... writing cortical thickness estimate to 'thickness' file. 0 of 132060 vertices processed 25000 of 132060 vertices processed 50000 of 132060 vertices processed 75000 of 132060 vertices processed 100000 of 132060 vertices processed 125000 of 132060 vertices processed 0 of 132060 vertices processed 25000 of 132060 vertices processed 50000 of 132060 vertices processed 75000 of 132060 vertices processed 100000 of 132060 vertices processed 125000 of 132060 vertices processed thickness calculation complete, 239:997 truncations. 37624 vertices at 0 distance 94612 vertices at 1 distance 73537 vertices at 2 distance 31512 vertices at 3 distance 10387 vertices at 4 distance 2981 vertices at 5 distance 974 vertices at 6 distance 297 vertices at 7 distance 130 vertices at 8 distance 63 vertices at 9 distance 25 vertices at 10 distance 33 vertices at 11 distance 19 vertices at 12 distance 12 vertices at 13 distance 9 vertices at 14 distance 18 vertices at 15 distance 8 vertices at 16 distance 2 vertices at 17 distance 3 vertices at 18 distance 2 vertices at 19 distance 6 vertices at 20 distance writing curvature file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.thickness positioning took 9.4 minutes #-------------------------------------------- #@# Surf Volume rh Fri Jan 22 13:30:22 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf \n mris_calc -o rh.area.mid rh.area add rh.area.pial \n Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] \n mris_calc -o rh.area.mid rh.area.mid div 2 \n Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] \n mris_calc -o rh.volume rh.area.mid mul rh.thickness \n Saving result to 'rh.volume' (type = MRI_CURV_FILE) [ ok ] #----------------------------------------- #@# WM/GM Contrast rh Fri Jan 22 13:30:24 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n pctsurfcon --s T40_OM_Post --rh-only \n Log file is /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts/pctsurfcon.log Fri Jan 22 13:30:24 EET 2016 setenv SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects cd /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts /Applications/freesurfer/bin/pctsurfcon $Id: pctsurfcon,v 1.11.2.1 2011/11/10 20:37:10 nicks Exp $ Darwin MacBook-Pro-di-Marco.local 13.3.0 Darwin Kernel Version 13.3.0: Tue Jun 3 21:27:35 PDT 2014; root:xnu-2422.110.17~1/RELEASE_X86_64 x86_64 FREESURFER_HOME /Applications/freesurfer mri_vol2surf --mov /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --projdist -1 --o /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.31249/rh.wm.mgh --regheader T40_OM_Post --cortex srcvol = /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/orig.mgz as target reference. Loading label /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/rh.cortex.label Reading surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 83406 Masking with /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/rh.cortex.label Writing to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.31249/rh.wm.mgh Dim: 132060 1 1 mri_vol2surf --mov /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --o /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.31249/rh.gm.mgh --projfrac 0.3 --regheader T40_OM_Post --cortex srcvol = /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/orig.mgz as target reference. Loading label /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/rh.cortex.label Reading surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Done reading source surface Reading thickness /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.thickness Done Mapping Source Volume onto Source Subject Surface 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 98555 Masking with /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/rh.cortex.label Writing to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.31249/rh.gm.mgh Dim: 132060 1 1 mri_concat /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.31249/rh.wm.mgh /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp.pctsurfcon.31249/rh.gm.mgh --paired-diff-norm --mul 100 --o /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.w-g.pct.mgh mri_segstats --in /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.w-g.pct.mgh --annot T40_OM_Post rh aparc --sum /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/stats/rh.w-g.pct.stats --snr $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --in /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.w-g.pct.mgh --annot T40_OM_Post rh aparc --sum /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/stats/rh.w-g.pct.stats --snr sysname Darwin hostname MacBook-Pro-di-Marco.local machine x86_64 user marco UseRobust 0 Constructing seg from annotation Reading annotation reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Seg base 2000 Loading /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.w-g.pct.mgh Vertex Area is 0.622843 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation 0 2000 unknown 0 0.000 1 2001 bankssts 1232 818.284 2 2002 caudalanteriorcingulate 1168 782.682 3 2003 caudalmiddlefrontal 3384 2038.327 4 2004 corpuscallosum 0 0.000 5 2005 cuneus 2345 1281.494 6 2006 entorhinal 575 375.032 7 2007 fusiform 3867 2559.339 8 2008 inferiorparietal 7254 4676.591 9 2009 inferiortemporal 4670 3004.215 10 2010 isthmuscingulate 1367 823.802 11 2011 lateraloccipital 7785 4566.743 12 2012 lateralorbitofrontal 3453 2184.815 13 2013 lingual 4125 2502.739 14 2014 medialorbitofrontal 2635 1684.308 15 2015 middletemporal 4953 3188.408 16 2016 parahippocampal 833 554.234 17 2017 paracentral 2414 1478.785 18 2018 parsopercularis 1936 1258.402 19 2019 parsorbitalis 1084 669.410 20 2020 parstriangularis 1968 1249.643 21 2021 pericalcarine 2318 1513.529 22 2022 postcentral 6083 3658.509 23 2023 posteriorcingulate 1642 1059.599 24 2024 precentral 8235 5133.934 25 2025 precuneus 5650 3476.493 26 2026 rostralanteriorcingulate 953 587.825 27 2027 rostralmiddlefrontal 8736 5522.190 28 2028 superiorfrontal 9804 5964.003 29 2029 superiorparietal 8410 5042.413 30 2030 superiortemporal 5347 3348.632 31 2031 supramarginal 4932 3146.810 32 2032 frontalpole 344 220.970 33 2033 temporalpole 544 415.052 34 2034 transversetemporal 611 296.096 35 2035 insula 2985 1923.988 Reporting on 34 segmentations mri_segstats done Cleaning up #----------------------------------------- #@# Parcellation Stats rh Fri Jan 22 13:30:33 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_anatomical_stats -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab T40_OM_Post rh white \n computing statistics for each annotation in ../label/rh.aparc.annot. reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white... reading input pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.pial... reading input white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1232 818 1965 2.383 0.384 0.127 0.043 12 2.2 bankssts 1168 783 2292 2.595 0.847 0.165 0.076 31 3.6 caudalanteriorcingulate 3384 2038 5117 2.392 0.496 0.144 0.106 331 20.8 caudalmiddlefrontal 2345 1281 2667 1.858 0.533 0.153 0.075 50 8.1 cuneus 575 375 1624 3.032 0.738 0.200 0.192 31 6.0 entorhinal 3867 2559 7315 2.392 0.684 0.172 0.089 92 14.5 fusiform 7254 4677 12166 2.373 0.562 0.147 0.059 148 17.9 inferiorparietal 4670 3004 9569 2.698 0.716 0.154 0.073 91 14.4 inferiortemporal 1367 824 2025 2.234 0.680 0.162 0.144 126 11.0 isthmuscingulate 7785 4567 10718 2.117 0.591 0.151 0.080 148 27.4 lateraloccipital 3453 2185 5622 2.373 0.751 0.207 0.191 370 24.8 lateralorbitofrontal 4125 2503 5122 1.871 0.533 0.180 0.103 102 18.1 lingual 2635 1684 4882 2.420 0.870 0.163 0.091 97 8.5 medialorbitofrontal 4953 3188 10403 2.691 0.591 0.144 0.091 207 24.3 middletemporal 833 554 1745 2.694 0.922 0.154 0.079 15 2.9 parahippocampal 2414 1479 3121 2.090 0.627 0.145 0.069 40 7.5 paracentral 1936 1258 3014 2.288 0.441 0.144 0.065 30 5.2 parsopercularis 1084 669 2027 2.384 0.637 0.189 0.122 30 5.2 parsorbitalis 1968 1250 3278 2.206 0.650 0.159 0.075 37 6.5 parstriangularis 2318 1514 2239 1.531 0.429 0.161 0.080 66 6.5 pericalcarine 6083 3659 7411 1.841 0.598 0.140 0.088 145 21.0 postcentral 1642 1060 2817 2.438 0.653 0.155 0.071 31 4.6 posteriorcingulate 8235 5134 11923 2.229 0.677 0.164 0.838 6203 514.6 precentral 5650 3476 8222 2.111 0.578 0.143 0.069 225 16.9 precuneus 953 588 2190 3.122 0.965 0.171 0.120 128 5.3 rostralanteriorcingulate 8736 5522 14189 2.234 0.534 0.164 0.111 293 44.6 rostralmiddlefrontal 9804 5964 16541 2.495 0.539 0.161 0.258 6220 156.0 superiorfrontal 8410 5042 11746 2.120 0.564 0.141 0.081 467 28.6 superiorparietal 5347 3349 9636 2.521 0.586 0.143 0.090 181 19.2 superiortemporal 4932 3147 7734 2.317 0.569 0.147 0.067 84 14.7 supramarginal 344 221 864 2.744 0.496 0.215 0.145 17 2.1 frontalpole 544 415 2287 3.611 0.624 0.215 0.170 19 2.8 temporalpole 611 296 709 2.196 0.312 0.154 0.258 84 7.2 transversetemporal 2985 1924 6036 2.883 0.953 0.173 0.161 162 21.3 insula #----------------------------------------- #@# Cortical Parc 2 rh Fri Jan 22 13:30:47 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 T40_OM_Post rh ../surf/rh.sphere.reg /Applications/freesurfer/average/rh.destrieux.simple.2009-07-29.gcs ../label/rh.aparc.a2009s.annot \n setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading atlas from /Applications/freesurfer/average/rh.destrieux.simple.2009-07-29.gcs... reading color table from GCSA file.... average std = 1.9 0.2 using min determinant for regularization = 0.000 0 singular and 851 ill-conditioned covariance matrices regularized input 1: CURVATURE FILE, flags 0, avgs 0, name sulc input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 13 labels changed using aseg relabeling using gibbs priors... 000: 9106 changed, 132060 examined... 001: 2200 changed, 35068 examined... 002: 647 changed, 11399 examined... 003: 287 changed, 3679 examined... 004: 144 changed, 1588 examined... 005: 71 changed, 809 examined... 006: 43 changed, 413 examined... 007: 27 changed, 248 examined... 008: 22 changed, 157 examined... 009: 17 changed, 119 examined... 010: 11 changed, 81 examined... 011: 7 changed, 59 examined... 012: 3 changed, 41 examined... 013: 1 changed, 15 examined... 014: 1 changed, 6 examined... 015: 2 changed, 7 examined... 016: 3 changed, 12 examined... 017: 0 changed, 9 examined... 17 labels changed using aseg 000: 287 total segments, 207 labels (2603 vertices) changed 001: 97 total segments, 18 labels (64 vertices) changed 002: 79 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 99 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... 833 vertices marked for relabeling... 833 labels changed in reclassification. writing output to ../label/rh.aparc.a2009s.annot... classification took 0 minutes and 49 seconds. #----------------------------------------- #@# Parcellation Stats 2 rh Fri Jan 22 13:31:37 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_anatomical_stats -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.a2009s.stats -b -a ../label/rh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab T40_OM_Post rh white \n computing statistics for each annotation in ../label/rh.aparc.a2009s.annot. reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white... reading input pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.pial... reading input white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 76 entries read (originally /autofs/space/birn_044/users/christophe_atlas_rebuild//scripts_2008/Simple_surface_labels2009.txt) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 927 621 1654 2.212 0.563 0.158 0.065 23 2.4 G_and_S_frontomargin 1304 809 2578 2.644 0.665 0.172 0.143 39 9.9 G_and_S_occipital_inf 1620 937 2175 1.985 0.708 0.158 0.110 43 7.0 G_and_S_paracentral 1500 940 2447 2.331 0.540 0.160 0.118 47 9.7 G_and_S_subcentral 1144 700 1893 2.199 0.606 0.184 0.162 60 9.0 G_and_S_transv_frontopol 2759 1805 5312 2.667 0.815 0.158 0.085 157 10.3 G_and_S_cingul-Ant 1395 942 2738 2.653 0.602 0.144 0.062 23 3.3 G_and_S_cingul-Mid-Ant 1306 855 2275 2.454 0.517 0.131 0.047 15 2.6 G_and_S_cingul-Mid-Post 459 284 990 2.575 0.518 0.188 0.117 13 2.3 G_cingul-Post-dorsal 355 201 587 2.287 0.564 0.175 0.309 105 7.2 G_cingul-Post-ventral 2274 1259 2494 1.733 0.538 0.163 0.084 63 8.7 G_cuneus 1305 820 2359 2.342 0.515 0.171 0.092 30 4.9 G_front_inf-Opercular 332 208 660 2.336 0.436 0.175 0.092 6 1.3 G_front_inf-Orbital 1166 686 2290 2.447 0.598 0.170 0.084 32 4.4 G_front_inf-Triangul 3934 2285 7528 2.494 0.505 0.170 0.156 428 30.8 G_front_middle 6933 3976 12619 2.591 0.558 0.178 0.341 6187 147.3 G_front_sup 448 271 1193 3.318 0.958 0.179 0.305 23 8.5 G_Ins_lg_and_S_cent_ins 408 251 1393 3.956 0.728 0.194 0.133 18 2.3 G_insular_short 2346 1383 4312 2.491 0.570 0.155 0.074 49 6.7 G_occipital_middle 1820 940 2543 2.142 0.497 0.130 0.085 41 6.7 G_occipital_sup 1352 858 2611 2.460 0.604 0.177 0.093 39 5.4 G_oc-temp_lat-fusifor 2791 1606 3561 1.912 0.572 0.183 0.113 78 13.0 G_oc-temp_med-Lingual 1468 915 3253 2.800 0.792 0.193 0.164 60 11.7 G_oc-temp_med-Parahip 2620 1637 5180 2.513 0.792 0.228 0.199 270 20.1 G_orbital 2694 1652 5040 2.493 0.535 0.157 0.068 50 7.3 G_pariet_inf-Angular 2510 1532 4789 2.539 0.631 0.163 0.093 63 10.3 G_pariet_inf-Supramar 3089 1823 4649 2.207 0.612 0.149 0.089 152 12.1 G_parietal_sup 2371 1245 3071 1.990 0.535 0.147 0.089 68 10.5 G_postcentral 3498 1866 5363 2.385 0.725 0.177 1.867 6123 497.6 G_precentral 2767 1537 4882 2.389 0.599 0.157 0.085 190 9.7 G_precuneus 692 445 1611 2.663 0.676 0.193 0.150 50 4.3 G_rectus 122 87 297 3.165 1.237 0.150 0.195 18 0.3 G_subcallosal 477 222 596 2.302 0.312 0.172 0.322 83 7.1 G_temp_sup-G_T_transv 1979 1121 4164 2.692 0.563 0.173 0.149 132 11.7 G_temp_sup-Lateral 643 435 1471 3.029 0.769 0.127 0.049 7 1.2 G_temp_sup-Plan_polar 663 440 1085 2.208 0.412 0.128 0.059 13 1.3 G_temp_sup-Plan_tempo 2507 1597 6461 2.966 0.695 0.172 0.088 63 9.5 G_temporal_inf 2983 1836 7048 2.815 0.589 0.158 0.124 190 21.1 G_temporal_middle 411 278 487 1.806 0.644 0.158 0.089 5 1.7 Lat_Fis-ant-Horizont 222 149 348 2.251 0.411 0.131 0.054 2 0.5 Lat_Fis-ant-Vertical 1366 901 1731 2.088 0.533 0.136 0.049 16 2.8 Lat_Fis-post 3513 1977 4251 1.937 0.571 0.160 0.086 96 11.2 Pole_occipital 1616 1149 5456 3.102 0.793 0.212 0.144 57 8.6 Pole_temporal 2437 1653 2589 1.665 0.464 0.164 0.071 38 7.9 S_calcarine 3020 2187 3145 1.606 0.515 0.150 0.057 34 7.6 S_central 1279 863 1742 2.151 0.610 0.126 0.043 12 2.2 S_cingul-Marginalis 487 298 737 2.815 0.770 0.180 0.152 17 2.6 S_circular_insula_ant 1251 840 1916 2.436 0.747 0.129 0.083 33 3.9 S_circular_insula_inf 1341 896 1942 2.477 0.491 0.123 0.050 12 2.8 S_circular_insula_sup 1155 781 1852 2.382 0.537 0.133 0.059 16 2.8 S_collat_transv_ant 675 427 614 1.620 0.397 0.162 0.073 10 2.2 S_collat_transv_post 2132 1382 2670 2.032 0.444 0.132 0.055 25 5.1 S_front_inf 2641 1693 3594 2.091 0.463 0.155 0.075 50 8.3 S_front_middle 2384 1548 3259 2.288 0.449 0.136 0.075 40 8.9 S_front_sup 571 384 672 2.108 0.427 0.128 0.038 4 1.0 S_interm_prim-Jensen 3123 1981 4018 2.150 0.470 0.134 0.060 45 6.6 S_intrapariet_and_P_trans 1480 932 1604 1.867 0.419 0.132 0.059 16 3.4 S_oc_middle_and_Lunatus 1657 1106 1947 1.840 0.467 0.141 0.050 18 3.4 S_oc_sup_and_transversal 581 366 784 2.194 0.498 0.149 0.061 8 1.5 S_occipital_ant 568 369 690 2.095 0.467 0.131 0.048 6 1.0 S_oc-temp_lat 1203 868 1793 2.053 0.590 0.144 0.047 14 2.5 S_oc-temp_med_and_Lingual 191 139 310 1.991 0.423 0.135 0.051 2 0.4 S_orbital_lateral 572 396 742 1.872 0.609 0.142 0.063 10 1.4 S_orbital_med-olfact 1331 850 2060 2.378 0.672 0.190 0.196 170 7.9 S_orbital-H_Shaped 1727 1128 2093 1.911 0.459 0.113 0.035 14 2.4 S_parieto_occipital 1571 969 1653 2.154 0.904 0.154 0.074 37 4.8 S_pericallosal 2244 1472 2446 1.827 0.462 0.136 0.091 251 6.7 S_postcentral 1834 1252 2618 2.294 0.471 0.134 0.099 55 11.3 S_precentral-inf-part 1233 813 1488 2.057 0.550 0.136 0.061 15 2.6 S_precentral-sup-part 316 203 346 1.791 0.860 0.120 0.033 2 0.4 S_suborbital 1335 864 1703 1.967 0.491 0.138 0.065 22 4.1 S_subparietal 1574 1070 2314 2.497 0.572 0.133 0.043 15 3.0 S_temporal_inf 5429 3655 8136 2.340 0.457 0.125 0.044 91 10.6 S_temporal_sup 211 142 293 2.112 0.314 0.112 0.034 1 0.3 S_temporal_transverse #----------------------------------------- #@# Cortical Parc 3 rh Fri Jan 22 13:31:52 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 T40_OM_Post rh ../surf/rh.sphere.reg /Applications/freesurfer/average/rh.DKTatlas40.gcs ../label/rh.aparc.DKTatlas40.annot \n setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading atlas from /Applications/freesurfer/average/rh.DKTatlas40.gcs... reading color table from GCSA file.... average std = 0.9 using min determinant for regularization = 0.008 0 singular and 237 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 979 labels changed using aseg relabeling using gibbs priors... 000: 2551 changed, 132060 examined... 001: 573 changed, 11097 examined... 002: 162 changed, 3232 examined... 003: 63 changed, 949 examined... 004: 32 changed, 373 examined... 005: 21 changed, 181 examined... 006: 7 changed, 100 examined... 007: 8 changed, 36 examined... 008: 7 changed, 40 examined... 009: 4 changed, 45 examined... 010: 2 changed, 16 examined... 011: 1 changed, 14 examined... 012: 3 changed, 7 examined... 013: 3 changed, 11 examined... 014: 4 changed, 19 examined... 015: 7 changed, 19 examined... 016: 4 changed, 29 examined... 017: 3 changed, 27 examined... 018: 3 changed, 17 examined... 019: 2 changed, 15 examined... 020: 1 changed, 12 examined... 021: 1 changed, 7 examined... 022: 1 changed, 7 examined... 023: 1 changed, 7 examined... 024: 1 changed, 7 examined... 025: 1 changed, 7 examined... 026: 2 changed, 7 examined... 027: 3 changed, 11 examined... 028: 2 changed, 15 examined... 029: 2 changed, 15 examined... 030: 1 changed, 14 examined... 031: 1 changed, 7 examined... 032: 3 changed, 7 examined... 033: 3 changed, 13 examined... 034: 4 changed, 18 examined... 035: 2 changed, 22 examined... 036: 5 changed, 14 examined... 037: 3 changed, 17 examined... 038: 3 changed, 12 examined... 039: 3 changed, 12 examined... 040: 0 changed, 10 examined... 249 labels changed using aseg 000: 65 total segments, 32 labels (141 vertices) changed 001: 34 total segments, 1 labels (1 vertices) changed 002: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 34 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 564 vertices marked for relabeling... 564 labels changed in reclassification. writing output to ../label/rh.aparc.DKTatlas40.annot... classification took 0 minutes and 39 seconds. #----------------------------------------- #@# Parcellation Stats 3 rh Fri Jan 22 13:32:31 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/scripts \n mris_anatomical_stats -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.DKTatlas40.stats -b -a ../label/rh.aparc.DKTatlas40.annot -c ../label/aparc.annot.DKTatlas40.ctab T40_OM_Post rh white \n computing statistics for each annotation in ../label/rh.aparc.DKTatlas40.annot. reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white... reading input pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.pial... reading input white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 36 entries read (originally /Applications/freesurfer/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.DKTatlas40.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1172 785 2307 2.598 0.845 0.166 0.076 32 3.6 caudalanteriorcingulate 3516 2110 5271 2.381 0.508 0.146 0.106 335 21.1 caudalmiddlefrontal 2764 1532 3203 1.869 0.520 0.147 0.069 55 8.6 cuneus 626 418 1646 2.938 0.758 0.189 0.193 33 5.9 entorhinal 3239 2120 5630 2.318 0.629 0.165 0.081 72 11.1 fusiform 6860 4437 11557 2.359 0.558 0.149 0.059 107 16.8 inferiorparietal 5246 3411 11305 2.721 0.727 0.161 0.080 110 17.8 inferiortemporal 1389 837 2048 2.233 0.680 0.162 0.143 127 11.1 isthmuscingulate 7966 4682 10940 2.110 0.593 0.151 0.079 150 27.7 lateraloccipital 3791 2417 6574 2.401 0.734 0.206 0.188 435 25.8 lateralorbitofrontal 4139 2511 5135 1.871 0.533 0.180 0.103 102 18.1 lingual 1907 1239 3768 2.442 0.931 0.167 0.095 83 5.8 medialorbitofrontal 5750 3694 11565 2.641 0.584 0.141 0.087 255 27.0 middletemporal 828 549 1713 2.669 0.934 0.156 0.080 15 2.9 parahippocampal 2537 1548 3293 2.116 0.631 0.146 0.070 42 8.1 paracentral 2033 1311 3156 2.279 0.453 0.150 0.074 40 6.4 parsopercularis 1216 743 1915 2.171 0.567 0.184 0.134 33 7.0 parsorbitalis 2134 1338 3520 2.194 0.626 0.156 0.075 38 7.0 parstriangularis 2314 1511 2230 1.532 0.427 0.160 0.080 66 6.5 pericalcarine 6517 3950 8027 1.865 0.603 0.140 0.086 149 21.9 postcentral 1656 1074 2829 2.433 0.648 0.154 0.070 31 4.6 posteriorcingulate 7933 4956 11587 2.222 0.678 0.163 0.867 6195 513.3 precentral 5693 3474 8352 2.123 0.585 0.143 0.070 228 17.3 precuneus 1096 681 2392 3.074 0.950 0.165 0.109 129 5.6 rostralanteriorcingulate 5387 3427 8871 2.279 0.545 0.165 0.123 198 30.5 rostralmiddlefrontal 13388 8214 22432 2.430 0.559 0.163 0.216 6324 171.9 superiorfrontal 7571 4527 10606 2.134 0.562 0.142 0.083 455 26.8 superiorparietal 6886 4414 13536 2.601 0.650 0.153 0.095 219 25.4 superiortemporal 4780 3061 7452 2.322 0.570 0.146 0.067 81 14.1 supramarginal 611 296 699 2.180 0.321 0.153 0.258 84 7.2 transversetemporal 2697 1740 5654 2.955 0.950 0.159 0.132 90 17.2 insula #-------------------------------------------- #@# Cortical ribbon mask Fri Jan 22 13:32:45 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri \n mris_volmask --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon T40_OM_Post \n SUBJECTS_DIR is /Users/marco/Documents/T1s/pipelineT1/subjects loading input data... computing distance to left white surface computing distance to left pial surface computing distance to right white surface computing distance to right pial surface hemi masks overlap voxels = 44 writing volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/ribbon.mgz writing ribbon files #-------------------------------------------- #@# ASeg Stats Fri Jan 22 13:42:02 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post \n mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /Applications/freesurfer/ASegStatsLUT.txt --subject T40_OM_Post \n $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /Applications/freesurfer/ASegStatsLUT.txt --subject T40_OM_Post sysname Darwin hostname MacBook-Pro-di-Marco.local machine x86_64 user marco UseRobust 0 atlas_icv (eTIV) = 1401408 mm^3 (det: 1.390106 ) Computing euler number orig.nofix lheno = -128, rheno = -138 orig.nofix lhholes = 65, rhholes = 70 Loading mri/aseg.mgz Getting Brain Volume Statistics lhCtxGM: 193897.165 193346.000 diff= 551.2 pctdiff= 0.284 rhCtxGM: 198385.593 197883.000 diff= 502.6 pctdiff= 0.253 lhCtxWM: 211740.833 212171.500 diff= -430.7 pctdiff=-0.203 rhCtxWM: 218468.298 219036.500 diff= -568.2 pctdiff=-0.260 SubCortGMVol 48844.000 SupraTentVol 910986.888 (909786.000) diff=1200.888 pctdiff=0.132 SupraTentVolNotVent 872719.888 (871519.000) diff=1200.888 pctdiff=0.138 BrainSegVol 1028098.000 (1024320.000) diff=3778.000 pctdiff=0.367 BrainSegVolNotVent 984938.000 (984686.888) diff=251.112 pctdiff=0.025 BrainSegVolNotVent 984938.000 CerebellumVol 113113.000 VentChorVol 38267.000 3rd4th5thCSF 4893.000 CSFVol 1150.000, OptChiasmVol 271.000 MaskVol 1513194.000 Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 50 segmentations Computing statistics for each segmentation 3 4 Left-Lateral-Ventricle 16631 16631.000 4 5 Left-Inf-Lat-Vent 861 860.718 5 7 Left-Cerebellum-White-Matter 10215 10215.142 6 8 Left-Cerebellum-Cortex 46299 46298.945 7 10 Left-Thalamus-Proper 7112 7112.239 8 11 Left-Caudate 3697 3696.532 9 12 Left-Putamen 3842 3842.026 10 13 Left-Pallidum 1353 1352.807 11 14 3rd-Ventricle 1542 1542.378 12 15 4th-Ventricle 2361 2361.099 13 16 Brain-Stem 18770 18770.141 14 17 Left-Hippocampus 3705 3705.158 15 18 Left-Amygdala 1281 1280.841 16 24 CSF 1081 1081.099 17 26 Left-Accumbens-area 427 427.313 18 28 Left-VentralDC 3172 3172.460 19 30 Left-vessel 167 167.096 20 31 Left-choroid-plexus 1898 1897.961 23 43 Right-Lateral-Ventricle 16110 16109.813 24 44 Right-Inf-Lat-Vent 489 488.676 25 46 Right-Cerebellum-White-Matter 10449 10449.361 26 47 Right-Cerebellum-Cortex 47697 47696.559 27 49 Right-Thalamus-Proper 5853 5853.278 28 50 Right-Caudate 3384 3384.291 29 51 Right-Putamen 3677 3677.215 30 52 Right-Pallidum 1359 1359.228 31 53 Right-Hippocampus 3743 3742.920 32 54 Right-Amygdala 1277 1276.785 33 58 Right-Accumbens-area 349 349.172 34 60 Right-VentralDC 3368 3367.892 35 62 Right-vessel 110 109.809 36 63 Right-choroid-plexus 2184 2184.151 37 72 5th-Ventricle 0 0.000 38 77 WM-hypointensities 1508 1508.348 39 78 Left-WM-hypointensities 0 0.000 40 79 Right-WM-hypointensities 0 0.000 41 80 non-WM-hypointensities 30 30.302 42 81 Left-non-WM-hypointensities 0 0.000 43 82 Right-non-WM-hypointensities 0 0.000 44 85 Optic-Chiasm 243 242.805 45 251 CC_Posterior 989 988.787 46 252 CC_Mid_Posterior 304 303.817 47 253 CC_Central 333 332.722 48 254 CC_Mid_Anterior 373 373.279 49 255 CC_Anterior 650 650.473 Reporting on 45 segmentations mri_segstats done #----------------------------------------- #@# AParc-to-ASeg Fri Jan 22 13:46:01 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post \n mri_aparc2aseg --s T40_OM_Post --volmask \n SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects subject T40_OM_Post outvol /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/aparc+aseg.mgz useribbon 0 baseoffset 0 RipUnknown 0 Reading lh white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading lh pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.pial Loading lh annotations from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Reading rh white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading rh pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.pial Loading rh annotations from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/ribbon.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 389293 Used brute-force search on 0 voxels Writing output aseg to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/aparc+aseg.mgz /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post \n mri_aparc2aseg --s T40_OM_Post --volmask --a2009s \n SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects subject T40_OM_Post outvol /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/aparc.a2009s+aseg.mgz useribbon 0 baseoffset 10100 RipUnknown 0 Reading lh white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading lh pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.pial Loading lh annotations from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/lh.aparc.a2009s.annot reading colortable from annotation file... colortable with 76 entries read (originally /autofs/space/birn_044/users/christophe_atlas_rebuild//scripts_2008/Simple_surface_labels2009.txt) Reading rh white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading rh pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.pial Loading rh annotations from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/rh.aparc.a2009s.annot reading colortable from annotation file... colortable with 76 entries read (originally /autofs/space/birn_044/users/christophe_atlas_rebuild//scripts_2008/Simple_surface_labels2009.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/ribbon.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 389293 Used brute-force search on 0 voxels Writing output aseg to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/aparc.a2009s+aseg.mgz #----------------------------------------- #@# WMParc Fri Jan 22 13:48:14 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post \n mri_aparc2aseg --s T40_OM_Post --labelwm --hypo-as-wm --rip-unknown --volmask --o mri/wmparc.mgz --ctxseg aparc+aseg.mgz \n SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects subject T40_OM_Post outvol mri/wmparc.mgz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 5.000000 RipUnknown 1 CtxSeg /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/aparc+aseg.mgz Reading lh white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading lh pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.pial Loading lh annotations from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Reading rh white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading rh pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.pial Loading rh annotations from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/ribbon.mgz Loading filled from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/filled.mgz Ripping vertices labeled as unkown Ripped 8064 vertices from left hemi Ripped 8418 vertices from right hemi Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/aseg.mgz Loading Ctx Seg File /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/aparc+aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 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T40_OM_Post --surf-wm-vol --ctab /Applications/freesurfer/WMParcStatsLUT.txt --etiv \n $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject T40_OM_Post --surf-wm-vol --ctab /Applications/freesurfer/WMParcStatsLUT.txt --etiv sysname Darwin hostname MacBook-Pro-di-Marco.local machine x86_64 user marco UseRobust 0 atlas_icv (eTIV) = 1401408 mm^3 (det: 1.390106 ) Loading mri/wmparc.mgz Getting Brain Volume Statistics lhCtxGM: 193897.165 193346.000 diff= 551.2 pctdiff= 0.284 rhCtxGM: 198385.593 197883.000 diff= 502.6 pctdiff= 0.253 lhCtxWM: 211740.833 212171.500 diff= -430.7 pctdiff=-0.203 rhCtxWM: 218468.298 219036.500 diff= -568.2 pctdiff=-0.260 SubCortGMVol 48844.000 SupraTentVol 910986.888 (909786.000) diff=1200.888 pctdiff=0.132 SupraTentVolNotVent 872719.888 (871519.000) diff=1200.888 pctdiff=0.138 BrainSegVol 1028098.000 (1024320.000) diff=3778.000 pctdiff=0.367 BrainSegVolNotVent 984938.000 (984686.888) diff=251.112 pctdiff=0.025 BrainSegVolNotVent 984938.000 CerebellumVol 113113.000 VentChorVol 38267.000 3rd4th5thCSF 4893.000 CSFVol 1150.000, OptChiasmVol 271.000 MaskVol 1513194.000 Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 390 segmentations Computing statistics for each segmentation 0 3000 wm-lh-unknown 0 0.000 1 3001 wm-lh-bankssts 3107 3106.945 2 3002 wm-lh-caudalanteriorcingulate 3095 3094.604 3 3003 wm-lh-caudalmiddlefrontal 7281 7280.675 4 3004 wm-lh-corpuscallosum 0 0.000 5 3005 wm-lh-cuneus 2252 2252.060 6 3006 wm-lh-entorhinal 642 641.816 7 3007 wm-lh-fusiform 5394 5394.103 8 3008 wm-lh-inferiorparietal 8277 8277.201 9 3009 wm-lh-inferiortemporal 5475 5474.916 10 3010 wm-lh-isthmuscingulate 3779 3778.727 11 3011 wm-lh-lateraloccipital 10311 10311.034 12 3012 wm-lh-lateralorbitofrontal 5903 5903.159 13 3013 wm-lh-lingual 4233 4232.894 14 3014 wm-lh-medialorbitofrontal 3545 3545.068 15 3015 wm-lh-middletemporal 4949 4948.853 16 3016 wm-lh-parahippocampal 1278 1277.694 17 3017 wm-lh-paracentral 4472 4471.855 18 3018 wm-lh-parsopercularis 3833 3832.561 19 3019 wm-lh-parsorbitalis 810 809.935 20 3020 wm-lh-parstriangularis 2336 2335.634 21 3021 wm-lh-pericalcarine 3157 3156.749 22 3022 wm-lh-postcentral 7522 7521.862 23 3023 wm-lh-posteriorcingulate 4384 4383.631 24 3024 wm-lh-precentral 13834 13833.722 25 3025 wm-lh-precuneus 9284 9283.985 26 3026 wm-lh-rostralanteriorcingulate 2372 2371.657 27 3027 wm-lh-rostralmiddlefrontal 12023 12022.851 28 3028 wm-lh-superiorfrontal 17028 17028.262 29 3029 wm-lh-superiorparietal 13480 13480.251 30 3030 wm-lh-superiortemporal 6372 6372.415 31 3031 wm-lh-supramarginal 8479 8478.593 32 3032 wm-lh-frontalpole 151 151.449 33 3033 wm-lh-temporalpole 654 654.446 34 3034 wm-lh-transversetemporal 969 968.869 35 3035 wm-lh-insula 8435 8434.771 36 3100 wm-lh-Unknown 0 0.000 37 3101 wm-lh-Corpus_callosum 0 0.000 38 3102 wm-lh-G_and_S_Insula_ONLY_AVERAGE 0 0.000 39 3103 wm-lh-G_cingulate-Isthmus 0 0.000 40 3104 wm-lh-G_cingulate-Main_part 0 0.000 41 3105 wm-lh-G_cuneus 0 0.000 42 3106 wm-lh-G_frontal_inf-Opercular_part 0 0.000 43 3107 wm-lh-G_frontal_inf-Orbital_part 0 0.000 44 3108 wm-lh-G_frontal_inf-Triangular_part 0 0.000 45 3109 wm-lh-G_frontal_middle 0 0.000 46 3110 wm-lh-G_frontal_superior 0 0.000 47 3111 wm-lh-G_frontomarginal 0 0.000 48 3112 wm-lh-G_insular_long 0 0.000 49 3113 wm-lh-G_insular_short 0 0.000 50 3114 wm-lh-G_and_S_occipital_inferior 0 0.000 51 3115 wm-lh-G_occipital_middle 0 0.000 52 3116 wm-lh-G_occipital_superior 0 0.000 53 3117 wm-lh-G_occipit-temp_lat-Or_fusiform 0 0.000 54 3118 wm-lh-G_occipit-temp_med-Lingual_part 0 0.000 55 3119 wm-lh-G_occipit-temp_med-Parahippocampal_part 0 0.000 56 3120 wm-lh-G_orbital 0 0.000 57 3121 wm-lh-G_paracentral 0 0.000 58 3122 wm-lh-G_parietal_inferior-Angular_part 0 0.000 59 3123 wm-lh-G_parietal_inferior-Supramarginal_part 0 0.000 60 3124 wm-lh-G_parietal_superior 0 0.000 61 3125 wm-lh-G_postcentral 0 0.000 62 3126 wm-lh-G_precentral 0 0.000 63 3127 wm-lh-G_precuneus 0 0.000 64 3128 wm-lh-G_rectus 0 0.000 65 3129 wm-lh-G_subcallosal 0 0.000 66 3130 wm-lh-G_subcentral 0 0.000 67 3131 wm-lh-G_temporal_inferior 0 0.000 68 3132 wm-lh-G_temporal_middle 0 0.000 69 3133 wm-lh-G_temp_sup-G_temp_transv_and_interm_S 0 0.000 70 3134 wm-lh-G_temp_sup-Lateral_aspect 0 0.000 71 3135 wm-lh-G_temp_sup-Planum_polare 0 0.000 72 3136 wm-lh-G_temp_sup-Planum_tempolare 0 0.000 73 3137 wm-lh-G_and_S_transverse_frontopolar 0 0.000 74 3138 wm-lh-Lat_Fissure-ant_sgt-ramus_horizontal 0 0.000 75 3139 wm-lh-Lat_Fissure-ant_sgt-ramus_vertical 0 0.000 76 3140 wm-lh-Lat_Fissure-post_sgt 0 0.000 77 3141 wm-lh-Medial_wall 0 0.000 78 3142 wm-lh-Pole_occipital 0 0.000 79 3143 wm-lh-Pole_temporal 0 0.000 80 3144 wm-lh-S_calcarine 0 0.000 81 3145 wm-lh-S_central 0 0.000 82 3146 wm-lh-S_central_insula 0 0.000 83 3147 wm-lh-S_cingulate-Main_part_and_Intracingulate 0 0.000 84 3148 wm-lh-S_cingulate-Marginalis_part 0 0.000 85 3149 wm-lh-S_circular_insula_anterior 0 0.000 86 3150 wm-lh-S_circular_insula_inferior 0 0.000 87 3151 wm-lh-S_circular_insula_superior 0 0.000 88 3152 wm-lh-S_collateral_transverse_ant 0 0.000 89 3153 wm-lh-S_collateral_transverse_post 0 0.000 90 3154 wm-lh-S_frontal_inferior 0 0.000 91 3155 wm-lh-S_frontal_middle 0 0.000 92 3156 wm-lh-S_frontal_superior 0 0.000 93 3157 wm-lh-S_frontomarginal 0 0.000 94 3158 wm-lh-S_intermedius_primus-Jensen 0 0.000 95 3159 wm-lh-S_intraparietal-and_Parietal_transverse 0 0.000 96 3160 wm-lh-S_occipital_anterior 0 0.000 97 3161 wm-lh-S_occipital_middle_and_Lunatus 0 0.000 98 3162 wm-lh-S_occipital_superior_and_transversalis 0 0.000 99 3163 wm-lh-S_occipito-temporal_lateral 0 0.000 100 3164 wm-lh-S_occipito-temporal_medial_and_S_Lingual 0 0.000 101 3165 wm-lh-S_orbital-H_shapped 0 0.000 102 3166 wm-lh-S_orbital_lateral 0 0.000 103 3167 wm-lh-S_orbital_medial-Or_olfactory 0 0.000 104 3168 wm-lh-S_paracentral 0 0.000 105 3169 wm-lh-S_parieto_occipital 0 0.000 106 3170 wm-lh-S_pericallosal 0 0.000 107 3171 wm-lh-S_postcentral 0 0.000 108 3172 wm-lh-S_precentral-Inferior-part 0 0.000 109 3173 wm-lh-S_precentral-Superior-part 0 0.000 110 3174 wm-lh-S_subcentral_ant 0 0.000 111 3175 wm-lh-S_subcentral_post 0 0.000 112 3176 wm-lh-S_suborbital 0 0.000 113 3177 wm-lh-S_subparietal 0 0.000 114 3178 wm-lh-S_supracingulate 0 0.000 115 3179 wm-lh-S_temporal_inferior 0 0.000 116 3180 wm-lh-S_temporal_superior 0 0.000 117 3181 wm-lh-S_temporal_transverse 0 0.000 118 4000 wm-rh-unknown 0 0.000 119 4001 wm-rh-bankssts 2590 2590.280 120 4002 wm-rh-caudalanteriorcingulate 3098 3097.543 121 4003 wm-rh-caudalmiddlefrontal 6580 6579.855 122 4004 wm-rh-corpuscallosum 0 0.000 123 4005 wm-rh-cuneus 2431 2430.833 124 4006 wm-rh-entorhinal 703 703.018 125 4007 wm-rh-fusiform 5887 5887.356 126 4008 wm-rh-inferiorparietal 11164 11163.923 127 4009 wm-rh-inferiortemporal 5833 5832.603 128 4010 wm-rh-isthmuscingulate 3249 3249.279 129 4011 wm-rh-lateraloccipital 10479 10478.540 130 4012 wm-rh-lateralorbitofrontal 5806 5805.607 131 4013 wm-rh-lingual 4941 4941.394 132 4014 wm-rh-medialorbitofrontal 3052 3051.768 133 4015 wm-rh-middletemporal 5488 5487.572 134 4016 wm-rh-parahippocampal 1254 1254.474 135 4017 wm-rh-paracentral 4907 4907.136 136 4018 wm-rh-parsopercularis 3441 3441.013 137 4019 wm-rh-parsorbitalis 1075 1075.385 138 4020 wm-rh-parstriangularis 2973 2972.988 139 4021 wm-rh-pericalcarine 3697 3696.929 140 4022 wm-rh-postcentral 7400 7399.585 141 4023 wm-rh-posteriorcingulate 4544 4543.554 142 4024 wm-rh-precentral 16205 16205.121 143 4025 wm-rh-precuneus 9297 9297.189 144 4026 wm-rh-rostralanteriorcingulate 2537 2537.148 145 4027 wm-rh-rostralmiddlefrontal 12573 12572.815 146 4028 wm-rh-superiorfrontal 16040 16039.578 147 4029 wm-rh-superiorparietal 12542 12542.115 148 4030 wm-rh-superiortemporal 5940 5939.688 149 4031 wm-rh-supramarginal 8418 8417.542 150 4032 wm-rh-frontalpole 215 214.958 151 4033 wm-rh-temporalpole 557 556.584 152 4034 wm-rh-transversetemporal 646 645.524 153 4035 wm-rh-insula 7605 7604.523 154 4100 wm-rh-Unknown 0 0.000 155 4101 wm-rh-Corpus_callosum 0 0.000 156 4102 wm-rh-G_and_S_Insula_ONLY_AVERAGE 0 0.000 157 4103 wm-rh-G_cingulate-Isthmus 0 0.000 158 4104 wm-rh-G_cingulate-Main_part 0 0.000 159 4105 wm-rh-G_cuneus 0 0.000 160 4106 wm-rh-G_frontal_inf-Opercular_part 0 0.000 161 4107 wm-rh-G_frontal_inf-Orbital_part 0 0.000 162 4108 wm-rh-G_frontal_inf-Triangular_part 0 0.000 163 4109 wm-rh-G_frontal_middle 0 0.000 164 4110 wm-rh-G_frontal_superior 0 0.000 165 4111 wm-rh-G_frontomarginal 0 0.000 166 4112 wm-rh-G_insular_long 0 0.000 167 4113 wm-rh-G_insular_short 0 0.000 168 4114 wm-rh-G_and_S_occipital_inferior 0 0.000 169 4115 wm-rh-G_occipital_middle 0 0.000 170 4116 wm-rh-G_occipital_superior 0 0.000 171 4117 wm-rh-G_occipit-temp_lat-Or_fusiform 0 0.000 172 4118 wm-rh-G_occipit-temp_med-Lingual_part 0 0.000 173 4119 wm-rh-G_occipit-temp_med-Parahippocampal_part 0 0.000 174 4120 wm-rh-G_orbital 0 0.000 175 4121 wm-rh-G_paracentral 0 0.000 176 4122 wm-rh-G_parietal_inferior-Angular_part 0 0.000 177 4123 wm-rh-G_parietal_inferior-Supramarginal_part 0 0.000 178 4124 wm-rh-G_parietal_superior 0 0.000 179 4125 wm-rh-G_postcentral 0 0.000 180 4126 wm-rh-G_precentral 0 0.000 181 4127 wm-rh-G_precuneus 0 0.000 182 4128 wm-rh-G_rectus 0 0.000 183 4129 wm-rh-G_subcallosal 0 0.000 184 4130 wm-rh-G_subcentral 0 0.000 185 4131 wm-rh-G_temporal_inferior 0 0.000 186 4132 wm-rh-G_temporal_middle 0 0.000 187 4133 wm-rh-G_temp_sup-G_temp_transv_and_interm_S 0 0.000 188 4134 wm-rh-G_temp_sup-Lateral_aspect 0 0.000 189 4135 wm-rh-G_temp_sup-Planum_polare 0 0.000 190 4136 wm-rh-G_temp_sup-Planum_tempolare 0 0.000 191 4137 wm-rh-G_and_S_transverse_frontopolar 0 0.000 192 4138 wm-rh-Lat_Fissure-ant_sgt-ramus_horizontal 0 0.000 193 4139 wm-rh-Lat_Fissure-ant_sgt-ramus_vertical 0 0.000 194 4140 wm-rh-Lat_Fissure-post_sgt 0 0.000 195 4141 wm-rh-Medial_wall 0 0.000 196 4142 wm-rh-Pole_occipital 0 0.000 197 4143 wm-rh-Pole_temporal 0 0.000 198 4144 wm-rh-S_calcarine 0 0.000 199 4145 wm-rh-S_central 0 0.000 200 4146 wm-rh-S_central_insula 0 0.000 201 4147 wm-rh-S_cingulate-Main_part_and_Intracingulate 0 0.000 202 4148 wm-rh-S_cingulate-Marginalis_part 0 0.000 203 4149 wm-rh-S_circular_insula_anterior 0 0.000 204 4150 wm-rh-S_circular_insula_inferior 0 0.000 205 4151 wm-rh-S_circular_insula_superior 0 0.000 206 4152 wm-rh-S_collateral_transverse_ant 0 0.000 207 4153 wm-rh-S_collateral_transverse_post 0 0.000 208 4154 wm-rh-S_frontal_inferior 0 0.000 209 4155 wm-rh-S_frontal_middle 0 0.000 210 4156 wm-rh-S_frontal_superior 0 0.000 211 4157 wm-rh-S_frontomarginal 0 0.000 212 4158 wm-rh-S_intermedius_primus-Jensen 0 0.000 213 4159 wm-rh-S_intraparietal-and_Parietal_transverse 0 0.000 214 4160 wm-rh-S_occipital_anterior 0 0.000 215 4161 wm-rh-S_occipital_middle_and_Lunatus 0 0.000 216 4162 wm-rh-S_occipital_superior_and_transversalis 0 0.000 217 4163 wm-rh-S_occipito-temporal_lateral 0 0.000 218 4164 wm-rh-S_occipito-temporal_medial_and_S_Lingual 0 0.000 219 4165 wm-rh-S_orbital-H_shapped 0 0.000 220 4166 wm-rh-S_orbital_lateral 0 0.000 221 4167 wm-rh-S_orbital_medial-Or_olfactory 0 0.000 222 4168 wm-rh-S_paracentral 0 0.000 223 4169 wm-rh-S_parieto_occipital 0 0.000 224 4170 wm-rh-S_pericallosal 0 0.000 225 4171 wm-rh-S_postcentral 0 0.000 226 4172 wm-rh-S_precentral-Inferior-part 0 0.000 227 4173 wm-rh-S_precentral-Superior-part 0 0.000 228 4174 wm-rh-S_subcentral_ant 0 0.000 229 4175 wm-rh-S_subcentral_post 0 0.000 230 4176 wm-rh-S_suborbital 0 0.000 231 4177 wm-rh-S_subparietal 0 0.000 232 4178 wm-rh-S_supracingulate 0 0.000 233 4179 wm-rh-S_temporal_inferior 0 0.000 234 4180 wm-rh-S_temporal_superior 0 0.000 235 4181 wm-rh-S_temporal_transverse 0 0.000 236 5001 Left-UnsegmentedWhiteMatter 26257 26256.764 237 5002 Right-UnsegmentedWhiteMatter 28585 28584.770 238 13100 wm_lh_Unknown 0 0.000 239 13101 wm_lh_G_and_S_frontomargin 0 0.000 240 13102 wm_lh_G_and_S_occipital_inf 0 0.000 241 13103 wm_lh_G_and_S_paracentral 0 0.000 242 13104 wm_lh_G_and_S_subcentral 0 0.000 243 13105 wm_lh_G_and_S_transv_frontopol 0 0.000 244 13106 wm_lh_G_and_S_cingul-Ant 0 0.000 245 13107 wm_lh_G_and_S_cingul-Mid-Ant 0 0.000 246 13108 wm_lh_G_and_S_cingul-Mid-Post 0 0.000 247 13109 wm_lh_G_cingul-Post-dorsal 0 0.000 248 13110 wm_lh_G_cingul-Post-ventral 0 0.000 249 13111 wm_lh_G_cuneus 0 0.000 250 13112 wm_lh_G_front_inf-Opercular 0 0.000 251 13113 wm_lh_G_front_inf-Orbital 0 0.000 252 13114 wm_lh_G_front_inf-Triangul 0 0.000 253 13115 wm_lh_G_front_middle 0 0.000 254 13116 wm_lh_G_front_sup 0 0.000 255 13117 wm_lh_G_Ins_lg_and_S_cent_ins 0 0.000 256 13118 wm_lh_G_insular_short 0 0.000 257 13119 wm_lh_G_occipital_middle 0 0.000 258 13120 wm_lh_G_occipital_sup 0 0.000 259 13121 wm_lh_G_oc-temp_lat-fusifor 0 0.000 260 13122 wm_lh_G_oc-temp_med-Lingual 0 0.000 261 13123 wm_lh_G_oc-temp_med-Parahip 0 0.000 262 13124 wm_lh_G_orbital 0 0.000 263 13125 wm_lh_G_pariet_inf-Angular 0 0.000 264 13126 wm_lh_G_pariet_inf-Supramar 0 0.000 265 13127 wm_lh_G_parietal_sup 0 0.000 266 13128 wm_lh_G_postcentral 0 0.000 267 13129 wm_lh_G_precentral 0 0.000 268 13130 wm_lh_G_precuneus 0 0.000 269 13131 wm_lh_G_rectus 0 0.000 270 13132 wm_lh_G_subcallosal 0 0.000 271 13133 wm_lh_G_temp_sup-G_T_transv 0 0.000 272 13134 wm_lh_G_temp_sup-Lateral 0 0.000 273 13135 wm_lh_G_temp_sup-Plan_polar 0 0.000 274 13136 wm_lh_G_temp_sup-Plan_tempo 0 0.000 275 13137 wm_lh_G_temporal_inf 0 0.000 276 13138 wm_lh_G_temporal_middle 0 0.000 277 13139 wm_lh_Lat_Fis-ant-Horizont 0 0.000 278 13140 wm_lh_Lat_Fis-ant-Vertical 0 0.000 279 13141 wm_lh_Lat_Fis-post 0 0.000 280 13142 wm_lh_Medial_wall 0 0.000 281 13143 wm_lh_Pole_occipital 0 0.000 282 13144 wm_lh_Pole_temporal 0 0.000 283 13145 wm_lh_S_calcarine 0 0.000 284 13146 wm_lh_S_central 0 0.000 285 13147 wm_lh_S_cingul-Marginalis 0 0.000 286 13148 wm_lh_S_circular_insula_ant 0 0.000 287 13149 wm_lh_S_circular_insula_inf 0 0.000 288 13150 wm_lh_S_circular_insula_sup 0 0.000 289 13151 wm_lh_S_collat_transv_ant 0 0.000 290 13152 wm_lh_S_collat_transv_post 0 0.000 291 13153 wm_lh_S_front_inf 0 0.000 292 13154 wm_lh_S_front_middle 0 0.000 293 13155 wm_lh_S_front_sup 0 0.000 294 13156 wm_lh_S_interm_prim-Jensen 0 0.000 295 13157 wm_lh_S_intrapariet_and_P_trans 0 0.000 296 13158 wm_lh_S_oc_middle_and_Lunatus 0 0.000 297 13159 wm_lh_S_oc_sup_and_transversal 0 0.000 298 13160 wm_lh_S_occipital_ant 0 0.000 299 13161 wm_lh_S_oc-temp_lat 0 0.000 300 13162 wm_lh_S_oc-temp_med_and_Lingual 0 0.000 301 13163 wm_lh_S_orbital_lateral 0 0.000 302 13164 wm_lh_S_orbital_med-olfact 0 0.000 303 13165 wm_lh_S_orbital-H_Shaped 0 0.000 304 13166 wm_lh_S_parieto_occipital 0 0.000 305 13167 wm_lh_S_pericallosal 0 0.000 306 13168 wm_lh_S_postcentral 0 0.000 307 13169 wm_lh_S_precentral-inf-part 0 0.000 308 13170 wm_lh_S_precentral-sup-part 0 0.000 309 13171 wm_lh_S_suborbital 0 0.000 310 13172 wm_lh_S_subparietal 0 0.000 311 13173 wm_lh_S_temporal_inf 0 0.000 312 13174 wm_lh_S_temporal_sup 0 0.000 313 13175 wm_lh_S_temporal_transverse 0 0.000 314 14100 wm_rh_Unknown 0 0.000 315 14101 wm_rh_G_and_S_frontomargin 0 0.000 316 14102 wm_rh_G_and_S_occipital_inf 0 0.000 317 14103 wm_rh_G_and_S_paracentral 0 0.000 318 14104 wm_rh_G_and_S_subcentral 0 0.000 319 14105 wm_rh_G_and_S_transv_frontopol 0 0.000 320 14106 wm_rh_G_and_S_cingul-Ant 0 0.000 321 14107 wm_rh_G_and_S_cingul-Mid-Ant 0 0.000 322 14108 wm_rh_G_and_S_cingul-Mid-Post 0 0.000 323 14109 wm_rh_G_cingul-Post-dorsal 0 0.000 324 14110 wm_rh_G_cingul-Post-ventral 0 0.000 325 14111 wm_rh_G_cuneus 0 0.000 326 14112 wm_rh_G_front_inf-Opercular 0 0.000 327 14113 wm_rh_G_front_inf-Orbital 0 0.000 328 14114 wm_rh_G_front_inf-Triangul 0 0.000 329 14115 wm_rh_G_front_middle 0 0.000 330 14116 wm_rh_G_front_sup 0 0.000 331 14117 wm_rh_G_Ins_lg_and_S_cent_ins 0 0.000 332 14118 wm_rh_G_insular_short 0 0.000 333 14119 wm_rh_G_occipital_middle 0 0.000 334 14120 wm_rh_G_occipital_sup 0 0.000 335 14121 wm_rh_G_oc-temp_lat-fusifor 0 0.000 336 14122 wm_rh_G_oc-temp_med-Lingual 0 0.000 337 14123 wm_rh_G_oc-temp_med-Parahip 0 0.000 338 14124 wm_rh_G_orbital 0 0.000 339 14125 wm_rh_G_pariet_inf-Angular 0 0.000 340 14126 wm_rh_G_pariet_inf-Supramar 0 0.000 341 14127 wm_rh_G_parietal_sup 0 0.000 342 14128 wm_rh_G_postcentral 0 0.000 343 14129 wm_rh_G_precentral 0 0.000 344 14130 wm_rh_G_precuneus 0 0.000 345 14131 wm_rh_G_rectus 0 0.000 346 14132 wm_rh_G_subcallosal 0 0.000 347 14133 wm_rh_G_temp_sup-G_T_transv 0 0.000 348 14134 wm_rh_G_temp_sup-Lateral 0 0.000 349 14135 wm_rh_G_temp_sup-Plan_polar 0 0.000 350 14136 wm_rh_G_temp_sup-Plan_tempo 0 0.000 351 14137 wm_rh_G_temporal_inf 0 0.000 352 14138 wm_rh_G_temporal_middle 0 0.000 353 14139 wm_rh_Lat_Fis-ant-Horizont 0 0.000 354 14140 wm_rh_Lat_Fis-ant-Vertical 0 0.000 355 14141 wm_rh_Lat_Fis-post 0 0.000 356 14142 wm_rh_Medial_wall 0 0.000 357 14143 wm_rh_Pole_occipital 0 0.000 358 14144 wm_rh_Pole_temporal 0 0.000 359 14145 wm_rh_S_calcarine 0 0.000 360 14146 wm_rh_S_central 0 0.000 361 14147 wm_rh_S_cingul-Marginalis 0 0.000 362 14148 wm_rh_S_circular_insula_ant 0 0.000 363 14149 wm_rh_S_circular_insula_inf 0 0.000 364 14150 wm_rh_S_circular_insula_sup 0 0.000 365 14151 wm_rh_S_collat_transv_ant 0 0.000 366 14152 wm_rh_S_collat_transv_post 0 0.000 367 14153 wm_rh_S_front_inf 0 0.000 368 14154 wm_rh_S_front_middle 0 0.000 369 14155 wm_rh_S_front_sup 0 0.000 370 14156 wm_rh_S_interm_prim-Jensen 0 0.000 371 14157 wm_rh_S_intrapariet_and_P_trans 0 0.000 372 14158 wm_rh_S_oc_middle_and_Lunatus 0 0.000 373 14159 wm_rh_S_oc_sup_and_transversal 0 0.000 374 14160 wm_rh_S_occipital_ant 0 0.000 375 14161 wm_rh_S_oc-temp_lat 0 0.000 376 14162 wm_rh_S_oc-temp_med_and_Lingual 0 0.000 377 14163 wm_rh_S_orbital_lateral 0 0.000 378 14164 wm_rh_S_orbital_med-olfact 0 0.000 379 14165 wm_rh_S_orbital-H_Shaped 0 0.000 380 14166 wm_rh_S_parieto_occipital 0 0.000 381 14167 wm_rh_S_pericallosal 0 0.000 382 14168 wm_rh_S_postcentral 0 0.000 383 14169 wm_rh_S_precentral-inf-part 0 0.000 384 14170 wm_rh_S_precentral-sup-part 0 0.000 385 14171 wm_rh_S_suborbital 0 0.000 386 14172 wm_rh_S_subparietal 0 0.000 387 14173 wm_rh_S_temporal_inf 0 0.000 388 14174 wm_rh_S_temporal_sup 0 0.000 389 14175 wm_rh_S_temporal_transverse 0 0.000 Reporting on 70 segmentations mri_segstats done /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label #-------------------------------------------- #@# BA Labels lh Fri Jan 22 13:57:38 EET 2016 \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA1.label --trgsubject T40_OM_Post --trglabel ./lh.BA1.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA1.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA1.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 4129 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4129 nlabel points Performing mapping from target back to the source label 130269 Number of reverse mapping hits = 307 Checking for and removing duplicates Writing label file ./lh.BA1.label 4436 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA2.label --trgsubject T40_OM_Post --trglabel ./lh.BA2.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA2.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA2.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 7909 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 7909 nlabel points Performing mapping from target back to the source label 130269 Number of reverse mapping hits = 477 Checking for and removing duplicates Writing label file ./lh.BA2.label 8386 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA3a.label --trgsubject T40_OM_Post --trglabel ./lh.BA3a.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA3a.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA3a.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 4077 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4077 nlabel points Performing mapping from target back to the source label 130269 Number of reverse mapping hits = 103 Checking for and removing duplicates Writing label file ./lh.BA3a.label 4180 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA3b.label --trgsubject T40_OM_Post --trglabel ./lh.BA3b.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA3b.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA3b.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 5983 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5983 nlabel points Performing mapping from target back to the source label 130269 Number of reverse mapping hits = 278 Checking for and removing duplicates Writing label file ./lh.BA3b.label 6261 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA4a.label --trgsubject T40_OM_Post --trglabel ./lh.BA4a.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA4a.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA4a.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 5784 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5784 nlabel points Performing mapping from target back to the source label 130269 Number of reverse mapping hits = 587 Checking for and removing duplicates Writing label file ./lh.BA4a.label 6371 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA4p.label --trgsubject T40_OM_Post --trglabel ./lh.BA4p.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA4p.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA4p.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 4070 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4070 nlabel points Performing mapping from target back to the source label 130269 Number of reverse mapping hits = 193 Checking for and removing duplicates Writing label file ./lh.BA4p.label 4263 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA6.label --trgsubject T40_OM_Post --trglabel ./lh.BA6.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA6.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA6.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 13589 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 13589 nlabel points Performing mapping from target back to the source label 130269 Number of reverse mapping hits = 2038 Checking for and removing duplicates Writing label file ./lh.BA6.label 15627 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA44.label --trgsubject T40_OM_Post --trglabel ./lh.BA44.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA44.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA44.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 4181 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4181 nlabel points Performing mapping from target back to the source label 130269 Number of reverse mapping hits = 850 Checking for and removing duplicates Writing label file ./lh.BA44.label 5031 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA45.label --trgsubject T40_OM_Post --trglabel ./lh.BA45.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA45.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA45.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 3422 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3422 nlabel points Performing mapping from target back to the source label 130269 Number of reverse mapping hits = 858 Checking for and removing duplicates Writing label file ./lh.BA45.label 4280 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.V1.label --trgsubject T40_OM_Post --trglabel ./lh.V1.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.V1.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.V1.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 4641 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4641 nlabel points Performing mapping from target back to the source label 130269 Number of reverse mapping hits = 1372 Checking for and removing duplicates Writing label file ./lh.V1.label 6013 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.V2.label --trgsubject T40_OM_Post --trglabel ./lh.V2.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.V2.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.V2.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 8114 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 8114 nlabel points Performing mapping from target back to the source label 130269 Number of reverse mapping hits = 2952 Checking for and removing duplicates Writing label file ./lh.V2.label 11066 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.MT.label --trgsubject T40_OM_Post --trglabel ./lh.MT.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.MT.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.MT.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 2018 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2018 nlabel points Performing mapping from target back to the source label 130269 Number of reverse mapping hits = 288 Checking for and removing duplicates Writing label file ./lh.MT.label 2306 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.perirhinal.label --trgsubject T40_OM_Post --trglabel ./lh.perirhinal.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.perirhinal.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.perirhinal.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 1199 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1199 nlabel points Performing mapping from target back to the source label 130269 Number of reverse mapping hits = 139 Checking for and removing duplicates Writing label file ./lh.perirhinal.label 1338 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA1.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.BA1.thresh.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA1.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA1.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 1014 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1014 nlabel points Performing mapping from target back to the source label 130269 Number of reverse mapping hits = 96 Checking for and removing duplicates Writing label file ./lh.BA1.thresh.label 1110 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA2.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.BA2.thresh.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA2.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA2.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 2092 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2092 nlabel points Performing mapping from target back to the source label 130269 Number of reverse mapping hits = 211 Checking for and removing duplicates Writing label file ./lh.BA2.thresh.label 2303 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA3a.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.BA3a.thresh.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA3a.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA3a.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 1504 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1504 nlabel points Performing mapping from target back to the source label 130269 Number of reverse mapping hits = 29 Checking for and removing duplicates Writing label file ./lh.BA3a.thresh.label 1533 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA3b.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.BA3b.thresh.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA3b.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA3b.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 1996 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1996 nlabel points Performing mapping from target back to the source label 130269 Number of reverse mapping hits = 76 Checking for and removing duplicates Writing label file ./lh.BA3b.thresh.label 2072 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA4a.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.BA4a.thresh.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA4a.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA4a.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 2319 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2319 nlabel points Performing mapping from target back to the source label 130269 Number of reverse mapping hits = 217 Checking for and removing duplicates Writing label file ./lh.BA4a.thresh.label 2536 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA4p.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.BA4p.thresh.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA4p.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA4p.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 1549 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1549 nlabel points Performing mapping from target back to the source label 130269 Number of reverse mapping hits = 36 Checking for and removing duplicates Writing label file ./lh.BA4p.thresh.label 1585 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA6.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.BA6.thresh.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA6.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA6.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 7035 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 7035 nlabel points Performing mapping from target back to the source label 130269 Number of reverse mapping hits = 936 Checking for and removing duplicates Writing label file ./lh.BA6.thresh.label 7971 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA44.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.BA44.thresh.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA44.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA44.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 1912 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1912 nlabel points Performing mapping from target back to the source label 130269 Number of reverse mapping hits = 357 Checking for and removing duplicates Writing label file ./lh.BA44.thresh.label 2269 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA45.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.BA45.thresh.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.BA45.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.BA45.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 1151 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1151 nlabel points Performing mapping from target back to the source label 130269 Number of reverse mapping hits = 348 Checking for and removing duplicates Writing label file ./lh.BA45.thresh.label 1499 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.V1.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.V1.thresh.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.V1.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.V1.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 3405 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3405 nlabel points Performing mapping from target back to the source label 130269 Number of reverse mapping hits = 894 Checking for and removing duplicates Writing label file ./lh.V1.thresh.label 4299 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.V2.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.V2.thresh.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.V2.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.V2.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 3334 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3334 nlabel points Performing mapping from target back to the source label 130269 Number of reverse mapping hits = 1492 Checking for and removing duplicates Writing label file ./lh.V2.thresh.label 4826 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.MT.thresh.label --trgsubject T40_OM_Post --trglabel ./lh.MT.thresh.label --hemi lh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/lh.MT.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./lh.MT.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 513 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 513 nlabel points Performing mapping from target back to the source label 130269 Number of reverse mapping hits = 70 Checking for and removing duplicates Writing label file ./lh.MT.thresh.label 583 mri_label2label: Done \n mris_label2annot --s T40_OM_Post --hemi lh --ctab /Applications/freesurfer/average/colortable_BA.txt --l lh.BA1.label --l lh.BA2.label --l lh.BA3a.label --l lh.BA3b.label --l lh.BA4a.label --l lh.BA4p.label --l lh.BA6.label --l lh.BA44.label --l lh.BA45.label --l lh.V1.label --l lh.V2.label --l lh.MT.label --l lh.perirhinal.label --a BA --maxstatwinner --noverbose \n Reading ctab /Applications/freesurfer/average/colortable_BA.txt Number of ctab entries 14 $Id: mris_label2annot.c,v 1.17 2011/03/02 00:04:32 nicks Exp $ cwd /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label cmdline mris_label2annot --s T40_OM_Post --hemi lh --ctab /Applications/freesurfer/average/colortable_BA.txt --l lh.BA1.label --l lh.BA2.label --l lh.BA3a.label --l lh.BA3b.label --l lh.BA4a.label --l lh.BA4p.label --l lh.BA6.label --l lh.BA44.label --l lh.BA45.label --l lh.V1.label --l lh.V2.label --l lh.MT.label --l lh.perirhinal.label --a BA --maxstatwinner --noverbose sysname Darwin hostname MacBook-Pro-di-Marco.local machine x86_64 user marco subject T40_OM_Post hemi lh SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects ColorTable /Applications/freesurfer/average/colortable_BA.txt AnnotName BA nlables 13 LabelThresh 0 0.000000 Loading /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.orig 1 1530880 BA1 2 16749699 BA2 3 16711680 BA3a 4 3368703 BA3b 5 1376196 BA4a 6 13382655 BA4p 7 10036737 BA6 8 2490521 BA44 9 39283 BA45 10 3993 V1 11 8508928 V2 12 10027163 MT 13 16422433 perirhinal Mapping unhit to unknown Found 90365 unhit vertices Writing annot to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/lh.BA.annot \n mris_label2annot --s T40_OM_Post --hemi lh --ctab /Applications/freesurfer/average/colortable_BA.txt --l lh.BA1.thresh.label --l lh.BA2.thresh.label --l lh.BA3a.thresh.label --l lh.BA3b.thresh.label --l lh.BA4a.thresh.label --l lh.BA4p.thresh.label --l lh.BA6.thresh.label --l lh.BA44.thresh.label --l lh.BA45.thresh.label --l lh.V1.thresh.label --l lh.V2.thresh.label --l lh.MT.thresh.label --a BA.thresh --maxstatwinner --noverbose \n Reading ctab /Applications/freesurfer/average/colortable_BA.txt Number of ctab entries 14 $Id: mris_label2annot.c,v 1.17 2011/03/02 00:04:32 nicks Exp $ cwd /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label cmdline mris_label2annot --s T40_OM_Post --hemi lh --ctab /Applications/freesurfer/average/colortable_BA.txt --l lh.BA1.thresh.label --l lh.BA2.thresh.label --l lh.BA3a.thresh.label --l lh.BA3b.thresh.label --l lh.BA4a.thresh.label --l lh.BA4p.thresh.label --l lh.BA6.thresh.label --l lh.BA44.thresh.label --l lh.BA45.thresh.label --l lh.V1.thresh.label --l lh.V2.thresh.label --l lh.MT.thresh.label --a BA.thresh --maxstatwinner --noverbose sysname Darwin hostname MacBook-Pro-di-Marco.local machine x86_64 user marco subject T40_OM_Post hemi lh SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects ColorTable /Applications/freesurfer/average/colortable_BA.txt AnnotName BA.thresh nlables 12 LabelThresh 0 0.000000 Loading /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.orig 1 1530880 BA1 2 16749699 BA2 3 16711680 BA3a 4 3368703 BA3b 5 1376196 BA4a 6 13382655 BA4p 7 10036737 BA6 8 2490521 BA44 9 39283 BA45 10 3993 V1 11 8508928 V2 12 10027163 MT Mapping unhit to unknown Found 108402 unhit vertices Writing annot to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/lh.BA.thresh.annot \n mris_anatomical_stats -mgz -f ../stats/lh.BA.stats -b -a ./lh.BA.annot -c ./BA.ctab T40_OM_Post lh white \n computing statistics for each annotation in ./lh.BA.annot. reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white... reading input pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.pial... reading input white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white... INFO: assuming MGZ format for volumes. reading colortable from annotation file... colortable with 14 entries read (originally /Applications/freesurfer/average/colortable_BA.txt) Saving annotation colortable ./BA.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1170 551 1432 2.015 0.477 0.161 0.102 39 5.4 BA1 3818 2318 4662 2.030 0.512 0.135 0.060 66 10.1 BA2 918 670 840 1.624 0.394 0.184 0.083 15 3.1 BA3a 2133 1348 2553 1.689 0.538 0.135 0.057 28 5.4 BA3b 1839 1046 2687 2.264 0.700 0.159 0.104 88 7.8 BA4a 1102 817 1414 1.800 0.738 0.156 0.063 15 3.4 BA4p 10366 5693 16431 2.520 0.664 0.156 0.168 486 74.1 BA6 2242 1480 3744 2.306 0.527 0.140 0.064 31 5.7 BA44 2449 1685 4289 2.201 0.511 0.146 0.062 40 6.2 BA45 2922 1973 3364 1.648 0.518 0.175 0.100 67 10.2 V1 8462 4830 10016 1.923 0.516 0.160 0.084 195 31.7 V2 1553 1058 2594 2.256 0.530 0.150 0.055 26 3.3 MT 930 629 2446 2.946 0.946 0.171 0.092 24 3.6 perirhinal \n mris_anatomical_stats -mgz -f ../stats/lh.BA.thresh.stats -b -a ./lh.BA.thresh.annot -c ./BA.thresh.ctab T40_OM_Post lh white \n computing statistics for each annotation in ./lh.BA.thresh.annot. reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white... reading input pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.pial... reading input white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white... INFO: assuming MGZ format for volumes. reading colortable from annotation file... colortable with 14 entries read (originally /Applications/freesurfer/average/colortable_BA.txt) Saving annotation colortable ./BA.thresh.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 623 286 756 1.985 0.434 0.181 0.114 27 3.1 BA1 1659 901 2066 2.137 0.510 0.131 0.077 42 5.9 BA2 767 562 662 1.588 0.317 0.192 0.086 13 2.7 BA3a 1347 900 1417 1.505 0.337 0.124 0.046 13 2.8 BA3b 1568 943 2275 2.152 0.781 0.154 0.086 35 5.0 BA4a 928 698 1228 1.853 0.728 0.154 0.066 13 3.1 BA4p 5754 3120 9345 2.573 0.717 0.158 0.182 227 34.8 BA6 1723 1036 2557 2.235 0.543 0.150 0.094 135 8.2 BA44 1285 786 2341 2.331 0.520 0.151 0.090 46 4.8 BA45 2773 1930 3376 1.673 0.516 0.176 0.084 61 9.3 V1 2983 1882 3715 1.861 0.504 0.165 0.075 65 8.2 V2 457 295 657 2.167 0.457 0.153 0.059 6 1.1 MT #-------------------------------------------- #@# BA Labels rh Fri Jan 22 14:00:59 EET 2016 \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA1.label --trgsubject T40_OM_Post --trglabel ./rh.BA1.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA1.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA1.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 3962 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3962 nlabel points Performing mapping from target back to the source label 132060 Number of reverse mapping hits = 342 Checking for and removing duplicates Writing label file ./rh.BA1.label 4304 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA2.label --trgsubject T40_OM_Post --trglabel ./rh.BA2.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA2.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA2.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 6687 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6687 nlabel points Performing mapping from target back to the source label 132060 Number of reverse mapping hits = 415 Checking for and removing duplicates Writing label file ./rh.BA2.label 7102 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA3a.label --trgsubject T40_OM_Post --trglabel ./rh.BA3a.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA3a.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA3a.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 3980 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3980 nlabel points Performing mapping from target back to the source label 132060 Number of reverse mapping hits = 170 Checking for and removing duplicates Writing label file ./rh.BA3a.label 4150 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA3b.label --trgsubject T40_OM_Post --trglabel ./rh.BA3b.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA3b.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA3b.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 4522 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4522 nlabel points Performing mapping from target back to the source label 132060 Number of reverse mapping hits = 323 Checking for and removing duplicates Writing label file ./rh.BA3b.label 4845 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA4a.label --trgsubject T40_OM_Post --trglabel ./rh.BA4a.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA4a.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA4a.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 5747 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5747 nlabel points Performing mapping from target back to the source label 132060 Number of reverse mapping hits = 542 Checking for and removing duplicates Writing label file ./rh.BA4a.label 6289 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA4p.label --trgsubject T40_OM_Post --trglabel ./rh.BA4p.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA4p.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA4p.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 4473 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4473 nlabel points Performing mapping from target back to the source label 132060 Number of reverse mapping hits = 223 Checking for and removing duplicates Writing label file ./rh.BA4p.label 4696 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA6.label --trgsubject T40_OM_Post --trglabel ./rh.BA6.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA6.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA6.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 12256 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 12256 nlabel points Performing mapping from target back to the source label 132060 Number of reverse mapping hits = 1478 Checking for and removing duplicates Writing label file ./rh.BA6.label 13734 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA44.label --trgsubject T40_OM_Post --trglabel ./rh.BA44.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA44.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA44.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 6912 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6912 nlabel points Performing mapping from target back to the source label 132060 Number of reverse mapping hits = 1001 Checking for and removing duplicates Writing label file ./rh.BA44.label 7913 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA45.label --trgsubject T40_OM_Post --trglabel ./rh.BA45.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA45.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA45.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 5355 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5355 nlabel points Performing mapping from target back to the source label 132060 Number of reverse mapping hits = 1025 Checking for and removing duplicates Writing label file ./rh.BA45.label 6380 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.V1.label --trgsubject T40_OM_Post --trglabel ./rh.V1.