Hi,<br><br>using version <a href="http://4.0.5."><font color="red"><b>MailScanner has detected a possible fraud attempt from "4.0.5." claiming to be</b></font> 4.0.5.</a><br><br>i used mri_extract_label on the aparc+aseg.mgz file to extract and convert labels into volume nifti files, which i can view and use outside FreeSurfer. works fine.<br>
<br>however, i have manually edited some surface labels, following the instructions found here:<br><a href="https://surfer.nmr.mgh.harvard.edu/fswiki/tksurfer_labeledit?action=fullsearch&amp;context=180&amp;value=mris_annot_to_segmentation&amp;titlesearch=Titles">https://surfer.nmr.mgh.harvard.edu/fswiki/tksurfer_labeledit?action=fullsearch&amp;context=180&amp;value=mris_annot_to_segmentation&amp;titlesearch=Titles</a><br>
<br>these instructions result in a modified .annot file, which i have. my question: what is the best way to get a nifti volume for the modified (manually edited) label? ideally, this nifti volume should be exactly the same as done with mri_extract_label except for the modified part.<br>
<br>thanks,<br>-joost<br><br>