Hi Rosalia,

Within the FTP interface, you need to write "put two_different_problems.txt". It seems like you only wrote the file name. Also, the example we provide is "filename.txt", make sure you write your file name - only include ".txt" if your file has that extension.

Let me know if you have any additional questions.

Best,

Bram

Bram R. Diamond, BSc

Research Technician II

Laboratory for Computational Neuroimaging

Martinos Center for Biomedical Imaging

Massachusetts General Hospital

149 13th Street 

Charlestown, MA 02129

(p): 617-726-6598

---

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Rosalia Dacosta Aguayo <rdacostaa@gmail.com>
Sent: Monday, December 3, 2018 10:54:53 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] When no control points are needed...

 

        External Email - Use Caution        

Hi Bruce,

This is the directory where I have the data:

/home/rosalia/Desktop/transfer

And I changed the directory before doing FTP...and then asked again for the directory and I wrote the same directory  and then when asked me for the name of the file, I provided the name of the file.txt

Thank you,

Rosalia

On Mon, Dec 3, 2018 at 4:51 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:

is that the right directory/path on your end?

On Mon, 3 Dec 2018, Rosalia Dacosta
Aguayo wrote:

>
>         External Email - Use Caution        
>
> Hi Bruce,
>
> Thank you for your reply.
> I am having problems when trying to upload the two files with FTP, it seems
> the problem is with the directory.
> rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop $ ftp
> surfer.nmr.mgh.harvard.edu
> Connected to surfer.nmr.mgh.harvard.edu.
> 220-This is the Martinos Center Anonymous FTP service. Use of this
> site            
> 220-shows implicit consent to our Acceptable Use Policy outlined
> at              
> 220-http://www.nmr.mgh.harvard.edu/martinos/userInfo/computer/nmr-aup.php 
?? ?        
> 220-
> 220-OPERATIONAL NOTE:  If, when doing a GET or PUT, you encounter either
> 220-
> 220-229 Entering Extended Passive Mode
> 220-
> 220-                   and nothing happens OR
> 220-
> 220-229 Entering Extended Passive Mode
> 220-500 Bad EPRT protocol.
> 220-
> 220-                  try issuing the EPSV command prior to GET or PUT.
> 220-
> 220
> Name (surfer.nmr.mgh.harvard.edu:rosalia): anonymous
> 331 Please specify the password.
> Password:
> 230 Login successful.
> Remote system type is UNIX.
> Using binary mode to transfer files.
> ftp> cd home/rosalia/Desktop/transfer
> 550 Failed to change directory.
> ftp>
>
>
> On Mon, Dec 3, 2018 at 3:50 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu>
> wrote:
>       Hi Rosalia
>
>       you always have to run autorecon3 every time autorecon2 is run
>
>       cheers
>       Bruce
>
>
>       On Mon, 3 Dec 2018, Rosalia
>       Dacosta Aguayo wrote:
>
>       >
>       >         External Email - Use Caution        
>       >
>       > Dear Bruce and Bram,
>       >
>       > After improving the pial surface for my participants, I have
>       seen that some of them do not need
>       > control points. My question is: for those ones, should I run
>       -autorecon2 and -autorecon3 or only
>       > -autorecon3.
>       >
>       > Hi Bruce and Bram, I will try to upload two problematic files.
>       When I told you that I have been
>       > editing all my participants I was referring that some of them
>       need more editing than others, and the
>       > ones that needed the less I just tried to improve the pial
>       surface not too much, but now the results
>       > are better than before.
>       >
>       > Thank you in advance for your help.Yours sincerely,
>       > Rosalia
>       >
>       >_______________________________________________
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>       Freesurfer@nmr.mgh.harvard.edu
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>
>
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