I am trying to import and recon-all -i  my subject files and am getting these strange errors that I have never encountered before.

Iteration 1 Tue Jul 19 19:21:54 EDT 2016
nu_correct -clobber ./tmp.mri_nu_correct.mni.83022/nu0.mnc ./tmp.mri_nu_correct.mni.83022/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.83022/0/
defined(@array) is deprecated at /Applications/freesurfer/mni/bin/nu_estimate_np_and_em line 165.

Use of ?PATTERN? without explicit operator is deprecated at /Applications/freesurfer/mni/bin/sharpen_volume line 153.


I am trying to reconcile, having looked at various posts I see some mention of this maybe having to do with the version of perl I am using. The version I am currently running is perl 5, version 16, subversion 2 (v5.16.2). I also found other threads with mention of a similar error, and a possible fix but unsure how to implement. Can anyone please help me with this? Thanks!!

https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2013-May/029906.html

https://github.com/BIC-MNI/N3/commit/f5a9d0b07369039ac2d1b87e3eb7d73f6fbde7a1#src/NUcorrect/sharpen_volume.in