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.V1.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.V1.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 4727 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4727 nlabel points Performing mapping from target back to the source label 132060 Number of reverse mapping hits = 1793 Checking for and removing duplicates Writing label file ./rh.V1.label 6520 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.V2.label --trgsubject T40_OM_Post --trglabel ./rh.V2.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.V2.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.V2.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 8016 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 8016 nlabel points Performing mapping from target back to the source label 132060 Number of reverse mapping hits = 3306 Checking for and removing duplicates Writing label file ./rh.V2.label 11322 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.MT.label --trgsubject T40_OM_Post --trglabel ./rh.MT.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.MT.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.MT.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 1932 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1932 nlabel points Performing mapping from target back to the source label 132060 Number of reverse mapping hits = 369 Checking for and removing duplicates Writing label file ./rh.MT.label 2301 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.perirhinal.label --trgsubject T40_OM_Post --trglabel ./rh.perirhinal.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.perirhinal.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.perirhinal.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 752 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 752 nlabel points Performing mapping from target back to the source label 132060 Number of reverse mapping hits = 88 Checking for and removing duplicates Writing label file ./rh.perirhinal.label 840 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA1.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.BA1.thresh.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA1.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA1.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 876 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 876 nlabel points Performing mapping from target back to the source label 132060 Number of reverse mapping hits = 101 Checking for and removing duplicates Writing label file ./rh.BA1.thresh.label 977 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA2.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.BA2.thresh.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA2.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA2.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 2688 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2688 nlabel points Performing mapping from target back to the source label 132060 Number of reverse mapping hits = 109 Checking for and removing duplicates Writing label file ./rh.BA2.thresh.label 2797 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA3a.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.BA3a.thresh.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA3a.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA3a.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 1698 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1698 nlabel points Performing mapping from target back to the source label 132060 Number of reverse mapping hits = 65 Checking for and removing duplicates Writing label file ./rh.BA3a.thresh.label 1763 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA3b.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.BA3b.thresh.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA3b.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA3b.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 2183 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2183 nlabel points Performing mapping from target back to the source label 132060 Number of reverse mapping hits = 133 Checking for and removing duplicates Writing label file ./rh.BA3b.thresh.label 2316 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA4a.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.BA4a.thresh.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA4a.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA4a.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 1388 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1388 nlabel points Performing mapping from target back to the source label 132060 Number of reverse mapping hits = 180 Checking for and removing duplicates Writing label file ./rh.BA4a.thresh.label 1568 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA4p.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.BA4p.thresh.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA4p.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA4p.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 1489 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1489 nlabel points Performing mapping from target back to the source label 132060 Number of reverse mapping hits = 56 Checking for and removing duplicates Writing label file ./rh.BA4p.thresh.label 1545 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA6.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.BA6.thresh.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA6.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA6.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 6959 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6959 nlabel points Performing mapping from target back to the source label 132060 Number of reverse mapping hits = 720 Checking for and removing duplicates Writing label file ./rh.BA6.thresh.label 7679 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA44.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.BA44.thresh.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA44.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA44.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 1012 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1012 nlabel points Performing mapping from target back to the source label 132060 Number of reverse mapping hits = 130 Checking for and removing duplicates Writing label file ./rh.BA44.thresh.label 1142 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA45.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.BA45.thresh.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.BA45.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.BA45.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 1178 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1178 nlabel points Performing mapping from target back to the source label 132060 Number of reverse mapping hits = 221 Checking for and removing duplicates Writing label file ./rh.BA45.thresh.label 1399 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.V1.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.V1.thresh.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.V1.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.V1.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 3232 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3232 nlabel points Performing mapping from target back to the source label 132060 Number of reverse mapping hits = 1205 Checking for and removing duplicates Writing label file ./rh.V1.thresh.label 4437 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.V2.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.V2.thresh.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.V2.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.V2.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 3437 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3437 nlabel points Performing mapping from target back to the source label 132060 Number of reverse mapping hits = 1522 Checking for and removing duplicates Writing label file ./rh.V2.thresh.label 4959 mri_label2label: Done \n mri_label2label --srcsubject fsaverage --srclabel /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.MT.thresh.label --trgsubject T40_OM_Post --trglabel ./rh.MT.thresh.label --hemi rh --regmethod surface \n srclabel = /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/label/rh.MT.thresh.label srcsubject = fsaverage trgsubject = T40_OM_Post trglabel = ./rh.MT.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Loading source label. Found 268 points in source label. Starting surface-based mapping Reading source registration /Users/marco/Documents/T1s/pipelineT1/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white Reading target registration /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 268 nlabel points Performing mapping from target back to the source label 132060 Number of reverse mapping hits = 26 Checking for and removing duplicates Writing label file ./rh.MT.thresh.label 294 mri_label2label: Done \n mris_label2annot --s T40_OM_Post --hemi rh --ctab /Applications/freesurfer/average/colortable_BA.txt --l rh.BA1.label --l rh.BA2.label --l rh.BA3a.label --l rh.BA3b.label --l rh.BA4a.label --l rh.BA4p.label --l rh.BA6.label --l rh.BA44.label --l rh.BA45.label --l rh.V1.label --l rh.V2.label --l rh.MT.label --l rh.perirhinal.label --a BA --maxstatwinner --noverbose \n Reading ctab /Applications/freesurfer/average/colortable_BA.txt Number of ctab entries 14 $Id: mris_label2annot.c,v 1.17 2011/03/02 00:04:32 nicks Exp $ cwd /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label cmdline mris_label2annot --s T40_OM_Post --hemi rh --ctab /Applications/freesurfer/average/colortable_BA.txt --l rh.BA1.label --l rh.BA2.label --l rh.BA3a.label --l rh.BA3b.label --l rh.BA4a.label --l rh.BA4p.label --l rh.BA6.label --l rh.BA44.label --l rh.BA45.label --l rh.V1.label --l rh.V2.label --l rh.MT.label --l rh.perirhinal.label --a BA --maxstatwinner --noverbose sysname Darwin hostname MacBook-Pro-di-Marco.local machine x86_64 user marco subject T40_OM_Post hemi rh SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects ColorTable /Applications/freesurfer/average/colortable_BA.txt AnnotName BA nlables 13 LabelThresh 0 0.000000 Loading /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.orig 1 1530880 BA1 2 16749699 BA2 3 16711680 BA3a 4 3368703 BA3b 5 1376196 BA4a 6 13382655 BA4p 7 10036737 BA6 8 2490521 BA44 9 39283 BA45 10 3993 V1 11 8508928 V2 12 10027163 MT 13 16422433 perirhinal Mapping unhit to unknown Found 90249 unhit vertices Writing annot to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/rh.BA.annot \n mris_label2annot --s T40_OM_Post --hemi rh --ctab /Applications/freesurfer/average/colortable_BA.txt --l rh.BA1.thresh.label --l rh.BA2.thresh.label --l rh.BA3a.thresh.label --l rh.BA3b.thresh.label --l rh.BA4a.thresh.label --l rh.BA4p.thresh.label --l rh.BA6.thresh.label --l rh.BA44.thresh.label --l rh.BA45.thresh.label --l rh.V1.thresh.label --l rh.V2.thresh.label --l rh.MT.thresh.label --a BA.thresh --maxstatwinner --noverbose \n Reading ctab /Applications/freesurfer/average/colortable_BA.txt Number of ctab entries 14 $Id: mris_label2annot.c,v 1.17 2011/03/02 00:04:32 nicks Exp $ cwd /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label cmdline mris_label2annot --s T40_OM_Post --hemi rh --ctab /Applications/freesurfer/average/colortable_BA.txt --l rh.BA1.thresh.label --l rh.BA2.thresh.label --l rh.BA3a.thresh.label --l rh.BA3b.thresh.label --l rh.BA4a.thresh.label --l rh.BA4p.thresh.label --l rh.BA6.thresh.label --l rh.BA44.thresh.label --l rh.BA45.thresh.label --l rh.V1.thresh.label --l rh.V2.thresh.label --l rh.MT.thresh.label --a BA.thresh --maxstatwinner --noverbose sysname Darwin hostname MacBook-Pro-di-Marco.local machine x86_64 user marco subject T40_OM_Post hemi rh SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects ColorTable /Applications/freesurfer/average/colortable_BA.txt AnnotName BA.thresh nlables 12 LabelThresh 0 0.000000 Loading /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.orig 1 1530880 BA1 2 16749699 BA2 3 16711680 BA3a 4 3368703 BA3b 5 1376196 BA4a 6 13382655 BA4p 7 10036737 BA6 8 2490521 BA44 9 39283 BA45 10 3993 V1 11 8508928 V2 12 10027163 MT Mapping unhit to unknown Found 110134 unhit vertices Writing annot to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label/rh.BA.thresh.annot \n mris_anatomical_stats -mgz -f ../stats/rh.BA.stats -b -a ./rh.BA.annot -c ./BA.ctab T40_OM_Post rh white \n computing statistics for each annotation in ./rh.BA.annot. reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white... reading input pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.pial... reading input white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white... INFO: assuming MGZ format for volumes. reading colortable from annotation file... colortable with 14 entries read (originally /Applications/freesurfer/average/colortable_BA.txt) Saving annotation colortable ./BA.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1127 544 1647 2.250 0.475 0.165 0.162 56 8.2 BA1 3221 2028 3818 1.876 0.480 0.133 0.081 268 9.7 BA2 1046 767 918 1.521 0.324 0.180 0.074 16 3.1 BA3a 1896 1213 1990 1.470 0.435 0.131 0.058 32 4.8 BA3b 1828 1068 2598 2.211 0.719 0.155 0.104 67 9.4 BA4a 1169 857 1522 1.842 0.605 0.167 0.070 16 3.8 BA4p 8438 4799 13037 2.446 0.622 0.166 1.004 11882 628.6 BA6 3970 2602 6150 2.290 0.483 0.144 0.076 71 14.4 BA44 4156 2566 6636 2.156 0.577 0.165 0.094 96 16.8 BA45 4131 2531 4751 1.716 0.576 0.165 0.084 109 13.9 V1 8708 5010 9852 1.863 0.495 0.163 0.086 185 30.9 V2 1492 1047 2482 2.181 0.504 0.146 0.053 18 3.0 MT 629 426 1614 2.961 0.713 0.175 0.127 18 4.1 perirhinal \n mris_anatomical_stats -mgz -f ../stats/rh.BA.thresh.stats -b -a ./rh.BA.thresh.annot -c ./BA.thresh.ctab T40_OM_Post rh white \n computing statistics for each annotation in ./rh.BA.thresh.annot. reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white... reading input pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.pial... reading input white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white... INFO: assuming MGZ format for volumes. reading colortable from annotation file... colortable with 14 entries read (originally /Applications/freesurfer/average/colortable_BA.txt) Saving annotation colortable ./BA.thresh.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 719 353 1043 2.209 0.477 0.177 0.143 35 5.9 BA1 1798 1092 2050 1.816 0.488 0.127 0.088 30 3.9 BA2 991 704 804 1.525 0.326 0.174 0.073 14 2.9 BA3a 1601 1060 1508 1.351 0.329 0.120 0.041 16 2.9 BA3b 1135 646 1587 2.203 0.828 0.168 0.124 57 7.0 BA4a 951 744 1253 1.783 0.613 0.186 0.077 14 3.5 BA4p 5294 3014 8206 2.434 0.650 0.165 1.269 6159 505.5 BA6 815 538 1433 2.334 0.525 0.164 0.076 16 2.6 BA44 1000 652 2059 2.423 0.577 0.165 0.078 24 3.0 BA45 2862 1954 3566 1.704 0.551 0.168 0.082 75 8.4 V1 4540 2617 5103 1.815 0.480 0.175 0.092 111 17.7 V2 220 145 393 2.292 0.503 0.139 0.044 3 0.3 MT /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/label #-------------------------------------------- #@# Ex-vivo Entorhinal Cortex Label lh Fri Jan 22 14:04:26 EET 2016 \n mris_spherical_average -erode 1 -orig white -t 0.4 -o T40_OM_Post label lh.entorhinal lh sphere.reg lh.EC_average lh.entorhinal_exvivo.label \n painting output onto subject T40_OM_Post. processing subject lh.EC_average... reading output surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.sphere.reg... eroding label 1 times before writing thresholding label stat at 0.400 before writing only 1 subject - copying statistics... writing label with 938 points to lh.entorhinal_exvivo.label... \n mris_anatomical_stats -mgz -f ../stats/lh.entorhinal_exvivo.stats -b -l ./lh.entorhinal_exvivo.label T40_OM_Post lh white \n limiting computations to label ./lh.entorhinal_exvivo.label. reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white... reading input pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.pial... reading input white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/lh.white... INFO: assuming MGZ format for volumes. table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 347 211 927 2.731 0.846 0.166 0.096 9 1.6 ./lh.entorhinal_exvivo.label #-------------------------------------------- #@# Ex-vivo Entorhinal Cortex Label rh Fri Jan 22 14:04:41 EET 2016 \n mris_spherical_average -erode 1 -orig white -t 0.4 -o T40_OM_Post label rh.entorhinal rh sphere.reg rh.EC_average rh.entorhinal_exvivo.label \n painting output onto subject T40_OM_Post. processing subject rh.EC_average... reading output surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.sphere.reg... eroding label 1 times before writing thresholding label stat at 0.400 before writing only 1 subject - copying statistics... writing label with 856 points to rh.entorhinal_exvivo.label... \n mris_anatomical_stats -mgz -f ../stats/rh.entorhinal_exvivo.stats -b -l ./rh.entorhinal_exvivo.label T40_OM_Post rh white \n limiting computations to label ./rh.entorhinal_exvivo.label. reading volume /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/mri/wm.mgz... reading input surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white... reading input pial surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.pial... reading input white surface /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/rh.white... INFO: assuming MGZ format for volumes. table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 294 174 846 3.075 0.498 0.154 0.221 19 3.7 ./rh.entorhinal_exvivo.label #------------------------------------------ Started at Fri Jan 22 11:41:15 EET 2016 Ended at Fri Jan 22 14:04:55 EET 2016 #@#%# recon-all-run-time-hours 2.394 recon-all -s T40_OM_Post finished without error at Fri Jan 22 14:04:56 EET 2016 \n\n New invocation of recon-all \n\n Fri Jan 22 14:04:57 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post /Applications/freesurfer/bin/recon-all -s T40_OM_Post -localGI subjid T40_OM_Post setenv SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Actual FREESURFER_HOME /Applications/freesurfer build-stamp.txt: freesurfer-Darwin-lion-stable-pub-v5.3.0 Darwin MacBook-Pro-di-Marco.local 13.3.0 Darwin Kernel Version 13.3.0: Tue Jun 3 21:27:35 PDT 2014; root:xnu-2422.110.17~1/RELEASE_X86_64 x86_64 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 709 PhysMem: 5093M used (1341M wired), 401M unused. ######################################## program versions used $Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 nicks Exp $ $Id: mri_motion_correct.fsl,v 1.14 2011/03/02 20:16:39 nicks Exp $ mri_convert -all-info ProgramName: mri_convert ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:04:58-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 FLIRT version 5.5 $Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks Exp $ mri_convert --version stable5 ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:04:59-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 Program nu_correct, built from: Package MNI N3, version 1.10, compiled by nicks@aspasia.local (i686-apple-darwin10.2.0) on 2010-02-26 at 14:19:30 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:01-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:01-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_normalize.c,v 1.73.2.1 2012/10/17 19:11:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:02-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_watershed.cpp,v 1.96.2.1 2011/11/08 22:18:44 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:02-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:02-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_segment.c,v 1.40 2011/03/02 00:04:24 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_label2label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:02-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_label2label.c,v 1.40.2.2 2013/04/02 16:26:15 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:02-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_em_register.c,v 1.84.2.3 2013/02/09 00:49:26 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:03-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_normalize.c,v 1.52.2.2 2012/10/17 19:11:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:03-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_register.c,v 1.78.2.3 2013/02/09 00:42:20 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:03-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_label.c,v 1.96.2.1 2012/08/28 22:11:20 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:03-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_pretess.c,v 1.20 2011/03/02 00:04:23 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:03-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_fill.c,v 1.118 2011/03/16 21:23:49 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:04-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_concatenate_lta ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:04-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_concatenate_lta.c,v 1.10 2011/03/16 21:23:48 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:04-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:04-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_smooth.c,v 1.28 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:04-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_inflate.c,v 1.43 2011/03/02 00:04:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:05-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:05-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:05-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:05-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:05-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:06-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_euler_number.c,v 1.8.2.2 2013/01/14 22:40:07 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:06-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:06-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:06-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_volmask.cpp,v 1.25 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:06-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_anatomical_stats.c,v 1.72 2011/03/02 00:04:26 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:06-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mrisp_paint.c,v 1.11 2011/03/02 00:04:35 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:07-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_curvature_stats.c,v 1.64 2011/03/02 00:04:30 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:07-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_calc.c,v 1.37.2.8 2013/01/28 17:05:17 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ ProgramName: mri_robust_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:07-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:07-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:08-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:08-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_or.c,v 1.3 2011/03/02 00:04:13 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:08-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/01/22-12:05:08-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ####################################### GCADIR /Applications/freesurfer/average GCA RB_all_2008-03-26.gca GCASkull RB_all_withskull_2008-03-26.gca AvgCurvTif average.curvature.filled.buckner40.tif GCSDIR /Applications/freesurfer/average GCS curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ####################################### INFO: current FREESURFER_HOME does not match that of previous processing. Current: /Applications/freesurfer Previous: /cdrom/Marco/freesurfer /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf #-------------------------------------------- #@# Local Gyrification Index lh Fri Jan 22 14:05:09 EET 2016 \n mris_compute_lgi --i lh.pial \n ================= rm -Rf /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial ================= ================= mkdir -p /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial ================= ================= mris_fill -c -r 1 lh.pial /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz ================= reading surface from lh.pial... writing filled volume to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz... conforming output volume setting resolution for intermediate calculations to 1.0000 ================= make_outer_surface('/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz',15,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer'); exit ================= 2016-01-22 14:05:25.208 MATLAB_maci64[32271:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> reading filled volume... closing volume... morphological closing done. writing outer surface... ================= mris_extract_main_component /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-main ================= counting number of connected components... 63026 voxel in cpt #1: X=2 [v=63026,e=189072,f=126048] located at (-23.041338, -12.141769, 24.493813) For the whole surface: X=2 [v=63026,e=189072,f=126048] One single component has been found nothing to do done ================= mris_smooth -nw -n 30 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-main ./lh.pial-outer-smoothed ================= smoothing for 30 iterations smoothing surface tessellation for 30 iterations... smoothing complete - recomputing first and second fundamental forms... ================= mris_euler_number ./lh.pial-outer-smoothed ================= euler # = v-e+f = 2g-2: 63026 - 189072 + 126048 = 2 --> 0 holes F =2V-4: 126048 = 126052-4 (0) 2E=3F: 378144 = 378144 (0) total defect index = 0 ================= mris_convert -n lh.pial-outer-smoothed /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc ================= ================= find_corresponding_center_FSformat('lh.pial','lh.pial-outer-smoothed',100,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial','/tmp/mrc_32255_.m'); exit ================= 2016-01-22 14:07:08.275 MATLAB_maci64[32338:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.14 sec) FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) deltaT = 4.5400 ================= make_roi_paths('lh.pial','lh.pial-outer-smoothed',25,100,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial','/tmp/mrp_32255_.m'); exit ================= 2016-01-22 14:07:29.374 MATLAB_maci64[32394:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> loading datas ... FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.03 sec) FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) preparing outer mesh structure ... face 5000 / 126048 face 10000 / 126048 face 15000 / 126048 face 20000 / 126048 face 25000 / 126048 face 30000 / 126048 face 35000 / 126048 face 40000 / 126048 face 45000 / 126048 face 50000 / 126048 face 55000 / 126048 face 60000 / 126048 face 65000 / 126048 face 70000 / 126048 face 75000 / 126048 face 80000 / 126048 face 85000 / 126048 face 90000 / 126048 face 95000 / 126048 face 100000 / 126048 face 105000 / 126048 face 110000 / 126048 face 115000 / 126048 face 120000 / 126048 face 125000 / 126048 mesh_outer = vertices: [63026x3 double] faces: [126048x3 double] facesOfVertex: [63026x1 struct] preparing pial mesh structure ... ...searching for mesh edges...done (202.53 sec). ... creating path file for vertex 1 / 63026 area file for outer ROIs saved at 1 ... creating path file for vertex 101 / 63026 ... creating path file for vertex 201 / 63026 ... creating path file for vertex 301 / 63026 ... creating path file for vertex 401 / 63026 ... creating path file for vertex 501 / 63026 ... creating path file for vertex 601 / 63026 ... creating path file for vertex 701 / 63026 ... creating path file for vertex 801 / 63026 ... creating path file for vertex 901 / 63026 ... creating path file for vertex 1001 / 63026 ... creating path file for vertex 1101 / 63026 ... creating path file for vertex 1201 / 63026 ... creating path file for vertex 1301 / 63026 ... creating path file for vertex 1401 / 63026 ... creating path file for vertex 1501 / 63026 ... creating path file for vertex 1601 / 63026 ... creating path file for vertex 1701 / 63026 ... creating path file for vertex 1801 / 63026 ... creating path file for vertex 1901 / 63026 ... creating path file for vertex 2001 / 63026 ... creating path file for vertex 2101 / 63026 ... creating path file for vertex 2201 / 63026 ... creating path file for vertex 2301 / 63026 ... creating path file for vertex 2401 / 63026 ... creating path file for vertex 2501 / 63026 ... creating path file for vertex 2601 / 63026 ... creating path file for vertex 2701 / 63026 ... creating path file for vertex 2801 / 63026 ... creating path file for vertex 2901 / 63026 ... creating path file for vertex 3001 / 63026 ... creating path file for vertex 3101 / 63026 ... creating path file for vertex 3201 / 63026 ... creating path file for vertex 3301 / 63026 ... creating path file for vertex 3401 / 63026 ... creating path file for vertex 3501 / 63026 ... creating path file for vertex 3601 / 63026 ... creating path file for vertex 3701 / 63026 ... creating path file for vertex 3801 / 63026 ... creating path file for vertex 3901 / 63026 ... creating path file for vertex 4001 / 63026 ... creating path file for vertex 4101 / 63026 ... creating path file for vertex 4201 / 63026 ... creating path file for vertex 4301 / 63026 ... creating path file for vertex 4401 / 63026 ... creating path file for vertex 4501 / 63026 ... creating path file for vertex 4601 / 63026 ... creating path file for vertex 4701 / 63026 ... creating path file for vertex 4801 / 63026 ... creating path file for vertex 4901 / 63026 ... creating path file for vertex 5001 / 63026 area file for outer ROIs saved at 5001 ... creating path file for vertex 5101 / 63026 ... creating path file for vertex 5201 / 63026 ... creating path file for vertex 5301 / 63026 ... creating path file for vertex 5401 / 63026 ... creating path file for vertex 5501 / 63026 ... creating path file for vertex 5601 / 63026 ... creating path file for vertex 5701 / 63026 ... creating path file for vertex 5801 / 63026 ... creating path file for vertex 5901 / 63026 ... creating path file for vertex 6001 / 63026 ... creating path file for vertex 6101 / 63026 ... creating path file for vertex 6201 / 63026 ... creating path file for vertex 6301 / 63026 ... creating path file for vertex 6401 / 63026 ... creating path file for vertex 6501 / 63026 ... creating path file for vertex 6601 / 63026 ... creating path file for vertex 6701 / 63026 ... creating path file for vertex 6801 / 63026 ... creating path file for vertex 6901 / 63026 ... creating path file for vertex 7001 / 63026 ... creating path file for vertex 7101 / 63026 ... creating path file for vertex 7201 / 63026 ... creating path file for vertex 7301 / 63026 ... creating path file for vertex 7401 / 63026 ... creating path file for vertex 7501 / 63026 ... creating path file for vertex 7601 / 63026 ... creating path file for vertex 7701 / 63026 ... creating path file for vertex 7801 / 63026 ... creating path file for vertex 7901 / 63026 ... creating path file for vertex 8001 / 63026 ... creating path file for vertex 8101 / 63026 ... creating path file for vertex 8201 / 63026 ... creating path file for vertex 8301 / 63026 ... creating path file for vertex 8401 / 63026 ... creating path file for vertex 8501 / 63026 ... creating path file for vertex 8601 / 63026 ... creating path file for vertex 8701 / 63026 ... creating path file for vertex 8801 / 63026 ... creating path file for vertex 8901 / 63026 ... creating path file for vertex 9001 / 63026 ... creating path file for vertex 9101 / 63026 ... creating path file for vertex 9201 / 63026 ... creating path file for vertex 9301 / 63026 ... creating path file for vertex 9401 / 63026 ... creating path file for vertex 9501 / 63026 ... creating path file for vertex 9601 / 63026 ... creating path file for vertex 9701 / 63026 ... creating path file for vertex 9801 / 63026 ... creating path file for vertex 9901 / 63026 ... creating path file for vertex 10001 / 63026 area file for outer ROIs saved at 10001 ... creating path file for vertex 10101 / 63026 ... creating path file for vertex 10201 / 63026 ... creating path file for vertex 10301 / 63026 ... creating path file for vertex 10401 / 63026 ... creating path file for vertex 10501 / 63026 ... creating path file for vertex 10601 / 63026 ... creating path file for vertex 10701 / 63026 ... creating path file for vertex 10801 / 63026 ... creating path file for vertex 10901 / 63026 ... creating path file for vertex 11001 / 63026 ... creating path file for vertex 11101 / 63026 ... creating path file for vertex 11201 / 63026 ... creating path file for vertex 11301 / 63026 ... creating path file for vertex 11401 / 63026 ... creating path file for vertex 11501 / 63026 ... creating path file for vertex 11601 / 63026 ... creating path file for vertex 11701 / 63026 ... creating path file for vertex 11801 / 63026 ... creating path file for vertex 11901 / 63026 ... creating path file for vertex 12001 / 63026 ... creating path file for vertex 12101 / 63026 ... creating path file for vertex 12201 / 63026 ... creating path file for vertex 12301 / 63026 ... creating path file for vertex 12401 / 63026 ... creating path file for vertex 12501 / 63026 ... creating path file for vertex 12601 / 63026 ... creating path file for vertex 12701 / 63026 ... creating path file for vertex 12801 / 63026 ... creating path file for vertex 12901 / 63026 ... creating path file for vertex 13001 / 63026 ... creating path file for vertex 13101 / 63026 ... creating path file for vertex 13201 / 63026 ... creating path file for vertex 13301 / 63026 ... creating path file for vertex 13401 / 63026 ... creating path file for vertex 13501 / 63026 ... creating path file for vertex 13601 / 63026 ... creating path file for vertex 13701 / 63026 ... creating path file for vertex 13801 / 63026 ... creating path file for vertex 13901 / 63026 ... creating path file for vertex 14001 / 63026 ... creating path file for vertex 14101 / 63026 ... creating path file for vertex 14201 / 63026 ... creating path file for vertex 14301 / 63026 ... creating path file for vertex 14401 / 63026 ... creating path file for vertex 14501 / 63026 ... creating path file for vertex 14601 / 63026 ... creating path file for vertex 14701 / 63026 ... creating path file for vertex 14801 / 63026 ... creating path file for vertex 14901 / 63026 ... creating path file for vertex 15001 / 63026 area file for outer ROIs saved at 15001 ... creating path file for vertex 15101 / 63026 ... creating path file for vertex 15201 / 63026 ... creating path file for vertex 15301 / 63026 ... creating path file for vertex 15401 / 63026 ... creating path file for vertex 15501 / 63026 ... creating path file for vertex 15601 / 63026 ... creating path file for vertex 15701 / 63026 ... creating path file for vertex 15801 / 63026 ... creating path file for vertex 15901 / 63026 ... creating path file for vertex 16001 / 63026 ... creating path file for vertex 16101 / 63026 ... creating path file for vertex 16201 / 63026 ... creating path file for vertex 16301 / 63026 ... creating path file for vertex 16401 / 63026 ... creating path file for vertex 16501 / 63026 ... creating path file for vertex 16601 / 63026 ... creating path file for vertex 16701 / 63026 ... creating path file for vertex 16801 / 63026 ... creating path file for vertex 16901 / 63026 ... creating path file for vertex 17001 / 63026 ... creating path file for vertex 17101 / 63026 ... creating path file for vertex 17201 / 63026 ... creating path file for vertex 17301 / 63026 ... creating path file for vertex 17401 / 63026 ... creating path file for vertex 17501 / 63026 ... creating path file for vertex 17601 / 63026 ... creating path file for vertex 17701 / 63026 ... creating path file for vertex 17801 / 63026 ... creating path file for vertex 17901 / 63026 ... creating path file for vertex 18001 / 63026 ... creating path file for vertex 18101 / 63026 ... creating path file for vertex 18201 / 63026 ... creating path file for vertex 18301 / 63026 ... creating path file for vertex 18401 / 63026 ... creating path file for vertex 18501 / 63026 ... creating path file for vertex 18601 / 63026 ... creating path file for vertex 18701 / 63026 ... creating path file for vertex 18801 / 63026 ... creating path file for vertex 18901 / 63026 ... creating path file for vertex 19001 / 63026 ... creating path file for vertex 19101 / 63026 ... creating path file for vertex 19201 / 63026 ... creating path file for vertex 19301 / 63026 ... creating path file for vertex 19401 / 63026 ... creating path file for vertex 19501 / 63026 ... creating path file for vertex 19601 / 63026 ... creating path file for vertex 19701 / 63026 non geodesic regions removed from the patch ... creating path file for vertex 19801 / 63026 ... creating path file for vertex 19901 / 63026 ... creating path file for vertex 20001 / 63026 area file for outer ROIs saved at 20001 ... creating path file for vertex 20101 / 63026 ... creating path file for vertex 20201 / 63026 ... creating path file for vertex 20301 / 63026 ... creating path file for vertex 20401 / 63026 ... creating path file for vertex 20501 / 63026 ... creating path file for vertex 20601 / 63026 ... creating path file for vertex 20701 / 63026 ... creating path file for vertex 20801 / 63026 ... creating path file for vertex 20901 / 63026 ... creating path file for vertex 21001 / 63026 ... creating path file for vertex 21101 / 63026 ... creating path file for vertex 21201 / 63026 ... creating path file for vertex 21301 / 63026 ... creating path file for vertex 21401 / 63026 ... creating path file for vertex 21501 / 63026 ... creating path file for vertex 21601 / 63026 ... creating path file for vertex 21701 / 63026 ... creating path file for vertex 21801 / 63026 ... creating path file for vertex 21901 / 63026 ... creating path file for vertex 22001 / 63026 ... creating path file for vertex 22101 / 63026 ... creating path file for vertex 22201 / 63026 ... creating path file for vertex 22301 / 63026 ... creating path file for vertex 22401 / 63026 ... creating path file for vertex 22501 / 63026 ... creating path file for vertex 22601 / 63026 ... creating path file for vertex 22701 / 63026 ... creating path file for vertex 22801 / 63026 ... creating path file for vertex 22901 / 63026 ... creating path file for vertex 23001 / 63026 ... creating path file for vertex 23101 / 63026 ... creating path file for vertex 23201 / 63026 ... creating path file for vertex 23301 / 63026 ... creating path file for vertex 23401 / 63026 ... creating path file for vertex 23501 / 63026 ... creating path file for vertex 23601 / 63026 ... creating path file for vertex 23701 / 63026 ... creating path file for vertex 23801 / 63026 ... creating path file for vertex 23901 / 63026 ... creating path file for vertex 24001 / 63026 ... creating path file for vertex 24101 / 63026 ... creating path file for vertex 24201 / 63026 ... creating path file for vertex 24301 / 63026 ... creating path file for vertex 24401 / 63026 ... creating path file for vertex 24501 / 63026 ... creating path file for vertex 24601 / 63026 ... creating path file for vertex 24701 / 63026 ... creating path file for vertex 24801 / 63026 ... creating path file for vertex 24901 / 63026 ... creating path file for vertex 25001 / 63026 area file for outer ROIs saved at 25001 ... creating path file for vertex 25101 / 63026 ... creating path file for vertex 25201 / 63026 ... creating path file for vertex 25301 / 63026 ... creating path file for vertex 25401 / 63026 ... creating path file for vertex 25501 / 63026 ... creating path file for vertex 25601 / 63026 ... creating path file for vertex 25701 / 63026 ... creating path file for vertex 25801 / 63026 ... creating path file for vertex 25901 / 63026 ... creating path file for vertex 26001 / 63026 ... creating path file for vertex 26101 / 63026 ... creating path file for vertex 26201 / 63026 ... creating path file for vertex 26301 / 63026 ... creating path file for vertex 26401 / 63026 ... creating path file for vertex 26501 / 63026 ... creating path file for vertex 26601 / 63026 ... creating path file for vertex 26701 / 63026 ... creating path file for vertex 26801 / 63026 ... creating path file for vertex 26901 / 63026 ... creating path file for vertex 27001 / 63026 ... creating path file for vertex 27101 / 63026 ... creating path file for vertex 27201 / 63026 ... creating path file for vertex 27301 / 63026 ... creating path file for vertex 27401 / 63026 ... creating path file for vertex 27501 / 63026 ... creating path file for vertex 27601 / 63026 ... creating path file for vertex 27701 / 63026 ... creating path file for vertex 27801 / 63026 ... creating path file for vertex 27901 / 63026 ... creating path file for vertex 28001 / 63026 ... creating path file for vertex 28101 / 63026 ... creating path file for vertex 28201 / 63026 ... creating path file for vertex 28301 / 63026 ... creating path file for vertex 28401 / 63026 ... creating path file for vertex 28501 / 63026 ... creating path file for vertex 28601 / 63026 ... creating path file for vertex 28701 / 63026 ... creating path file for vertex 28801 / 63026 ... creating path file for vertex 28901 / 63026 ... creating path file for vertex 29001 / 63026 ... creating path file for vertex 29101 / 63026 ... creating path file for vertex 29201 / 63026 ... creating path file for vertex 29301 / 63026 ... creating path file for vertex 29401 / 63026 ... creating path file for vertex 29501 / 63026 ... creating path file for vertex 29601 / 63026 ... creating path file for vertex 29701 / 63026 ... creating path file for vertex 29801 / 63026 ... creating path file for vertex 29901 / 63026 ... creating path file for vertex 30001 / 63026 area file for outer ROIs saved at 30001 ... creating path file for vertex 30101 / 63026 ... creating path file for vertex 30201 / 63026 ... creating path file for vertex 30301 / 63026 ... creating path file for vertex 30401 / 63026 ... creating path file for vertex 30501 / 63026 ... creating path file for vertex 30601 / 63026 ... creating path file for vertex 30701 / 63026 ... creating path file for vertex 30801 / 63026 ... creating path file for vertex 30901 / 63026 ... creating path file for vertex 31001 / 63026 ... creating path file for vertex 31101 / 63026 ... creating path file for vertex 31201 / 63026 ... creating path file for vertex 31301 / 63026 ... creating path file for vertex 31401 / 63026 ... creating path file for vertex 31501 / 63026 ... creating path file for vertex 31601 / 63026 ... creating path file for vertex 31701 / 63026 ... creating path file for vertex 31801 / 63026 ... creating path file for vertex 31901 / 63026 ... creating path file for vertex 32001 / 63026 ... creating path file for vertex 32101 / 63026 ... creating path file for vertex 32201 / 63026 ... creating path file for vertex 32301 / 63026 ... creating path file for vertex 32401 / 63026 ... creating path file for vertex 32501 / 63026 ... creating path file for vertex 32601 / 63026 ... creating path file for vertex 32701 / 63026 ... creating path file for vertex 32801 / 63026 ... creating path file for vertex 32901 / 63026 ... creating path file for vertex 33001 / 63026 ... creating path file for vertex 33101 / 63026 ... creating path file for vertex 33201 / 63026 ... creating path file for vertex 33301 / 63026 ... creating path file for vertex 33401 / 63026 ... creating path file for vertex 33501 / 63026 ... creating path file for vertex 33601 / 63026 ... creating path file for vertex 33701 / 63026 ... creating path file for vertex 33801 / 63026 ... creating path file for vertex 33901 / 63026 ... creating path file for vertex 34001 / 63026 ... creating path file for vertex 34101 / 63026 ... creating path file for vertex 34201 / 63026 ... creating path file for vertex 34301 / 63026 ... creating path file for vertex 34401 / 63026 ... creating path file for vertex 34501 / 63026 ... creating path file for vertex 34601 / 63026 ... creating path file for vertex 34701 / 63026 ... creating path file for vertex 34801 / 63026 ... creating path file for vertex 34901 / 63026 ... creating path file for vertex 35001 / 63026 area file for outer ROIs saved at 35001 ... creating path file for vertex 35101 / 63026 ... creating path file for vertex 35201 / 63026 ... creating path file for vertex 35301 / 63026 ... creating path file for vertex 35401 / 63026 ... creating path file for vertex 35501 / 63026 ... creating path file for vertex 35601 / 63026 ... creating path file for vertex 35701 / 63026 ... creating path file for vertex 35801 / 63026 ... creating path file for vertex 35901 / 63026 ... creating path file for vertex 36001 / 63026 ... creating path file for vertex 36101 / 63026 ... creating path file for vertex 36201 / 63026 ... creating path file for vertex 36301 / 63026 ... creating path file for vertex 36401 / 63026 ... creating path file for vertex 36501 / 63026 ... creating path file for vertex 36601 / 63026 ... creating path file for vertex 36701 / 63026 ... creating path file for vertex 36801 / 63026 ... creating path file for vertex 36901 / 63026 ... creating path file for vertex 37001 / 63026 ... creating path file for vertex 37101 / 63026 ... creating path file for vertex 37201 / 63026 ... creating path file for vertex 37301 / 63026 ... creating path file for vertex 37401 / 63026 ... creating path file for vertex 37501 / 63026 ... creating path file for vertex 37601 / 63026 ... creating path file for vertex 37701 / 63026 ... creating path file for vertex 37801 / 63026 ... creating path file for vertex 37901 / 63026 ... creating path file for vertex 38001 / 63026 ... creating path file for vertex 38101 / 63026 ... creating path file for vertex 38201 / 63026 ... creating path file for vertex 38301 / 63026 ... creating path file for vertex 38401 / 63026 ... creating path file for vertex 38501 / 63026 ... creating path file for vertex 38601 / 63026 ... creating path file for vertex 38701 / 63026 ... creating path file for vertex 38801 / 63026 ... creating path file for vertex 38901 / 63026 ... creating path file for vertex 39001 / 63026 ... creating path file for vertex 39101 / 63026 ... creating path file for vertex 39201 / 63026 ... creating path file for vertex 39301 / 63026 ... creating path file for vertex 39401 / 63026 ... creating path file for vertex 39501 / 63026 ... creating path file for vertex 39601 / 63026 ... creating path file for vertex 39701 / 63026 ... creating path file for vertex 39801 / 63026 ... creating path file for vertex 39901 / 63026 ... creating path file for vertex 40001 / 63026 area file for outer ROIs saved at 40001 ... creating path file for vertex 40101 / 63026 ... creating path file for vertex 40201 / 63026 ... creating path file for vertex 40301 / 63026 ... creating path file for vertex 40401 / 63026 ... creating path file for vertex 40501 / 63026 ... creating path file for vertex 40601 / 63026 ... creating path file for vertex 40701 / 63026 ... creating path file for vertex 40801 / 63026 ... creating path file for vertex 40901 / 63026 ... creating path file for vertex 41001 / 63026 ... creating path file for vertex 41101 / 63026 ... creating path file for vertex 41201 / 63026 ... creating path file for vertex 41301 / 63026 ... creating path file for vertex 41401 / 63026 ... creating path file for vertex 41501 / 63026 ... creating path file for vertex 41601 / 63026 ... creating path file for vertex 41701 / 63026 ... creating path file for vertex 41801 / 63026 ... creating path file for vertex 41901 / 63026 ... creating path file for vertex 42001 / 63026 ... creating path file for vertex 42101 / 63026 ... creating path file for vertex 42201 / 63026 ... creating path file for vertex 42301 / 63026 ... creating path file for vertex 42401 / 63026 ... creating path file for vertex 42501 / 63026 ... creating path file for vertex 42601 / 63026 ... creating path file for vertex 42701 / 63026 ... creating path file for vertex 42801 / 63026 ... creating path file for vertex 42901 / 63026 ... creating path file for vertex 43001 / 63026 ... creating path file for vertex 43101 / 63026 ... creating path file for vertex 43201 / 63026 ... creating path file for vertex 43301 / 63026 ... creating path file for vertex 43401 / 63026 ... creating path file for vertex 43501 / 63026 ... creating path file for vertex 43601 / 63026 ... creating path file for vertex 43701 / 63026 ... creating path file for vertex 43801 / 63026 ... creating path file for vertex 43901 / 63026 ... creating path file for vertex 44001 / 63026 ... creating path file for vertex 44101 / 63026 ... creating path file for vertex 44201 / 63026 ... creating path file for vertex 44301 / 63026 ... creating path file for vertex 44401 / 63026 ... creating path file for vertex 44501 / 63026 ... creating path file for vertex 44601 / 63026 ... creating path file for vertex 44701 / 63026 ... creating path file for vertex 44801 / 63026 ... creating path file for vertex 44901 / 63026 ... creating path file for vertex 45001 / 63026 area file for outer ROIs saved at 45001 ... creating path file for vertex 45101 / 63026 ... creating path file for vertex 45201 / 63026 ... creating path file for vertex 45301 / 63026 ... creating path file for vertex 45401 / 63026 ... creating path file for vertex 45501 / 63026 ... creating path file for vertex 45601 / 63026 ... creating path file for vertex 45701 / 63026 ... creating path file for vertex 45801 / 63026 ... creating path file for vertex 45901 / 63026 ... creating path file for vertex 46001 / 63026 ... creating path file for vertex 46101 / 63026 ... creating path file for vertex 46201 / 63026 ... creating path file for vertex 46301 / 63026 ... creating path file for vertex 46401 / 63026 ... creating path file for vertex 46501 / 63026 ... creating path file for vertex 46601 / 63026 ... creating path file for vertex 46701 / 63026 ... creating path file for vertex 46801 / 63026 ... creating path file for vertex 46901 / 63026 ... creating path file for vertex 47001 / 63026 ... creating path file for vertex 47101 / 63026 ... creating path file for vertex 47201 / 63026 ... creating path file for vertex 47301 / 63026 ... creating path file for vertex 47401 / 63026 ... creating path file for vertex 47501 / 63026 ... creating path file for vertex 47601 / 63026 ... creating path file for vertex 47701 / 63026 ... creating path file for vertex 47801 / 63026 ... creating path file for vertex 47901 / 63026 ... creating path file for vertex 48001 / 63026 ... creating path file for vertex 48101 / 63026 ... creating path file for vertex 48201 / 63026 ... creating path file for vertex 48301 / 63026 ... creating path file for vertex 48401 / 63026 ... creating path file for vertex 48501 / 63026 ... creating path file for vertex 48601 / 63026 ... creating path file for vertex 48701 / 63026 ... creating path file for vertex 48801 / 63026 ... creating path file for vertex 48901 / 63026 ... creating path file for vertex 49001 / 63026 ... creating path file for vertex 49101 / 63026 ... creating path file for vertex 49201 / 63026 ... creating path file for vertex 49301 / 63026 ... creating path file for vertex 49401 / 63026 ... creating path file for vertex 49501 / 63026 ... creating path file for vertex 49601 / 63026 ... creating path file for vertex 49701 / 63026 ... creating path file for vertex 49801 / 63026 ... creating path file for vertex 49901 / 63026 ... creating path file for vertex 50001 / 63026 area file for outer ROIs saved at 50001 ... creating path file for vertex 50101 / 63026 ... creating path file for vertex 50201 / 63026 ... creating path file for vertex 50301 / 63026 ... creating path file for vertex 50401 / 63026 ... creating path file for vertex 50501 / 63026 ... creating path file for vertex 50601 / 63026 ... creating path file for vertex 50701 / 63026 ... creating path file for vertex 50801 / 63026 ... creating path file for vertex 50901 / 63026 ... creating path file for vertex 51001 / 63026 ... creating path file for vertex 51101 / 63026 ... creating path file for vertex 51201 / 63026 ... creating path file for vertex 51301 / 63026 ... creating path file for vertex 51401 / 63026 ... creating path file for vertex 51501 / 63026 ... creating path file for vertex 51601 / 63026 ... creating path file for vertex 51701 / 63026 ... creating path file for vertex 51801 / 63026 ... creating path file for vertex 51901 / 63026 ... creating path file for vertex 52001 / 63026 ... creating path file for vertex 52101 / 63026 ... creating path file for vertex 52201 / 63026 ... creating path file for vertex 52301 / 63026 ... creating path file for vertex 52401 / 63026 ... creating path file for vertex 52501 / 63026 ... creating path file for vertex 52601 / 63026 ... creating path file for vertex 52701 / 63026 ... creating path file for vertex 52801 / 63026 non geodesic regions removed from the patch ... creating path file for vertex 52901 / 63026 ... creating path file for vertex 53001 / 63026 ... creating path file for vertex 53101 / 63026 ... creating path file for vertex 53201 / 63026 ... creating path file for vertex 53301 / 63026 ... creating path file for vertex 53401 / 63026 ... creating path file for vertex 53501 / 63026 ... creating path file for vertex 53601 / 63026 ... creating path file for vertex 53701 / 63026 ... creating path file for vertex 53801 / 63026 ... creating path file for vertex 53901 / 63026 ... creating path file for vertex 54001 / 63026 ... creating path file for vertex 54101 / 63026 ... creating path file for vertex 54201 / 63026 ... creating path file for vertex 54301 / 63026 ... creating path file for vertex 54401 / 63026 ... creating path file for vertex 54501 / 63026 ... creating path file for vertex 54601 / 63026 ... creating path file for vertex 54701 / 63026 ... creating path file for vertex 54801 / 63026 ... creating path file for vertex 54901 / 63026 ... creating path file for vertex 55001 / 63026 non geodesic regions removed from the patch area file for outer ROIs saved at 55001 ... creating path file for vertex 55101 / 63026 ... creating path file for vertex 55201 / 63026 ... creating path file for vertex 55301 / 63026 ... creating path file for vertex 55401 / 63026 ... creating path file for vertex 55501 / 63026 ... creating path file for vertex 55601 / 63026 ... creating path file for vertex 55701 / 63026 ... creating path file for vertex 55801 / 63026 ... creating path file for vertex 55901 / 63026 ... creating path file for vertex 56001 / 63026 ... creating path file for vertex 56101 / 63026 ... creating path file for vertex 56201 / 63026 ... creating path file for vertex 56301 / 63026 ... creating path file for vertex 56401 / 63026 ... creating path file for vertex 56501 / 63026 ... creating path file for vertex 56601 / 63026 ... creating path file for vertex 56701 / 63026 ... creating path file for vertex 56801 / 63026 ... creating path file for vertex 56901 / 63026 ... creating path file for vertex 57001 / 63026 ... creating path file for vertex 57101 / 63026 ... creating path file for vertex 57201 / 63026 ... creating path file for vertex 57301 / 63026 ... creating path file for vertex 57401 / 63026 ... creating path file for vertex 57501 / 63026 ... creating path file for vertex 57601 / 63026 ... creating path file for vertex 57701 / 63026 ... creating path file for vertex 57801 / 63026 ... creating path file for vertex 57901 / 63026 ... creating path file for vertex 58001 / 63026 ... creating path file for vertex 58101 / 63026 ... creating path file for vertex 58201 / 63026 ... creating path file for vertex 58301 / 63026 ... creating path file for vertex 58401 / 63026 ... creating path file for vertex 58501 / 63026 ... creating path file for vertex 58601 / 63026 ... creating path file for vertex 58701 / 63026 ... creating path file for vertex 58801 / 63026 ... creating path file for vertex 58901 / 63026 ... creating path file for vertex 59001 / 63026 ... creating path file for vertex 59101 / 63026 ... creating path file for vertex 59201 / 63026 ... creating path file for vertex 59301 / 63026 ... creating path file for vertex 59401 / 63026 ... creating path file for vertex 59501 / 63026 ... creating path file for vertex 59601 / 63026 ... creating path file for vertex 59701 / 63026 ... creating path file for vertex 59801 / 63026 ... creating path file for vertex 59901 / 63026 ... creating path file for vertex 60001 / 63026 area file for outer ROIs saved at 60001 ... creating path file for vertex 60101 / 63026 ... creating path file for vertex 60201 / 63026 ... creating path file for vertex 60301 / 63026 ... creating path file for vertex 60401 / 63026 ... creating path file for vertex 60501 / 63026 ... creating path file for vertex 60601 / 63026 ... creating path file for vertex 60701 / 63026 ... creating path file for vertex 60801 / 63026 ... creating path file for vertex 60901 / 63026 ... creating path file for vertex 61001 / 63026 ... creating path file for vertex 61101 / 63026 ... creating path file for vertex 61201 / 63026 ... creating path file for vertex 61301 / 63026 ... creating path file for vertex 61401 / 63026 ... creating path file for vertex 61501 / 63026 ... creating path file for vertex 61601 / 63026 ... creating path file for vertex 61701 / 63026 ... creating path file for vertex 61801 / 63026 ... creating path file for vertex 61901 / 63026 ... creating path file for vertex 62001 / 63026 ... creating path file for vertex 62101 / 63026 ... creating path file for vertex 62201 / 63026 ... creating path file for vertex 62301 / 63026 ... creating path file for vertex 62401 / 63026 ... creating path file for vertex 62501 / 63026 ... creating path file for vertex 62601 / 63026 ... creating path file for vertex 62701 / 63026 ... creating path file for vertex 62801 / 63026 ... creating path file for vertex 62901 / 63026 ... creating path file for vertex 63001 / 63026 saving area file in matlab format... DONE. deltaT = 991.9600 ================= mri_path2label --confillxfn lh.pial /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/mri_path2label.input ================= Reading lh.pial Connecting and filling vertices in path at fillseed 824 Finding path................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 824 nlabel 10078 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000001.label Connecting and filling vertices in path at fillseed 851 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 851 nlabel 10667 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000101.label Connecting and filling vertices in path at fillseed 2344 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 2344 nlabel 14725 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000201.label Connecting and filling vertices in path at fillseed 2372 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 2372 nlabel 15546 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000301.label Connecting and filling vertices in path at fillseed 2724 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 2724 nlabel 8616 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000401.label Connecting and filling vertices in path at fillseed 2678 Finding path................................................................................................................................................................................................................................................................................................................... done Filling 2678 nlabel 9110 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000501.label Connecting and filling vertices in path at fillseed 2316 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 2316 nlabel 14790 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000601.label Connecting and filling vertices in path at fillseed 2823 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 2823 nlabel 10317 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000701.label Connecting and filling vertices in path at fillseed 3507 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 3507 nlabel 14160 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000801.label Connecting and filling vertices in path at fillseed 2691 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 2691 nlabel 8266 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000901.label Connecting and filling vertices in path at fillseed 3449 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 3449 nlabel 14821 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001001.label Connecting and filling vertices in path at fillseed 6167 Finding path................................................................................................................................................................................................................................................................................................................. done Filling 6167 nlabel 5860 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001101.label Connecting and filling vertices in path at fillseed 4589 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 4589 nlabel 8611 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001201.label Connecting and filling vertices in path at fillseed 4641 Finding path............................................................................................................................................................................................................................................................................................................................................................ done Filling 4641 nlabel 10092 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001301.label Connecting and filling vertices in path at fillseed 4007 Finding path......................................................................................................................................................................................................................................................................................................................... done Filling 4007 nlabel 8488 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001401.label Connecting and filling vertices in path at fillseed 4170 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 4170 nlabel 15022 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001501.label Connecting and filling vertices in path at fillseed 6164 Finding path............................................................................................................................................................................................................................................................................................................. done Filling 6164 nlabel 8516 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001601.label Connecting and filling vertices in path at fillseed 6328 Finding path.............................................................................................................................................................................................................................................................................................................. done Filling 6328 nlabel 9291 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001701.label Connecting and filling vertices in path at fillseed 6240 Finding path........................................................................................................................................................................................................................................................................................................................................................................ done Filling 6240 nlabel 7519 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001801.label Connecting and filling vertices in path at fillseed 5816 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 5816 nlabel 15396 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001901.label Connecting and filling vertices in path at fillseed 7020 Finding path............................................................................................................................................................................................................................................................................................................................................................................ done Filling 7020 nlabel 8119 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002001.label Connecting and filling vertices in path at fillseed 6521 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 6521 nlabel 16899 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002101.label Connecting and filling vertices in path at fillseed 8803 Finding path............................................................................................................................................................................................................................................................................. done Filling 8803 nlabel 4826 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002201.label Connecting and filling vertices in path at fillseed 8868 Finding path................................................................................................................................................................................................................................................................................................................................................................. done Filling 8868 nlabel 8509 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002301.label Connecting and filling vertices in path at fillseed 7203 Finding path.......................................................................................................................................................................................................................................................................................... done Filling 7203 nlabel 9761 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002401.label Connecting and filling vertices in path at fillseed 5527 Finding path.......................................................................................................................................................................................................................................................................................................................................................... done Filling 5527 nlabel 8053 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002501.label Connecting and filling vertices in path at fillseed 8798 Finding path................................................................................................................................................................................................................................................................................ done Filling 8798 nlabel 5068 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002601.label Connecting and filling vertices in path at fillseed 10821 Finding path.......................................................................................................................................................................................................................................................................................................................... done Filling 10821 nlabel 7159 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002701.label Connecting and filling vertices in path at fillseed 8904 Finding path............................................................................................................................................................................................................................................................................................................................................. done Filling 8904 nlabel 8429 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002801.label Connecting and filling vertices in path at fillseed 8321 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 8321 nlabel 15219 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002901.label Connecting and filling vertices in path at fillseed 8450 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 8450 nlabel 14802 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003001.label Connecting and filling vertices in path at fillseed 10783 Finding path.................................................................................................................................................................................................................................................................................................................... done Filling 10783 nlabel 4745 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003101.label Connecting and filling vertices in path at fillseed 6638 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 6638 nlabel 14378 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003201.label Connecting and filling vertices in path at fillseed 8079 Finding path................................................................................................................................................................................................................................................................................................................... done Filling 8079 nlabel 9445 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003301.label Connecting and filling vertices in path at fillseed 13427 Finding path............................................................................................................................................................................................................................................................................................................... done Filling 13427 nlabel 7405 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003401.label Connecting and filling vertices in path at fillseed 11885 Finding path............................................................................................................................................................ done Filling 11885 nlabel 4134 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003501.label Connecting and filling vertices in path at fillseed 13041 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 13041 nlabel 7278 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003601.label Connecting and filling vertices in path at fillseed 13099 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 13099 nlabel 7807 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003701.label Connecting and filling vertices in path at fillseed 10119 Finding path.......................................................................................................................................................................................................................................................................................................................... done Filling 10119 nlabel 10034 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003801.label Connecting and filling vertices in path at fillseed 11075 Finding path................................................................................................................................................................................................................................................................. done Filling 11075 nlabel 7356 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003901.label Connecting and filling vertices in path at fillseed 11884 Finding path.............................................................................................................................. done Filling 11884 nlabel 3590 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004001.label Connecting and filling vertices in path at fillseed 10537 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 10537 nlabel 15357 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004101.label Connecting and filling vertices in path at fillseed 9240 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 9240 nlabel 11872 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004201.label Connecting and filling vertices in path at fillseed 11171 Finding path.............................................................................................................................................................................................................................................................................................................................. done Filling 11171 nlabel 10289 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004301.label Connecting and filling vertices in path at fillseed 10455 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 10455 nlabel 14623 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004401.label Connecting and filling vertices in path at fillseed 20075 Finding path...................................................................................................................................................................................................................................................................................................................................................... done Filling 20075 nlabel 4840 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004501.label Connecting and filling vertices in path at fillseed 16529 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 16529 nlabel 7681 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004601.label Connecting and filling vertices in path at fillseed 12558 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 12558 nlabel 15421 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004701.label Connecting and filling vertices in path at fillseed 22544 Finding path.............................................................................................................................................. done Filling 22544 nlabel 3133 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004801.label Connecting and filling vertices in path at fillseed 22525 Finding path............................................................................................................................................... done Filling 22525 nlabel 3067 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004901.label Connecting and filling vertices in path at fillseed 20075 Finding path.......................................................................................................................................................................... done Filling 20075 nlabel 4346 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005001.label Connecting and filling vertices in path at fillseed 17769 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 17769 nlabel 8268 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005101.label Connecting and filling vertices in path at fillseed 11180 Finding path....................................................................................................................................................................................................................................................................................................... done Filling 11180 nlabel 10806 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005201.label Connecting and filling vertices in path at fillseed 15818 Finding path....................................................................................................................................................................................................................................................................................................................................... done Filling 15818 nlabel 9611 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005301.label Connecting and filling vertices in path at fillseed 22527 Finding path.......................................................................................................................................................................... done Filling 22527 nlabel 4337 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005401.label Connecting and filling vertices in path at fillseed 20113 Finding path......