Whu when I use "mris_anatomical_stats subjid lh", I get different result?  
Here average CT is 2.163+-0.898, while with 2 previous commands they were zeros.

number of vertices                      = 110852
total surface area                      = 71971 mm^2
total gray matter volume                = 174387 mm^3
average cortical thickness              = 2.136 mm +- 0.898 mm
average integrated rectified mean curvature     = 0.168
average integrated rectified Gaussian curvature = 0.133
folding index                           = 5368
intrinsic curvature index               = 529.3


On Thu, Apr 5, 2012 at 1:25 PM, Nooshin Zadeh <nooshin.zade@gmail.com> wrote:
Dear Freesurfer group

I want to get cortical thickness, and I am confused between using these two command lines:

mris_anatomical_stats -t subjid/surf/lh.thickness -b subjid lh 

that gives following information
    number of vertices
    total surface area (mm^2)
    total gray matter volume (mm^3)
    average cortical thickness +- standard deviation (mm)
    integrated rectified mean curvature
    integrated rectified Gaussian curvature
    folding index
    intrinsic curvature index
    structure name

110852  71971      0  0.000 0.000     0.168     0.133     5368   529.3  /Users/christine/Result_FS_Corrected/N219c/surf/lh.white

and 
mris_anatomical_stats -t subjid/label/lh.cortex.label -b subjid lh

that gives following information
    number of vertices
    total surface area (mm^2)
    total gray matter volume (mm^3)
    average cortical thickness +- standard deviation (mm)
    integrated rectified mean curvature
    integrated rectified Gaussian curvature
    folding index
    intrinsic curvature index
    structure name

110852  71971      0  0.000 0.000     0.168     0.133     5368   529.3  /Users/christine/Result_FS_Corrected/N219c/surf/lh.white.

Can you please guide me which one is the right one for measuring cortical thickness?
Why for both of them (mean+-STD) is zero?
Thanks in advance.



Best Regards
---------------------------------------------------
Nooshin N. Zadeh
Graduate Assistant

Departments of Electrical Engineering and Neurology
University of Miami







--

Best Regards
---------------------------------------------------
Nooshin N. Zadeh
Graduate Assistant

Departments of Electrical Engineering and Neurology
University of Miami