Dear Lilla,

I was running the mri_cvs_register with the flag --noaseg and no argument for my target template so as I understood the registration was done on the cvs template as you can see below:

mri_cvs_register--mov P01 --noaseg

After registration I got 4 files:

combined_tocvs_avg35_elreg_norm.m3z

combined_tocvs_avg35_elreg_norm_aseg.mgz

el_reg_tocvs_avg35.mgz

nlalign-norm.m3z

nlalign-norm.mgz

Is the nlalign-norm.mgz the final result of my CVS and contains contributions from ALL registration steps?

Also is the cvs atlas included in the file that you sent me some time ago called: cvs_avg35?

Thank you very much for your time and help.
Regards,
Antonella