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 20113 nlabel 7118 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005501.label Connecting and filling vertices in path at fillseed 12462 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 12462 nlabel 13421 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005601.label Connecting and filling vertices in path at fillseed 12128 Finding path............................................................................................................................................................................................................................................................................... done Filling 12128 nlabel 6920 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005701.label Connecting and filling vertices in path at fillseed 22520 Finding path.......................................................................................................................................... done Filling 22520 nlabel 3288 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005801.label Connecting and filling vertices in path at fillseed 13847 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 13847 nlabel 15114 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005901.label Connecting and filling vertices in path at fillseed 18951 Finding path................................................................................................................................................................................................................................................................................................................................................................. done Filling 18951 nlabel 8800 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006001.label Connecting and filling vertices in path at fillseed 14697 Finding path........................................................................................................................................................................................................................................................................................................................................................ done Filling 14697 nlabel 9622 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006101.label Connecting and filling vertices in path at fillseed 22519 Finding path................................................................................................................................................................................................................................................ done Filling 22519 nlabel 3018 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006201.label Connecting and filling vertices in path at fillseed 23764 Finding path................................................................................................................................................................................. done Filling 23764 nlabel 3771 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006301.label Connecting and filling vertices in path at fillseed 14983 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 14983 nlabel 17008 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006401.label Connecting and filling vertices in path at fillseed 19103 Finding path...................................................................................................................................................................................................................................................................................................................................................................... done Filling 19103 nlabel 9958 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006501.label Connecting and filling vertices in path at fillseed 15425 Finding path................................................................................................................................................................................................................................................................................ done Filling 15425 nlabel 6426 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006601.label Connecting and filling vertices in path at fillseed 17448 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 17448 nlabel 14611 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006701.label Connecting and filling vertices in path at fillseed 25027 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 25027 nlabel 7484 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006801.label Connecting and filling vertices in path at fillseed 18398 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 18398 nlabel 12464 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006901.label Connecting and filling vertices in path at fillseed 22585 Finding path......................................................................................................................................................................... done Filling 22585 nlabel 3736 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007001.label Connecting and filling vertices in path at fillseed 16040 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 16040 nlabel 14914 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007101.label Connecting and filling vertices in path at fillseed 27489 Finding path................................................................................................................................................................................................................................... done Filling 27489 nlabel 3785 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007201.label Connecting and filling vertices in path at fillseed 22619 Finding path........................................................................................................................................................................................................................................................................................................ done Filling 22619 nlabel 8235 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007301.label Connecting and filling vertices in path at fillseed 20308 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 20308 nlabel 10122 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007401.label Connecting and filling vertices in path at fillseed 16879 Finding path......................................................................................................................................................................................................................................................................... done Filling 16879 nlabel 7706 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007501.label Connecting and filling vertices in path at fillseed 16283 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 16283 nlabel 14258 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007601.label Connecting and filling vertices in path at fillseed 16158 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 16158 nlabel 15020 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007701.label Connecting and filling vertices in path at fillseed 18350 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 18350 nlabel 7735 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007801.label Connecting and filling vertices in path at fillseed 20660 Finding path............................................................................................................................................................................................................................................................................................................................................................... done Filling 20660 nlabel 10051 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007901.label Connecting and filling vertices in path at fillseed 19850 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 19850 nlabel 16028 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008001.label Connecting and filling vertices in path at fillseed 23843 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 23843 nlabel 8836 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008101.label Connecting and filling vertices in path at fillseed 19539 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 19539 nlabel 11391 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008201.label Connecting and filling vertices in path at fillseed 23773 Finding path................................................................................................................................................... done Filling 23773 nlabel 3384 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008301.label Connecting and filling vertices in path at fillseed 21078 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 21078 nlabel 15784 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008401.label Connecting and filling vertices in path at fillseed 20993 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 20993 nlabel 20508 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008501.label Connecting and filling vertices in path at fillseed 21846 Finding path............................................................................................................................................................................................................................................................................................................................. done Filling 21846 nlabel 7283 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008601.label Connecting and filling vertices in path at fillseed 20295 Finding path................................................................................................................................................................................................................................................................................................................................................ done Filling 20295 nlabel 7226 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008701.label Connecting and filling vertices in path at fillseed 28792 Finding path.................................................................................................................................................................................................. done Filling 28792 nlabel 3736 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008801.label Connecting and filling vertices in path at fillseed 28827 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 28827 nlabel 6572 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008901.label Connecting and filling vertices in path at fillseed 24553 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 24553 nlabel 25542 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009001.label Connecting and filling vertices in path at fillseed 25355 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 25355 nlabel 8056 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009101.label Connecting and filling vertices in path at fillseed 22071 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 22071 nlabel 12758 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009201.label Connecting and filling vertices in path at fillseed 21079 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 21079 nlabel 16641 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009301.label Connecting and filling vertices in path at fillseed 27537 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 27537 nlabel 7984 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009401.label Connecting and filling vertices in path at fillseed 24293 Finding path............................................................................................................................................................................................................................................................................................................................................................................................ done Filling 24293 nlabel 7886 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009501.label Connecting and filling vertices in path at fillseed 34397 Finding path...................................................................................................................................................................................... done Filling 34397 nlabel 3357 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009601.label Connecting and filling vertices in path at fillseed 27484 Finding path....................................................................................................................................................................... done Filling 27484 nlabel 3824 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009701.label Connecting and filling vertices in path at fillseed 31080 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 31080 nlabel 6009 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009801.label Connecting and filling vertices in path at fillseed 24675 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 24675 nlabel 26821 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009901.label Connecting and filling vertices in path at fillseed 27888 Finding path....................................................................................................................................................................................................................................................................................................................................... done Filling 27888 nlabel 9866 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010001.label Connecting and filling vertices in path at fillseed 24344 Finding path............................................................................................................................................................................................................................. done Filling 24344 nlabel 8181 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010101.label Connecting and filling vertices in path at fillseed 23505 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 23505 nlabel 16636 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010201.label Connecting and filling vertices in path at fillseed 27518 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 27518 nlabel 6789 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010301.label Connecting and filling vertices in path at fillseed 25830 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 25830 nlabel 25649 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010401.label Connecting and filling vertices in path at fillseed 24198 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 24198 nlabel 7882 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010501.label Connecting and filling vertices in path at fillseed 35517 Finding path.............................................................................................................................................................. done Filling 35517 nlabel 3509 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010601.label Connecting and filling vertices in path at fillseed 28554 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 28554 nlabel 17132 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010701.label Connecting and filling vertices in path at fillseed 27536 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 27536 nlabel 6811 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010801.label Connecting and filling vertices in path at fillseed 29452 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 29452 nlabel 10949 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010901.label Connecting and filling vertices in path at fillseed 25239 Finding path................................................................................................................................................................................. done Filling 25239 nlabel 6453 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011001.label Connecting and filling vertices in path at fillseed 36643 Finding path.................................................................................................................................................... done Filling 36643 nlabel 2050 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011101.label Connecting and filling vertices in path at fillseed 38851 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 38851 nlabel 6433 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011201.label Connecting and filling vertices in path at fillseed 28342 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 28342 nlabel 12068 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011301.label Connecting and filling vertices in path at fillseed 28875 Finding path................................................................................................................................................................................ done Filling 28875 nlabel 5710 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011401.label Connecting and filling vertices in path at fillseed 29732 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 29732 nlabel 13464 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011501.label Connecting and filling vertices in path at fillseed 35515 Finding path................................................................................................................................................................................................................................................................................................................................................... done Filling 35515 nlabel 3565 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011601.label Connecting and filling vertices in path at fillseed 28944 Finding path....................................................................................................................................................................................................................................................................................................................................................................... done Filling 28944 nlabel 9547 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011701.label Connecting and filling vertices in path at fillseed 36681 Finding path............................................................................................................................................................................... done Filling 36681 nlabel 3538 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011801.label Connecting and filling vertices in path at fillseed 30610 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 30610 nlabel 7995 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011901.label Connecting and filling vertices in path at fillseed 30906 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 30906 nlabel 19349 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012001.label Connecting and filling vertices in path at fillseed 37824 Finding path............................................................................................................................................................................................................................................................................................................................................................................................ done Filling 37824 nlabel 7700 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012101.label Connecting and filling vertices in path at fillseed 32708 Finding path........................................................................................................................................................................................................................................................................................................................ done Filling 32708 nlabel 8873 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012201.label Connecting and filling vertices in path at fillseed 32395 Finding path...................................................................................................................................................................................... done Filling 32395 nlabel 5907 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012301.label Connecting and filling vertices in path at fillseed 31880 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 31880 nlabel 16728 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012401.label Connecting and filling vertices in path at fillseed 38841 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 38841 nlabel 6132 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012501.label Connecting and filling vertices in path at fillseed 30107 Finding path......................................................................................................................................................................................................................................................................................................................................................................... done Filling 30107 nlabel 9131 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012601.label Connecting and filling vertices in path at fillseed 38856 Finding path................................................................................................................................................................................................................. done Filling 38856 nlabel 4685 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012701.label Connecting and filling vertices in path at fillseed 33939 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 33939 nlabel 13005 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012801.label Connecting and filling vertices in path at fillseed 37719 Finding path..................................................................................................................................................................................................................... done Filling 37719 nlabel 3908 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012901.label Connecting and filling vertices in path at fillseed 32999 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 32999 nlabel 24811 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013001.label Connecting and filling vertices in path at fillseed 33686 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 33686 nlabel 8479 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013101.label Connecting and filling vertices in path at fillseed 29332 Finding path................................................................................................................................................................................................................................................................................................... done Filling 29332 nlabel 8135 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013201.label Connecting and filling vertices in path at fillseed 34104 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 34104 nlabel 15717 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013301.label Connecting and filling vertices in path at fillseed 36383 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 36383 nlabel 24417 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013401.label Connecting and filling vertices in path at fillseed 38322 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 38322 nlabel 23863 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013501.label Connecting and filling vertices in path at fillseed 36046 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 36046 nlabel 7110 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013601.label Connecting and filling vertices in path at fillseed 35046 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 35046 nlabel 8743 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013701.label Connecting and filling vertices in path at fillseed 39818 Finding path........................................................................................................................................................................................................... done Filling 39818 nlabel 3673 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013801.label Connecting and filling vertices in path at fillseed 35156 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 35156 nlabel 24970 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013901.label Connecting and filling vertices in path at fillseed 40156 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 40156 nlabel 8829 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014001.label Connecting and filling vertices in path at fillseed 38831 Finding path........................................................................................................................................................................................................................ done Filling 38831 nlabel 3949 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014101.label Connecting and filling vertices in path at fillseed 37701 Finding path................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 37701 nlabel 2362 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014201.label Connecting and filling vertices in path at fillseed 46223 Finding path............................................................................................................................................................................................................ done Filling 46223 nlabel 3797 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014301.label Connecting and filling vertices in path at fillseed 43102 Finding path.......................................................................................................................................................................................................................................................................................................................................................... done Filling 43102 nlabel 7972 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014401.label Connecting and filling vertices in path at fillseed 37080 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 37080 nlabel 7866 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014501.label Connecting and filling vertices in path at fillseed 38799 Finding path....................................................................................................................................................................................................................... done Filling 38799 nlabel 2280 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014601.label Connecting and filling vertices in path at fillseed 38415 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 38415 nlabel 13793 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014701.label Connecting and filling vertices in path at fillseed 42037 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 42037 nlabel 6758 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014801.label Connecting and filling vertices in path at fillseed 46449 Finding path........................................................................................................................................................................................................................................................................................................................................................................................... done Filling 46449 nlabel 7957 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014901.label Connecting and filling vertices in path at fillseed 37760 Finding path................................................................................................................................................................................................ done Filling 37760 nlabel 4406 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015001.label Connecting and filling vertices in path at fillseed 38397 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 38397 nlabel 8845 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015101.label Connecting and filling vertices in path at fillseed 46235 Finding path..................................................................................................................................................................................................... done Filling 46235 nlabel 4087 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015201.label Connecting and filling vertices in path at fillseed 37433 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 37433 nlabel 23947 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015301.label Connecting and filling vertices in path at fillseed 39213 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 39213 nlabel 7979 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015401.label Connecting and filling vertices in path at fillseed 46213 Finding path.................................................................................................................................................................................................................................................................................................................................. done Filling 46213 nlabel 1873 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015501.label Connecting and filling vertices in path at fillseed 41684 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 41684 nlabel 8519 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015601.label Connecting and filling vertices in path at fillseed 46235 Finding path......................................................................................................................................................................................................................................... done Filling 46235 nlabel 4188 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015701.label Connecting and filling vertices in path at fillseed 45246 Finding path................................................................................................................................................................................................................................................................................................................................................................. done Filling 45246 nlabel 7811 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015801.label Connecting and filling vertices in path at fillseed 39418 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 39418 nlabel 21555 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015901.label Connecting and filling vertices in path at fillseed 38002 Finding path.............................................................................................................................................................................. done Filling 38002 nlabel 6043 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016001.label Connecting and filling vertices in path at fillseed 47327 Finding path................................................................................................................................................................................................ done Filling 47327 nlabel 2324 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016101.label Connecting and filling vertices in path at fillseed 46210 Finding path........................................................................................................................................................................................................... done Filling 46210 nlabel 3933 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016201.label Connecting and filling vertices in path at fillseed 43089 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 43089 nlabel 7895 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016301.label Connecting and filling vertices in path at fillseed 39350 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 39350 nlabel 9029 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016401.label Connecting and filling vertices in path at fillseed 36862 Finding path................................................................................................................................................................................................. done Filling 36862 nlabel 6101 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016501.label Connecting and filling vertices in path at fillseed 43683 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 43683 nlabel 10445 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016601.label Connecting and filling vertices in path at fillseed 42820 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 42820 nlabel 23435 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016701.label Connecting and filling vertices in path at fillseed 47535 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 47535 nlabel 7662 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016801.label Connecting and filling vertices in path at fillseed 40525 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 40525 nlabel 24308 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016901.label Connecting and filling vertices in path at fillseed 36822 Finding path................................................................................................................................................................................................ done Filling 36822 nlabel 6236 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017001.label Connecting and filling vertices in path at fillseed 47345 Finding path.................................................................................................................................................................................................... done Filling 47345 nlabel 3224 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017101.label Connecting and filling vertices in path at fillseed 48507 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 48507 nlabel 7021 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017201.label Connecting and filling vertices in path at fillseed 48724 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 48724 nlabel 7255 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017301.label Connecting and filling vertices in path at fillseed 47361 Finding path.............................................................................................................................................. done Filling 47361 nlabel 2985 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017401.label Connecting and filling vertices in path at fillseed 48392 Finding path....................................................................................................................................... done Filling 48392 nlabel 1898 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017501.label Connecting and filling vertices in path at fillseed 46047 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 46047 nlabel 23101 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017601.label Connecting and filling vertices in path at fillseed 50762 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 50762 nlabel 6689 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017701.label Connecting and filling vertices in path at fillseed 49675 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 49675 nlabel 7988 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017801.label Connecting and filling vertices in path at fillseed 41499 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 41499 nlabel 9645 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017901.label Connecting and filling vertices in path at fillseed 44082 Finding path............................................................................................................................................................... done Filling 44082 nlabel 4516 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018001.label Connecting and filling vertices in path at fillseed 48104 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 48104 nlabel 9106 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018101.label Connecting and filling vertices in path at fillseed 53926 Finding path.................................................................................................................................................................................................................................................................................................................. done Filling 53926 nlabel 6150 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018201.label Connecting and filling vertices in path at fillseed 47497 Finding path.................................................................................................................................................................................................................................................................................................................................................................................... done Filling 47497 nlabel 8070 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018301.label Connecting and filling vertices in path at fillseed 41525 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 41525 nlabel 9799 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018401.label Connecting and filling vertices in path at fillseed 47670 Finding path.................................................................................................................................................................................. done Filling 47670 nlabel 6242 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018501.label Connecting and filling vertices in path at fillseed 43699 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 43699 nlabel 23679 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018601.label Connecting and filling vertices in path at fillseed 43741 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 43741 nlabel 25610 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018701.label Connecting and filling vertices in path at fillseed 44530 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 44530 nlabel 9383 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018801.label Connecting and filling vertices in path at fillseed 46394 Finding path........................................................................................................................................................................................ done Filling 46394 nlabel 5811 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018901.label Connecting and filling vertices in path at fillseed 51805 Finding path............................................................................................................................... done Filling 51805 nlabel 2278 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019001.label Connecting and filling vertices in path at fillseed 44824 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 44824 nlabel 25025 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019101.label Connecting and filling vertices in path at fillseed 45722 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 45722 nlabel 8847 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019201.label Connecting and filling vertices in path at fillseed 47387 Finding path..................................................................................................................................................... done Filling 47387 nlabel 4196 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019301.label Connecting and filling vertices in path at fillseed 48098 Finding path.............................................................................................................................................................................................................................................................................................................................................................. done Filling 48098 nlabel 8262 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019401.label Connecting and filling vertices in path at fillseed 51872 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 51872 nlabel 9128 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019501.label Connecting and filling vertices in path at fillseed 49184 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 49184 nlabel 23062 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019601.label Connecting and filling vertices in path at fillseed 48455 Finding path............................................................................................................................. done Filling 48455 nlabel 4397 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019701.label Connecting and filling vertices in path at fillseed 51805 Finding path.................................................................................................................. done Filling 51805 nlabel 1913 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019801.label Connecting and filling vertices in path at fillseed 56919 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 56919 nlabel 23980 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019901.label Connecting and filling vertices in path at fillseed 51587 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 51587 nlabel 22963 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020001.label Connecting and filling vertices in path at fillseed 52418 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 52418 nlabel 9397 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020101.label Connecting and filling vertices in path at fillseed 48656 Finding path.................................................................................................................................................. done Filling 48656 nlabel 5139 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020201.label Connecting and filling vertices in path at fillseed 51806 Finding path.......................................................................................................................... done Filling 51806 nlabel 2464 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020301.label Connecting and filling vertices in path at fillseed 51875 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 51875 nlabel 7647 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020401.label Connecting and filling vertices in path at fillseed 52068 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 52068 nlabel 8503 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020501.label Connecting and filling vertices in path at fillseed 50727 Finding path...................................................................................................................................... done Filling 50727 nlabel 4389 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020601.label Connecting and filling vertices in path at fillseed 50250 Finding path..................................................................................................................................................................................................................................................................................................... done Filling 50250 nlabel 5598 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020701.label Connecting and filling vertices in path at fillseed 47346 Finding path............................................................................................................................................................................................................................................ done Filling 47346 nlabel 5319 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020801.label Connecting and filling vertices in path at fillseed 53967 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 53967 nlabel 9309 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020901.label Connecting and filling vertices in path at fillseed 49052 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 49052 nlabel 10076 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021001.label Connecting and filling vertices in path at fillseed 51910 Finding path..................................................................................................................................................... done Filling 51910 nlabel 5112 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021101.label Connecting and filling vertices in path at fillseed 56751 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 56751 nlabel 9488 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021201.label Connecting and filling vertices in path at fillseed 52897 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 52897 nlabel 7339 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021301.label Connecting and filling vertices in path at fillseed 54065 Finding path................................................................................................................................................................................................................................................................................................................................................................................. done Filling 54065 nlabel 7419 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021401.label Connecting and filling vertices in path at fillseed 53883 Finding path.................................................................................................................................................. done Filling 53883 nlabel 1073 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021501.label Connecting and filling vertices in path at fillseed 51333 Finding path................................................................................................................................................................................................................................................................................................................................ done Filling 51333 nlabel 5848 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021601.label Connecting and filling vertices in path at fillseed 56917 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 56917 nlabel 21590 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021701.label Connecting and filling vertices in path at fillseed 55051 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 55051 nlabel 7212 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021801.label Connecting and filling vertices in path at fillseed 54463 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 54463 nlabel 8918 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021901.label Connecting and filling vertices in path at fillseed 54255 Finding path......................................................................................................................................................................................... done Filling 54255 nlabel 6625 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022001.label Connecting and filling vertices in path at fillseed 55700 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 55700 nlabel 22428 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022101.label Connecting and filling vertices in path at fillseed 54680 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 54680 nlabel 23254 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022201.label Connecting and filling vertices in path at fillseed 55274 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 55274 nlabel 6822 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022301.label Connecting and filling vertices in path at fillseed 53929 Finding path............................................................................................................................................................................................... done Filling 53929 nlabel 4244 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022401.label Connecting and filling vertices in path at fillseed 57826 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 57826 nlabel 7969 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022501.label Connecting and filling vertices in path at fillseed 58325 Finding path....................................................................................................................................................................................................................................................... done Filling 58325 nlabel 5261 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022601.label Connecting and filling vertices in path at fillseed 57289 Finding path.............................................................................................................................................................................................................................................................................................................................. done Filling 57289 nlabel 6633 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022701.label Connecting and filling vertices in path at fillseed 57605 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 57605 nlabel 7902 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022801.label Connecting and filling vertices in path at fillseed 53002 Finding path........................................................................................................................................................................ done Filling 53002 nlabel 5459 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022901.label Connecting and filling vertices in path at fillseed 64814 Finding path................................................................................................................................ done Filling 64814 nlabel 2487 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023001.label Connecting and filling vertices in path at fillseed 56101 Finding path............................................................................................................................................................................................................................................................................................................................................................... done Filling 56101 nlabel 7089 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023101.label Connecting and filling vertices in path at fillseed 57426 Finding path........................................................................................................................................................................................................................................................................................................................... done Filling 57426 nlabel 7778 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023201.label Connecting and filling vertices in path at fillseed 57214 Finding path...................................................................................................................................................................................................................... done Filling 57214 nlabel 3450 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023301.label Connecting and filling vertices in path at fillseed 58913 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 58913 nlabel 6178 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023401.label Connecting and filling vertices in path at fillseed 58327 Finding path.................................................................................................................................................................................................................................... done Filling 58327 nlabel 5316 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023501.label Connecting and filling vertices in path at fillseed 57980 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 57980 nlabel 23119 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023601.label Connecting and filling vertices in path at fillseed 58834 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 58834 nlabel 9133 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023701.label Connecting and filling vertices in path at fillseed 58653 Finding path..................................................................................................................................................................................... done Filling 58653 nlabel 6803 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023801.label Connecting and filling vertices in path at fillseed 59071 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 59071 nlabel 22304 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023901.label Connecting and filling vertices in path at fillseed 58429 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 58429 nlabel 6531 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024001.label Connecting and filling vertices in path at fillseed 58724 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 58724 nlabel 8997 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024101.label Connecting and filling vertices in path at fillseed 59471 Finding path....................................................................................................................................................................... done Filling 59471 nlabel 4660 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024201.label Connecting and filling vertices in path at fillseed 60168 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60168 nlabel 23851 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024301.label Connecting and filling vertices in path at fillseed 60275 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60275 nlabel 19007 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024401.label Connecting and filling vertices in path at fillseed 59760 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 59760 nlabel 8633 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024501.label Connecting and filling vertices in path at fillseed 59447 Finding path................................................................................................................................ done Filling 59447 nlabel 3368 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024601.label Connecting and filling vertices in path at fillseed 60167 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60167 nlabel 22835 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024701.label Connecting and filling vertices in path at fillseed 61752 Finding path................................................................................................................................................................................................................................................................................................................................ done Filling 61752 nlabel 6387 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024801.label Connecting and filling vertices in path at fillseed 60966 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60966 nlabel 7645 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024901.label Connecting and filling vertices in path at fillseed 60635 Finding path................................................................................................................................................................. done Filling 60635 nlabel 4834 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025001.label Connecting and filling vertices in path at fillseed 60167 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60167 nlabel 23556 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025101.label Connecting and filling vertices in path at fillseed 62811 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 62811 nlabel 7373 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025201.label Connecting and filling vertices in path at fillseed 65112 Finding path................................................................................................................................................................................................................................................................................................... done Filling 65112 nlabel 6101 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025301.label Connecting and filling vertices in path at fillseed 71566 Finding path............................................................................................................................ done Filling 71566 nlabel 1712 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025401.label Connecting and filling vertices in path at fillseed 63309 Finding path..................................................................................................................................................................................... done Filling 63309 nlabel 5521 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025501.label Connecting and filling vertices in path at fillseed 63564 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 63564 nlabel 18628 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025601.label Connecting and filling vertices in path at fillseed 62398 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 62398 nlabel 21467 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025701.label Connecting and filling vertices in path at fillseed 71566 Finding path........................................................................................................................................................................ done Filling 71566 nlabel 889 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025801.label Connecting and filling vertices in path at fillseed 63862 Finding path.................................................................................................................................................................................. done Filling 63862 nlabel 4375 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025901.label Connecting and filling vertices in path at fillseed 66951 Finding path......................................................................................................................................................................................................................................... done Filling 66951 nlabel 4361 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026001.label Connecting and filling vertices in path at fillseed 61328 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 61328 nlabel 20172 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026101.label Connecting and filling vertices in path at fillseed 63373 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 63373 nlabel 11014 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026201.label Connecting and filling vertices in path at fillseed 60573 Finding path........................................................................................................................................................................................................................... done Filling 60573 nlabel 2344 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026301.label Connecting and filling vertices in path at fillseed 66951 Finding path.............................................................................................................................................................................................................................. done Filling 66951 nlabel 4292 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026401.label Connecting and filling vertices in path at fillseed 65974 Finding path..................................................................................................................................................................................................................................................................................................................................................................................... done Filling 65974 nlabel 6664 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026501.label Connecting and filling vertices in path at fillseed 63147 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 63147 nlabel 7234 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026601.label Connecting and filling vertices in path at fillseed 66041 Finding path...................................................................................................................................................................... done Filling 66041 nlabel 5816 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026701.label Connecting and filling vertices in path at fillseed 67532 Finding path................................................................................................................................................ done Filling 67532 nlabel 5308 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026801.label Connecting and filling vertices in path at fillseed 66700 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 66700 nlabel 18406 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026901.label Connecting and filling vertices in path at fillseed 60787 Finding path............................................................................................................................................................................................................................................................................................................................................................................................ done Filling 60787 nlabel 6321 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027001.label Connecting and filling vertices in path at fillseed 73709 Finding path......................................................................................................................................................................................................................................................... done Filling 73709 nlabel 1468 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027101.label Connecting and filling vertices in path at fillseed 71562 Finding path............................................................................................................................... done Filling 71562 nlabel 1809 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027201.label Connecting and filling vertices in path at fillseed 65857 Finding path.................................................................................................................................................................................................................................... done Filling 65857 nlabel 4204 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027301.label Connecting and filling vertices in path at fillseed 60787 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60787 nlabel 6330 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027401.label Connecting and filling vertices in path at fillseed 73709 Finding path.............................................................................................................................................................................. done Filling 73709 nlabel 905 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027501.label Connecting and filling vertices in path at fillseed 71562 Finding path.................................................................................................................................... done Filling 71562 nlabel 1786 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027601.label Connecting and filling vertices in path at fillseed 66953 Finding path........................................................................................................................................................................................................................................................ done Filling 66953 nlabel 4784 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027701.label Connecting and filling vertices in path at fillseed 65992 Finding path........................................................................................................................................................................................................................................................................................................................................................................................... done Filling 65992 nlabel 6120 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027801.label Connecting and filling vertices in path at fillseed 69973 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 69973 nlabel 9573 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027901.label Connecting and filling vertices in path at fillseed 72621 Finding path........................................................................................................................................................................................ done Filling 72621 nlabel 923 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028001.label Connecting and filling vertices in path at fillseed 66951 Finding