Hi all,<br><br>I&#39;m running FreeSurfer v.4.0.5 (see below) and it keeps hanging during the Fix Topology sequence while correcting defects.<br>The last few lines before it&#39;s hanging are included below - any suggestions?<br>

<br>-------- freesurfer-Linux-rh9-stable-pub-v4.0.5 --------<br>Setting up environment for FreeSurfer/FS-FAST (and FSL)<br>FREESURFER_HOME   /share/apps/freesurfer4.0.5<br>FSFAST_HOME       /share/apps/freesurfer4.0.5/fsfast<br>

FSF_OUTPUT_FORMAT nii<br>SUBJECTS_DIR      /home/pnlstaff/freesurfer/subjects<br>MNI_DIR           /share/apps/freesurfer4.0.5/mni<br>____________________________________________________________________<br>CORRECTING DEFECT 67 (vertices=117, convex hull=78)<br>

After retessellation of defect 67, euler #=27 (83599,243374,159802) : difference with theory (-19) = -46 <br><br>CORRECTING DEFECT 68 (vertices=19, convex hull=68)<br>After retessellation of defect 68, euler #=28 (83608,243425,159845) : difference with theory (-18) = -46 <br>

<br>CORRECTING DEFECT 69 (vertices=38132, convex hull=10573)<br><br>Thanks!<br>Tali<br><div id=":29x" class="tB"></div><br>-- <br>Talis M. Swisher, BA<br>Senior Research Assistant<br>Psychiatry Neuroimaging Laboratory<br>

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