Hi Ryan, this issue should be fixed in the freesurfer development version, but as a temporary fix to get things working in v6, I would suggest disabling SIP and rerunning:

http://osxdaily.com/2015/10/05/disable-rootless-system-integrity-protection-mac-os-x/

best

Andrew

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Ryan Flores <ryan10@stanford.edu>
Reply-To: FS Help <freesurfer@nmr.mgh.harvard.edu>
Date: Monday, June 18, 2018 at 1:07 PM
To: FS Help <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Recon-all exited with errors

        External Email - Use Caution        

Dear FS developers,

I tried running recon-all using the -parallel flag over the weekend, but to my surprise they all exited with errors. I’m hoping the problem is something subtle, but I’m having trouble understanding the error log (please see attached). Can someone point out the issue? Thank you for your help.

Best,

Ryan

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Ryan Flores

Clinical Research Coordinator