path................................................................................................................................................................................................................................................................................ done Filling 66951 nlabel 4852 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028101.label Connecting and filling vertices in path at fillseed 67078 Finding path...................................................................................................................................................................................................................................................................................................................................................................... done Filling 67078 nlabel 5480 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028201.label Connecting and filling vertices in path at fillseed 72121 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 72121 nlabel 11438 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028301.label Connecting and filling vertices in path at fillseed 70528 Finding path................................................................................................................................................................................................................... done Filling 70528 nlabel 3805 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028401.label Connecting and filling vertices in path at fillseed 68897 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 68897 nlabel 19391 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028501.label Connecting and filling vertices in path at fillseed 68159 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 68159 nlabel 6971 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028601.label Connecting and filling vertices in path at fillseed 68380 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 68380 nlabel 6231 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028701.label Connecting and filling vertices in path at fillseed 73717 Finding path.................................................................................................................. done Filling 73717 nlabel 2058 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028801.label Connecting and filling vertices in path at fillseed 73195 Finding path............................................................................................................................................ done Filling 73195 nlabel 5741 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028901.label Connecting and filling vertices in path at fillseed 71313 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 71313 nlabel 17295 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029001.label Connecting and filling vertices in path at fillseed 72357 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 72357 nlabel 120941 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029101.label Connecting and filling vertices in path at fillseed 74006 Finding path................................................................................................................................................................................................................................................... done Filling 74006 nlabel 4744 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029201.label Connecting and filling vertices in path at fillseed 73703 Finding path...................................................................................................................................................................................................................................... done Filling 73703 nlabel 2329 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029301.label Connecting and filling vertices in path at fillseed 73461 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 73461 nlabel 14728 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029401.label Connecting and filling vertices in path at fillseed 73866 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 73866 nlabel 5470 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029501.label Connecting and filling vertices in path at fillseed 74118 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 74118 nlabel 9326 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029601.label Connecting and filling vertices in path at fillseed 72763 Finding path........................................................................................................................................................................................ done Filling 72763 nlabel 5088 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029701.label Connecting and filling vertices in path at fillseed 69955 Finding path................................................................................................................................................. done Filling 69955 nlabel 6084 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029801.label Connecting and filling vertices in path at fillseed 74471 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 74471 nlabel 16173 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029901.label Connecting and filling vertices in path at fillseed 68371 Finding path............................................................................................................................................................................................................................................................................................................................................................................ done Filling 68371 nlabel 7813 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030001.label Connecting and filling vertices in path at fillseed 74726 Finding path..................................................................................................................... done Filling 74726 nlabel 1638 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030101.label Connecting and filling vertices in path at fillseed 77288 Finding path.................................................................................................................................................................................................... done Filling 77288 nlabel 6194 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030201.label Connecting and filling vertices in path at fillseed 72623 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 72623 nlabel 6287 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030301.label Connecting and filling vertices in path at fillseed 72761 Finding path..................................................................................................................................................................................................................................................................................................................................................................................... done Filling 72761 nlabel 8392 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030401.label Connecting and filling vertices in path at fillseed 75144 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 75144 nlabel 11753 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030501.label Connecting and filling vertices in path at fillseed 75825 Finding path................................................................................................................ done Filling 75825 nlabel 1259 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030601.label Connecting and filling vertices in path at fillseed 75834 Finding path........................................................................................................................................................................................................................................... done Filling 75834 nlabel 2518 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030701.label Connecting and filling vertices in path at fillseed 76564 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 76564 nlabel 3848 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030801.label Connecting and filling vertices in path at fillseed 74500 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 74500 nlabel 122971 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030901.label Connecting and filling vertices in path at fillseed 75199 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 75199 nlabel 13055 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031001.label Connecting and filling vertices in path at fillseed 75848 Finding path.......................................................................................................................................................... done Filling 75848 nlabel 2904 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031101.label Connecting and filling vertices in path at fillseed 82893 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 82893 nlabel 5499 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031201.label Connecting and filling vertices in path at fillseed 128944 Finding path..................................................................................................................................................................................................................................................................................................................................................................................... done Filling 128944 nlabel 5409 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031301.label Connecting and filling vertices in path at fillseed 79198 Finding path...................................................................................................................................................................................................................................................................................................................................................................... done Filling 79198 nlabel 8205 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031401.label Connecting and filling vertices in path at fillseed 77181 Finding path........................................................................................................................................................................ done Filling 77181 nlabel 5375 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031501.label Connecting and filling vertices in path at fillseed 80589 Finding path......................................................................................................... done Filling 80589 nlabel 5532 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031601.label Connecting and filling vertices in path at fillseed 79686 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 79686 nlabel 4060 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031701.label Connecting and filling vertices in path at fillseed 77086 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 77086 nlabel 5756 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031801.label Connecting and filling vertices in path at fillseed 76302 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 76302 nlabel 13429 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031901.label Connecting and filling vertices in path at fillseed 79346 Finding path.......................................................................................................................................................................................................... done Filling 79346 nlabel 6692 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032001.label Connecting and filling vertices in path at fillseed 76932 Finding path.................................................................................................................................................................................................................................................................................................................................. done Filling 76932 nlabel 5715 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032101.label Connecting and filling vertices in path at fillseed 81129 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 81129 nlabel 6957 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032201.label Connecting and filling vertices in path at fillseed 76173 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 76173 nlabel 13452 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032301.label Connecting and filling vertices in path at fillseed 78909 Finding path............................................................................................... done Filling 78909 nlabel 2399 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032401.label Connecting and filling vertices in path at fillseed 81685 Finding path................................................................................................................. done Filling 81685 nlabel 5281 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032501.label Connecting and filling vertices in path at fillseed 78932 Finding path.......................................................................................................................................................................... done Filling 78932 nlabel 5433 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032601.label Connecting and filling vertices in path at fillseed 78063 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 78063 nlabel 5747 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032701.label Connecting and filling vertices in path at fillseed 81710 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 81710 nlabel 11667 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032801.label Connecting and filling vertices in path at fillseed 81547 Finding path.................................................................................................................................................................................................................... done Filling 81547 nlabel 5051 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032901.label Connecting and filling vertices in path at fillseed 83933 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 83933 nlabel 5349 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033001.label Connecting and filling vertices in path at fillseed 82214 Finding path................................................................................................................................................................................................................................................................................................................................................................. done Filling 82214 nlabel 7425 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033101.label Connecting and filling vertices in path at fillseed 129122 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 129122 nlabel 11876 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033201.label Connecting and filling vertices in path at fillseed 78909 Finding path........................................................................................ done Filling 78909 nlabel 2260 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033301.label Connecting and filling vertices in path at fillseed 83782 Finding path.................................................................................................................. done Filling 83782 nlabel 5296 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033401.label Connecting and filling vertices in path at fillseed 77924 Finding path............................................................................................................................................................................................................ done Filling 77924 nlabel 4684 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033501.label Connecting and filling vertices in path at fillseed 82907 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 82907 nlabel 5655 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033601.label Connecting and filling vertices in path at fillseed 85748 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 85748 nlabel 14239 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033701.label Connecting and filling vertices in path at fillseed 83236 Finding path....................................................................................................................................................................................... done Filling 83236 nlabel 3859 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033801.label Connecting and filling vertices in path at fillseed 75834 Finding path......................................................................................................................................................................................................................................... done Filling 75834 nlabel 4701 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033901.label Connecting and filling vertices in path at fillseed 83248 Finding path..................................................................................................................................................................................................................................................................................................................................................................................... done Filling 83248 nlabel 7120 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034001.label Connecting and filling vertices in path at fillseed 84563 Finding path......................................................................................................................................................................................................................................................................................................................................................... done Filling 84563 nlabel 8471 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034101.label Connecting and filling vertices in path at fillseed 85417 Finding path.................................................................................................................................................................. done Filling 85417 nlabel 4876 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034201.label Connecting and filling vertices in path at fillseed 85927 Finding path................................................................................................................................................. done Filling 85927 nlabel 5128 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034301.label Connecting and filling vertices in path at fillseed 81065 Finding path.............................................................................................................................................................................. done Filling 81065 nlabel 4846 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034401.label Connecting and filling vertices in path at fillseed 80131 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 80131 nlabel 8051 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034501.label Connecting and filling vertices in path at fillseed 86814 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 86814 nlabel 14118 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034601.label Connecting and filling vertices in path at fillseed 84289 Finding path....................................................................................................................................................................... done Filling 84289 nlabel 4024 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034701.label Connecting and filling vertices in path at fillseed 76940 Finding path.............................................................................. done Filling 76940 nlabel 1326 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034801.label Connecting and filling vertices in path at fillseed 81075 Finding path....................................................................................................................................................................... done Filling 81075 nlabel 5411 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034901.label Connecting and filling vertices in path at fillseed 80131 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 80131 nlabel 7788 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035001.label Connecting and filling vertices in path at fillseed 86843 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 86843 nlabel 11258 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035101.label Connecting and filling vertices in path at fillseed 81040 Finding path.................................................................................. done Filling 81040 nlabel 2152 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035201.label Connecting and filling vertices in path at fillseed 88117 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 88117 nlabel 5300 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035301.label Connecting and filling vertices in path at fillseed 87188 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 87188 nlabel 1318 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035401.label Connecting and filling vertices in path at fillseed 85573 Finding path........................................................................................................................................................................................................................................................................................................ done Filling 85573 nlabel 8557 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035501.label Connecting and filling vertices in path at fillseed 86502 Finding path.................................................................................................................................................................... done Filling 86502 nlabel 4644 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035601.label Connecting and filling vertices in path at fillseed 79935 Finding path......................................................................................................................... done Filling 79935 nlabel 1263 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035701.label Connecting and filling vertices in path at fillseed 82156 Finding path..................................................................................................................................................................... done Filling 82156 nlabel 5297 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035801.label Connecting and filling vertices in path at fillseed 88519 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 88519 nlabel 9638 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035901.label Connecting and filling vertices in path at fillseed 88042 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 88042 nlabel 11796 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036001.label Connecting and filling vertices in path at fillseed 86350 Finding path.................................................................................................................................................................................................... done Filling 86350 nlabel 2891 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036101.label Connecting and filling vertices in path at fillseed 79923 Finding path........................................................................................................................................................................................................................... done Filling 79923 nlabel 4637 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036201.label Connecting and filling vertices in path at fillseed 90080 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 90080 nlabel 127353 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036301.label Connecting and filling vertices in path at fillseed 88704 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 88704 nlabel 11546 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036401.label Connecting and filling vertices in path at fillseed 88578 Finding path................................................................................................................................................................. done Filling 88578 nlabel 5062 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036501.label Connecting and filling vertices in path at fillseed 90870 Finding path......................................................................................................................................................................................................... done Filling 90870 nlabel 5458 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036601.label Connecting and filling vertices in path at fillseed 88209 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 88209 nlabel 4293 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036701.label Connecting and filling vertices in path at fillseed 88518 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 88518 nlabel 9739 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036801.label Connecting and filling vertices in path at fillseed 88778 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 88778 nlabel 12275 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036901.label Connecting and filling vertices in path at fillseed 87435 Finding path.......................................................................................................................................................................................... done Filling 87435 nlabel 3039 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037001.label Connecting and filling vertices in path at fillseed 92922 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 92922 nlabel 5689 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037101.label Connecting and filling vertices in path at fillseed 84303 Finding path................................................................................................................................................................................................................................................................................................................................................................................ done Filling 84303 nlabel 6870 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037201.label Connecting and filling vertices in path at fillseed 86659 Finding path............................................................................................................................................................................................................................................................................................................................................ done Filling 86659 nlabel 7945 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037301.label Connecting and filling vertices in path at fillseed 81040 Finding path............................................................... done Filling 81040 nlabel 1636 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037401.label Connecting and filling vertices in path at fillseed 90877 Finding path......................................................................................................................................................................................................................................................................... done Filling 90877 nlabel 5474 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037501.label Connecting and filling vertices in path at fillseed 89165 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 89165 nlabel 4336 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037601.label Connecting and filling vertices in path at fillseed 91416 Finding path.................................................................................................................................................................................................................................................................................................................................... done Filling 91416 nlabel 7738 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037701.label Connecting and filling vertices in path at fillseed 90790 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 90790 nlabel 12395 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037801.label Connecting and filling vertices in path at fillseed 92711 Finding path............................................................................................................................................................................. done Filling 92711 nlabel 5116 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037901.label Connecting and filling vertices in path at fillseed 78916 Finding path............................................................................................................................................................................................. done Filling 78916 nlabel 4763 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038001.label Connecting and filling vertices in path at fillseed 91050 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 91050 nlabel 126142 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038101.label Connecting and filling vertices in path at fillseed 93397 Finding path................................................................................................................................................................................................................................................................................................................................................................. done Filling 93397 nlabel 7934 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038201.label Connecting and filling vertices in path at fillseed 82141 Finding path...................................................................... done Filling 82141 nlabel 2214 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038301.label Connecting and filling vertices in path at fillseed 79936 Finding path...................................................... done Filling 79936 nlabel 1369 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038401.label Connecting and filling vertices in path at fillseed 129349 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 129349 nlabel 4135 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038501.label Connecting and filling vertices in path at fillseed 91955 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 91955 nlabel 6042 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038601.label Connecting and filling vertices in path at fillseed 91819 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 91819 nlabel 121128 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038701.label Connecting and filling vertices in path at fillseed 95720 Finding path................................................................................................................................................................................. done Filling 95720 nlabel 5778 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038801.label Connecting and filling vertices in path at fillseed 94261 Finding path.................................................................................................................................................................. done Filling 94261 nlabel 4768 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038901.label Connecting and filling vertices in path at fillseed 93058 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 93058 nlabel 510 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039001.label Connecting and filling vertices in path at fillseed 91673 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 91673 nlabel 12082 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039101.label Connecting and filling vertices in path at fillseed 95619 Finding path................................................................................................................................................................................... done Filling 95619 nlabel 4604 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039201.label Connecting and filling vertices in path at fillseed 78928 Finding path................................................................................................................................................................................................ done Filling 78928 nlabel 4695 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039301.label Connecting and filling vertices in path at fillseed 97250 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 97250 nlabel 5451 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039401.label Connecting and filling vertices in path at fillseed 88712 Finding path.......................................................................................................................................................................................................................................................................................................................................... done Filling 88712 nlabel 7705 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039501.label Connecting and filling vertices in path at fillseed 95525 Finding path............................................................................................................................................................ done Filling 95525 nlabel 4986 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039601.label Connecting and filling vertices in path at fillseed 98670 Finding path................................................................................................................................................................................................................................................................................................................................................................................. done Filling 98670 nlabel 6107 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039701.label Connecting and filling vertices in path at fillseed 98162 Finding path........................................................................................................................................................................................................................................................... done Filling 98162 nlabel 4914 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039801.label Connecting and filling vertices in path at fillseed 93395 Finding path...................................................................................................................................................................................................................................................................................................................................................................................... done Filling 93395 nlabel 8139 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039901.label Connecting and filling vertices in path at fillseed 97468 Finding path......................................................................................................... done Filling 97468 nlabel 4891 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040001.label Connecting and filling vertices in path at fillseed 97661 Finding path............................................................................................................................................................................................................................................................................................ done Filling 97661 nlabel 5900 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040101.label Connecting and filling vertices in path at fillseed 95250 Finding path........................................................................................................................................................................................................................... done Filling 95250 nlabel 4974 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040201.label Connecting and filling vertices in path at fillseed 97266 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 97266 nlabel 8411 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040301.label Connecting and filling vertices in path at fillseed 92621 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 92621 nlabel 12835 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040401.label Connecting and filling vertices in path at fillseed 97441 Finding path.................................................................................................................................................................................... done Filling 97441 nlabel 4185 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040501.label Connecting and filling vertices in path at fillseed 99522 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 99522 nlabel 5713 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040601.label Connecting and filling vertices in path at fillseed 98162 Finding path................................................................................................................................................................................................................................................................................................................... done Filling 98162 nlabel 4979 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040701.label Connecting and filling vertices in path at fillseed 96395 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 96395 nlabel 7185 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040801.label Connecting and filling vertices in path at fillseed 93681 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 93681 nlabel 14493 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040901.label Connecting and filling vertices in path at fillseed 100484 Finding path............................................. done Filling 100484 nlabel 1509 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041001.label Connecting and filling vertices in path at fillseed 101847 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 101847 nlabel 126088 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041101.label Connecting and filling vertices in path at fillseed 98171 Finding path.................................................................................................................................................................................................................................................................................................................................................................................... done Filling 98171 nlabel 5781 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041201.label Connecting and filling vertices in path at fillseed 92708 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 92708 nlabel 14245 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041301.label Connecting and filling vertices in path at fillseed 101277 Finding path...................................................................................... done Filling 101277 nlabel 2413 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041401.label Connecting and filling vertices in path at fillseed 98113 Finding path............................................................................................................................................................................................. done Filling 98113 nlabel 3616 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041501.label Connecting and filling vertices in path at fillseed 98162 Finding path.................................................................................................................................................................................................................................................................................................................. done Filling 98162 nlabel 4089 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041601.label Connecting and filling vertices in path at fillseed 97793 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 97793 nlabel 123076 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041701.label Connecting and filling vertices in path at fillseed 98239 Finding path...................................................................................................................................... done Filling 98239 nlabel 4540 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041801.label Connecting and filling vertices in path at fillseed 100485 Finding path..................................................... done Filling 100485 nlabel 1524 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041901.label Connecting and filling vertices in path at fillseed 101855 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 101855 nlabel 126617 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042001.label Connecting and filling vertices in path at fillseed 100311 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 100311 nlabel 126704 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042101.label Connecting and filling vertices in path at fillseed 95808 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 95808 nlabel 120606 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042201.label Connecting and filling vertices in path at fillseed 101276 Finding path............................................................... done Filling 101276 nlabel 1466 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042301.label Connecting and filling vertices in path at fillseed 103334 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 103334 nlabel 4219 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042401.label Connecting and filling vertices in path at fillseed 99594 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 99594 nlabel 124746 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042501.label Connecting and filling vertices in path at fillseed 100818 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 100818 nlabel 13151 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042601.label Connecting and filling vertices in path at fillseed 102247 Finding path.......................................................................................................................................... done Filling 102247 nlabel 4206 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042701.label Connecting and filling vertices in path at fillseed 101033 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 101033 nlabel 5844 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042801.label Connecting and filling vertices in path at fillseed 98162 Finding path................................................................................................................................................................................................................................................................................................................................................. done Filling 98162 nlabel 4357 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042901.label Connecting and filling vertices in path at fillseed 103750 Finding path............................................................................................................................................................................................................................................................................................................................................................... done Filling 103750 nlabel 8542 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043001.label Connecting and filling vertices in path at fillseed 101275 Finding path............................................. done Filling 101275 nlabel 1632 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043101.label Connecting and filling vertices in path at fillseed 103245 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 103245 nlabel 7596 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043201.label Connecting and filling vertices in path at fillseed 129445 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 129445 nlabel 125986 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043301.label Connecting and filling vertices in path at fillseed 99092 Finding path................................................................................................................................................................................................................................................................................................................................... done Filling 99092 nlabel 7651 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043401.label Connecting and filling vertices in path at fillseed 103549 Finding path................................................................................................................................................... done Filling 103549 nlabel 3244 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043501.label Connecting and filling vertices in path at fillseed 101279 Finding path.......................................................................................... done Filling 101279 nlabel 1637 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043601.label Connecting and filling vertices in path at fillseed 129472 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 129472 nlabel 126555 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043701.label Connecting and filling vertices in path at fillseed 129675 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 129675 nlabel 7293 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043801.label Connecting and filling vertices in path at fillseed 104689 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 104689 nlabel 11235 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043901.label Connecting and filling vertices in path at fillseed 104699 Finding path....................................................................................................................................................................................................................................................................................................... done Filling 104699 nlabel 6148 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044001.label Connecting and filling vertices in path at fillseed 99750 Finding path........................................................................................................................................................................................................................................ done Filling 99750 nlabel 3962 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044101.label Connecting and filling vertices in path at fillseed 98171 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 98171 nlabel 6667 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044201.label Connecting and filling vertices in path at fillseed 105205 Finding path.................................................................................................................................................................................................................................. done Filling 105205 nlabel 7501 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044301.label Connecting and filling vertices in path at fillseed 105663 Finding path........................................................................................................................................................ done Filling 105663 nlabel 2635 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044401.label Connecting and filling vertices in path at fillseed 101280 Finding path................................................................................................................. done Filling 101280 nlabel 2002 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044501.label Connecting and filling vertices in path at fillseed 98162 Finding path.......................................................................................................................................................................................................................................................................................... done Filling 98162 nlabel 4585 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044601.label Connecting and filling vertices in path at fillseed 99877 Finding path......................................................................................................................................................................................................................................................................................... done Filling 99877 nlabel 8330 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044701.label Connecting and filling vertices in path at fillseed 104721 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 104721 nlabel 12054 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044801.label Connecting and filling vertices in path at fillseed 106878 Finding path............................................................................................................................................................................................................................................................................................................................................................................................ done Filling 106878 nlabel 7023 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044901.label Connecting and filling vertices in path at fillseed 107071 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 107071 nlabel 8066 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045001.label Connecting and filling vertices in path at fillseed 98162 Finding path.................................................................................................................................................................................................................................. done Filling 98162 nlabel 4135 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045101.label Connecting and filling vertices in path at fillseed 106662 Finding path........................................................................................................................................................................................................................................... done Filling 106662 nlabel 8504 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045201.label Connecting and filling vertices in path at fillseed 105753 Finding path.................................................................................................................. done Filling 105753 nlabel 3346 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045301.label Connecting and filling vertices in path at fillseed 102735 Finding path................................................................................ done Filling 102735 nlabel 1466 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045401.label Connecting and filling vertices in path at fillseed 99759 Finding path.................................................................................................................................................................................................................................... done Filling 99759 nlabel 4345 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045501.label Connecting and filling vertices in path at fillseed 106357 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 106357 nlabel 123925 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045601.label Connecting and filling vertices in path at fillseed 106114 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 106114 nlabel 9001 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045701.label Connecting and filling vertices in path at fillseed 104279 Finding path.......................................................................... done Filling 104279 nlabel 1523 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045801.label Connecting and filling vertices in path at fillseed 108515 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 108515 nlabel 10565 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045901.label Connecting and filling vertices in path at fillseed 99031 Finding path................................................................................................................................................................................................ done Filling 99031 nlabel 4812 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046001.label Connecting and filling vertices in path at fillseed 106848 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 106848 nlabel 11634 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046101.label Connecting and filling vertices in path at fillseed 107228 Finding path.............................................................................................................................. done Filling 107228 nlabel 2847 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046201.label Connecting and filling vertices in path at fillseed 107744 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 107744 nlabel 9120 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046301.label Connecting and filling vertices in path at fillseed 106379 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 106379 nlabel 125521 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046401.label Connecting and filling vertices in path at fillseed 107360 Finding path............................................................................................................................................................................................................................................ done Filling 107360 nlabel 8414 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046501.label Connecting and filling vertices in path at fillseed 107961 Finding path......................................................................................................................... done Filling 107961 nlabel 3521 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046601.label Connecting and filling vertices in path at fillseed 109684 Finding path.................................................................................................................................................................................................................................................................... done Filling 109684 nlabel 7474 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046701.label Connecting and filling vertices in path at fillseed 103532 Finding path.................................................................................................................................................................................................................... done Filling 103532 nlabel 4729 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046801.label Connecting and filling vertices in path at fillseed 107350 Finding path.......................................................................................................................................................................................................................................................... done Filling 107350 nlabel 8340 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046901.label Connecting and filling vertices in path at fillseed 107573 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 107573 nlabel 9322 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047001.label Connecting and filling vertices in path at fillseed 109617 Finding path......................................................................................................................................................................................................................................................................................................................................................................... done Filling 109617 nlabel 7286 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047101.label Connecting and filling vertices in path at fillseed 103518 Finding path............................................................................................................................................... done Filling 103518 nlabel 2132 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047201.label Connecting and filling vertices in path at fillseed 105727 Finding path................................................................................................................................................................................................................. done Filling 105727 nlabel 5045 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047301.label Connecting and filling vertices in path at fillseed 110226 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 110226 nlabel 8670 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047401.label Connecting and filling vertices in path at fillseed 106757 Finding path............................................................................................................................................................................................................................................................... done Filling 106757 nlabel 7426 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047501.label Connecting and filling vertices in path at fillseed 111484 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 111484 nlabel 9564 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047601.label Connecting and filling vertices in path at fillseed 104300 Finding path............................................................................................................................................................................................................................................................. done Filling 104300 nlabel 4896 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047701.label Connecting and filling vertices in path at fillseed 112371 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 112371 nlabel 7756 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047801.label Connecting and filling vertices in path at fillseed 111845 Finding path............................................................................................................................... done Filling 111845 nlabel 3166 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047901.label Connecting and filling vertices in path at fillseed 111484 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 111484 nlabel 9384 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048001.label Connecting and filling vertices in path at fillseed 130111 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 130111 nlabel 5062 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048101.label Connecting and filling vertices in path at fillseed 112976 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 112976 nlabel 7751 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048201.label Connecting and filling vertices in path at fillseed 106475 Finding path........................................................................................... done Filling 106475 nlabel 1847 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048301.label Connecting and filling vertices in path at fillseed 111525 Finding path............................................................................................................................................................................................................................................................ done Filling 111525 nlabel 8882 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048401.label Connecting and filling vertices in path at fillseed 105727 Finding path...................................................................................................................................................................................................................................... done Filling 105727 nlabel 4922 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048501.label Connecting and filling vertices in path at fillseed 114153 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 114153 nlabel 9716 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048601.label Connecting and filling vertices in path at fillseed 112552 Finding path........................................................................................................................... done Filling 112552 nlabel 4015 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048701.label Connecting and filling vertices in path at fillseed 112173 Finding path................................................................................................................................................................................................................. done Filling 112173 nlabel 8437 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048801.label Connecting and filling vertices in path at fillseed 104300 Finding path....................................................................................................................................................................................................................................................................................................................... done Filling 104300 nlabel 3298 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048901.label Connecting and filling vertices in path at fillseed 108013 Finding path.......................................................................................................................................................................................................................................................................................................................... done Filling 108013 nlabel 5489 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049001.label Connecting and filling vertices in path at fillseed 112511 Finding path........................................................................................................... done Filling 112511 nlabel 3199 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049101.label Connecting and filling vertices in path at fillseed 112835 Finding path...................................................................................................................................................................................................................................................................................................... done Filling 112835 nlabel 9485 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049201.label Connecting and filling vertices in path at fillseed 112455 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 112455 nlabel 8851 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049301.label Connecting and filling vertices in path at fillseed 113566 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 113566 nlabel 3909 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049401.label Connecting and filling vertices in path at fillseed 112709 Finding path................................................................................................................................................................................................................................................................................................................................................... done Filling 112709 nlabel 7874 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049501.label Connecting and filling vertices in path at fillseed 111063 Finding path.............................................................................................................. done Filling 111063 nlabel 2391 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049601.label Connecting and filling vertices in path at fillseed 114210 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 114210 nlabel 9525 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049701.label Connecting and filling vertices in path at fillseed 105727 Finding path................................................................................................................................................................................................................................. done Filling 105727 nlabel 3499 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049801.label Connecting and filling vertices in path at fillseed 114744 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 114744 nlabel 9541 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049901.label Connecting and filling vertices in path at fillseed 108635 Finding path.............................................................................................................. done Filling 108635 nlabel 1327 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050001.label Connecting and filling vertices in path at fillseed 114754 Finding path................................................................................................................................................................................................................................ done Filling 114754 nlabel 8623 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050101.label Connecting and filling vertices in path at fillseed 113066 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 113066 nlabel 9145 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050201.label Connecting and filling vertices in path at fillseed 113596 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 113596 nlabel 6496 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050301.label Connecting and filling vertices in path at fillseed 109511 Finding path............................................................................................................................................................................................................................................................................................................................................................ done Filling 109511 nlabel 8163 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050401.label Connecting and filling vertices in path at fillseed 113357 Finding path................................................................................................................................................................................................................................................................................................................................................................... done Filling 113357 nlabel 8809 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050501.label Connecting and filling vertices in path at fillseed 105689 Finding path......................................................................................................................................................... done Filling 105689 nlabel 2289 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050601.label Connecting and filling vertices in path at fillseed 107310 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 107310 nlabel 4569 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050701.label Connecting and filling vertices in path at fillseed 114718 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 114718 nlabel 9929 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050801.label Connecting and filling vertices in path at fillseed 115128 Finding path................................................................................................................................................. done Filling 115128 nlabel 4160 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050901.label Connecting and filling vertices in path at fillseed 114808 Finding path............................................................................................................................................................................................................................................................................................... done Filling 114808 nlabel 10121 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051001.label Connecting and filling vertices in path at fillseed 111813 Finding path.................................................................................................................................................... done Filling 111813 nlabel 3747 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051101.label Connecting and filling vertices in path at fillseed 108718 Finding path.............................................................................................................................................................................................................................................................. done Filling 108718 nlabel 5410 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051201.label Connecting and filling vertices in path at fillseed 113299 Finding path.............................................................................................................................................................................................................................................................................................................................................. done Filling 113299 nlabel 6952 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051301.label Connecting and filling vertices in path at fillseed 115461 Finding path..................................................................................................................................................................................................................................................... done Filling 115461 nlabel 8538 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051401.label Connecting and filling vertices in path at fillseed 130170 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 130170 nlabel 8571 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051501.label Connecting and filling vertices in path at fillseed 108718 Finding path.............................................................................................................................................................................................................................................. done Filling 108718 nlabel 5374 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051601.label Connecting and filling vertices in path at fillseed 115834 Finding path..................................................................................................................................... done Filling 115834 nlabel 3965 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051701.label Connecting and filling vertices in path at fillseed 114754 Finding path.................................................................................................................................................................................................................... done Filling 114754 nlabel 9138 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051801.label Connecting and filling vertices in path at fillseed 130171 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 130171 nlabel 8446 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051901.label Connecting and filling vertices in path at fillseed 114943 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 114943 nlabel 10743 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052001.label Connecting and filling vertices in path at fillseed 114820 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 114820 nlabel 8232 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052101.label Connecting and filling vertices in path at fillseed 114510 Finding path..................................................................................................................... done Filling 114510 nlabel 4567 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052201.label Connecting and filling vertices in path at fillseed 110419 Finding path...................................................... done Filling 110419 nlabel 1145 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052301.label Connecting and filling vertices in path at fillseed 118350 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 118350 nlabel 9831 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052401.label Connecting and filling vertices in path at fillseed 115611 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 115611 nlabel 9501 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052501.label Connecting and filling vertices in path at fillseed 118305 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 118305 nlabel 11664 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052601.label Connecting and filling vertices in path at fillseed 117606 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 117606 nlabel 7087 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052701.label Connecting and filling vertices in path at fillseed 115959 Finding path................................................................................................................... done Filling 115959 nlabel 5100 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052801.label Connecting and filling vertices in path at fillseed 111069 Finding path...................................................................................................................................... done Filling 111069 nlabel 2411 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052901.label Connecting and filling vertices in path at fillseed 118945 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 118945 nlabel 11508 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053001.label Connecting and filling vertices in path at fillseed 116726 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 116726 nlabel 4509 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053101.label Connecting and filling vertices in path at fillseed 113085 Finding path............................................................. done Filling 113085 nlabel 1447 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053201.label Connecting and filling vertices in path at fillseed 118350 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 118350 nlabel 8758 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053301.label Connecting and filling vertices in path at fillseed 116879 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 116879 nlabel 7038 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053401.label Connecting and filling vertices in path at fillseed 117455 Finding path..................................................................................................................................................................................................................................................................................... done Filling 117455 nlabel 8423 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053501.label Connecting and filling vertices in path at fillseed 121143 Finding path............................................................................................................................................................................................................................................................. done Filling 121143 nlabel 9075 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053601.label Connecting and filling vertices in path at fillseed 116897 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 116897 nlabel 7410 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053701.label Connecting and filling vertices in path at fillseed 118246 Finding path.................................................................................................................................................................................................................................................................................................................................... done Filling 118246 nlabel 8708 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053801.label Connecting and filling vertices in path at fillseed 113099 Finding path......................................................................................................................................... done Filling 113099 nlabel 3880 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053901.label Connecting and filling vertices in path at fillseed 116897 Finding path....................................................................................................................................................................................................................................................... done Filling 116897 nlabel 5580 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054001.label Connecting and filling vertices in path at fillseed 118265 Finding path........................................................................................................................................................................................................................... done Filling 118265 nlabel 8561 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054101.label Connecting and filling vertices in path at fillseed 121087 Finding path...................................................................................................................................................................................................................... done Filling 121087 nlabel 9106 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054201.label Connecting and filling vertices in path at fillseed 115157 Finding path............................................................................................................................................................................................................................................................ done Filling 115157 nlabel 5392 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054301.label Connecting and filling vertices in path at fillseed 118165 Finding path........................................................................................................................................................................................................................................................................................... done Filling 118165 nlabel 8358 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054401.label Connecting and filling vertices in path at fillseed 117886 Finding path....................................................................................................................... done Filling 117886 nlabel 3770 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054501.label Connecting and filling vertices in path at fillseed 117986 Finding path.................................................................................................................................................................................. done Filling 117986 nlabel 5358 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054601.label Connecting and filling vertices in path at fillseed 120249 Finding path........................................................................................... done Filling 120249 nlabel 3961 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054701.label Connecting and filling vertices in path at fillseed 121642 Finding path............................................................................................................................................................................................................................................. done Filling 121642 nlabel 9982 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054801.label Connecting and filling vertices in path at fillseed 118668 Finding path......................................................................................................................................................................................................................................... done Filling 118668 nlabel 5759 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054901.label Connecting and filling vertices in path at fillseed 119746 Finding path............................................................................................................. done Filling 119746 nlabel 3746 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055001.label Connecting and filling vertices in path at fillseed 121641 Finding path................................................................................................................................................................................................................................................. done Filling 121641 nlabel 9854 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055101.label Connecting and filling vertices in path at fillseed 117986 Finding path..................................................................................................................................................................................................... done Filling 117986 nlabel 5697 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055201.label Connecting and filling vertices in path at fillseed 120756 Finding path......................................................................................................... done Filling 120756 nlabel 3320 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055301.label Connecting and filling vertices in path at fillseed 117167 Finding path............................................................................................................................................ done Filling 117167 nlabel 2560 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055401.label Connecting and filling vertices in path at fillseed 122600 Finding path................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 122600 nlabel 7895 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055501.label Connecting and filling vertices in path at fillseed 120225 Finding path............................................................................................................ done Filling 120225 nlabel 2616 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055601.label Connecting and filling vertices in path at fillseed 117876 Finding path.............................................................. done Filling 117876 nlabel 1531 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055701.label Connecting and filling vertices in path at fillseed 115810 Finding path................................................................................................................................................. done Filling 115810 nlabel 4700 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055801.label Connecting and filling vertices in path at fillseed 122486 Finding path............................................................................................................................................................................................................................................................ done Filling 122486 nlabel 4516 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055901.label Connecting and filling vertices in path at fillseed 121281 Finding path....................................................................................................... done Filling 121281 nlabel 2641 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056001.label Connecting and filling vertices in path at fillseed 118564 Finding path...................................................................................................................... done Filling 118564 nlabel 3821 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056101.label Connecting and filling vertices in path at fillseed 123105 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 123105 nlabel 7148 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056201.label Connecting and filling vertices in path at fillseed 123978 Finding path........................................................................................................................................................................................................................ done Filling 123978 nlabel 4264 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056301.label Connecting and filling vertices in path at fillseed 117878 Finding path............................................................ done Filling 117878 nlabel 1348 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056401.label Connecting and filling vertices in path at fillseed 117895 Finding path............................................................................................................................................. done Filling 117895 nlabel 4569 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056501.label Connecting and filling vertices in path at fillseed 119830 Finding path......................................................................................................................................................................................................................................................................................................... done Filling 119830 nlabel 5860 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056601.label Connecting and filling vertices in path at fillseed 124464 Finding path......................................................................................................................................................................................................................................................................................................... done Filling 124464 nlabel 5863 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056701.label Connecting and filling vertices in path at fillseed 117892 Finding path............................................................................................................................... done Filling 117892 nlabel 3855 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056801.label Connecting and filling vertices in path at fillseed 119262 Finding path......................................................................................................................................................................................... done Filling 119262 nlabel 5722 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056901.label Connecting and filling vertices in path at fillseed 120738 Finding path........................................................................................................................ done Filling 120738 nlabel 1910 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057001.label Connecting and filling vertices in path at fillseed 125670 Finding path...................................................................................................................................................................................................................................................... done Filling 125670 nlabel 8159 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057101.label Connecting and filling vertices in path at fillseed 120265 Finding path..................................................................................................................................................................................... done Filling 120265 nlabel 5527 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057201.label Connecting and filling vertices in path at fillseed 123523 Finding path................................................................................................................................................................................................................................................................. done Filling 123523 nlabel 5583 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057301.label Connecting and filling vertices in path at fillseed 125417 Finding path...................................................................................................................................................................................................... done Filling 125417 nlabel 3810 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057401.label Connecting and filling vertices in path at fillseed 117187 Finding path.................................................................................................................................................... done Filling 117187 nlabel 5018 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057501.label Connecting and filling vertices in path at fillseed 123534 Finding path...................................................................................................................................................................................................................................................................... done Filling 123534 nlabel 5109 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057601.label Connecting and filling vertices in path at fillseed 125861 Finding path.......................................................................................................... done Filling 125861 nlabel 4058 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057701.label Connecting and filling vertices in path at fillseed 117895 Finding path...................................................................................................................................... done Filling 117895 nlabel 5119 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057801.label Connecting and filling vertices in path at fillseed 123523 Finding path......................................................................................................................................................................................................................................................................... done Filling 123523 nlabel 4342 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057901.label Connecting and filling vertices in path at fillseed 118553 Finding path........................................................... done Filling 118553 nlabel 1275 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058001.label Connecting and filling vertices in path at fillseed 125966 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 125966 nlabel 8405 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058101.label Connecting and filling vertices in path at fillseed 124859 Finding path....................................................................................................................... done Filling 124859 nlabel 2459 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058201.label Connecting and filling vertices in path at fillseed 118561 Finding path............................................... done Filling 118561 nlabel 1594 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058301.label Connecting and filling vertices in path at fillseed 125977 Finding path............................................................................................................................................................................................................................................................................................................................................................................................ done Filling 125977 nlabel 7062 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058401.label Connecting and filling vertices in path at fillseed 126650 Finding path.................................................................................................................................................... done Filling 126650 nlabel 3919 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058501.label Connecting and filling vertices in path at fillseed 122847 Finding path......................................................................................................................................................................................... done Filling 122847 nlabel 3336 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058601.label Connecting and filling vertices in path at fillseed 124480 Finding path................................................................................................................................................................................................................................................................................................................. done Filling 124480 nlabel 5205 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058701.label Connecting and filling vertices in path at fillseed 127103 Finding path....................................................................................................................................................................................................................................................................................................................................................................... done Filling 127103 nlabel 5449 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058801.label Connecting and filling vertices in path at fillseed 120783 Finding path........................................................................................................................................................... done Filling 120783 nlabel 4757 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058901.label Connecting and filling vertices in path at fillseed 120742 Finding path....................................................................................................................................... done Filling 120742 nlabel 1690 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059001.label Connecting and filling vertices in path at fillseed 127071 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................. done Filling 127071 nlabel 8370 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059101.label Connecting and filling vertices in path at fillseed 125517 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 125517 nlabel 7739 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059201.label Connecting and filling vertices in path at fillseed 120743 Finding path................................................. done Filling 120743 nlabel 1251 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059301.label Connecting and filling vertices in path at fillseed 127031 Finding path............................................................................................................................................................................................................................................................................................................................................................................... done Filling 127031 nlabel 6293 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059401.label Connecting and filling vertices in path at fillseed 125949 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 125949 nlabel 3989 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059501.label Connecting and filling vertices in path at fillseed 127950 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 127950 nlabel 5916 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059601.label Connecting and filling vertices in path at fillseed 123412 Finding path................................................................................................................................................................................... done Filling 123412 nlabel 4665 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059701.label Connecting and filling vertices in path at fillseed 125502 Finding path......................................................................................................................................................................................................................... done Filling 125502 nlabel 3300 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059801.label Connecting and filling vertices in path at fillseed 127679 Finding path............................................................................................................................................................................................................................................................................................................................................................................... done Filling 127679 nlabel 5995 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059901.label Connecting and filling vertices in path at fillseed 122896 Finding path......................................................................................................................................................................................... done Filling 122896 nlabel 4152 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060001.label Connecting and filling vertices in path at fillseed 127530 Finding path..................................................................................................................................................................................................................................... done Filling 127530 nlabel 3130 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060101.label Connecting and filling vertices in path at fillseed 123362 Finding path................................................................................................................................................................ done Filling 123362 nlabel 1945 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060201.label Connecting and filling vertices in path at fillseed 125962 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 125962 nlabel 2692 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060301.label Connecting and filling vertices in path at fillseed 127897 Finding path................................................................................................................................................................................................................................................ done Filling 127897 nlabel 127990 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060401.label Connecting and filling vertices in path at fillseed 127917 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 127917 nlabel 4286 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060501.label Connecting and filling vertices in path at fillseed 123399 Finding path........................................................................................................................................................................ done Filling 123399 nlabel 3993 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060601.label Connecting and filling vertices in path at fillseed 128258 Finding path................................................................................................................................................................................................................. done Filling 128258 nlabel 2710 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060701.label Connecting and filling vertices in path at fillseed 127882 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................. done Filling 127882 nlabel 3573 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060801.label Connecting and filling vertices in path at fillseed 125501 Finding path............................................................................................................................................................................................ done Filling 125501 nlabel 2963 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060901.label Connecting and filling vertices in path at fillseed 125348 Finding path....................................................................................... done Filling 125348 nlabel 1160 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061001.label Connecting and filling vertices in path at fillseed 124889 Finding path.................................................................................................................................................. done Filling 124889 nlabel 3190 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061101.label Connecting and filling vertices in path at fillseed 126972 Finding path................................................................................................................................................................. done Filling 126972 nlabel 3553 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061201.label Connecting and filling vertices in path at fillseed 125827 Finding path.............................................................. done Filling 125827 nlabel 1440 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061301.label Connecting and filling vertices in path at fillseed 125832 Finding path.......................................................... done Filling 125832 nlabel 1482 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061401.label Connecting and filling vertices in path at fillseed 126983 Finding path................................................................................................................................................................................................................................................................................................................. done Filling 126983 nlabel 2903 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061501.label Connecting and filling vertices in path at fillseed 128420 Finding path................................................................................................................................................................................................................................................................ done Filling 128420 nlabel 128451 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061601.label Connecting and filling vertices in path at fillseed 124898 Finding path............................................................................................................................................ done Filling 124898 nlabel 3224 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061701.label Connecting and filling vertices in path at fillseed 128259 Finding path........................................................................................................................................................................................................................... done Filling 128259 nlabel 2497 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061801.label Connecting and filling vertices in path at fillseed 126266 Finding path................................................................................................................................................................................................ done Filling 126266 nlabel 2885 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061901.label Connecting and filling vertices in path at fillseed 126972 Finding path............................................................................................................................................................ done Filling 126972 nlabel 2944 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062001.label Connecting and filling vertices in path at fillseed 128406 Finding path.......................................................................................................................................................................................................................................................................................................... done Filling 128406 nlabel 2201 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062101.label Connecting and filling vertices in path at fillseed 127552 Finding path............................................................................................................................... done Filling 127552 nlabel 3074 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062201.label Connecting and filling vertices in path at fillseed 126636 Finding path..................................................................................................... done Filling 126636 nlabel 1818 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062301.label Connecting and filling vertices in path at fillseed 128265 Finding path........................................................................................................................................................................................................................................................................ done Filling 128265 nlabel 1929 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062401.label Connecting and filling vertices in path at fillseed 127837 Finding path........................................................................................ done Filling 127837 nlabel 1800 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062501.label Connecting and filling vertices in path at fillseed 126631 Finding path................................................................................ done Filling 126631 nlabel 1812 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062601.label Connecting and filling vertices in path at fillseed 128079 Finding path................................................................................................................................................. done Filling 128079 nlabel 2406 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062701.label Connecting and filling vertices in path at fillseed 127526 Finding path................................................................................. done Filling 127526 nlabel 1417 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062801.label Connecting and filling vertices in path at fillseed 126636 Finding path...................................................................................................................................................................................... done Filling 126636 nlabel 2325 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062901.label Connecting and filling vertices in path at fillseed 127848 Finding path....................................................................................................................................................... done Filling 127848 nlabel 2754 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.063001.label ================= compute_lgi('lh.pial','lh.pial-outer-smoothed','/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc',100,25,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial'); exit ================= 2016-01-22 15:06:19.169 MATLAB_maci64[34343:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> loading datas ... FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.19 sec) FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.05 sec) preparing outer mesh structure ... face 5000 / 126048 face 10000 / 126048 face 15000 / 126048 face 20000 / 126048 face 25000 / 126048 face 30000 / 126048 face 35000 / 126048 face 40000 / 126048 face 45000 / 126048 face 50000 / 126048 face 55000 / 126048 face 60000 / 126048 face 65000 / 126048 face 70000 / 126048 face 75000 / 126048 face 80000 / 126048 face 85000 / 126048 face 90000 / 126048 face 95000 / 126048 face 100000 / 126048 face 105000 / 126048 face 110000 / 126048 face 115000 / 126048 face 120000 / 126048 face 125000 / 126048 reading normals info ... mesh_outer = vertices: [63026x3 double] faces: [126048x3 double] facesOfVertex: [63026x1 struct] vertexNormal: [63026x3 double] preparing pial mesh structure ... face 5000 / 260534 face 10000 / 260534 face 15000 / 260534 face 20000 / 260534 face 25000 / 260534 face 30000 / 260534 face 35000 / 260534 face 40000 / 260534 face 45000 / 260534 face 50000 / 260534 face 55000 / 260534 face 60000 / 260534 face 65000 / 260534 face 70000 / 260534 face 75000 / 260534 face 80000 / 260534 face 85000 / 260534 face 90000 / 260534 face 95000 / 260534 face 100000 / 260534 face 105000 / 260534 face 110000 / 260534 face 115000 / 260534 face 120000 / 260534 face 125000 / 260534 face 130000 / 260534 face 135000 / 260534 face 140000 / 260534 face 145000 / 260534 face 150000 / 260534 face 155000 / 260534 face 160000 / 260534 face 165000 / 260534 face 170000 / 260534 face 175000 / 260534 face 180000 / 260534 face 185000 / 260534 face 190000 / 260534 face 195000 / 260534 face 200000 / 260534 face 205000 / 260534 face 210000 / 260534 face 215000 / 260534 face 220000 / 260534 face 225000 / 260534 face 230000 / 260534 face 235000 / 260534 face 240000 / 260534 face 245000 / 260534 face 250000 / 260534 face 255000 / 260534 face 260000 / 260534 mesh_total = vertices: [130269x3 double] faces: [260534x3 double] facesOfVertex: [130269x1 struct] ...searching for mesh edges...done (206.41 sec). loading outer area information... lGI for vertex number 1 of the outer mesh is 3.3338 ratio saved at 1 lGI for vertex number 101 of the outer mesh is 3.278 lGI for vertex number 201 of the outer mesh is 4.8672 lGI for vertex number 301 of the outer mesh is 4.7987 lGI for vertex number 401 of the outer mesh is 3.006 lGI for vertex number 501 of the outer mesh is 2.9033 lGI for vertex number 601 of the outer mesh is 4.4632 lGI for vertex number 701 of the outer mesh is 3.4515 lGI for vertex number 801 of the outer mesh is 4.5538 lGI for vertex number 901 of the outer mesh is 2.5336 lGI for vertex number 1001 of the outer mesh is 4.5215 lGI for vertex number 1101 of the outer mesh is 2.1202 lGI for vertex number 1201 of the outer mesh is 2.7294 lGI for vertex number 1301 of the outer mesh is 3.134 lGI for vertex number 1401 of the outer mesh is 2.9425 lGI for vertex number 1501 of the outer mesh is 4.8756 lGI for vertex number 1601 of the outer mesh is 2.5597 lGI for vertex number 1701 of the outer mesh is 3.0584 lGI for vertex number 1801 of the outer mesh is 2.7153 lGI for vertex number 1901 of the outer mesh is 5.0141 lGI for vertex number 2001 of the outer mesh is 2.4731 lGI for vertex number 2101 of the outer mesh is 5.2122 lGI for vertex number 2201 of the outer mesh is 1.7094 lGI for vertex number 2301 of the outer mesh is 2.6726 lGI for vertex number 2401 of the outer mesh is 3.1909 lGI for vertex number 2501 of the outer mesh is 2.7468 lGI for vertex number 2601 of the outer mesh is 1.724 lGI for vertex number 2701 of the outer mesh is 2.237 lGI for vertex number 2801 of the outer mesh is 2.7942 lGI for vertex number 2901 of the outer mesh is 4.5717 lGI for vertex number 3001 of the outer mesh is 4.8516 lGI for vertex number 3101 of the outer mesh is 1.464 lGI for vertex number 3201 of the outer mesh is 4.4893 lGI for vertex number 3301 of the outer mesh is 3.0717 lGI for vertex number 3401 of the outer mesh is 2.4644 lGI for vertex number 3501 of the outer mesh is 1.4432 lGI for vertex number 3601 of the outer mesh is 2.3049 lGI for vertex number 3701 of the outer mesh is 2.6214 lGI for vertex number 3801 of the outer mesh is 3.3216 lGI for vertex number 3901 of the outer mesh is 2.4849 lGI for vertex number 4001 of the outer mesh is 1.3331 lGI for vertex number 4101 of the outer mesh is 5.0201 lGI for vertex number 4201 of the outer mesh is 3.7003 lGI for vertex number 4301 of the outer mesh is 3.3699 lGI for vertex number 4401 of the outer mesh is 4.7613 lGI for vertex number 4501 of the outer mesh is 1.4628 lGI for vertex number 4601 of the outer mesh is 2.5333 lGI for vertex number 4701 of the outer mesh is 4.7036 lGI for vertex number 4801 of the outer mesh is 1.2909 lGI for vertex number 4901 of the outer mesh is 1.1901 lGI for vertex number 5001 of the outer mesh is 1.3466 lGI for vertex number 5101 of the outer mesh is 2.6679 lGI for vertex number 5201 of the outer mesh is 3.5196 lGI for vertex number 5301 of the outer mesh is 2.9462 lGI for vertex number 5401 of the outer mesh is 1.4086 lGI for vertex number 5501 of the outer mesh is 2.3021 lGI for vertex number 5601 of the outer mesh is 4.1006 lGI for vertex number 5701 of the outer mesh is 2.3191 lGI for vertex number 5801 of the outer mesh is 1.1971 lGI for vertex number 5901 of the outer mesh is 5.0137 lGI for vertex number 6001 of the outer mesh is 2.7951 lGI for vertex number 6101 of the outer mesh is 3.2283 lGI for vertex number 6201 of the outer mesh is 1.1641 lGI for vertex number 6301 of the outer mesh is 1.2543 lGI for vertex number 6401 of the outer mesh is 5.9084 lGI for vertex number 6501 of the outer mesh is 3.1709 lGI for vertex number 6601 of the outer mesh is 2.0691 lGI for vertex number 6701 of the outer mesh is 4.949 lGI for vertex number 6801 of the outer mesh is 2.3428 lGI for vertex number 6901 of the outer mesh is 3.8613 lGI for vertex number 7001 of the outer mesh is 1.3504 lGI for vertex number 7101 of the outer mesh is 4.1688 lGI for vertex number 7201 of the outer mesh is 1.2399 lGI for vertex number 7301 of the outer mesh is 2.5704 lGI for vertex number 7401 of the outer mesh is 3.2496 lGI for vertex number 7501 of the outer mesh is 2.4711 lGI for vertex number 7601 of the outer mesh is 4.6347 lGI for vertex number 7701 of the outer mesh is 5.1236 lGI for vertex number 7801 of the outer mesh is 2.627 lGI for vertex number 7901 of the outer mesh is 2.8261 lGI for vertex number 8001 of the outer mesh is 5.1236 lGI for vertex number 8101 of the outer mesh is 2.6798 lGI for vertex number 8201 of the outer mesh is 3.7164 lGI for vertex number 8301 of the outer mesh is 1.2262 lGI for vertex number 8401 of the outer mesh is 5.1419 lGI for vertex number 8501 of the outer mesh is 7.1136 lGI for vertex number 8601 of the outer mesh is 2.588 lGI for vertex number 8701 of the outer mesh is 2.3467 lGI for vertex number 8801 of the outer mesh is 1.2255 lGI for vertex number 8901 of the outer mesh is 2.0167 ... remeasuring lGI value for vertex iV = 9001. It may take a few minutes. WARNING -- Problem for vertex iV = 9001, lGI value is aberrantly high (lGI=31.7692)... ...lGI computation will be stopped. This may be caused by topological defects, check mris_euler_number on the pial surface. ERROR: compute_lgi did not create output file '/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial_lgi.asc'! Darwin MacBook-Pro-di-Marco.local 13.3.0 Darwin Kernel Version 13.3.0: Tue Jun 3 21:27:35 PDT 2014; root:xnu-2422.110.17~1/RELEASE_X86_64 x86_64 recon-all -s T40_OM_Post exited with ERRORS at Fri Jan 22 15:17:18 EET 2016 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting \n\n New invocation of recon-all \n\n Wed Mar 16 10:29:02 EET 2016 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post /Applications/freesurfer/bin/recon-all -s T40_OM_Post -localGI subjid T40_OM_Post setenv SUBJECTS_DIR /Users/marco/Documents/T1s/pipelineT1/subjects FREESURFER_HOME /Applications/freesurfer Actual FREESURFER_HOME /Applications/freesurfer build-stamp.txt: freesurfer-Darwin-lion-stable-pub-v5.3.0 Darwin MacBook-Pro-di-Marco.local 13.3.0 Darwin Kernel Version 13.3.0: Tue Jun 3 21:27:35 PDT 2014; root:xnu-2422.110.17~1/RELEASE_X86_64 x86_64 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 709 PhysMem: 7153M used (1338M wired), 50M unused. ######################################## program versions used $Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 nicks Exp $ $Id: mri_motion_correct.fsl,v 1.14 2011/03/02 20:16:39 nicks Exp $ mri_convert -all-info ProgramName: mri_convert ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:03-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 FLIRT version 5.5 $Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks Exp $ mri_convert --version stable5 ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:04-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 Program nu_correct, built from: Package MNI N3, version 1.10, compiled by nicks@aspasia.local (i686-apple-darwin10.2.0) on 2010-02-26 at 14:19:30 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:05-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:05-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_normalize.c,v 1.73.2.1 2012/10/17 19:11:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:05-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_watershed.cpp,v 1.96.2.1 2011/11/08 22:18:44 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:05-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:06-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_segment.c,v 1.40 2011/03/02 00:04:24 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_label2label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:06-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_label2label.c,v 1.40.2.2 2013/04/02 16:26:15 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:06-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_em_register.c,v 1.84.2.3 2013/02/09 00:49:26 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:07-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_normalize.c,v 1.52.2.2 2012/10/17 19:11:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:07-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_register.c,v 1.78.2.3 2013/02/09 00:42:20 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:07-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_ca_label.c,v 1.96.2.1 2012/08/28 22:11:20 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:07-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_pretess.c,v 1.20 2011/03/02 00:04:23 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:07-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_fill.c,v 1.118 2011/03/16 21:23:49 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:08-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_concatenate_lta ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:08-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_concatenate_lta.c,v 1.10 2011/03/16 21:23:48 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:08-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:08-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_smooth.c,v 1.28 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:08-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_inflate.c,v 1.43 2011/03/02 00:04:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:09-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:09-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:09-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:09-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:09-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:10-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_euler_number.c,v 1.8.2.2 2013/01/14 22:40:07 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:10-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:10-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:10-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_volmask.cpp,v 1.25 2011/03/02 00:04:34 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:11-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_anatomical_stats.c,v 1.72 2011/03/02 00:04:26 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:11-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mrisp_paint.c,v 1.11 2011/03/02 00:04:35 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:11-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_curvature_stats.c,v 1.64 2011/03/02 00:04:30 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:11-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mris_calc.c,v 1.37.2.8 2013/01/28 17:05:17 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ ProgramName: mri_robust_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:12-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:12-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:12-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:12-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_or.c,v 1.3 2011/03/02 00:04:13 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:12-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/16-08:29:13-GMT BuildTimeStamp: May 14 2013 09:12:01 CVS: $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ User: marco Machine: MacBook-Pro-di-Marco.local Platform: Darwin PlatformVersion: 13.3.0 CompilerName: GCC CompilerVersion: 40200 ####################################### GCADIR /Applications/freesurfer/average GCA RB_all_2008-03-26.gca GCASkull RB_all_withskull_2008-03-26.gca AvgCurvTif average.curvature.filled.buckner40.tif GCSDIR /Applications/freesurfer/average GCS curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ####################################### INFO: current FREESURFER_HOME does not match that of previous processing. Current: /Applications/freesurfer Previous: /cdrom/Marco/freesurfer /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf #-------------------------------------------- #@# Local Gyrification Index lh Wed Mar 16 10:29:14 EET 2016 \n mris_compute_lgi --i lh.pial \n ================= rm -Rf /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial ================= ================= mkdir -p /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial ================= ================= mris_fill -c -r 1 lh.pial /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz ================= reading surface from lh.pial... writing filled volume to /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz... conforming output volume setting resolution for intermediate calculations to 1.0000 ================= make_outer_surface('/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz',15,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer'); exit ================= 2016-03-16 10:29:28.366 MATLAB_maci64[3686:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> reading filled volume... closing volume... morphological closing done. writing outer surface... ================= mris_extract_main_component /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-main ================= counting number of connected components... 63026 voxel in cpt #1: X=2 [v=63026,e=189072,f=126048] located at (-23.041338, -12.141769, 24.493813) For the whole surface: X=2 [v=63026,e=189072,f=126048] One single component has been found nothing to do done ================= mris_smooth -nw -n 30 /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-main ./lh.pial-outer-smoothed ================= smoothing for 30 iterations smoothing surface tessellation for 30 iterations... smoothing complete - recomputing first and second fundamental forms... ================= mris_euler_number ./lh.pial-outer-smoothed ================= euler # = v-e+f = 2g-2: 63026 - 189072 + 126048 = 2 --> 0 holes F =2V-4: 126048 = 126052-4 (0) 2E=3F: 378144 = 378144 (0) total defect index = 0 ================= mris_convert -n lh.pial-outer-smoothed /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc ================= ================= find_corresponding_center_FSformat('lh.pial','lh.pial-outer-smoothed',100,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial','/tmp/mrc_3671_.m'); exit ================= 2016-03-16 10:30:07.325 MATLAB_maci64[3750:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.14 sec) FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) deltaT = 4.3500 ================= make_roi_paths('lh.pial','lh.pial-outer-smoothed',25,100,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial','/tmp/mrp_3671_.m'); exit ================= 2016-03-16 10:30:14.088 MATLAB_maci64[3804:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> loading datas ... FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.02 sec) FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) preparing outer mesh structure ... face 5000 / 126048 face 10000 / 126048 face 15000 / 126048 face 20000 / 126048 face 25000 / 126048 face 30000 / 126048 face 35000 / 126048 face 40000 / 126048 face 45000 / 126048 face 50000 / 126048 face 55000 / 126048 face 60000 / 126048 face 65000 / 126048 face 70000 / 126048 face 75000 / 126048 face 80000 / 126048 face 85000 / 126048 face 90000 / 126048 face 95000 / 126048 face 100000 / 126048 face 105000 / 126048 face 110000 / 126048 face 115000 / 126048 face 120000 / 126048 face 125000 / 126048 mesh_outer = vertices: [63026x3 double] faces: [126048x3 double] facesOfVertex: [63026x1 struct] preparing pial mesh structure ... ...searching for mesh edges...done (192.55 sec). ... creating path file for vertex 1 / 63026 area file for outer ROIs saved at 1 ... creating path file for vertex 101 / 63026 ... creating path file for vertex 201 / 63026 ... creating path file for vertex 301 / 63026 ... creating path file for vertex 401 / 63026 ... creating path file for vertex 501 / 63026 ... creating path file for vertex 601 / 63026 ... creating path file for vertex 701 / 63026 ... creating path file for vertex 801 / 63026 ... creating path file for vertex 901 / 63026 ... creating path file for vertex 1001 / 63026 ... creating path file for vertex 1101 / 63026 ... creating path file for vertex 1201 / 63026 ... creating path file for vertex 1301 / 63026 ... creating path file for vertex 1401 / 63026 ... creating path file for vertex 1501 / 63026 ... creating path file for vertex 1601 / 63026 ... creating path file for vertex 1701 / 63026 ... creating path file for vertex 1801 / 63026 ... creating path file for vertex 1901 / 63026 ... creating path file for vertex 2001 / 63026 ... creating path file for vertex 2101 / 63026 ... creating path file for vertex 2201 / 63026 ... creating path file for vertex 2301 / 63026 ... creating path file for vertex 2401 / 63026 ... creating path file for vertex 2501 / 63026 ... creating path file for vertex 2601 / 63026 ... creating path file for vertex 2701 / 63026 ... creating path file for vertex 2801 / 63026 ... creating path file for vertex 2901 / 63026 ... creating path file for vertex 3001 / 63026 ... creating path file for vertex 3101 / 63026 ... creating path file for vertex 3201 / 63026 ... creating path file for vertex 3301 / 63026 ... creating path file for vertex 3401 / 63026 ... creating path file for vertex 3501 / 63026 ... creating path file for vertex 3601 / 63026 ... creating path file for vertex 3701 / 63026 ... creating path file for vertex 3801 / 63026 ... creating path file for vertex 3901 / 63026 ... creating path file for vertex 4001 / 63026 ... creating path file for vertex 4101 / 63026 ... creating path file for vertex 4201 / 63026 ... creating path file for vertex 4301 / 63026 ... creating path file for vertex 4401 / 63026 ... creating path file for vertex 4501 / 63026 ... creating path file for vertex 4601 / 63026 ... creating path file for vertex 4701 / 63026 ... creating path file for vertex 4801 / 63026 ... creating path file for vertex 4901 / 63026 ... creating path file for vertex 5001 / 63026 area file for outer ROIs saved at 5001 ... creating path file for vertex 5101 / 63026 ... creating path file for vertex 5201 / 63026 ... creating path file for vertex 5301 / 63026 ... creating path file for vertex 5401 / 63026 ... creating path file for vertex 5501 / 63026 ... creating path file for vertex 5601 / 63026 ... creating path file for vertex 5701 / 63026 ... creating path file for vertex 5801 / 63026 ... creating path file for vertex 5901 / 63026 ... creating path file for vertex 6001 / 63026 ... creating path file for vertex 6101 / 63026 ... creating path file for vertex 6201 / 63026 ... creating path file for vertex 6301 / 63026 ... creating path file for vertex 6401 / 63026 ... creating path file for vertex 6501 / 63026 ... creating path file for vertex 6601 / 63026 ... creating path file for vertex 6701 / 63026 ... creating path file for vertex 6801 / 63026 ... creating path file for vertex 6901 / 63026 ... creating path file for vertex 7001 / 63026 ... creating path file for vertex 7101 / 63026 ... creating path file for vertex 7201 / 63026 ... creating path file for vertex 7301 / 63026 ... creating path file for vertex 7401 / 63026 ... creating path file for vertex 7501 / 63026 ... creating path file for vertex 7601 / 63026 ... creating path file for vertex 7701 / 63026 ... creating path file for vertex 7801 / 63026 ... creating path file for vertex 7901 / 63026 ... creating path file for vertex 8001 / 63026 ... creating path file for vertex 8101 / 63026 ... creating path file for vertex 8201 / 63026 ... creating path file for vertex 8301 / 63026 ... creating path file for vertex 8401 / 63026 ... creating path file for vertex 8501 / 63026 ... creating path file for vertex 8601 / 63026 ... creating path file for vertex 8701 / 63026 ... creating path file for vertex 8801 / 63026 ... creating path file for vertex 8901 / 63026 ... creating path file for vertex 9001 / 63026 ... creating path file for vertex 9101 / 63026 ... creating path file for vertex 9201 / 63026 ... creating path file for vertex 9301 / 63026 ... creating path file for vertex 9401 / 63026 ... creating path file for vertex 9501 / 63026 ... creating path file for vertex 9601 / 63026 ... creating path file for vertex 9701 / 63026 ... creating path file for vertex 9801 / 63026 ... creating path file for vertex 9901 / 63026 ... creating path file for vertex 10001 / 63026 area file for outer ROIs saved at 10001 ... creating path file for vertex 10101 / 63026 ... creating path file for vertex 10201 / 63026 ... creating path file for vertex 10301 / 63026 ... creating path file for vertex 10401 / 63026 ... creating path file for vertex 10501 / 63026 ... creating path file for vertex 10601 / 63026 ... creating path file for vertex 10701 / 63026 ... creating path file for vertex 10801 / 63026 ... creating path file for vertex 10901 / 63026 ... creating path file for vertex 11001 / 63026 ... creating path file for vertex 11101 / 63026 ... creating path file for vertex 11201 / 63026 ... creating path file for vertex 11301 / 63026 ... creating path file for vertex 11401 / 63026 ... creating path file for vertex 11501 / 63026 ... creating path file for vertex 11601 / 63026 ... creating path file for vertex 11701 / 63026 ... creating path file for vertex 11801 / 63026 ... creating path file for vertex 11901 / 63026 ... creating path file for vertex 12001 / 63026 ... creating path file for vertex 12101 / 63026 ... creating path file for vertex 12201 / 63026 ... creating path file for vertex 12301 / 63026 ... creating path file for vertex 12401 / 63026 ... creating path file for vertex 12501 / 63026 ... creating path file for vertex 12601 / 63026 ... creating path file for vertex 12701 / 63026 ... creating path file for vertex 12801 / 63026 ... creating path file for vertex 12901 / 63026 ... creating path file for vertex 13001 / 63026 ... creating path file for vertex 13101 / 63026 ... creating path file for vertex 13201 / 63026 ... creating path file for vertex 13301 / 63026 ... creating path file for vertex 13401 / 63026 ... creating path file for vertex 13501 / 63026 ... creating path file for vertex 13601 / 63026 ... creating path file for vertex 13701 / 63026 ... creating path file for vertex 13801 / 63026 ... creating path file for vertex 13901 / 63026 ... creating path file for vertex 14001 / 63026 ... creating path file for vertex 14101 / 63026 ... creating path file for vertex 14201 / 63026 ... creating path file for vertex 14301 / 63026 ... creating path file for vertex 14401 / 63026 ... creating path file for vertex 14501 / 63026 ... creating path file for vertex 14601 / 63026 ... creating path file for vertex 14701 / 63026 ... creating path file for vertex 14801 / 63026 ... creating path file for vertex 14901 / 63026 ... creating path file for vertex 15001 / 63026 area file for outer ROIs saved at 15001 ... creating path file for vertex 15101 / 63026 ... creating path file for vertex 15201 / 63026 ... creating path file for vertex 15301 / 63026 ... creating path file for vertex 15401 / 63026 ... creating path file for vertex 15501 / 63026 ... creating path file for vertex 15601 / 63026 ... creating path file for vertex 15701 / 63026 ... creating path file for vertex 15801 / 63026 ... creating path file for vertex 15901 / 63026 ... creating path file for vertex 16001 / 63026 ... creating path file for vertex 16101 / 63026 ... creating path file for vertex 16201 / 63026 ... creating path file for vertex 16301 / 63026 ... creating path file for vertex 16401 / 63026 ... creating path file for vertex 16501 / 63026 ... creating path file for vertex 16601 / 63026 ... creating path file for vertex 16701 / 63026 ... creating path file for vertex 16801 / 63026 ... creating path file for vertex 16901 / 63026 ... creating path file for vertex 17001 / 63026 ... creating path file for vertex 17101 / 63026 ... creating path file for vertex 17201 / 63026 ... creating path file for vertex 17301 / 63026 ... creating path file for vertex 17401 / 63026 ... creating path file for vertex 17501 / 63026 ... creating path file for vertex 17601 / 63026 ... creating path file for vertex 17701 / 63026 ... creating path file for vertex 17801 / 63026 ... creating path file for vertex 17901 / 63026 ... creating path file for vertex 18001 / 63026 ... creating path file for vertex 18101 / 63026 ... creating path file for vertex 18201 / 63026 ... creating path file for vertex 18301 / 63026 ... creating path file for vertex 18401 / 63026 ... creating path file for vertex 18501 / 63026 ... creating path file for vertex 18601 / 63026 ... creating path file for vertex 18701 / 63026 ... creating path file for vertex 18801 / 63026 ... creating path file for vertex 18901 / 63026 ... creating path file for vertex 19001 / 63026 ... creating path file for vertex 19101 / 63026 ... creating path file for vertex 19201 / 63026 ... creating path file for vertex 19301 / 63026 ... creating path file for vertex 19401 / 63026 ... creating path file for vertex 19501 / 63026 ... creating path file for vertex 19601 / 63026 ... creating path file for vertex 19701 / 63026 non geodesic regions removed from the patch ... creating path file for vertex 19801 / 63026 ... creating path file for vertex 19901 / 63026 ... creating path file for vertex 20001 / 63026 area file for outer ROIs saved at 20001 ... creating path file for vertex 20101 / 63026 ... creating path file for vertex 20201 / 63026 ... creating path file for vertex 20301 / 63026 ... creating path file for vertex 20401 / 63026 ... creating path file for vertex 20501 / 63026 ... creating path file for vertex 20601 / 63026 ... creating path file for vertex 20701 / 63026 ... creating path file for vertex 20801 / 63026 ... creating path file for vertex 20901 / 63026 ... creating path file for vertex 21001 / 63026 ... creating path file for vertex 21101 / 63026 ... creating path file for vertex 21201 / 63026 ... creating path file for vertex 21301 / 63026 ... creating path file for vertex 21401 / 63026 ... creating path file for vertex 21501 / 63026 ... creating path file for vertex 21601 / 63026 ... creating path file for vertex 21701 / 63026 ... creating path file for vertex 21801 / 63026 ... creating path file for vertex 21901 / 63026 ... creating path file for vertex 22001 / 63026 ... creating path file for vertex 22101 / 63026 ... creating path file for vertex 22201 / 63026 ... creating path file for vertex 22301 / 63026 ... creating path file for vertex 22401 / 63026 ... creating path file for vertex 22501 / 63026 ... creating path file for vertex 22601 / 63026 ... creating path file for vertex 22701 / 63026 ... creating path file for vertex 22801 / 63026 ... creating path file for vertex 22901 / 63026 ... creating path file for vertex 23001 / 63026 ... creating path file for vertex 23101 / 63026 ... creating path file for vertex 23201 / 63026 ... creating path file for vertex 23301 / 63026 ... creating path file for vertex 23401 / 63026 ... creating path file for vertex 23501 / 63026 ... creating path file for vertex 23601 / 63026 ... creating path file for vertex 23701 / 63026 ... creating path file for vertex 23801 / 63026 ... creating path file for vertex 23901 / 63026 ... creating path file for vertex 24001 / 63026 ... creating path file for vertex 24101 / 63026 ... creating path file for vertex 24201 / 63026 ... creating path file for vertex 24301 / 63026 ... creating path file for vertex 24401 / 63026 ... creating path file for vertex 24501 / 63026 ... creating path file for vertex 24601 / 63026 ... creating path file for vertex 24701 / 63026 ... creating path file for vertex 24801 / 63026 ... creating path file for vertex 24901 / 63026 ... creating path file for vertex 25001 / 63026 area file for outer ROIs saved at 25001 ... creating path file for vertex 25101 / 63026 ... creating path file for vertex 25201 / 63026 ... creating path file for vertex 25301 / 63026 ... creating path file for vertex 25401 / 63026 ... creating path file for vertex 25501 / 63026 ... creating path file for vertex 25601 / 63026 ... creating path file for vertex 25701 / 63026 ... creating path file for vertex 25801 / 63026 ... creating path file for vertex 25901 / 63026 ... creating path file for vertex 26001 / 63026 ... creating path file for vertex 26101 / 63026 ... creating path file for vertex 26201 / 63026 ... creating path file for vertex 26301 / 63026 ... creating path file for vertex 26401 / 63026 ... creating path file for vertex 26501 / 63026 ... creating path file for vertex 26601 / 63026 ... creating path file for vertex 26701 / 63026 ... creating path file for vertex 26801 / 63026 ... creating path file for vertex 26901 / 63026 ... creating path file for vertex 27001 / 63026 ... creating path file for vertex 27101 / 63026 ... creating path file for vertex 27201 / 63026 ... creating path file for vertex 27301 / 63026 ... creating path file for vertex 27401 / 63026 ... creating path file for vertex 27501 / 63026 ... creating path file for vertex 27601 / 63026 ... creating path file for vertex 27701 / 63026 ... creating path file for vertex 27801 / 63026 ... creating path file for vertex 27901 / 63026 ... creating path file for vertex 28001 / 63026 ... creating path file for vertex 28101 / 63026 ... creating path file for vertex 28201 / 63026 ... creating path file for vertex 28301 / 63026 ... creating path file for vertex 28401 / 63026 ... creating path file for vertex 28501 / 63026 ... creating path file for vertex 28601 / 63026 ... creating path file for vertex 28701 / 63026 ... creating path file for vertex 28801 / 63026 ... creating path file for vertex 28901 / 63026 ... creating path file for vertex 29001 / 63026 ... creating path file for vertex 29101 / 63026 ... creating path file for vertex 29201 / 63026 ... creating path file for vertex 29301 / 63026 ... creating path file for vertex 29401 / 63026 ... creating path file for vertex 29501 / 63026 ... creating path file for vertex 29601 / 63026 ... creating path file for vertex 29701 / 63026 ... creating path file for vertex 29801 / 63026 ... creating path file for vertex 29901 / 63026 ... creating path file for vertex 30001 / 63026 area file for outer ROIs saved at 30001 ... creating path file for vertex 30101 / 63026 ... creating path file for vertex 30201 / 63026 ... creating path file for vertex 30301 / 63026 ... creating path file for vertex 30401 / 63026 ... creating path file for vertex 30501 / 63026 ... creating path file for vertex 30601 / 63026 ... creating path file for vertex 30701 / 63026 ... creating path file for vertex 30801 / 63026 ... creating path file for vertex 30901 / 63026 ... creating path file for vertex 31001 / 63026 ... creating path file for vertex 31101 / 63026 ... creating path file for vertex 31201 / 63026 ... creating path file for vertex 31301 / 63026 ... creating path file for vertex 31401 / 63026 ... creating path file for vertex 31501 / 63026 ... creating path file for vertex 31601 / 63026 ... creating path file for vertex 31701 / 63026 ... creating path file for vertex 31801 / 63026 ... creating path file for vertex 31901 / 63026 ... creating path file for vertex 32001 / 63026 ... creating path file for vertex 32101 / 63026 ... creating path file for vertex 32201 / 63026 ... creating path file for vertex 32301 / 63026 ... creating path file for vertex 32401 / 63026 ... creating path file for vertex 32501 / 63026 ... creating path file for vertex 32601 / 63026 ... creating path file for vertex 32701 / 63026 ... creating path file for vertex 32801 / 63026 ... creating path file for vertex 32901 / 63026 ... creating path file for vertex 33001 / 63026 ... creating path file for vertex 33101 / 63026 ... creating path file for vertex 33201 / 63026 ... creating path file for vertex 33301 / 63026 ... creating path file for vertex 33401 / 63026 ... creating path file for vertex 33501 / 63026 ... creating path file for vertex 33601 / 63026 ... creating path file for vertex 33701 / 63026 ... creating path file for vertex 33801 / 63026 ... creating path file for vertex 33901 / 63026 ... creating path file for vertex 34001 / 63026 ... creating path file for vertex 34101 / 63026 ... creating path file for vertex 34201 / 63026 ... creating path file for vertex 34301 / 63026 ... creating path file for vertex 34401 / 63026 ... creating path file for vertex 34501 / 63026 ... creating path file for vertex 34601 / 63026 ... creating path file for vertex 34701 / 63026 ... creating path file for vertex 34801 / 63026 ... creating path file for vertex 34901 / 63026 ... creating path file for vertex 35001 / 63026 area file for outer ROIs saved at 35001 ... creating path file for vertex 35101 / 63026 ... creating path file for vertex 35201 / 63026 ... creating path file for vertex 35301 / 63026 ... creating path file for vertex 35401 / 63026 ... creating path file for vertex 35501 / 63026 ... creating path file for vertex 35601 / 63026 ... creating path file for vertex 35701 / 63026 ... creating path file for vertex 35801 / 63026 ... creating path file for vertex 35901 / 63026 ... creating path file for vertex 36001 / 63026 ... creating path file for vertex 36101 / 63026 ... creating path file for vertex 36201 / 63026 ... creating path file for vertex 36301 / 63026 ... creating path file for vertex 36401 / 63026 ... creating path file for vertex 36501 / 63026 ... creating path file for vertex 36601 / 63026 ... creating path file for vertex 36701 / 63026 ... creating path file for vertex 36801 / 63026 ... creating path file for vertex 36901 / 63026 ... creating path file for vertex 37001 / 63026 ... creating path file for vertex 37101 / 63026 ... creating path file for vertex 37201 / 63026 ... creating path file for vertex 37301 / 63026 ... creating path file for vertex 37401 / 63026 ... creating path file for vertex 37501 / 63026 ... creating path file for vertex 37601 / 63026 ... creating path file for vertex 37701 / 63026 ... creating path file for vertex 37801 / 63026 ... creating path file for vertex 37901 / 63026 ... creating path file for vertex 38001 / 63026 ... creating path file for vertex 38101 / 63026 ... creating path file for vertex 38201 / 63026 ... creating path file for vertex 38301 / 63026 ... creating path file for vertex 38401 / 63026 ... creating path file for vertex 38501 / 63026 ... creating path file for vertex 38601 / 63026 ... creating path file for vertex 38701 / 63026 ... creating path file for vertex 38801 / 63026 ... creating path file for vertex 38901 / 63026 ... creating path file for vertex 39001 / 63026 ... creating path file for vertex 39101 / 63026 ... creating path file for vertex 39201 / 63026 ... creating path file for vertex 39301 / 63026 ... creating path file for vertex 39401 / 63026 ... creating path file for vertex 39501 / 63026 ... creating path file for vertex 39601 / 63026 ... creating path file for vertex 39701 / 63026 ... creating path file for vertex 39801 / 63026 ... creating path file for vertex 39901 / 63026 ... creating path file for vertex 40001 / 63026 area file for outer ROIs saved at 40001 ... creating path file for vertex 40101 / 63026 ... creating path file for vertex 40201 / 63026 ... creating path file for vertex 40301 / 63026 ... creating path file for vertex 40401 / 63026 ... creating path file for vertex 40501 / 63026 ... creating path file for vertex 40601 / 63026 ... creating path file for vertex 40701 / 63026 ... creating path file for vertex 40801 / 63026 ... creating path file for vertex 40901 / 63026 ... creating path file for vertex 41001 / 63026 ... creating path file for vertex 41101 / 63026 ... creating path file for vertex 41201 / 63026 ... creating path file for vertex 41301 / 63026 ... creating path file for vertex 41401 / 63026 ... creating path file for vertex 41501 / 63026 ... creating path file for vertex 41601 / 63026 ... creating path file for vertex 41701 / 63026 ... creating path file for vertex 41801 / 63026 ... creating path file for vertex 41901 / 63026 ... creating path file for vertex 42001 / 63026 ... creating path file for vertex 42101 / 63026 ... creating path file for vertex 42201 / 63026 ... creating path file for vertex 42301 / 63026 ... creating path file for vertex 42401 / 63026 ... creating path file for vertex 42501 / 63026 ... creating path file for vertex 42601 / 63026 ... creating path file for vertex 42701 / 63026 ... creating path file for vertex 42801 / 63026 ... creating path file for vertex 42901 / 63026 ... creating path file for vertex 43001 / 63026 ... creating path file for vertex 43101 / 63026 ... creating path file for vertex 43201 / 63026 ... creating path file for vertex 43301 / 63026 ... creating path file for vertex 43401 / 63026 ... creating path file for vertex 43501 / 63026 ... creating path file for vertex 43601 / 63026 ... creating path file for vertex 43701 / 63026 ... creating path file for vertex 43801 / 63026 ... creating path file for vertex 43901 / 63026 ... creating path file for vertex 44001 / 63026 ... creating path file for vertex 44101 / 63026 ... creating path file for vertex 44201 / 63026 ... creating path file for vertex 44301 / 63026 ... creating path file for vertex 44401 / 63026 ... creating path file for vertex 44501 / 63026 ... creating path file for vertex 44601 / 63026 ... creating path file for vertex 44701 / 63026 ... creating path file for vertex 44801 / 63026 ... creating path file for vertex 44901 / 63026 ... creating path file for vertex 45001 / 63026 area file for outer ROIs saved at 45001 ... creating path file for vertex 45101 / 63026 ... creating path file for vertex 45201 / 63026 ... creating path file for vertex 45301 / 63026 ... creating path file for vertex 45401 / 63026 ... creating path file for vertex 45501 / 63026 ... creating path file for vertex 45601 / 63026 ... creating path file for vertex 45701 / 63026 ... creating path file for vertex 45801 / 63026 ... creating path file for vertex 45901 / 63026 ... creating path file for vertex 46001 / 63026 ... creating path file for vertex 46101 / 63026 ... creating path file for vertex 46201 / 63026 ... creating path file for vertex 46301 / 63026 ... creating path file for vertex 46401 / 63026 ... creating path file for vertex 46501 / 63026 ... creating path file for vertex 46601 / 63026 ... creating path file for vertex 46701 / 63026 ... creating path file for vertex 46801 / 63026 ... creating path file for vertex 46901 / 63026 ... creating path file for vertex 47001 / 63026 ... creating path file for vertex 47101 / 63026 ... creating path file for vertex 47201 / 63026 ... creating path file for vertex 47301 / 63026 ... creating path file for vertex 47401 / 63026 ... creating path file for vertex 47501 / 63026 ... creating path file for vertex 47601 / 63026 ... creating path file for vertex 47701 / 63026 ... creating path file for vertex 47801 / 63026 ... creating path file for vertex 47901 / 63026 ... creating path file for vertex 48001 / 63026 ... creating path file for vertex 48101 / 63026 ... creating path file for vertex 48201 / 63026 ... creating path file for vertex 48301 / 63026 ... creating path file for vertex 48401 / 63026 ... creating path file for vertex 48501 / 63026 ... creating path file for vertex 48601 / 63026 ... creating path file for vertex 48701 / 63026 ... creating path file for vertex 48801 / 63026 ... creating path file for vertex 48901 / 63026 ... creating path file for vertex 49001 / 63026 ... creating path file for vertex 49101 / 63026 ... creating path file for vertex 49201 / 63026 ... creating path file for vertex 49301 / 63026 ... creating path file for vertex 49401 / 63026 ... creating path file for vertex 49501 / 63026 ... creating path file for vertex 49601 / 63026 ... creating path file for vertex 49701 / 63026 ... creating path file for vertex 49801 / 63026 ... creating path file for vertex 49901 / 63026 ... creating path file for vertex 50001 / 63026 area file for outer ROIs saved at 50001 ... creating path file for vertex 50101 / 63026 ... creating path file for vertex 50201 / 63026 ... creating path file for vertex 50301 / 63026 ... creating path file for vertex 50401 / 63026 ... creating path file for vertex 50501 / 63026 ... creating path file for vertex 50601 / 63026 ... creating path file for vertex 50701 / 63026 ... creating path file for vertex 50801 / 63026 ... creating path file for vertex 50901 / 63026 ... creating path file for vertex 51001 / 63026 ... creating path file for vertex 51101 / 63026 ... creating path file for vertex 51201 / 63026 ... creating path file for vertex 51301 / 63026 ... creating path file for vertex 51401 / 63026 ... creating path file for vertex 51501 / 63026 ... creating path file for vertex 51601 / 63026 ... creating path file for vertex 51701 / 63026 ... creating path file for vertex 51801 / 63026 ... creating path file for vertex 51901 / 63026 ... creating path file for vertex 52001 / 63026 ... creating path file for vertex 52101 / 63026 ... creating path file for vertex 52201 / 63026 ... creating path file for vertex 52301 / 63026 ... creating path file for vertex 52401 / 63026 ... creating path file for vertex 52501 / 63026 ... creating path file for vertex 52601 / 63026 ... creating path file for vertex 52701 / 63026 ... creating path file for vertex 52801 / 63026 non geodesic regions removed from the patch ... creating path file for vertex 52901 / 63026 ... creating path file for vertex 53001 / 63026 ... creating path file for vertex 53101 / 63026 ... creating path file for vertex 53201 / 63026 ... creating path file for vertex 53301 / 63026 ... creating path file for vertex 53401 / 63026 ... creating path file for vertex 53501 / 63026 ... creating path file for vertex 53601 / 63026 ... creating path file for vertex 53701 / 63026 ... creating path file for vertex 53801 / 63026 ... creating path file for vertex 53901 / 63026 ... creating path file for vertex 54001 / 63026 ... creating path file for vertex 54101 / 63026 ... creating path file for vertex 54201 / 63026 ... creating path file for vertex 54301 / 63026 ... creating path file for vertex 54401 / 63026 ... creating path file for vertex 54501 / 63026 ... creating path file for vertex 54601 / 63026 ... creating path file for vertex 54701 / 63026 ... creating path file for vertex 54801 / 63026 ... creating path file for vertex 54901 / 63026 ... creating path file for vertex 55001 / 63026 non geodesic regions removed from the patch area file for outer ROIs saved at 55001 ... creating path file for vertex 55101 / 63026 ... creating path file for vertex 55201 / 63026 ... creating path file for vertex 55301 / 63026 ... creating path file for vertex 55401 / 63026 ... creating path file for vertex 55501 / 63026 ... creating path file for vertex 55601 / 63026 ... creating path file for vertex 55701 / 63026 ... creating path file for vertex 55801 / 63026 ... creating path file for vertex 55901 / 63026 ... creating path file for vertex 56001 / 63026 ... creating path file for vertex 56101 / 63026 ... creating path file for vertex 56201 / 63026 ... creating path file for vertex 56301 / 63026 ... creating path file for vertex 56401 / 63026 ... creating path file for vertex 56501 / 63026 ... creating path file for vertex 56601 / 63026 ... creating path file for vertex 56701 / 63026 ... creating path file for vertex 56801 / 63026 ... creating path file for vertex 56901 / 63026 ... creating path file for vertex 57001 / 63026 ... creating path file for vertex 57101 / 63026 ... creating path file for vertex 57201 / 63026 ... creating path file for vertex 57301 / 63026 ... creating path file for vertex 57401 / 63026 ... creating path file for vertex 57501 / 63026 ... creating path file for vertex 57601 / 63026 ... creating path file for vertex 57701 / 63026 ... creating path file for vertex 57801 / 63026 ... creating path file for vertex 57901 / 63026 ... creating path file for vertex 58001 / 63026 ... creating path file for vertex 58101 / 63026 ... creating path file for vertex 58201 / 63026 ... creating path file for vertex 58301 / 63026 ... creating path file for vertex 58401 / 63026 ... creating path file for vertex 58501 / 63026 ... creating path file for vertex 58601 / 63026 ... creating path file for vertex 58701 / 63026 ... creating path file for vertex 58801 / 63026 ... creating path file for vertex 58901 / 63026 ... creating path file for vertex 59001 / 63026 ... creating path file for vertex 59101 / 63026 ... creating path file for vertex 59201 / 63026 ... creating path file for vertex 59301 / 63026 ... creating path file for vertex 59401 / 63026 ... creating path file for vertex 59501 / 63026 ... creating path file for vertex 59601 / 63026 ... creating path file for vertex 59701 / 63026 ... creating path file for vertex 59801 / 63026 ... creating path file for vertex 59901 / 63026 ... creating path file for vertex 60001 / 63026 area file for outer ROIs saved at 60001 ... creating path file for vertex 60101 / 63026 ... creating path file for vertex 60201 / 63026 ... creating path file for vertex 60301 / 63026 ... creating path file for vertex 60401 / 63026 ... creating path file for vertex 60501 / 63026 ... creating path file for vertex 60601 / 63026 ... creating path file for vertex 60701 / 63026 ... creating path file for vertex 60801 / 63026 ... creating path file for vertex 60901 / 63026 ... creating path file for vertex 61001 / 63026 ... creating path file for vertex 61101 / 63026 ... creating path file for vertex 61201 / 63026 ... creating path file for vertex 61301 / 63026 ... creating path file for vertex 61401 / 63026 ... creating path file for vertex 61501 / 63026 ... creating path file for vertex 61601 / 63026 ... creating path file for vertex 61701 / 63026 ... creating path file for vertex 61801 / 63026 ... creating path file for vertex 61901 / 63026 ... creating path file for vertex 62001 / 63026 ... creating path file for vertex 62101 / 63026 ... creating path file for vertex 62201 / 63026 ... creating path file for vertex 62301 / 63026 ... creating path file for vertex 62401 / 63026 ... creating path file for vertex 62501 / 63026 ... creating path file for vertex 62601 / 63026 ... creating path file for vertex 62701 / 63026 ... creating path file for vertex 62801 / 63026 ... creating path file for vertex 62901 / 63026 ... creating path file for vertex 63001 / 63026 saving area file in matlab format... DONE. deltaT = 905.9500 ================= mri_path2label --confillxfn lh.pial /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/mri_path2label.input ================= Reading lh.pial Connecting and filling vertices in path at fillseed 824 Finding path................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 824 nlabel 10078 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000001.label Connecting and filling vertices in path at fillseed 851 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 851 nlabel 10667 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000101.label Connecting and filling vertices in path at fillseed 2344 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 2344 nlabel 14725 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000201.label Connecting and filling vertices in path at fillseed 2372 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 2372 nlabel 15546 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000301.label Connecting and filling vertices in path at fillseed 2724 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 2724 nlabel 8616 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000401.label Connecting and filling vertices in path at fillseed 2678 Finding path................................................................................................................................................................................................................................................................................................................... done Filling 2678 nlabel 9110 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000501.label Connecting and filling vertices in path at fillseed 2316 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 2316 nlabel 14790 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000601.label Connecting and filling vertices in path at fillseed 2823 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 2823 nlabel 10317 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000701.label Connecting and filling vertices in path at fillseed 3507 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 3507 nlabel 14160 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000801.label Connecting and filling vertices in path at fillseed 2691 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 2691 nlabel 8266 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000901.label Connecting and filling vertices in path at fillseed 3449 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 3449 nlabel 14821 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001001.label Connecting and filling vertices in path at fillseed 6167 Finding path................................................................................................................................................................................................................................................................................................................. done Filling 6167 nlabel 5860 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001101.label Connecting and filling vertices in path at fillseed 4589 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 4589 nlabel 8611 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001201.label Connecting and filling vertices in path at fillseed 4641 Finding path............................................................................................................................................................................................................................................................................................................................................................ done Filling 4641 nlabel 10092 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001301.label Connecting and filling vertices in path at fillseed 4007 Finding path......................................................................................................................................................................................................................................................................................................................... done Filling 4007 nlabel 8488 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001401.label Connecting and filling vertices in path at fillseed 4170 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 4170 nlabel 15022 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001501.label Connecting and filling vertices in path at fillseed 6164 Finding path............................................................................................................................................................................................................................................................................................................. done Filling 6164 nlabel 8516 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001601.label Connecting and filling vertices in path at fillseed 6328 Finding path.............................................................................................................................................................................................................................................................................................................. done Filling 6328 nlabel 9291 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001701.label Connecting and filling vertices in path at fillseed 6240 Finding path........................................................................................................................................................................................................................................................................................................................................................................ done Filling 6240 nlabel 7519 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001801.label Connecting and filling vertices in path at fillseed 5816 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 5816 nlabel 15396 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001901.label Connecting and filling vertices in path at fillseed 7020 Finding path............................................................................................................................................................................................................................................................................................................................................................................ done Filling 7020 nlabel 8119 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002001.label Connecting and filling vertices in path at fillseed 6521 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 6521 nlabel 16899 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002101.label Connecting and filling vertices in path at fillseed 8803 Finding path............................................................................................................................................................................................................................................................................. done Filling 8803 nlabel 4826 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002201.label Connecting and filling vertices in path at fillseed 8868 Finding path................................................................................................................................................................................................................................................................................................................................................................. done Filling 8868 nlabel 8509 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002301.label Connecting and filling vertices in path at fillseed 7203 Finding path.......................................................................................................................................................................................................................................................................................... done Filling 7203 nlabel 9761 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002401.label Connecting and filling vertices in path at fillseed 5527 Finding path.......................................................................................................................................................................................................................................................................................................................................................... done Filling 5527 nlabel 8053 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002501.label Connecting and filling vertices in path at fillseed 8798 Finding path................................................................................................................................................................................................................................................................................ done Filling 8798 nlabel 5068 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002601.label Connecting and filling vertices in path at fillseed 10821 Finding path.......................................................................................................................................................................................................................................................................................................................... done Filling 10821 nlabel 7159 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002701.label Connecting and filling vertices in path at fillseed 8904 Finding path............................................................................................................................................................................................................................................................................................................................................. done Filling 8904 nlabel 8429 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002801.label Connecting and filling vertices in path at fillseed 8321 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 8321 nlabel 15219 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002901.label Connecting and filling vertices in path at fillseed 8450 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 8450 nlabel 14802 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003001.label Connecting and filling vertices in path at fillseed 10783 Finding path.................................................................................................................................................................................................................................................................................................................... done Filling 10783 nlabel 4745 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003101.label Connecting and filling vertices in path at fillseed 6638 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 6638 nlabel 14378 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003201.label Connecting and filling vertices in path at fillseed 8079 Finding path................................................................................................................................................................................................................................................................................................................... done Filling 8079 nlabel 9445 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003301.label Connecting and filling vertices in path at fillseed 13427 Finding path............................................................................................................................................................................................................................................................................................................... done Filling 13427 nlabel 7405 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003401.label Connecting and filling vertices in path at fillseed 11885 Finding path............................................................................................................................................................ done Filling 11885 nlabel 4134 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003501.label Connecting and filling vertices in path at fillseed 13041 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 13041 nlabel 7278 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003601.label Connecting and filling vertices in path at fillseed 13099 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 13099 nlabel 7807 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003701.label Connecting and filling vertices in path at fillseed 10119 Finding path.......................................................................................................................................................................................................................................................................................................................... done Filling 10119 nlabel 10034 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003801.label Connecting and filling vertices in path at fillseed 11075 Finding path................................................................................................................................................................................................................................................................. done Filling 11075 nlabel 7356 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003901.label Connecting and filling vertices in path at fillseed 11884 Finding path.............................................................................................................................. done Filling 11884 nlabel 3590 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004001.label Connecting and filling vertices in path at fillseed 10537 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 10537 nlabel 15357 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004101.label Connecting and filling vertices in path at fillseed 9240 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 9240 nlabel 11872 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004201.label Connecting and filling vertices in path at fillseed 11171 Finding path.............................................................................................................................................................................................................................................................................................................................. done Filling 11171 nlabel 10289 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004301.label Connecting and filling vertices in path at fillseed 10455 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 10455 nlabel 14623 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004401.label Connecting and filling vertices in path at fillseed 20075 Finding path...................................................................................................................................................................................................................................................................................................................................................... done Filling 20075 nlabel 4840 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004501.label Connecting and filling vertices in path at fillseed 16529 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 16529 nlabel 7681 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004601.label Connecting and filling vertices in path at fillseed 12558 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 12558 nlabel 15421 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004701.label Connecting and filling vertices in path at fillseed 22544 Finding path.............................................................................................................................................. done Filling 22544 nlabel 3133 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004801.label Connecting and filling vertices in path at fillseed 22525 Finding path............................................................................................................................................... done Filling 22525 nlabel 3067 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004901.label Connecting and filling vertices in path at fillseed 20075 Finding path.......................................................................................................................................................................... done Filling 20075 nlabel 4346 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005001.label Connecting and filling vertices in path at fillseed 17769 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 17769 nlabel 8268 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005101.label Connecting and filling vertices in path at fillseed 11180 Finding path....................................................................................................................................................................................................................................................................................................... done Filling 11180 nlabel 10806 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005201.label Connecting and filling vertices in path at fillseed 15818 Finding path....................................................................................................................................................................................................................................................................................................................................... done Filling 15818 nlabel 9611 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005301.label Connecting and filling vertices in path at fillseed 22527 Finding path.......................................................................................................................................................................... done Filling 22527 nlabel 4337 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005401.label Connecting and filling vertices in path at fillseed 20113 Finding path......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 20113 nlabel 7118 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005501.label Connecting and filling vertices in path at fillseed 12462 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 12462 nlabel 13421 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005601.label Connecting and filling vertices in path at fillseed 12128 Finding path............................................................................................................................................................................................................................................................................... done Filling 12128 nlabel 6920 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005701.label Connecting and filling vertices in path at fillseed 22520 Finding path.......................................................................................................................................... done Filling 22520 nlabel 3288 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005801.label Connecting and filling vertices in path at fillseed 13847 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 13847 nlabel 15114 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005901.label Connecting and filling vertices in path at fillseed 18951 Finding path................................................................................................................................................................................................................................................................................................................................................................. done Filling 18951 nlabel 8800 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006001.label Connecting and filling vertices in path at fillseed 14697 Finding path........................................................................................................................................................................................................................................................................................................................................................ done Filling 14697 nlabel 9622 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006101.label Connecting and filling vertices in path at fillseed 22519 Finding path................................................................................................................................................................................................................................................ done Filling 22519 nlabel 3018 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006201.label Connecting and filling vertices in path at fillseed 23764 Finding path................................................................................................................................................................................. done Filling 23764 nlabel 3771 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006301.label Connecting and filling vertices in path at fillseed 14983 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 14983 nlabel 17008 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006401.label Connecting and filling vertices in path at fillseed 19103 Finding path...................................................................................................................................................................................................................................................................................................................................................................... done Filling 19103 nlabel 9958 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006501.label Connecting and filling vertices in path at fillseed 15425 Finding path................................................................................................................................................................................................................................................................................ done Filling 15425 nlabel 6426 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006601.label Connecting and filling vertices in path at fillseed 17448 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 17448 nlabel 14611 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006701.label Connecting and filling vertices in path at fillseed 25027 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 25027 nlabel 7484 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006801.label Connecting and filling vertices in path at fillseed 18398 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 18398 nlabel 12464 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006901.label Connecting and filling vertices in path at fillseed 22585 Finding path......................................................................................................................................................................... done Filling 22585 nlabel 3736 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007001.label Connecting and filling vertices in path at fillseed 16040 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 16040 nlabel 14914 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007101.label Connecting and filling vertices in path at fillseed 27489 Finding path................................................................................................................................................................................................................................... done Filling 27489 nlabel 3785 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007201.label Connecting and filling vertices in path at fillseed 22619 Finding path........................................................................................................................................................................................................................................................................................................ done Filling 22619 nlabel 8235 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007301.label Connecting and filling vertices in path at fillseed 20308 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 20308 nlabel 10122 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007401.label Connecting and filling vertices in path at fillseed 16879 Finding path......................................................................................................................................................................................................................................................................... done Filling 16879 nlabel 7706 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007501.label Connecting and filling vertices in path at fillseed 16283 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 16283 nlabel 14258 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007601.label Connecting and filling vertices in path at fillseed 16158 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 16158 nlabel 15020 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007701.label Connecting and filling vertices in path at fillseed 18350 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 18350 nlabel 7735 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007801.label Connecting and filling vertices in path at fillseed 20660 Finding path............................................................................................................................................................................................................................................................................................................................................................... done Filling 20660 nlabel 10051 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007901.label Connecting and filling vertices in path at fillseed 19850 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 19850 nlabel 16028 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008001.label Connecting and filling vertices in path at fillseed 23843 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 23843 nlabel 8836 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008101.label Connecting and filling vertices in path at fillseed 19539 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 19539 nlabel 11391 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008201.label Connecting and filling vertices in path at fillseed 23773 Finding path................................................................................................................................................... done Filling 23773 nlabel 3384 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008301.label Connecting and filling vertices in path at fillseed 21078 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 21078 nlabel 15784 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008401.label Connecting and filling vertices in path at fillseed 20993 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 20993 nlabel 20508 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008501.label Connecting and filling vertices in path at fillseed 21846 Finding path............................................................................................................................................................................................................................................................................................................................. done Filling 21846 nlabel 7283 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008601.label Connecting and filling vertices in path at fillseed 20295 Finding path................................................................................................................................................................................................................................................................................................................................................ done Filling 20295 nlabel 7226 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008701.label Connecting and filling vertices in path at fillseed 28792 Finding path.................................................................................................................................................................................................. done Filling 28792 nlabel 3736 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008801.label Connecting and filling vertices in path at fillseed 28827 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 28827 nlabel 6572 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008901.label Connecting and filling vertices in path at fillseed 24553 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 24553 nlabel 25542 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009001.label Connecting and filling vertices in path at fillseed 25355 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 25355 nlabel 8056 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009101.label Connecting and filling vertices in path at fillseed 22071 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 22071 nlabel 12758 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009201.label Connecting and filling vertices in path at fillseed 21079 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 21079 nlabel 16641 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009301.label Connecting and filling vertices in path at fillseed 27537 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 27537 nlabel 7984 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009401.label Connecting and filling vertices in path at fillseed 24293 Finding path............................................................................................................................................................................................................................................................................................................................................................................................ done Filling 24293 nlabel 7886 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009501.label Connecting and filling vertices in path at fillseed 34397 Finding path...................................................................................................................................................................................... done Filling 34397 nlabel 3357 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009601.label Connecting and filling vertices in path at fillseed 27484 Finding path....................................................................................................................................................................... done Filling 27484 nlabel 3824 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009701.label Connecting and filling vertices in path at fillseed 31080 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 31080 nlabel 6009 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009801.label Connecting and filling vertices in path at fillseed 24675 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 24675 nlabel 26821 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009901.label Connecting and filling vertices in path at fillseed 27888 Finding path....................................................................................................................................................................................................................................................................................................................................... done Filling 27888 nlabel 9866 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010001.label Connecting and filling vertices in path at fillseed 24344 Finding path............................................................................................................................................................................................................................. done Filling 24344 nlabel 8181 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010101.label Connecting and filling vertices in path at fillseed 23505 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 23505 nlabel 16636 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010201.label Connecting and filling vertices in path at fillseed 27518 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 27518 nlabel 6789 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010301.label Connecting and filling vertices in path at fillseed 25830 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 25830 nlabel 25649 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010401.label Connecting and filling vertices in path at fillseed 24198 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 24198 nlabel 7882 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010501.label Connecting and filling vertices in path at fillseed 35517 Finding path.............................................................................................................................................................. done Filling 35517 nlabel 3509 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010601.label Connecting and filling vertices in path at fillseed 28554 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 28554 nlabel 17132 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010701.label Connecting and filling vertices in path at fillseed 27536 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 27536 nlabel 6811 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010801.label Connecting and filling vertices in path at fillseed 29452 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 29452 nlabel 10949 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010901.label Connecting and filling vertices in path at fillseed 25239 Finding path................................................................................................................................................................................. done Filling 25239 nlabel 6453 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011001.label Connecting and filling vertices in path at fillseed 36643 Finding path.................................................................................................................................................... done Filling 36643 nlabel 2050 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011101.label Connecting and filling vertices in path at fillseed 38851 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 38851 nlabel 6433 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011201.label Connecting and filling vertices in path at fillseed 28342 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 28342 nlabel 12068 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011301.label Connecting and filling vertices in path at fillseed 28875 Finding path................................................................................................................................................................................ done Filling 28875 nlabel 5710 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011401.label Connecting and filling vertices in path at fillseed 29732 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 29732 nlabel 13464 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011501.label Connecting and filling vertices in path at fillseed 35515 Finding path................................................................................................................................................................................................................................................................................................................................................... done Filling 35515 nlabel 3565 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011601.label Connecting and filling vertices in path at fillseed 28944 Finding path....................................................................................................................................................................................................................................................................................................................................................................... done Filling 28944 nlabel 9547 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011701.label Connecting and filling vertices in path at fillseed 36681 Finding path............................................................................................................................................................................... done Filling 36681 nlabel 3538 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011801.label Connecting and filling vertices in path at fillseed 30610 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 30610 nlabel 7995 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011901.label Connecting and filling vertices in path at fillseed 30906 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 30906 nlabel 19349 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012001.label Connecting and filling vertices in path at fillseed 37824 Finding path............................................................................................................................................................................................................................................................................................................................................................................................ done Filling 37824 nlabel 7700 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012101.label Connecting and filling vertices in path at fillseed 32708 Finding path........................................................................................................................................................................................................................................................................................................................ done Filling 32708 nlabel 8873 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012201.label Connecting and filling vertices in path at fillseed 32395 Finding path...................................................................................................................................................................................... done Filling 32395 nlabel 5907 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012301.label Connecting and filling vertices in path at fillseed 31880 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 31880 nlabel 16728 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012401.label Connecting and filling vertices in path at fillseed 38841 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 38841 nlabel 6132 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012501.label Connecting and filling vertices in path at fillseed 30107 Finding path......................................................................................................................................................................................................................................................................................................................................................................... done Filling 30107 nlabel 9131 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012601.label Connecting and filling vertices in path at fillseed 38856 Finding path................................................................................................................................................................................................................. done Filling 38856 nlabel 4685 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012701.label Connecting and filling vertices in path at fillseed 33939 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 33939 nlabel 13005 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012801.label Connecting and filling vertices in path at fillseed 37719 Finding path..................................................................................................................................................................................................................... done Filling 37719 nlabel 3908 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012901.label Connecting and filling vertices in path at fillseed 32999 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 32999 nlabel 24811 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013001.label Connecting and filling vertices in path at fillseed 33686 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 33686 nlabel 8479 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013101.label Connecting and filling vertices in path at fillseed 29332 Finding path................................................................................................................................................................................................................................................................................................... done Filling 29332 nlabel 8135 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013201.label Connecting and filling vertices in path at fillseed 34104 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 34104 nlabel 15717 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013301.label Connecting and filling vertices in path at fillseed 36383 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 36383 nlabel 24417 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013401.label Connecting and filling vertices in path at fillseed 38322 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 38322 nlabel 23863 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013501.label Connecting and filling vertices in path at fillseed 36046 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 36046 nlabel 7110 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013601.label Connecting and filling vertices in path at fillseed 35046 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 35046 nlabel 8743 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013701.label Connecting and filling vertices in path at fillseed 39818 Finding path........................................................................................................................................................................................................... done Filling 39818 nlabel 3673 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013801.label Connecting and filling vertices in path at fillseed 35156 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 35156 nlabel 24970 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013901.label Connecting and filling vertices in path at fillseed 40156 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 40156 nlabel 8829 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014001.label Connecting and filling vertices in path at fillseed 38831 Finding path........................................................................................................................................................................................................................ done Filling 38831 nlabel 3949 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014101.label Connecting and filling vertices in path at fillseed 37701 Finding path................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 37701 nlabel 2362 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014201.label Connecting and filling vertices in path at fillseed 46223 Finding path............................................................................................................................................................................................................ done Filling 46223 nlabel 3797 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014301.label Connecting and filling vertices in path at fillseed 43102 Finding path.......................................................................................................................................................................................................................................................................................................................................................... done Filling 43102 nlabel 7972 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014401.label Connecting and filling vertices in path at fillseed 37080 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 37080 nlabel 7866 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014501.label Connecting and filling vertices in path at fillseed 38799 Finding path....................................................................................................................................................................................................................... done Filling 38799 nlabel 2280 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014601.label Connecting and filling vertices in path at fillseed 38415 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 38415 nlabel 13793 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014701.label Connecting and filling vertices in path at fillseed 42037 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 42037 nlabel 6758 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014801.label Connecting and filling vertices in path at fillseed 46449 Finding path........................................................................................................................................................................................................................................................................................................................................................................................... done Filling 46449 nlabel 7957 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014901.label Connecting and filling vertices in path at fillseed 37760 Finding path................................................................................................................................................................................................ done Filling 37760 nlabel 4406 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015001.label Connecting and filling vertices in path at fillseed 38397 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 38397 nlabel 8845 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015101.label Connecting and filling vertices in path at fillseed 46235 Finding path..................................................................................................................................................................................................... done Filling 46235 nlabel 4087 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015201.label Connecting and filling vertices in path at fillseed 37433 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 37433 nlabel 23947 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015301.label Connecting and filling vertices in path at fillseed 39213 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 39213 nlabel 7979 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015401.label Connecting and filling vertices in path at fillseed 46213 Finding path.................................................................................................................................................................................................................................................................................................................................. done Filling 46213 nlabel 1873 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015501.label Connecting and filling vertices in path at fillseed 41684 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 41684 nlabel 8519 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015601.label Connecting and filling vertices in path at fillseed 46235 Finding path......................................................................................................................................................................................................................................... done Filling 46235 nlabel 4188 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015701.label Connecting and filling vertices in path at fillseed 45246 Finding path................................................................................................................................................................................................................................................................................................................................................................. done Filling 45246 nlabel 7811 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015801.label Connecting and filling vertices in path at fillseed 39418 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 39418 nlabel 21555 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015901.label Connecting and filling vertices in path at fillseed 38002 Finding path.............................................................................................................................................................................. done Filling 38002 nlabel 6043 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016001.label Connecting and filling vertices in path at fillseed 47327 Finding path................................................................................................................................................................................................ done Filling 47327 nlabel 2324 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016101.label Connecting and filling vertices in path at fillseed 46210 Finding path........................................................................................................................................................................................................... done Filling 46210 nlabel 3933 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016201.label Connecting and filling vertices in path at fillseed 43089 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 43089 nlabel 7895 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016301.label Connecting and filling vertices in path at fillseed 39350 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 39350 nlabel 9029 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016401.label Connecting and filling vertices in path at fillseed 36862 Finding path................................................................................................................................................................................................. done Filling 36862 nlabel 6101 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016501.label Connecting and filling vertices in path at fillseed 43683 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 43683 nlabel 10445 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016601.label Connecting and filling vertices in path at fillseed 42820 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 42820 nlabel 23435 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016701.label Connecting and filling vertices in path at fillseed 47535 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 47535 nlabel 7662 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016801.label Connecting and filling vertices in path at fillseed 40525 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 40525 nlabel 24308 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016901.label Connecting and filling vertices in path at fillseed 36822 Finding path................................................................................................................................................................................................ done Filling 36822 nlabel 6236 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017001.label Connecting and filling vertices in path at fillseed 47345 Finding path.................................................................................................................................................................................................... done Filling 47345 nlabel 3224 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017101.label Connecting and filling vertices in path at fillseed 48507 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 48507 nlabel 7021 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017201.label Connecting and filling vertices in path at fillseed 48724 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 48724 nlabel 7255 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017301.label Connecting and filling vertices in path at fillseed 47361 Finding path.............................................................................................................................................. done Filling 47361 nlabel 2985 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017401.label Connecting and filling vertices in path at fillseed 48392 Finding path....................................................................................................................................... done Filling 48392 nlabel 1898 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017501.label Connecting and filling vertices in path at fillseed 46047 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 46047 nlabel 23101 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017601.label Connecting and filling vertices in path at fillseed 50762 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 50762 nlabel 6689 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017701.label Connecting and filling vertices in path at fillseed 49675 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 49675 nlabel 7988 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017801.label Connecting and filling vertices in path at fillseed 41499 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 41499 nlabel 9645 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017901.label Connecting and filling vertices in path at fillseed 44082 Finding path............................................................................................................................................................... done Filling 44082 nlabel 4516 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018001.label Connecting and filling vertices in path at fillseed 48104 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 48104 nlabel 9106 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018101.label Connecting and filling vertices in path at fillseed 53926 Finding path.................................................................................................................................................................................................................................................................................................................. done Filling 53926 nlabel 6150 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018201.label Connecting and filling vertices in path at fillseed 47497 Finding path.................................................................................................................................................................................................................................................................................................................................................................................... done Filling 47497 nlabel 8070 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018301.label Connecting and filling vertices in path at fillseed 41525 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 41525 nlabel 9799 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018401.label Connecting and filling vertices in path at fillseed 47670 Finding path.................................................................................................................................................................................. done Filling 47670 nlabel 6242 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018501.label Connecting and filling vertices in path at fillseed 43699 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 43699 nlabel 23679 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018601.label Connecting and filling vertices in path at fillseed 43741 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 43741 nlabel 25610 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018701.label Connecting and filling vertices in path at fillseed 44530 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 44530 nlabel 9383 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018801.label Connecting and filling vertices in path at fillseed 46394 Finding path........................................................................................................................................................................................ done Filling 46394 nlabel 5811 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018901.label Connecting and filling vertices in path at fillseed 51805 Finding path............................................................................................................................... done Filling 51805 nlabel 2278 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019001.label Connecting and filling vertices in path at fillseed 44824 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 44824 nlabel 25025 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019101.label Connecting and filling vertices in path at fillseed 45722 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 45722 nlabel 8847 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019201.label Connecting and filling vertices in path at fillseed 47387 Finding path..................................................................................................................................................... done Filling 47387 nlabel 4196 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019301.label Connecting and filling vertices in path at fillseed 48098 Finding path.............................................................................................................................................................................................................................................................................................................................................................. done Filling 48098 nlabel 8262 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019401.label Connecting and filling vertices in path at fillseed 51872 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 51872 nlabel 9128 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019501.label Connecting and filling vertices in path at fillseed 49184 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 49184 nlabel 23062 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019601.label Connecting and filling vertices in path at fillseed 48455 Finding path............................................................................................................................. done Filling 48455 nlabel 4397 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019701.label Connecting and filling vertices in path at fillseed 51805 Finding path.................................................................................................................. done Filling 51805 nlabel 1913 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019801.label Connecting and filling vertices in path at fillseed 56919 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 56919 nlabel 23980 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019901.label Connecting and filling vertices in path at fillseed 51587 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 51587 nlabel 22963 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020001.label Connecting and filling vertices in path at fillseed 52418 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 52418 nlabel 9397 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020101.label Connecting and filling vertices in path at fillseed 48656 Finding path.................................................................................................................................................. done Filling 48656 nlabel 5139 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020201.label Connecting and filling vertices in path at fillseed 51806 Finding path.......................................................................................................................... done Filling 51806 nlabel 2464 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020301.label Connecting and filling vertices in path at fillseed 51875 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 51875 nlabel 7647 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020401.label Connecting and filling vertices in path at fillseed 52068 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 52068 nlabel 8503 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020501.label Connecting and filling vertices in path at fillseed 50727 Finding path...................................................................................................................................... done Filling 50727 nlabel 4389 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020601.label Connecting and filling vertices in path at fillseed 50250 Finding path..................................................................................................................................................................................................................................................................................................... done Filling 50250 nlabel 5598 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020701.label Connecting and filling vertices in path at fillseed 47346 Finding path............................................................................................................................................................................................................................................ done Filling 47346 nlabel 5319 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020801.label Connecting and filling vertices in path at fillseed 53967 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 53967 nlabel 9309 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020901.label Connecting and filling vertices in path at fillseed 49052 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 49052 nlabel 10076 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021001.label Connecting and filling vertices in path at fillseed 51910 Finding path..................................................................................................................................................... done Filling 51910 nlabel 5112 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021101.label Connecting and filling vertices in path at fillseed 56751 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 56751 nlabel 9488 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021201.label Connecting and filling vertices in path at fillseed 52897 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 52897 nlabel 7339 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021301.label Connecting and filling vertices in path at fillseed 54065 Finding path................................................................................................................................................................................................................................................................................................................................................................................. done Filling 54065 nlabel 7419 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021401.label Connecting and filling vertices in path at fillseed 53883 Finding path.................................................................................................................................................. done Filling 53883 nlabel 1073 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021501.label Connecting and filling vertices in path at fillseed 51333 Finding path................................................................................................................................................................................................................................................................................................................................ done Filling 51333 nlabel 5848 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021601.label Connecting and filling vertices in path at fillseed 56917 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 56917 nlabel 21590 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021701.label Connecting and filling vertices in path at fillseed 55051 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 55051 nlabel 7212 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021801.label Connecting and filling vertices in path at fillseed 54463 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 54463 nlabel 8918 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021901.label Connecting and filling vertices in path at fillseed 54255 Finding path......................................................................................................................................................................................... done Filling 54255 nlabel 6625 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022001.label Connecting and filling vertices in path at fillseed 55700 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 55700 nlabel 22428 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022101.label Connecting and filling vertices in path at fillseed 54680 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 54680 nlabel 23254 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022201.label Connecting and filling vertices in path at fillseed 55274 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 55274 nlabel 6822 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022301.label Connecting and filling vertices in path at fillseed 53929 Finding path............................................................................................................................................................................................... done Filling 53929 nlabel 4244 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022401.label Connecting and filling vertices in path at fillseed 57826 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 57826 nlabel 7969 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022501.label Connecting and filling vertices in path at fillseed 58325 Finding path....................................................................................................................................................................................................................................................... done Filling 58325 nlabel 5261 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022601.label Connecting and filling vertices in path at fillseed 57289 Finding path.............................................................................................................................................................................................................................................................................................................................. done Filling 57289 nlabel 6633 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022701.label Connecting and filling vertices in path at fillseed 57605 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 57605 nlabel 7902 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022801.label Connecting and filling vertices in path at fillseed 53002 Finding path........................................................................................................................................................................ done Filling 53002 nlabel 5459 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022901.label Connecting and filling vertices in path at fillseed 64814 Finding path................................................................................................................................ done Filling 64814 nlabel 2487 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023001.label Connecting and filling vertices in path at fillseed 56101 Finding path............................................................................................................................................................................................................................................................................................................................................................... done Filling 56101 nlabel 7089 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023101.label Connecting and filling vertices in path at fillseed 57426 Finding path........................................................................................................................................................................................................................................................................................................................... done Filling 57426 nlabel 7778 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023201.label Connecting and filling vertices in path at fillseed 57214 Finding path...................................................................................................................................................................................................................... done Filling 57214 nlabel 3450 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023301.label Connecting and filling vertices in path at fillseed 58913 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 58913 nlabel 6178 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023401.label Connecting and filling vertices in path at fillseed 58327 Finding path.................................................................................................................................................................................................................................... done Filling 58327 nlabel 5316 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023501.label Connecting and filling vertices in path at fillseed 57980 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 57980 nlabel 23119 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023601.label Connecting and filling vertices in path at fillseed 58834 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 58834 nlabel 9133 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023701.label Connecting and filling vertices in path at fillseed 58653 Finding path..................................................................................................................................................................................... done Filling 58653 nlabel 6803 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023801.label Connecting and filling vertices in path at fillseed 59071 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 59071 nlabel 22304 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023901.label Connecting and filling vertices in path at fillseed 58429 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 58429 nlabel 6531 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024001.label Connecting and filling vertices in path at fillseed 58724 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 58724 nlabel 8997 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024101.label Connecting and filling vertices in path at fillseed 59471 Finding path....................................................................................................................................................................... done Filling 59471 nlabel 4660 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024201.label Connecting and filling vertices in path at fillseed 60168 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60168 nlabel 23851 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024301.label Connecting and filling vertices in path at fillseed 60275 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60275 nlabel 19007 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024401.label Connecting and filling vertices in path at fillseed 59760 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 59760 nlabel 8633 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024501.label Connecting and filling vertices in path at fillseed 59447 Finding path................................................................................................................................ done Filling 59447 nlabel 3368 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024601.label Connecting and filling vertices in path at fillseed 60167 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60167 nlabel 22835 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024701.label Connecting and filling vertices in path at fillseed 61752 Finding path................................................................................................................................................................................................................................................................................................................................ done Filling 61752 nlabel 6387 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024801.label Connecting and filling vertices in path at fillseed 60966 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60966 nlabel 7645 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024901.label Connecting and filling vertices in path at fillseed 60635 Finding path................................................................................................................................................................. done Filling 60635 nlabel 4834 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025001.label Connecting and filling vertices in path at fillseed 60167 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60167 nlabel 23556 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025101.label Connecting and filling vertices in path at fillseed 62811 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 62811 nlabel 7373 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025201.label Connecting and filling vertices in path at fillseed 65112 Finding path................................................................................................................................................................................................................................................................................................... done Filling 65112 nlabel 6101 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025301.label Connecting and filling vertices in path at fillseed 71566 Finding path............................................................................................................................ done Filling 71566 nlabel 1712 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025401.label Connecting and filling vertices in path at fillseed 63309 Finding path..................................................................................................................................................................................... done Filling 63309 nlabel 5521 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025501.label Connecting and filling vertices in path at fillseed 63564 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 63564 nlabel 18628 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025601.label Connecting and filling vertices in path at fillseed 62398 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 62398 nlabel 21467 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025701.label Connecting and filling vertices in path at fillseed 71566 Finding path........................................................................................................................................................................ done Filling 71566 nlabel 889 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025801.label Connecting and filling vertices in path at fillseed 63862 Finding path.................................................................................................................................................................................. done Filling 63862 nlabel 4375 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025901.label Connecting and filling vertices in path at fillseed 66951 Finding path......................................................................................................................................................................................................................................... done Filling 66951 nlabel 4361 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026001.label Connecting and filling vertices in path at fillseed 61328 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 61328 nlabel 20172 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026101.label Connecting and filling vertices in path at fillseed 63373 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 63373 nlabel 11014 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026201.label Connecting and filling vertices in path at fillseed 60573 Finding path........................................................................................................................................................................................................................... done Filling 60573 nlabel 2344 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026301.label Connecting and filling vertices in path at fillseed 66951 Finding path.............................................................................................................................................................................................................................. done Filling 66951 nlabel 4292 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026401.label Connecting and filling vertices in path at fillseed 65974 Finding path..................................................................................................................................................................................................................................................................................................................................................................................... done Filling 65974 nlabel 6664 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026501.label Connecting and filling vertices in path at fillseed 63147 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 63147 nlabel 7234 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026601.label Connecting and filling vertices in path at fillseed 66041 Finding path...................................................................................................................................................................... done Filling 66041 nlabel 5816 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026701.label Connecting and filling vertices in path at fillseed 67532 Finding path................................................................................................................................................ done Filling 67532 nlabel 5308 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026801.label Connecting and filling vertices in path at fillseed 66700 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 66700 nlabel 18406 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026901.label Connecting and filling vertices in path at fillseed 60787 Finding path............................................................................................................................................................................................................................................................................................................................................................................................ done Filling 60787 nlabel 6321 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027001.label Connecting and filling vertices in path at fillseed 73709 Finding path......................................................................................................................................................................................................................................................... done Filling 73709 nlabel 1468 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027101.label Connecting and filling vertices in path at fillseed 71562 Finding path............................................................................................................................... done Filling 71562 nlabel 1809 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027201.label Connecting and filling vertices in path at fillseed 65857 Finding path.................................................................................................................................................................................................................................... done Filling 65857 nlabel 4204 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027301.label Connecting and filling vertices in path at fillseed 60787 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60787 nlabel 6330 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027401.label Connecting and filling vertices in path at fillseed 73709 Finding path.............................................................................................................................................................................. done Filling 73709 nlabel 905 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027501.label Connecting and filling vertices in path at fillseed 71562 Finding path.................................................................................................................................... done Filling 71562 nlabel 1786 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027601.label Connecting and filling vertices in path at fillseed 66953 Finding path........................................................................................................................................................................................................................................................ done Filling 66953 nlabel 4784 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027701.label Connecting and filling vertices in path at fillseed 65992 Finding path........................................................................................................................................................................................................................................................................................................................................................................................... done Filling 65992 nlabel 6120 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027801.label Connecting and filling vertices in path at fillseed 69973 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 69973 nlabel 9573 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027901.label Connecting and filling vertices in path at fillseed 72621 Finding path........................................................................................................................................................................................ done Filling 72621 nlabel 923 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028001.label Connecting and filling vertices in path at fillseed 66951 Finding path................................................................................................................................................................................................................................................................................ done Filling 66951 nlabel 4852 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028101.label Connecting and filling vertices in path at fillseed 67078 Finding path...................................................................................................................................................................................................................................................................................................................................................................... done Filling 67078 nlabel 5480 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028201.label Connecting and filling vertices in path at fillseed 72121 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 72121 nlabel 11438 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028301.label Connecting and filling vertices in path at fillseed 70528 Finding path................................................................................................................................................................................................................... done Filling 70528 nlabel 3805 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028401.label Connecting and filling vertices in path at fillseed 68897 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 68897 nlabel 19391 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028501.label Connecting and filling vertices in path at fillseed 68159 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 68159 nlabel 6971 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028601.label Connecting and filling vertices in path at fillseed 68380 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 68380 nlabel 6231 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028701.label Connecting and filling vertices in path at fillseed 73717 Finding path.................................................................................................................. done Filling 73717 nlabel 2058 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028801.label Connecting and filling vertices in path at fillseed 73195 Finding path............................................................................................................................................ done Filling 73195 nlabel 5741 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028901.label Connecting and filling vertices in path at fillseed 71313 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 71313 nlabel 17295 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029001.label Connecting and filling vertices in path at fillseed 72357 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 72357 nlabel 120941 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029101.label Connecting and filling vertices in path at fillseed 74006 Finding path................................................................................................................................................................................................................................................... done Filling 74006 nlabel 4744 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029201.label Connecting and filling vertices in path at fillseed 73703 Finding path...................................................................................................................................................................................................................................... done Filling 73703 nlabel 2329 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029301.label Connecting and filling vertices in path at fillseed 73461 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 73461 nlabel 14728 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029401.label Connecting and filling vertices in path at fillseed 73866 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 73866 nlabel 5470 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029501.label Connecting and filling vertices in path at fillseed 74118 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 74118 nlabel 9326 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029601.label Connecting and filling vertices in path at fillseed 72763 Finding path........................................................................................................................................................................................ done Filling 72763 nlabel 5088 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029701.label Connecting and filling vertices in path at fillseed 69955 Finding path................................................................................................................................................. done Filling 69955 nlabel 6084 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029801.label Connecting and filling vertices in path at fillseed 74471 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 74471 nlabel 16173 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029901.label Connecting and filling vertices in path at fillseed 68371 Finding path............................................................................................................................................................................................................................................................................................................................................................................ done Filling 68371 nlabel 7813 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030001.label Connecting and filling vertices in path at fillseed 74726 Finding path..................................................................................................................... done Filling 74726 nlabel 1638 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030101.label Connecting and filling vertices in path at fillseed 77288 Finding path.................................................................................................................................................................................................... done Filling 77288 nlabel 6194 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030201.label Connecting and filling vertices in path at fillseed 72623 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 72623 nlabel 6287 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030301.label Connecting and filling vertices in path at fillseed 72761 Finding path..................................................................................................................................................................................................................................................................................................................................................................................... done Filling 72761 nlabel 8392 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030401.label Connecting and filling vertices in path at fillseed 75144 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 75144 nlabel 11753 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030501.label Connecting and filling vertices in path at fillseed 75825 Finding path................................................................................................................ done Filling 75825 nlabel 1259 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030601.label Connecting and filling vertices in path at fillseed 75834 Finding path........................................................................................................................................................................................................................................... done Filling 75834 nlabel 2518 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030701.label Connecting and filling vertices in path at fillseed 76564 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 76564 nlabel 3848 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030801.label Connecting and filling vertices in path at fillseed 74500 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 74500 nlabel 122971 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030901.label Connecting and filling vertices in path at fillseed 75199 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 75199 nlabel 13055 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031001.label Connecting and filling vertices in path at fillseed 75848 Finding path.......................................................................................................................................................... done Filling 75848 nlabel 2904 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031101.label Connecting and filling vertices in path at fillseed 82893 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 82893 nlabel 5499 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031201.label Connecting and filling vertices in path at fillseed 128944 Finding path..................................................................................................................................................................................................................................................................................................................................................................................... done Filling 128944 nlabel 5409 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031301.label Connecting and filling vertices in path at fillseed 79198 Finding path...................................................................................................................................................................................................................................................................................................................................................................... done Filling 79198 nlabel 8205 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031401.label Connecting and filling vertices in path at fillseed 77181 Finding path........................................................................................................................................................................ done Filling 77181 nlabel 5375 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031501.label Connecting and filling vertices in path at fillseed 80589 Finding path......................................................................................................... done Filling 80589 nlabel 5532 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031601.label Connecting and filling vertices in path at fillseed 79686 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 79686 nlabel 4060 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031701.label Connecting and filling vertices in path at fillseed 77086 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 77086 nlabel 5756 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031801.label Connecting and filling vertices in path at fillseed 76302 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 76302 nlabel 13429 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031901.label Connecting and filling vertices in path at fillseed 79346 Finding path.......................................................................................................................................................................................................... done Filling 79346 nlabel 6692 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032001.label Connecting and filling vertices in path at fillseed 76932 Finding path.................................................................................................................................................................................................................................................................................................................................. done Filling 76932 nlabel 5715 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032101.label Connecting and filling vertices in path at fillseed 81129 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 81129 nlabel 6957 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032201.label Connecting and filling vertices in path at fillseed 76173 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 76173 nlabel 13452 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032301.label Connecting and filling vertices in path at fillseed 78909 Finding path............................................................................................... done Filling 78909 nlabel 2399 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032401.label Connecting and filling vertices in path at fillseed 81685 Finding path................................................................................................................. done Filling 81685 nlabel 5281 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032501.label Connecting and filling vertices in path at fillseed 78932 Finding path.......................................................................................................................................................................... done Filling 78932 nlabel 5433 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032601.label Connecting and filling vertices in path at fillseed 78063 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 78063 nlabel 5747 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032701.label Connecting and filling vertices in path at fillseed 81710 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 81710 nlabel 11667 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032801.label Connecting and filling vertices in path at fillseed 81547 Finding path.................................................................................................................................................................................................................... done Filling 81547 nlabel 5051 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032901.label Connecting and filling vertices in path at fillseed 83933 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 83933 nlabel 5349 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033001.label Connecting and filling vertices in path at fillseed 82214 Finding path................................................................................................................................................................................................................................................................................................................................................................. done Filling 82214 nlabel 7425 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033101.label Connecting and filling vertices in path at fillseed 129122 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 129122 nlabel 11876 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033201.label Connecting and filling vertices in path at fillseed 78909 Finding path........................................................................................ done Filling 78909 nlabel 2260 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033301.label Connecting and filling vertices in path at fillseed 83782 Finding path.................................................................................................................. done Filling 83782 nlabel 5296 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033401.label Connecting and filling vertices in path at fillseed 77924 Finding path............................................................................................................................................................................................................ done Filling 77924 nlabel 4684 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033501.label Connecting and filling vertices in path at fillseed 82907 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 82907 nlabel 5655 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033601.label Connecting and filling vertices in path at fillseed 85748 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 85748 nlabel 14239 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033701.label Connecting and filling vertices in path at fillseed 83236 Finding path....................................................................................................................................................................................... done Filling 83236 nlabel 3859 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033801.label Connecting and filling vertices in path at fillseed 75834 Finding path......................................................................................................................................................................................................................................... done Filling 75834 nlabel 4701 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033901.label Connecting and filling vertices in path at fillseed 83248 Finding path..................................................................................................................................................................................................................................................................................................................................................................................... done Filling 83248 nlabel 7120 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034001.label Connecting and filling vertices in path at fillseed 84563 Finding path......................................................................................................................................................................................................................................................................................................................................................... done Filling 84563 nlabel 8471 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034101.label Connecting and filling vertices in path at fillseed 85417 Finding path.................................................................................................................................................................. done Filling 85417 nlabel 4876 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034201.label Connecting and filling vertices in path at fillseed 85927 Finding path................................................................................................................................................. done Filling 85927 nlabel 5128 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034301.label Connecting and filling vertices in path at fillseed 81065 Finding path.............................................................................................................................................................................. done Filling 81065 nlabel 4846 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034401.label Connecting and filling vertices in path at fillseed 80131 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 80131 nlabel 8051 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034501.label Connecting and filling vertices in path at fillseed 86814 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 86814 nlabel 14118 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034601.label Connecting and filling vertices in path at fillseed 84289 Finding path....................................................................................................................................................................... done Filling 84289 nlabel 4024 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034701.label Connecting and filling vertices in path at fillseed 76940 Finding path.............................................................................. done Filling 76940 nlabel 1326 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034801.label Connecting and filling vertices in path at fillseed 81075 Finding path....................................................................................................................................................................... done Filling 81075 nlabel 5411 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034901.label Connecting and filling vertices in path at fillseed 80131 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 80131 nlabel 7788 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035001.label Connecting and filling vertices in path at fillseed 86843 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 86843 nlabel 11258 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035101.label Connecting and filling vertices in path at fillseed 81040 Finding path.................................................................................. done Filling 81040 nlabel 2152 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035201.label Connecting and filling vertices in path at fillseed 88117 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 88117 nlabel 5300 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035301.label Connecting and filling vertices in path at fillseed 87188 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 87188 nlabel 1318 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035401.label Connecting and filling vertices in path at fillseed 85573 Finding path........................................................................................................................................................................................................................................................................................................ done Filling 85573 nlabel 8557 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035501.label Connecting and filling vertices in path at fillseed 86502 Finding path.................................................................................................................................................................... done Filling 86502 nlabel 4644 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035601.label Connecting and filling vertices in path at fillseed 79935 Finding path......................................................................................................................... done Filling 79935 nlabel 1263 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035701.label Connecting and filling vertices in path at fillseed 82156 Finding path..................................................................................................................................................................... done Filling 82156 nlabel 5297 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035801.label Connecting and filling vertices in path at fillseed 88519 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 88519 nlabel 9638 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035901.label Connecting and filling vertices in path at fillseed 88042 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 88042 nlabel 11796 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036001.label Connecting and filling vertices in path at fillseed 86350 Finding path.................................................................................................................................................................................................... done Filling 86350 nlabel 2891 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036101.label Connecting and filling vertices in path at fillseed 79923 Finding path........................................................................................................................................................................................................................... done Filling 79923 nlabel 4637 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036201.label Connecting and filling vertices in path at fillseed 90080 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 90080 nlabel 127353 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036301.label Connecting and filling vertices in path at fillseed 88704 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 88704 nlabel 11546 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036401.label Connecting and filling vertices in path at fillseed 88578 Finding path................................................................................................................................................................. done Filling 88578 nlabel 5062 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036501.label Connecting and filling vertices in path at fillseed 90870 Finding path......................................................................................................................................................................................................... done Filling 90870 nlabel 5458 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036601.label Connecting and filling vertices in path at fillseed 88209 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 88209 nlabel 4293 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036701.label Connecting and filling vertices in path at fillseed 88518 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 88518 nlabel 9739 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036801.label Connecting and filling vertices in path at fillseed 88778 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 88778 nlabel 12275 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036901.label Connecting and filling vertices in path at fillseed 87435 Finding path.......................................................................................................................................................................................... done Filling 87435 nlabel 3039 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037001.label Connecting and filling vertices in path at fillseed 92922 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 92922 nlabel 5689 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037101.label Connecting and filling vertices in path at fillseed 84303 Finding path................................................................................................................................................................................................................................................................................................................................................................................ done Filling 84303 nlabel 6870 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037201.label Connecting and filling vertices in path at fillseed 86659 Finding path............................................................................................................................................................................................................................................................................................................................................ done Filling 86659 nlabel 7945 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037301.label Connecting and filling vertices in path at fillseed 81040 Finding path............................................................... done Filling 81040 nlabel 1636 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037401.label Connecting and filling vertices in path at fillseed 90877 Finding path......................................................................................................................................................................................................................................................................... done Filling 90877 nlabel 5474 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037501.label Connecting and filling vertices in path at fillseed 89165 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 89165 nlabel 4336 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037601.label Connecting and filling vertices in path at fillseed 91416 Finding path.................................................................................................................................................................................................................................................................................................................................... done Filling 91416 nlabel 7738 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037701.label Connecting and filling vertices in path at fillseed 90790 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 90790 nlabel 12395 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037801.label Connecting and filling vertices in path at fillseed 92711 Finding path............................................................................................................................................................................. done Filling 92711 nlabel 5116 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037901.label Connecting and filling vertices in path at fillseed 78916 Finding path............................................................................................................................................................................................. done Filling 78916 nlabel 4763 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038001.label Connecting and filling vertices in path at fillseed 91050 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 91050 nlabel 126142 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038101.label Connecting and filling vertices in path at fillseed 93397 Finding path................................................................................................................................................................................................................................................................................................................................................................. done Filling 93397 nlabel 7934 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038201.label Connecting and filling vertices in path at fillseed 82141 Finding path...................................................................... done Filling 82141 nlabel 2214 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038301.label Connecting and filling vertices in path at fillseed 79936 Finding path...................................................... done Filling 79936 nlabel 1369 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038401.label Connecting and filling vertices in path at fillseed 129349 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 129349 nlabel 4135 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038501.label Connecting and filling vertices in path at fillseed 91955 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 91955 nlabel 6042 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038601.label Connecting and filling vertices in path at fillseed 91819 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 91819 nlabel 121128 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038701.label Connecting and filling vertices in path at fillseed 95720 Finding path................................................................................................................................................................................. done Filling 95720 nlabel 5778 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038801.label Connecting and filling vertices in path at fillseed 94261 Finding path.................................................................................................................................................................. done Filling 94261 nlabel 4768 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038901.label Connecting and filling vertices in path at fillseed 93058 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 93058 nlabel 510 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039001.label Connecting and filling vertices in path at fillseed 91673 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 91673 nlabel 12082 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039101.label Connecting and filling vertices in path at fillseed 95619 Finding path................................................................................................................................................................................... done Filling 95619 nlabel 4604 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039201.label Connecting and filling vertices in path at fillseed 78928 Finding path................................................................................................................................................................................................ done Filling 78928 nlabel 4695 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039301.label Connecting and filling vertices in path at fillseed 97250 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 97250 nlabel 5451 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039401.label Connecting and filling vertices in path at fillseed 88712 Finding path.......................................................................................................................................................................................................................................................................................................................................... done Filling 88712 nlabel 7705 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039501.label Connecting and filling vertices in path at fillseed 95525 Finding path............................................................................................................................................................ done Filling 95525 nlabel 4986 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039601.label Connecting and filling vertices in path at fillseed 98670 Finding path................................................................................................................................................................................................................................................................................................................................................................................. done Filling 98670 nlabel 6107 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039701.label Connecting and filling vertices in path at fillseed 98162 Finding path........................................................................................................................................................................................................................................................... done Filling 98162 nlabel 4914 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039801.label Connecting and filling vertices in path at fillseed 93395 Finding path...................................................................................................................................................................................................................................................................................................................................................................................... done Filling 93395 nlabel 8139 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039901.label Connecting and filling vertices in path at fillseed 97468 Finding path......................................................................................................... done Filling 97468 nlabel 4891 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040001.label Connecting and filling vertices in path at fillseed 97661 Finding path............................................................................................................................................................................................................................................................................................ done Filling 97661 nlabel 5900 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040101.label Connecting and filling vertices in path at fillseed 95250 Finding path........................................................................................................................................................................................................................... done Filling 95250 nlabel 4974 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040201.label Connecting and filling vertices in path at fillseed 97266 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 97266 nlabel 8411 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040301.label Connecting and filling vertices in path at fillseed 92621 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 92621 nlabel 12835 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040401.label Connecting and filling vertices in path at fillseed 97441 Finding path.................................................................................................................................................................................... done Filling 97441 nlabel 4185 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040501.label Connecting and filling vertices in path at fillseed 99522 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 99522 nlabel 5713 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040601.label Connecting and filling vertices in path at fillseed 98162 Finding path................................................................................................................................................................................................................................................................................................................... done Filling 98162 nlabel 4979 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040701.label Connecting and filling vertices in path at fillseed 96395 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 96395 nlabel 7185 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040801.label Connecting and filling vertices in path at fillseed 93681 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 93681 nlabel 14493 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040901.label Connecting and filling vertices in path at fillseed 100484 Finding path............................................. done Filling 100484 nlabel 1509 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041001.label Connecting and filling vertices in path at fillseed 101847 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 101847 nlabel 126088 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041101.label Connecting and filling vertices in path at fillseed 98171 Finding path.................................................................................................................................................................................................................................................................................................................................................................................... done Filling 98171 nlabel 5781 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041201.label Connecting and filling vertices in path at fillseed 92708 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 92708 nlabel 14245 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041301.label Connecting and filling vertices in path at fillseed 101277 Finding path...................................................................................... done Filling 101277 nlabel 2413 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041401.label Connecting and filling vertices in path at fillseed 98113 Finding path............................................................................................................................................................................................. done Filling 98113 nlabel 3616 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041501.label Connecting and filling vertices in path at fillseed 98162 Finding path.................................................................................................................................................................................................................................................................................................................. done Filling 98162 nlabel 4089 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041601.label Connecting and filling vertices in path at fillseed 97793 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 97793 nlabel 123076 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041701.label Connecting and filling vertices in path at fillseed 98239 Finding path...................................................................................................................................... done Filling 98239 nlabel 4540 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041801.label Connecting and filling vertices in path at fillseed 100485 Finding path..................................................... done Filling 100485 nlabel 1524 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041901.label Connecting and filling vertices in path at fillseed 101855 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 101855 nlabel 126617 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042001.label Connecting and filling vertices in path at fillseed 100311 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 100311 nlabel 126704 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042101.label Connecting and filling vertices in path at fillseed 95808 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 95808 nlabel 120606 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042201.label Connecting and filling vertices in path at fillseed 101276 Finding path............................................................... done Filling 101276 nlabel 1466 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042301.label Connecting and filling vertices in path at fillseed 103334 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 103334 nlabel 4219 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042401.label Connecting and filling vertices in path at fillseed 99594 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 99594 nlabel 124746 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042501.label Connecting and filling vertices in path at fillseed 100818 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 100818 nlabel 13151 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042601.label Connecting and filling vertices in path at fillseed 102247 Finding path.......................................................................................................................................... done Filling 102247 nlabel 4206 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042701.label Connecting and filling vertices in path at fillseed 101033 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 101033 nlabel 5844 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042801.label Connecting and filling vertices in path at fillseed 98162 Finding path................................................................................................................................................................................................................................................................................................................................................. done Filling 98162 nlabel 4357 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042901.label Connecting and filling vertices in path at fillseed 103750 Finding path............................................................................................................................................................................................................................................................................................................................................................... done Filling 103750 nlabel 8542 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043001.label Connecting and filling vertices in path at fillseed 101275 Finding path............................................. done Filling 101275 nlabel 1632 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043101.label Connecting and filling vertices in path at fillseed 103245 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 103245 nlabel 7596 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043201.label Connecting and filling vertices in path at fillseed 129445 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 129445 nlabel 125986 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043301.label Connecting and filling vertices in path at fillseed 99092 Finding path................................................................................................................................................................................................................................................................................................................................... done Filling 99092 nlabel 7651 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043401.label Connecting and filling vertices in path at fillseed 103549 Finding path................................................................................................................................................... done Filling 103549 nlabel 3244 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043501.label Connecting and filling vertices in path at fillseed 101279 Finding path.......................................................................................... done Filling 101279 nlabel 1637 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043601.label Connecting and filling vertices in path at fillseed 129472 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 129472 nlabel 126555 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043701.label Connecting and filling vertices in path at fillseed 129675 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 129675 nlabel 7293 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043801.label Connecting and filling vertices in path at fillseed 104689 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 104689 nlabel 11235 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043901.label Connecting and filling vertices in path at fillseed 104699 Finding path....................................................................................................................................................................................................................................................................................................... done Filling 104699 nlabel 6148 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044001.label Connecting and filling vertices in path at fillseed 99750 Finding path........................................................................................................................................................................................................................................ done Filling 99750 nlabel 3962 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044101.label Connecting and filling vertices in path at fillseed 98171 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 98171 nlabel 6667 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044201.label Connecting and filling vertices in path at fillseed 105205 Finding path.................................................................................................................................................................................................................................. done Filling 105205 nlabel 7501 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044301.label Connecting and filling vertices in path at fillseed 105663 Finding path........................................................................................................................................................ done Filling 105663 nlabel 2635 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044401.label Connecting and filling vertices in path at fillseed 101280 Finding path................................................................................................................. done Filling 101280 nlabel 2002 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044501.label Connecting and filling vertices in path at fillseed 98162 Finding path.......................................................................................................................................................................................................................................................................................... done Filling 98162 nlabel 4585 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044601.label Connecting and filling vertices in path at fillseed 99877 Finding path......................................................................................................................................................................................................................................................................................... done Filling 99877 nlabel 8330 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044701.label Connecting and filling vertices in path at fillseed 104721 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 104721 nlabel 12054 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044801.label Connecting and filling vertices in path at fillseed 106878 Finding path............................................................................................................................................................................................................................................................................................................................................................................................ done Filling 106878 nlabel 7023 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044901.label Connecting and filling vertices in path at fillseed 107071 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 107071 nlabel 8066 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045001.label Connecting and filling vertices in path at fillseed 98162 Finding path.................................................................................................................................................................................................................................. done Filling 98162 nlabel 4135 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045101.label Connecting and filling vertices in path at fillseed 106662 Finding path........................................................................................................................................................................................................................................... done Filling 106662 nlabel 8504 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045201.label Connecting and filling vertices in path at fillseed 105753 Finding path.................................................................................................................. done Filling 105753 nlabel 3346 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045301.label Connecting and filling vertices in path at fillseed 102735 Finding path................................................................................ done Filling 102735 nlabel 1466 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045401.label Connecting and filling vertices in path at fillseed 99759 Finding path.................................................................................................................................................................................................................................... done Filling 99759 nlabel 4345 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045501.label Connecting and filling vertices in path at fillseed 106357 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 106357 nlabel 123925 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045601.label Connecting and filling vertices in path at fillseed 106114 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 106114 nlabel 9001 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045701.label Connecting and filling vertices in path at fillseed 104279 Finding path.......................................................................... done Filling 104279 nlabel 1523 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045801.label Connecting and filling vertices in path at fillseed 108515 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 108515 nlabel 10565 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045901.label Connecting and filling vertices in path at fillseed 99031 Finding path................................................................................................................................................................................................ done Filling 99031 nlabel 4812 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046001.label Connecting and filling vertices in path at fillseed 106848 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 106848 nlabel 11634 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046101.label Connecting and filling vertices in path at fillseed 107228 Finding path.............................................................................................................................. done Filling 107228 nlabel 2847 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046201.label Connecting and filling vertices in path at fillseed 107744 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 107744 nlabel 9120 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046301.label Connecting and filling vertices in path at fillseed 106379 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 106379 nlabel 125521 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046401.label Connecting and filling vertices in path at fillseed 107360 Finding path............................................................................................................................................................................................................................................ done Filling 107360 nlabel 8414 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046501.label Connecting and filling vertices in path at fillseed 107961 Finding path......................................................................................................................... done Filling 107961 nlabel 3521 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046601.label Connecting and filling vertices in path at fillseed 109684 Finding path.................................................................................................................................................................................................................................................................... done Filling 109684 nlabel 7474 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046701.label Connecting and filling vertices in path at fillseed 103532 Finding path.................................................................................................................................................................................................................... done Filling 103532 nlabel 4729 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046801.label Connecting and filling vertices in path at fillseed 107350 Finding path.......................................................................................................................................................................................................................................................... done Filling 107350 nlabel 8340 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046901.label Connecting and filling vertices in path at fillseed 107573 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 107573 nlabel 9322 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047001.label Connecting and filling vertices in path at fillseed 109617 Finding path......................................................................................................................................................................................................................................................................................................................................................................... done Filling 109617 nlabel 7286 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047101.label Connecting and filling vertices in path at fillseed 103518 Finding path............................................................................................................................................... done Filling 103518 nlabel 2132 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047201.label Connecting and filling vertices in path at fillseed 105727 Finding path................................................................................................................................................................................................................. done Filling 105727 nlabel 5045 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047301.label Connecting and filling vertices in path at fillseed 110226 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 110226 nlabel 8670 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047401.label Connecting and filling vertices in path at fillseed 106757 Finding path............................................................................................................................................................................................................................................................... done Filling 106757 nlabel 7426 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047501.label Connecting and filling vertices in path at fillseed 111484 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 111484 nlabel 9564 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047601.label Connecting and filling vertices in path at fillseed 104300 Finding path............................................................................................................................................................................................................................................................. done Filling 104300 nlabel 4896 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047701.label Connecting and filling vertices in path at fillseed 112371 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 112371 nlabel 7756 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047801.label Connecting and filling vertices in path at fillseed 111845 Finding path............................................................................................................................... done Filling 111845 nlabel 3166 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047901.label Connecting and filling vertices in path at fillseed 111484 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 111484 nlabel 9384 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048001.label Connecting and filling vertices in path at fillseed 130111 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 130111 nlabel 5062 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048101.label Connecting and filling vertices in path at fillseed 112976 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 112976 nlabel 7751 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048201.label Connecting and filling vertices in path at fillseed 106475 Finding path........................................................................................... done Filling 106475 nlabel 1847 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048301.label Connecting and filling vertices in path at fillseed 111525 Finding path............................................................................................................................................................................................................................................................ done Filling 111525 nlabel 8882 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048401.label Connecting and filling vertices in path at fillseed 105727 Finding path...................................................................................................................................................................................................................................... done Filling 105727 nlabel 4922 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048501.label Connecting and filling vertices in path at fillseed 114153 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 114153 nlabel 9716 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048601.label Connecting and filling vertices in path at fillseed 112552 Finding path........................................................................................................................... done Filling 112552 nlabel 4015 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048701.label Connecting and filling vertices in path at fillseed 112173 Finding path................................................................................................................................................................................................................. done Filling 112173 nlabel 8437 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048801.label Connecting and filling vertices in path at fillseed 104300 Finding path....................................................................................................................................................................................................................................................................................................................... done Filling 104300 nlabel 3298 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048901.label Connecting and filling vertices in path at fillseed 108013 Finding path.......................................................................................................................................................................................................................................................................................................................... done Filling 108013 nlabel 5489 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049001.label Connecting and filling vertices in path at fillseed 112511 Finding path........................................................................................................... done Filling 112511 nlabel 3199 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049101.label Connecting and filling vertices in path at fillseed 112835 Finding path...................................................................................................................................................................................................................................................................................................... done Filling 112835 nlabel 9485 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049201.label Connecting and filling vertices in path at fillseed 112455 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 112455 nlabel 8851 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049301.label Connecting and filling vertices in path at fillseed 113566 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 113566 nlabel 3909 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049401.label Connecting and filling vertices in path at fillseed 112709 Finding path................................................................................................................................................................................................................................................................................................................................................... done Filling 112709 nlabel 7874 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049501.label Connecting and filling vertices in path at fillseed 111063 Finding path.............................................................................................................. done Filling 111063 nlabel 2391 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049601.label Connecting and filling vertices in path at fillseed 114210 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 114210 nlabel 9525 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049701.label Connecting and filling vertices in path at fillseed 105727 Finding path................................................................................................................................................................................................................................. done Filling 105727 nlabel 3499 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049801.label Connecting and filling vertices in path at fillseed 114744 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 114744 nlabel 9541 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049901.label Connecting and filling vertices in path at fillseed 108635 Finding path.............................................................................................................. done Filling 108635 nlabel 1327 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050001.label Connecting and filling vertices in path at fillseed 114754 Finding path................................................................................................................................................................................................................................ done Filling 114754 nlabel 8623 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050101.label Connecting and filling vertices in path at fillseed 113066 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 113066 nlabel 9145 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050201.label Connecting and filling vertices in path at fillseed 113596 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 113596 nlabel 6496 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050301.label Connecting and filling vertices in path at fillseed 109511 Finding path............................................................................................................................................................................................................................................................................................................................................................ done Filling 109511 nlabel 8163 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050401.label Connecting and filling vertices in path at fillseed 113357 Finding path................................................................................................................................................................................................................................................................................................................................................................... done Filling 113357 nlabel 8809 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050501.label Connecting and filling vertices in path at fillseed 105689 Finding path......................................................................................................................................................... done Filling 105689 nlabel 2289 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050601.label Connecting and filling vertices in path at fillseed 107310 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 107310 nlabel 4569 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050701.label Connecting and filling vertices in path at fillseed 114718 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 114718 nlabel 9929 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050801.label Connecting and filling vertices in path at fillseed 115128 Finding path................................................................................................................................................. done Filling 115128 nlabel 4160 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050901.label Connecting and filling vertices in path at fillseed 114808 Finding path............................................................................................................................................................................................................................................................................................... done Filling 114808 nlabel 10121 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051001.label Connecting and filling vertices in path at fillseed 111813 Finding path.................................................................................................................................................... done Filling 111813 nlabel 3747 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051101.label Connecting and filling vertices in path at fillseed 108718 Finding path.............................................................................................................................................................................................................................................................. done Filling 108718 nlabel 5410 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051201.label Connecting and filling vertices in path at fillseed 113299 Finding path.............................................................................................................................................................................................................................................................................................................................................. done Filling 113299 nlabel 6952 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051301.label Connecting and filling vertices in path at fillseed 115461 Finding path..................................................................................................................................................................................................................................................... done Filling 115461 nlabel 8538 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051401.label Connecting and filling vertices in path at fillseed 130170 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 130170 nlabel 8571 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051501.label Connecting and filling vertices in path at fillseed 108718 Finding path.............................................................................................................................................................................................................................................. done Filling 108718 nlabel 5374 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051601.label Connecting and filling vertices in path at fillseed 115834 Finding path..................................................................................................................................... done Filling 115834 nlabel 3965 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051701.label Connecting and filling vertices in path at fillseed 114754 Finding path.................................................................................................................................................................................................................... done Filling 114754 nlabel 9138 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051801.label Connecting and filling vertices in path at fillseed 130171 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 130171 nlabel 8446 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051901.label Connecting and filling vertices in path at fillseed 114943 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 114943 nlabel 10743 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052001.label Connecting and filling vertices in path at fillseed 114820 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 114820 nlabel 8232 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052101.label Connecting and filling vertices in path at fillseed 114510 Finding path..................................................................................................................... done Filling 114510 nlabel 4567 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052201.label Connecting and filling vertices in path at fillseed 110419 Finding path...................................................... done Filling 110419 nlabel 1145 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052301.label Connecting and filling vertices in path at fillseed 118350 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 118350 nlabel 9831 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052401.label Connecting and filling vertices in path at fillseed 115611 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 115611 nlabel 9501 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052501.label Connecting and filling vertices in path at fillseed 118305 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 118305 nlabel 11664 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052601.label Connecting and filling vertices in path at fillseed 117606 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 117606 nlabel 7087 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052701.label Connecting and filling vertices in path at fillseed 115959 Finding path................................................................................................................... done Filling 115959 nlabel 5100 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052801.label Connecting and filling vertices in path at fillseed 111069 Finding path...................................................................................................................................... done Filling 111069 nlabel 2411 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052901.label Connecting and filling vertices in path at fillseed 118945 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 118945 nlabel 11508 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053001.label Connecting and filling vertices in path at fillseed 116726 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 116726 nlabel 4509 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053101.label Connecting and filling vertices in path at fillseed 113085 Finding path............................................................. done Filling 113085 nlabel 1447 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053201.label Connecting and filling vertices in path at fillseed 118350 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 118350 nlabel 8758 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053301.label Connecting and filling vertices in path at fillseed 116879 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 116879 nlabel 7038 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053401.label Connecting and filling vertices in path at fillseed 117455 Finding path..................................................................................................................................................................................................................................................................................... done Filling 117455 nlabel 8423 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053501.label Connecting and filling vertices in path at fillseed 121143 Finding path............................................................................................................................................................................................................................................................. done Filling 121143 nlabel 9075 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053601.label Connecting and filling vertices in path at fillseed 116897 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 116897 nlabel 7410 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053701.label Connecting and filling vertices in path at fillseed 118246 Finding path.................................................................................................................................................................................................................................................................................................................................... done Filling 118246 nlabel 8708 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053801.label Connecting and filling vertices in path at fillseed 113099 Finding path......................................................................................................................................... done Filling 113099 nlabel 3880 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053901.label Connecting and filling vertices in path at fillseed 116897 Finding path....................................................................................................................................................................................................................................................... done Filling 116897 nlabel 5580 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054001.label Connecting and filling vertices in path at fillseed 118265 Finding path........................................................................................................................................................................................................................... done Filling 118265 nlabel 8561 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054101.label Connecting and filling vertices in path at fillseed 121087 Finding path...................................................................................................................................................................................................................... done Filling 121087 nlabel 9106 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054201.label Connecting and filling vertices in path at fillseed 115157 Finding path............................................................................................................................................................................................................................................................ done Filling 115157 nlabel 5392 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054301.label Connecting and filling vertices in path at fillseed 118165 Finding path........................................................................................................................................................................................................................................................................................... done Filling 118165 nlabel 8358 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054401.label Connecting and filling vertices in path at fillseed 117886 Finding path....................................................................................................................... done Filling 117886 nlabel 3770 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054501.label Connecting and filling vertices in path at fillseed 117986 Finding path.................................................................................................................................................................................. done Filling 117986 nlabel 5358 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054601.label Connecting and filling vertices in path at fillseed 120249 Finding path........................................................................................... done Filling 120249 nlabel 3961 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054701.label Connecting and filling vertices in path at fillseed 121642 Finding path............................................................................................................................................................................................................................................. done Filling 121642 nlabel 9982 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054801.label Connecting and filling vertices in path at fillseed 118668 Finding path......................................................................................................................................................................................................................................... done Filling 118668 nlabel 5759 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054901.label Connecting and filling vertices in path at fillseed 119746 Finding path............................................................................................................. done Filling 119746 nlabel 3746 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055001.label Connecting and filling vertices in path at fillseed 121641 Finding path................................................................................................................................................................................................................................................. done Filling 121641 nlabel 9854 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055101.label Connecting and filling vertices in path at fillseed 117986 Finding path..................................................................................................................................................................................................... done Filling 117986 nlabel 5697 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055201.label Connecting and filling vertices in path at fillseed 120756 Finding path......................................................................................................... done Filling 120756 nlabel 3320 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055301.label Connecting and filling vertices in path at fillseed 117167 Finding path............................................................................................................................................ done Filling 117167 nlabel 2560 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055401.label Connecting and filling vertices in path at fillseed 122600 Finding path................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 122600 nlabel 7895 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055501.label Connecting and filling vertices in path at fillseed 120225 Finding path............................................................................................................ done Filling 120225 nlabel 2616 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055601.label Connecting and filling vertices in path at fillseed 117876 Finding path.............................................................. done Filling 117876 nlabel 1531 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055701.label Connecting and filling vertices in path at fillseed 115810 Finding path................................................................................................................................................. done Filling 115810 nlabel 4700 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055801.label Connecting and filling vertices in path at fillseed 122486 Finding path............................................................................................................................................................................................................................................................ done Filling 122486 nlabel 4516 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055901.label Connecting and filling vertices in path at fillseed 121281 Finding path....................................................................................................... done Filling 121281 nlabel 2641 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056001.label Connecting and filling vertices in path at fillseed 118564 Finding path...................................................................................................................... done Filling 118564 nlabel 3821 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056101.label Connecting and filling vertices in path at fillseed 123105 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 123105 nlabel 7148 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056201.label Connecting and filling vertices in path at fillseed 123978 Finding path........................................................................................................................................................................................................................ done Filling 123978 nlabel 4264 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056301.label Connecting and filling vertices in path at fillseed 117878 Finding path............................................................ done Filling 117878 nlabel 1348 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056401.label Connecting and filling vertices in path at fillseed 117895 Finding path............................................................................................................................................. done Filling 117895 nlabel 4569 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056501.label Connecting and filling vertices in path at fillseed 119830 Finding path......................................................................................................................................................................................................................................................................................................... done Filling 119830 nlabel 5860 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056601.label Connecting and filling vertices in path at fillseed 124464 Finding path......................................................................................................................................................................................................................................................................................................... done Filling 124464 nlabel 5863 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056701.label Connecting and filling vertices in path at fillseed 117892 Finding path............................................................................................................................... done Filling 117892 nlabel 3855 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056801.label Connecting and filling vertices in path at fillseed 119262 Finding path......................................................................................................................................................................................... done Filling 119262 nlabel 5722 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.056901.label Connecting and filling vertices in path at fillseed 120738 Finding path........................................................................................................................ done Filling 120738 nlabel 1910 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057001.label Connecting and filling vertices in path at fillseed 125670 Finding path...................................................................................................................................................................................................................................................... done Filling 125670 nlabel 8159 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057101.label Connecting and filling vertices in path at fillseed 120265 Finding path..................................................................................................................................................................................... done Filling 120265 nlabel 5527 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057201.label Connecting and filling vertices in path at fillseed 123523 Finding path................................................................................................................................................................................................................................................................. done Filling 123523 nlabel 5583 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057301.label Connecting and filling vertices in path at fillseed 125417 Finding path...................................................................................................................................................................................................... done Filling 125417 nlabel 3810 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057401.label Connecting and filling vertices in path at fillseed 117187 Finding path.................................................................................................................................................... done Filling 117187 nlabel 5018 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057501.label Connecting and filling vertices in path at fillseed 123534 Finding path...................................................................................................................................................................................................................................................................... done Filling 123534 nlabel 5109 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057601.label Connecting and filling vertices in path at fillseed 125861 Finding path.......................................................................................................... done Filling 125861 nlabel 4058 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057701.label Connecting and filling vertices in path at fillseed 117895 Finding path...................................................................................................................................... done Filling 117895 nlabel 5119 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057801.label Connecting and filling vertices in path at fillseed 123523 Finding path......................................................................................................................................................................................................................................................................... done Filling 123523 nlabel 4342 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.057901.label Connecting and filling vertices in path at fillseed 118553 Finding path........................................................... done Filling 118553 nlabel 1275 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058001.label Connecting and filling vertices in path at fillseed 125966 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 125966 nlabel 8405 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058101.label Connecting and filling vertices in path at fillseed 124859 Finding path....................................................................................................................... done Filling 124859 nlabel 2459 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058201.label Connecting and filling vertices in path at fillseed 118561 Finding path............................................... done Filling 118561 nlabel 1594 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058301.label Connecting and filling vertices in path at fillseed 125977 Finding path............................................................................................................................................................................................................................................................................................................................................................................................ done Filling 125977 nlabel 7062 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058401.label Connecting and filling vertices in path at fillseed 126650 Finding path.................................................................................................................................................... done Filling 126650 nlabel 3919 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058501.label Connecting and filling vertices in path at fillseed 122847 Finding path......................................................................................................................................................................................... done Filling 122847 nlabel 3336 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058601.label Connecting and filling vertices in path at fillseed 124480 Finding path................................................................................................................................................................................................................................................................................................................. done Filling 124480 nlabel 5205 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058701.label Connecting and filling vertices in path at fillseed 127103 Finding path....................................................................................................................................................................................................................................................................................................................................................................... done Filling 127103 nlabel 5449 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058801.label Connecting and filling vertices in path at fillseed 120783 Finding path........................................................................................................................................................... done Filling 120783 nlabel 4757 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.058901.label Connecting and filling vertices in path at fillseed 120742 Finding path....................................................................................................................................... done Filling 120742 nlabel 1690 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059001.label Connecting and filling vertices in path at fillseed 127071 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................. done Filling 127071 nlabel 8370 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059101.label Connecting and filling vertices in path at fillseed 125517 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 125517 nlabel 7739 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059201.label Connecting and filling vertices in path at fillseed 120743 Finding path................................................. done Filling 120743 nlabel 1251 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059301.label Connecting and filling vertices in path at fillseed 127031 Finding path............................................................................................................................................................................................................................................................................................................................................................................... done Filling 127031 nlabel 6293 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059401.label Connecting and filling vertices in path at fillseed 125949 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 125949 nlabel 3989 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059501.label Connecting and filling vertices in path at fillseed 127950 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 127950 nlabel 5916 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059601.label Connecting and filling vertices in path at fillseed 123412 Finding path................................................................................................................................................................................... done Filling 123412 nlabel 4665 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059701.label Connecting and filling vertices in path at fillseed 125502 Finding path......................................................................................................................................................................................................................... done Filling 125502 nlabel 3300 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059801.label Connecting and filling vertices in path at fillseed 127679 Finding path............................................................................................................................................................................................................................................................................................................................................................................... done Filling 127679 nlabel 5995 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.059901.label Connecting and filling vertices in path at fillseed 122896 Finding path......................................................................................................................................................................................... done Filling 122896 nlabel 4152 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060001.label Connecting and filling vertices in path at fillseed 127530 Finding path..................................................................................................................................................................................................................................... done Filling 127530 nlabel 3130 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060101.label Connecting and filling vertices in path at fillseed 123362 Finding path................................................................................................................................................................ done Filling 123362 nlabel 1945 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060201.label Connecting and filling vertices in path at fillseed 125962 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 125962 nlabel 2692 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060301.label Connecting and filling vertices in path at fillseed 127897 Finding path................................................................................................................................................................................................................................................ done Filling 127897 nlabel 127990 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060401.label Connecting and filling vertices in path at fillseed 127917 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 127917 nlabel 4286 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060501.label Connecting and filling vertices in path at fillseed 123399 Finding path........................................................................................................................................................................ done Filling 123399 nlabel 3993 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060601.label Connecting and filling vertices in path at fillseed 128258 Finding path................................................................................................................................................................................................................. done Filling 128258 nlabel 2710 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060701.label Connecting and filling vertices in path at fillseed 127882 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................. done Filling 127882 nlabel 3573 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060801.label Connecting and filling vertices in path at fillseed 125501 Finding path............................................................................................................................................................................................ done Filling 125501 nlabel 2963 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.060901.label Connecting and filling vertices in path at fillseed 125348 Finding path....................................................................................... done Filling 125348 nlabel 1160 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061001.label Connecting and filling vertices in path at fillseed 124889 Finding path.................................................................................................................................................. done Filling 124889 nlabel 3190 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061101.label Connecting and filling vertices in path at fillseed 126972 Finding path................................................................................................................................................................. done Filling 126972 nlabel 3553 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061201.label Connecting and filling vertices in path at fillseed 125827 Finding path.............................................................. done Filling 125827 nlabel 1440 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061301.label Connecting and filling vertices in path at fillseed 125832 Finding path.......................................................... done Filling 125832 nlabel 1482 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061401.label Connecting and filling vertices in path at fillseed 126983 Finding path................................................................................................................................................................................................................................................................................................................. done Filling 126983 nlabel 2903 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061501.label Connecting and filling vertices in path at fillseed 128420 Finding path................................................................................................................................................................................................................................................................ done Filling 128420 nlabel 128451 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061601.label Connecting and filling vertices in path at fillseed 124898 Finding path............................................................................................................................................ done Filling 124898 nlabel 3224 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061701.label Connecting and filling vertices in path at fillseed 128259 Finding path........................................................................................................................................................................................................................... done Filling 128259 nlabel 2497 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061801.label Connecting and filling vertices in path at fillseed 126266 Finding path................................................................................................................................................................................................ done Filling 126266 nlabel 2885 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.061901.label Connecting and filling vertices in path at fillseed 126972 Finding path............................................................................................................................................................ done Filling 126972 nlabel 2944 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062001.label Connecting and filling vertices in path at fillseed 128406 Finding path.......................................................................................................................................................................................................................................................................................................... done Filling 128406 nlabel 2201 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062101.label Connecting and filling vertices in path at fillseed 127552 Finding path............................................................................................................................... done Filling 127552 nlabel 3074 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062201.label Connecting and filling vertices in path at fillseed 126636 Finding path..................................................................................................... done Filling 126636 nlabel 1818 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062301.label Connecting and filling vertices in path at fillseed 128265 Finding path........................................................................................................................................................................................................................................................................ done Filling 128265 nlabel 1929 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062401.label Connecting and filling vertices in path at fillseed 127837 Finding path........................................................................................ done Filling 127837 nlabel 1800 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062501.label Connecting and filling vertices in path at fillseed 126631 Finding path................................................................................ done Filling 126631 nlabel 1812 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062601.label Connecting and filling vertices in path at fillseed 128079 Finding path................................................................................................................................................. done Filling 128079 nlabel 2406 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062701.label Connecting and filling vertices in path at fillseed 127526 Finding path................................................................................. done Filling 127526 nlabel 1417 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062801.label Connecting and filling vertices in path at fillseed 126636 Finding path...................................................................................................................................................................................... done Filling 126636 nlabel 2325 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.062901.label Connecting and filling vertices in path at fillseed 127848 Finding path....................................................................................................................................................... done Filling 127848 nlabel 2754 Saving label file /Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.063001.label ================= compute_lgi('lh.pial','lh.pial-outer-smoothed','/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc',100,25,'/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial'); exit ================= 2016-03-16 11:23:17.593 MATLAB_maci64[5427:d07] Can't open input server /Library/InputManagers/Inquisitor < M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> loading datas ... FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.08 sec) FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.04 sec) preparing outer mesh structure ... face 5000 / 126048 face 10000 / 126048 face 15000 / 126048 face 20000 / 126048 face 25000 / 126048 face 30000 / 126048 face 35000 / 126048 face 40000 / 126048 face 45000 / 126048 face 50000 / 126048 face 55000 / 126048 face 60000 / 126048 face 65000 / 126048 face 70000 / 126048 face 75000 / 126048 face 80000 / 126048 face 85000 / 126048 face 90000 / 126048 face 95000 / 126048 face 100000 / 126048 face 105000 / 126048 face 110000 / 126048 face 115000 / 126048 face 120000 / 126048 face 125000 / 126048 reading normals info ... mesh_outer = vertices: [63026x3 double] faces: [126048x3 double] facesOfVertex: [63026x1 struct] vertexNormal: [63026x3 double] preparing pial mesh structure ... face 5000 / 260534 face 10000 / 260534 face 15000 / 260534 face 20000 / 260534 face 25000 / 260534 face 30000 / 260534 face 35000 / 260534 face 40000 / 260534 face 45000 / 260534 face 50000 / 260534 face 55000 / 260534 face 60000 / 260534 face 65000 / 260534 face 70000 / 260534 face 75000 / 260534 face 80000 / 260534 face 85000 / 260534 face 90000 / 260534 face 95000 / 260534 face 100000 / 260534 face 105000 / 260534 face 110000 / 260534 face 115000 / 260534 face 120000 / 260534 face 125000 / 260534 face 130000 / 260534 face 135000 / 260534 face 140000 / 260534 face 145000 / 260534 face 150000 / 260534 face 155000 / 260534 face 160000 / 260534 face 165000 / 260534 face 170000 / 260534 face 175000 / 260534 face 180000 / 260534 face 185000 / 260534 face 190000 / 260534 face 195000 / 260534 face 200000 / 260534 face 205000 / 260534 face 210000 / 260534 face 215000 / 260534 face 220000 / 260534 face 225000 / 260534 face 230000 / 260534 face 235000 / 260534 face 240000 / 260534 face 245000 / 260534 face 250000 / 260534 face 255000 / 260534 face 260000 / 260534 mesh_total = vertices: [130269x3 double] faces: [260534x3 double] facesOfVertex: [130269x1 struct] ...searching for mesh edges...done (195.42 sec). loading outer area information... lGI for vertex number 1 of the outer mesh is 3.3338 ratio saved at 1 lGI for vertex number 101 of the outer mesh is 3.278 lGI for vertex number 201 of the outer mesh is 4.8672 lGI for vertex number 301 of the outer mesh is 4.7987 lGI for vertex number 401 of the outer mesh is 3.006 lGI for vertex number 501 of the outer mesh is 2.9033 lGI for vertex number 601 of the outer mesh is 4.4632 lGI for vertex number 701 of the outer mesh is 3.4515 lGI for vertex number 801 of the outer mesh is 4.5538 lGI for vertex number 901 of the outer mesh is 2.5336 lGI for vertex number 1001 of the outer mesh is 4.5215 lGI for vertex number 1101 of the outer mesh is 2.1202 lGI for vertex number 1201 of the outer mesh is 2.7294 lGI for vertex number 1301 of the outer mesh is 3.134 lGI for vertex number 1401 of the outer mesh is 2.9425 lGI for vertex number 1501 of the outer mesh is 4.8756 lGI for vertex number 1601 of the outer mesh is 2.5597 lGI for vertex number 1701 of the outer mesh is 3.0584 lGI for vertex number 1801 of the outer mesh is 2.7153 lGI for vertex number 1901 of the outer mesh is 5.0141 lGI for vertex number 2001 of the outer mesh is 2.4731 lGI for vertex number 2101 of the outer mesh is 5.2122 lGI for vertex number 2201 of the outer mesh is 1.7094 lGI for vertex number 2301 of the outer mesh is 2.6726 lGI for vertex number 2401 of the outer mesh is 3.1909 lGI for vertex number 2501 of the outer mesh is 2.7468 lGI for vertex number 2601 of the outer mesh is 1.724 lGI for vertex number 2701 of the outer mesh is 2.237 lGI for vertex number 2801 of the outer mesh is 2.7942 lGI for vertex number 2901 of the outer mesh is 4.5717 lGI for vertex number 3001 of the outer mesh is 4.8516 lGI for vertex number 3101 of the outer mesh is 1.464 lGI for vertex number 3201 of the outer mesh is 4.4893 lGI for vertex number 3301 of the outer mesh is 3.0717 lGI for vertex number 3401 of the outer mesh is 2.4644 lGI for vertex number 3501 of the outer mesh is 1.4432 lGI for vertex number 3601 of the outer mesh is 2.3049 lGI for vertex number 3701 of the outer mesh is 2.6214 lGI for vertex number 3801 of the outer mesh is 3.3216 lGI for vertex number 3901 of the outer mesh is 2.4849 lGI for vertex number 4001 of the outer mesh is 1.3331 lGI for vertex number 4101 of the outer mesh is 5.0201 lGI for vertex number 4201 of the outer mesh is 3.7003 lGI for vertex number 4301 of the outer mesh is 3.3699 lGI for vertex number 4401 of the outer mesh is 4.7613 lGI for vertex number 4501 of the outer mesh is 1.4628 lGI for vertex number 4601 of the outer mesh is 2.5333 lGI for vertex number 4701 of the outer mesh is 4.7036 lGI for vertex number 4801 of the outer mesh is 1.2909 lGI for vertex number 4901 of the outer mesh is 1.1901 lGI for vertex number 5001 of the outer mesh is 1.3466 lGI for vertex number 5101 of the outer mesh is 2.6679 lGI for vertex number 5201 of the outer mesh is 3.5196 lGI for vertex number 5301 of the outer mesh is 2.9462 lGI for vertex number 5401 of the outer mesh is 1.4086 lGI for vertex number 5501 of the outer mesh is 2.3021 lGI for vertex number 5601 of the outer mesh is 4.1006 lGI for vertex number 5701 of the outer mesh is 2.3191 lGI for vertex number 5801 of the outer mesh is 1.1971 lGI for vertex number 5901 of the outer mesh is 5.0137 lGI for vertex number 6001 of the outer mesh is 2.7951 lGI for vertex number 6101 of the outer mesh is 3.2283 lGI for vertex number 6201 of the outer mesh is 1.1641 lGI for vertex number 6301 of the outer mesh is 1.2543 lGI for vertex number 6401 of the outer mesh is 5.9084 lGI for vertex number 6501 of the outer mesh is 3.1709 lGI for vertex number 6601 of the outer mesh is 2.0691 lGI for vertex number 6701 of the outer mesh is 4.949 lGI for vertex number 6801 of the outer mesh is 2.3428 lGI for vertex number 6901 of the outer mesh is 3.8613 lGI for vertex number 7001 of the outer mesh is 1.3504 lGI for vertex number 7101 of the outer mesh is 4.1688 lGI for vertex number 7201 of the outer mesh is 1.2399 lGI for vertex number 7301 of the outer mesh is 2.5704 lGI for vertex number 7401 of the outer mesh is 3.2496 lGI for vertex number 7501 of the outer mesh is 2.4711 lGI for vertex number 7601 of the outer mesh is 4.6347 lGI for vertex number 7701 of the outer mesh is 5.1236 lGI for vertex number 7801 of the outer mesh is 2.627 lGI for vertex number 7901 of the outer mesh is 2.8261 lGI for vertex number 8001 of the outer mesh is 5.1236 lGI for vertex number 8101 of the outer mesh is 2.6798 lGI for vertex number 8201 of the outer mesh is 3.7164 lGI for vertex number 8301 of the outer mesh is 1.2262 lGI for vertex number 8401 of the outer mesh is 5.1419 lGI for vertex number 8501 of the outer mesh is 7.1136 lGI for vertex number 8601 of the outer mesh is 2.588 lGI for vertex number 8701 of the outer mesh is 2.3467 lGI for vertex number 8801 of the outer mesh is 1.2255 lGI for vertex number 8901 of the outer mesh is 2.0167 ... remeasuring lGI value for vertex iV = 9001. It may take a few minutes. WARNING -- Problem for vertex iV = 9001, lGI value is aberrantly high (lGI=31.7692)... ...lGI computation will be stopped. This may be caused by topological defects, check mris_euler_number on the pial surface. ERROR: compute_lgi did not create output file '/Users/marco/Documents/T1s/pipelineT1/subjects/T40_OM_Post/surf/tmp-mris_compute_lgi-lh.pial/lh.pial_lgi.asc'! Darwin MacBook-Pro-di-Marco.local 13.3.0 Darwin Kernel Version 13.3.0: Tue Jun 3 21:27:35 PDT 2014; root:xnu-2422.110.17~1/RELEASE_X86_64 x86_64 recon-all -s T40_OM_Post exited with ERRORS at Wed Mar 16 11:33:39 EET 2016 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting