Cleaning up ----------------------- rm -r ./tmp.mris_preproc.2035230 Thu 09 Nov 2023 05:03:40 PM UTC mris_preproc done gdfRead(): reading //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd INFO: DeMeanFlag keyword not found, DeMeaning will NOT be done. Continuous Variable Means (all subjects) 0 TICV_STAND 1.47157e-10 0.997833 1 c6_de-meaned 7.61185e-09 0.997833 2 birthweight-demeaned 1.20951e-09 0.997833 3 Childedu_demeaned 1.94812e-08 0.997833 Class Size and Means of each Continuous Variable 1 ONE_MALE_left 7 0.0414 -0.1484 -0.2357 0.0199 2 ONE_MALE_right 57 0.4103 -0.1914 0.2011 0.0575 3 ONE_FEMALE_right 55 -0.2195 0.1298 0.0951 0.0439 4 ZERO_MALE_left 6 0.0192 -0.0974 -0.6417 -0.5285 5 ZERO_MALE_right 51 0.3169 -0.3284 0.0151 0.1716 6 ZERO_FEMALE_right 55 -0.5070 0.4025 -0.2176 -0.2074 INFO: gd2mtx_method is dods Reading source surface //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/fsaverage/surf/lh.white Number of vertices 163842 Number of faces 327680 Total area 65417.000000 AvgVtxArea 0.399269 AvgVtxDist 0.721953 StdVtxDist 0.195472 7.2.0 cwd /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM cmdline mri_glmfit --y lh.volume.10.mgh --fsgd //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd --C //data/Ghana_MRI_Data_lmid/StructT1/su bjDir_FS_GHANA/Contrasts/GM_FM_ONE_minus_ZERO.mtx --C //data/Ghana_MRI_Data_lmid /StructT1/subjDir_FS_GHANA/Contrasts/GM_FM_ZERO_minus_ONE.mtx --surf fsaverage l h --cortex --glmdir lh.volume.10.glmdir sysname Linux hostname teenlab machine x86_64 user lmidriga FixVertexAreaFlag = 1 UseMaskWithSmoothing 1 OneSampleGroupMean 0 y /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM/lh.volume.10.mgh logyflag 0 usedti 0 FSGD //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd labelmask //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/fsaverage/label/lh.cortex.label maskinv 0 glmdir lh.volume.10.glmdir IllCondOK 0 ReScaleX 1 DoFFx 0 Creating output directory lh.volume.10.glmdir Loading y from /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM/lh.volume.10.mgh ... done reading. INFO: gd2mtx_method is dods Saving design matrix to lh.volume.10.glmdir/Xg.dat Computing normalized matrix Normalized matrix condition is 11.6545 Matrix condition is 248.273 Found 149955 points in label. Pruning voxels by thr: 1.175494e-38 Found 139725 voxels in mask Saving mask to lh.volume.10.glmdir/mask.mgh Reshaping mriglm->mask... search space = 69472.116311 error: MatrixReadTxT: could not scan value [1][1] ERROR: loading C //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/Contrasts/GM_FM_ONE_minus_ZERO.mtx gdfRead(): reading //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd INFO: DeMeanFlag keyword not found, DeMeaning will NOT be done. Continuous Variable Means (all subjects) 0 TICV_STAND 1.47157e-10 0.997833 1 c6_de-meaned 7.61185e-09 0.997833 2 birthweight-demeaned 1.20951e-09 0.997833 3 Childedu_demeaned 1.94812e-08 0.997833 Class Size and Means of each Continuous Variable 1 ONE_MALE_left 7 0.0414 -0.1484 -0.2357 0.0199 2 ONE_MALE_right 57 0.4103 -0.1914 0.2011 0.0575 3 ONE_FEMALE_right 55 -0.2195 0.1298 0.0951 0.0439 4 ZERO_MALE_left 6 0.0192 -0.0974 -0.6417 -0.5285 5 ZERO_MALE_right 51 0.3169 -0.3284 0.0151 0.1716 6 ZERO_FEMALE_right 55 -0.5070 0.4025 -0.2176 -0.2074 INFO: gd2mtx_method is dods Reading source surface //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/fsaverage/surf/lh.white Number of vertices 163842 Number of faces 327680 Total area 65417.000000 AvgVtxArea 0.399269 AvgVtxDist 0.721953 StdVtxDist 0.195472 7.2.0 cwd /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM cmdline mri_glmfit --y lh.thickness.10.mgh --fsgd //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd --C //data/Ghana_MRI_Data_lmid/StructT1 /subjDir_FS_GHANA/Contrasts/GM_FM_ONE_minus_ZERO.mtx --C //data/Ghana_MRI_Data_l mid/StructT1/subjDir_FS_GHANA/Contrasts/GM_FM_ZERO_minus_ONE.mtx --surf fsaverag e lh --cortex --glmdir lh.thickness.10.glmdir sysname Linux hostname teenlab machine x86_64 user lmidriga FixVertexAreaFlag = 1 UseMaskWithSmoothing 1 OneSampleGroupMean 0 y /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM/lh.thickness.10.mgh logyflag 0 usedti 0 FSGD //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd labelmask //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/fsaverage/label/lh.cortex.label maskinv 0 glmdir lh.thickness.10.glmdir IllCondOK 0 ReScaleX 1 DoFFx 0 Creating output directory lh.thickness.10.glmdir Loading y from /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM/lh.thickness.10.mgh ... done reading. INFO: gd2mtx_method is dods Saving design matrix to lh.thickness.10.glmdir/Xg.dat Computing normalized matrix Normalized matrix condition is 11.6545 Matrix condition is 248.273 Found 149955 points in label. Pruning voxels by thr: 1.175494e-38 Found 139662 voxels in mask Saving mask to lh.thickness.10.glmdir/mask.mgh Reshaping mriglm->mask... search space = 69444.966835 error: MatrixReadTxT: could not scan value [1][1] ERROR: loading C //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/Contrasts/GM_FM_ONE_minus_ZERO.mtx gdfRead(): reading //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd INFO: DeMeanFlag keyword not found, DeMeaning will NOT be done. Continuous Variable Means (all subjects) 0 TICV_STAND 1.47157e-10 0.997833 1 c6_de-meaned 7.61185e-09 0.997833 2 birthweight-demeaned 1.20951e-09 0.997833 3 Childedu_demeaned 1.94812e-08 0.997833 Class Size and Means of each Continuous Variable 1 ONE_MALE_left 7 0.0414 -0.1484 -0.2357 0.0199 2 ONE_MALE_right 57 0.4103 -0.1914 0.2011 0.0575 3 ONE_FEMALE_right 55 -0.2195 0.1298 0.0951 0.0439 4 ZERO_MALE_left 6 0.0192 -0.0974 -0.6417 -0.5285 5 ZERO_MALE_right 51 0.3169 -0.3284 0.0151 0.1716 6 ZERO_FEMALE_right 55 -0.5070 0.4025 -0.2176 -0.2074 INFO: gd2mtx_method is dods Reading source surface //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/fsaverage/surf/lh.white Number of vertices 163842 Number of faces 327680 Total area 65417.000000 AvgVtxArea 0.399269 AvgVtxDist 0.721953 StdVtxDist 0.195472 7.2.0 cwd /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM cmdline mri_glmfit --y lh.volume.15.mgh --fsgd //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd --C //data/Ghana_MRI_Data_lmid/StructT1/su bjDir_FS_GHANA/Contrasts/GM_FM_ONE_minus_ZERO.mtx --C //data/Ghana_MRI_Data_lmid /StructT1/subjDir_FS_GHANA/Contrasts/GM_FM_ZERO_minus_ONE.mtx --surf fsaverage l h --cortex --glmdir lh.volume.15.glmdir sysname Linux hostname teenlab machine x86_64 user lmidriga FixVertexAreaFlag = 1 UseMaskWithSmoothing 1 OneSampleGroupMean 0 y /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM/lh.volume.15.mgh logyflag 0 usedti 0 FSGD //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd labelmask //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/fsaverage/label/lh.cortex.label maskinv 0 glmdir lh.volume.15.glmdir IllCondOK 0 ReScaleX 1 DoFFx 0 Creating output directory lh.volume.15.glmdir Loading y from /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM/lh.volume.15.mgh ... done reading. INFO: gd2mtx_method is dods Saving design matrix to lh.volume.15.glmdir/Xg.dat Computing normalized matrix Normalized matrix condition is 11.6545 Matrix condition is 248.273 Found 149955 points in label. Pruning voxels by thr: 1.175494e-38 Found 139725 voxels in mask Saving mask to lh.volume.15.glmdir/mask.mgh Reshaping mriglm->mask... search space = 69472.116311 error: MatrixReadTxT: could not scan value [1][1] ERROR: loading C //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/Contrasts/GM_FM_ONE_minus_ZERO.mtx gdfRead(): reading //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd INFO: DeMeanFlag keyword not found, DeMeaning will NOT be done. Continuous Variable Means (all subjects) 0 TICV_STAND 1.47157e-10 0.997833 1 c6_de-meaned 7.61185e-09 0.997833 2 birthweight-demeaned 1.20951e-09 0.997833 3 Childedu_demeaned 1.94812e-08 0.997833 Class Size and Means of each Continuous Variable 1 ONE_MALE_left 7 0.0414 -0.1484 -0.2357 0.0199 2 ONE_MALE_right 57 0.4103 -0.1914 0.2011 0.0575 3 ONE_FEMALE_right 55 -0.2195 0.1298 0.0951 0.0439 4 ZERO_MALE_left 6 0.0192 -0.0974 -0.6417 -0.5285 5 ZERO_MALE_right 51 0.3169 -0.3284 0.0151 0.1716 6 ZERO_FEMALE_right 55 -0.5070 0.4025 -0.2176 -0.2074 INFO: gd2mtx_method is dods Reading source surface //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/fsaverage/surf/lh.white Number of vertices 163842 Number of faces 327680 Total area 65417.000000 AvgVtxArea 0.399269 AvgVtxDist 0.721953 StdVtxDist 0.195472 7.2.0 cwd /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM cmdline mri_glmfit --y lh.thickness.15.mgh --fsgd //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd --C //data/Ghana_MRI_Data_lmid/StructT1 /subjDir_FS_GHANA/Contrasts/GM_FM_ONE_minus_ZERO.mtx --C //data/Ghana_MRI_Data_l mid/StructT1/subjDir_FS_GHANA/Contrasts/GM_FM_ZERO_minus_ONE.mtx --surf fsaverag e lh --cortex --glmdir lh.thickness.15.glmdir sysname Linux hostname teenlab machine x86_64 user lmidriga FixVertexAreaFlag = 1 UseMaskWithSmoothing 1 OneSampleGroupMean 0 y /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM/lh.thickness.15.mgh logyflag 0 usedti 0 FSGD //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd labelmask //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/fsaverage/label/lh.cortex.label maskinv 0 glmdir lh.thickness.15.glmdir IllCondOK 0 ReScaleX 1 DoFFx 0 Creating output directory lh.thickness.15.glmdir Loading y from /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM/lh.thickness.15.mgh ... done reading. INFO: gd2mtx_method is dods Saving design matrix to lh.thickness.15.glmdir/Xg.dat Computing normalized matrix Normalized matrix condition is 11.6545 Matrix condition is 248.273 Found 149955 points in label. Pruning voxels by thr: 1.175494e-38 Found 139662 voxels in mask Saving mask to lh.thickness.15.glmdir/mask.mgh Reshaping mriglm->mask... search space = 69444.966835 error: MatrixReadTxT: could not scan value [1][1] ERROR: loading C //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/Contrasts/GM_FM_ONE_minus_ZERO.mtx gdfRead(): reading //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd INFO: DeMeanFlag keyword not found, DeMeaning will NOT be done. Continuous Variable Means (all subjects) 0 TICV_STAND 1.47157e-10 0.997833 1 c6_de-meaned 7.61185e-09 0.997833 2 birthweight-demeaned 1.20951e-09 0.997833 3 Childedu_demeaned 1.94812e-08 0.997833 Class Size and Means of each Continuous Variable 1 ONE_MALE_left 7 0.0414 -0.1484 -0.2357 0.0199 2 ONE_MALE_right 57 0.4103 -0.1914 0.2011 0.0575 3 ONE_FEMALE_right 55 -0.2195 0.1298 0.0951 0.0439 4 ZERO_MALE_left 6 0.0192 -0.0974 -0.6417 -0.5285 5 ZERO_MALE_right 51 0.3169 -0.3284 0.0151 0.1716 6 ZERO_FEMALE_right 55 -0.5070 0.4025 -0.2176 -0.2074 INFO: gd2mtx_method is dods Reading source surface //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/fsav erage/surf/lh.white Number of vertices 163842 Number of faces 327680 Total area 65417.000000 AvgVtxArea 0.399269 AvgVtxDist 0.721953 StdVtxDist 0.195472 7.2.0 cwd /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM cmdline mri_glmfit --y lh.thickness.15.mgh --fsgd //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd --C //data/Ghana_MRI_Data_lmid/StructT1 /subjDir_FS_GHANA/Contrasts/GM_FM_ONE_minus_ZERO.mtx --C //data/Ghana_MRI_Data_l mid/StructT1/subjDir_FS_GHANA/Contrasts/GM_FM_ZERO_minus_ONE.mtx --surf fsaverag e lh --cortex --glmdir lh.thickness.15.glmdir sysname Linux hostname teenlab machine x86_64 user lmidriga FixVertexAreaFlag = 1 UseMaskWithSmoothing 1 OneSampleGroupMean 0 y /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM/lh.thickness.15.mgh logyflag 0 usedti 0 FSGD //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd labelmask //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/fsaverage/label/lh.cortex.label maskinv 0 glmdir lh.thickness.15.glmdir IllCondOK 0 ReScaleX 1 DoFFx 0 Creating output directory lh.thickness.15.glmdir Loading y from /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM/lh.thickness.15.mgh ... done reading. INFO: gd2mtx_method is dods Saving design matrix to lh.thickness.15.glmdir/Xg.dat Computing normalized matrix Normalized matrix condition is 11.6545 Matrix condition is 248.273 Found 149955 points in label. Pruning voxels by thr: 1.175494e-38 Found 139662 voxels in mask Saving mask to lh.thickness.15.glmdir/mask.mgh Reshaping mriglm->mask... search space = 69444.966835 error: MatrixReadTxT: could not scan value [1][1] ERROR: loading C //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/Contrasts/GM_FM_ONE_minus_ZERO.mtx gdfRead(): reading //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd INFO: DeMeanFlag keyword not found, DeMeaning will NOT be done. Continuous Variable Means (all subjects) 0 TICV_STAND 1.47157e-10 0.997833 1 c6_de-meaned 7.61185e-09 0.997833 2 birthweight-demeaned 1.20951e-09 0.997833 3 Childedu_demeaned 1.94812e-08 0.997833 Class Size and Means of each Continuous Variable 1 ONE_MALE_left 7 0.0414 -0.1484 -0.2357 0.0199 2 ONE_MALE_right 57 0.4103 -0.1914 0.2011 0.0575 3 ONE_FEMALE_right 55 -0.2195 0.1298 0.0951 0.0439 4 ZERO_MALE_left 6 0.0192 -0.0974 -0.6417 -0.5285 5 ZERO_MALE_right 51 0.3169 -0.3284 0.0151 0.1716 6 ZERO_FEMALE_right 55 -0.5070 0.4025 -0.2176 -0.2074 INFO: gd2mtx_method is dods Reading source surface //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/fsaverage/surf/lh.white Number of vertices 163842 Number of faces 327680 Total area 65417.000000 AvgVtxArea 0.399269 AvgVtxDist 0.721953 StdVtxDist 0.195472 7.2.0 cwd /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM cmdline mri_glmfit --y lh.volume.20.mgh --fsgd //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd --C //data/Ghana_MRI_Data_lmid/StructT1/su bjDir_FS_GHANA/Contrasts/GM_FM_ONE_minus_ZERO.mtx --C //data/Ghana_MRI_Data_lmid /StructT1/subjDir_FS_GHANA/Contrasts/GM_FM_ZERO_minus_ONE.mtx --surf fsaverage l h --cortex --glmdir lh.volume.20.glmdir sysname Linux hostname teenlab machine x86_64 user lmidriga FixVertexAreaFlag = 1 UseMaskWithSmoothing 1 OneSampleGroupMean 0 y /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM/lh.volume.20.mgh logyflag 0 usedti 0 FSGD //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd labelmask //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/fsaverage/label/lh.cortex.label maskinv 0 glmdir lh.volume.20.glmdir IllCondOK 0 ReScaleX 1 DoFFx 0 Creating output directory lh.volume.20.glmdir Loading y from /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM/lh.volume.20.mgh ... done reading. INFO: gd2mtx_method is dods Saving design matrix to lh.volume.20.glmdir/Xg.dat Computing normalized matrix Normalized matrix condition is 11.6545 Matrix condition is 248.273 Found 149955 points in label. Pruning voxels by thr: 1.175494e-38 Found 139725 voxels in mask Saving mask to lh.volume.20.glmdir/mask.mgh Reshaping mriglm->mask... search space = 69472.116311 error: MatrixReadTxT: could not scan value [1][1] ERROR: loading C //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/Contrasts/GM_FM_ONE_minus_ZERO.mtx gdfRead(): reading //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd INFO: DeMeanFlag keyword not found, DeMeaning will NOT be done. Continuous Variable Means (all subjects) 0 TICV_STAND 1.47157e-10 0.997833 1 c6_de-meaned 7.61185e-09 0.997833 2 birthweight-demeaned 1.20951e-09 0.997833 3 Childedu_demeaned 1.94812e-08 0.997833 Class Size and Means of each Continuous Variable 1 ONE_MALE_left 7 0.0414 -0.1484 -0.2357 0.0199 2 ONE_MALE_right 57 0.4103 -0.1914 0.2011 0.0575 3 ONE_FEMALE_right 55 -0.2195 0.1298 0.0951 0.0439 4 ZERO_MALE_left 6 0.0192 -0.0974 -0.6417 -0.5285 5 ZERO_MALE_right 51 0.3169 -0.3284 0.0151 0.1716 6 ZERO_FEMALE_right 55 -0.5070 0.4025 -0.2176 -0.2074 INFO: gd2mtx_method is dods Reading source surface //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/fsaverage/surf/lh.white Number of vertices 163842 Number of faces 327680 Total area 65417.000000 AvgVtxArea 0.399269 AvgVtxDist 0.721953 StdVtxDist 0.195472 7.2.0 cwd /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM cmdline mri_glmfit --y lh.thickness.20.mgh --fsgd //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd --C //data/Ghana_MRI_Data_lmid/StructT1 /subjDir_FS_GHANA/Contrasts/GM_FM_ONE_minus_ZERO.mtx --C //data/Ghana_MRI_Data_l mid/StructT1/subjDir_FS_GHANA/Contrasts/GM_FM_ZERO_minus_ONE.mtx --surf fsaverage lh --cortex --glmdir lh.thickness.20.glmdir sysname Linux hostname teenlab machine x86_64 user lmidriga FixVertexAreaFlag = 1 UseMaskWithSmoothing 1 OneSampleGroupMean 0 y /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM/lh.thickness.20.mgh logyflag 0 usedti 0 FSGD //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd labelmask //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/fsaverage/label/lh.cortex.label maskinv 0 glmdir lh.thickness.20.glmdir IllCondOK 0 ReScaleX 1 DoFFx 0 Creating output directory lh.thickness.20.glmdir Loading y from /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM/lh.thickness.20.mgh ... done reading. INFO: gd2mtx_method is dods Saving design matrix to lh.thickness.20.glmdir/Xg.dat Computing normalized matrix Normalized matrix condition is 11.6545 Matrix condition is 248.273 Found 149955 points in label. Pruning voxels by thr: 1.175494e-38 Found 139662 voxels in mask Saving mask to lh.thickness.20.glmdir/mask.mgh Reshaping mriglm->mask... search space = 69444.966835 error: MatrixReadTxT: could not scan value [1][1] ERROR: loading C //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/Contrasts/GM_FM_ONE_minus_ZERO.mtx gdfRead(): reading //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd INFO: DeMeanFlag keyword not found, DeMeaning will NOT be done. Continuous Variable Means (all subjects) 0 TICV_STAND 1.47157e-10 0.997833 1 c6_de-meaned 7.61185e-09 0.997833 2 birthweight-demeaned 1.20951e-09 0.997833 3 Childedu_demeaned 1.94812e-08 0.997833 Class Size and Means of each Continuous Variable 1 ONE_MALE_left 7 0.0414 -0.1484 -0.2357 0.0199 2 ONE_MALE_right 57 0.4103 -0.1914 0.2011 0.0575 3 ONE_FEMALE_right 55 -0.2195 0.1298 0.0951 0.0439 4 ZERO_MALE_left 6 0.0192 -0.0974 -0.6417 -0.5285 5 ZERO_MALE_right 51 0.3169 -0.3284 0.0151 0.1716 6 ZERO_FEMALE_right 55 -0.5070 0.4025 -0.2176 -0.2074 INFO: gd2mtx_method is dods Reading source surface //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/fsaverage/surf/rh.white Number of vertices 163842 Number of faces 327680 Total area 65020.855469 AvgVtxArea 0.396851 AvgVtxDist 0.717994 StdVtxDist 0.193570 7.2.0 cwd /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM cmdline mri_glmfit --y rh.volume.10.mgh --fsgd //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd --C //data/Ghana_MRI_Data_lmid/StructT1/su bjDir_FS_GHANA/Contrasts/GM_FM_ONE_minus_ZERO.mtx --C //data/Ghana_MRI_Data_lmid /StructT1/subjDir_FS_GHANA/Contrasts/GM_FM_ZERO_minus_ONE.mtx --surf fsaverage r h --cortex --glmdir rh.volume.10.glmdir sysname Linux hostname teenlab machine x86_64 user lmidriga FixVertexAreaFlag = 1 UseMaskWithSmoothing 1 OneSampleGroupMean 0 y /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM/rh.volume.10.mgh logyflag 0 usedti 0 FSGD //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd labelmask //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/fsaverage/label/rh.cortex.label maskinv 0 glmdir rh.volume.10.glmdir IllCondOK 0 ReScaleX 1 DoFFx 0 Creating output directory rh.volume.10.glmdir Loading y from /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM/rh.voume.10.mgh ... done reading. INFO: gd2mtx_method is dods Saving design matrix to rh.volume.10.glmdir/Xg.dat Computing normalized matrix Normalized matrix condition is 11.6545 Matrix condition is 248.273 Found 149926 points in label. Pruning voxels by thr: 1.175494e-38 Found 147407 voxels in mask Saving mask to rh.volume.10.glmdir/mask.mgh Reshaping mriglm->mask... search space = 73180.238940 error: MatrixReadTxT: could not scan value [1][1] ERROR: loading C //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/Contrasts/GM_FM_ONE_minus_ZERO.mtx gdfRead(): reading //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd INFO: DeMeanFlag keyword not found, DeMeaning will NOT be done. Continuous Variable Means (all subjects) 0 TICV_STAND 1.47157e-10 0.997833 1 c6_de-meaned 7.61185e-09 0.997833 2 birthweight-demeaned 1.20951e-09 0.997833 3 Childedu_demeaned 1.94812e-08 0.997833 Class Size and Means of each Continuous Variable 1 ONE_MALE_left 7 0.0414 -0.1484 -0.2357 0.0199 2 ONE_MALE_right 57 0.4103 -0.1914 0.2011 0.0575 3 ONE_FEMALE_right 55 -0.2195 0.1298 0.0951 0.0439 4 ZERO_MALE_left 6 0.0192 -0.0974 -0.6417 -0.5285 5 ZERO_MALE_right 51 0.3169 -0.3284 0.0151 0.1716 6 ZERO_FEMALE_right 55 -0.5070 0.4025 -0.2176 -0.2074 INFO: gd2mtx_method is dods Reading source surface //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/fsaverage/surf/rh.white Number of vertices 163842 Number of faces 327680 Total area 65020.855469 AvgVtxArea 0.396851 AvgVtxDist 0.717994 StdVtxDist 0.193570 7.2.0 cwd /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM cmdline mri_glmfit --y rh.thickness.10.mgh --fsgd //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd --C //data/Ghana_MRI_Data_lmid/StructT1 /subjDir_FS_GHANA/Contrasts/GM_FM_ONE_minus_ZERO.mtx --C //data/Ghana_MRI_Data_l mid/StructT1/subjDir_FS_GHANA/Contrasts/GM_FM_ZERO_minus_ONE.mtx --surf fsaverag e rh --cortex --glmdir rh.thickness.10.glmdir sysname Linux hostname teenlab machine x86_64 user lmidriga FixVertexAreaFlag = 1 UseMaskWithSmoothing 1 OneSampleGroupMean 0 y /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM/rh.thickness.10.mgh logyflag 0 usedti 0 FSGD //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd labelmask //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/fsaverage/label/rh.cortex.label maskinv 0 glmdir rh.thickness.10.glmdir IllCondOK 0 ReScaleX 1 DoFFx 0 Creating output directory rh.thickness.10.glmdir Loading y from /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM/rh.thickness.10.mgh ... done reading. INFO: gd2mtx_method is dods Saving design matrix to rh.thickness.10.glmdir/Xg.dat Computing normalized matrix Normalized matrix condition is 11.6545 Matrix condition is 248.273 Found 149926 points in label. Pruning voxels by thr: 1.175494e-38 Found 147347 voxels in mask Saving mask to rh.thickness.10.glmdir/mask.mgh Reshaping mriglm->mask... search space = 73157.645851 error: MatrixReadTxT: could not scan value [1][1] ERROR: loading C //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/Contrasts/GM_FM_ONE_minus_ZERO.mtx gdfRead(): reading //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd INFO: DeMeanFlag keyword not found, DeMeaning will NOT be done. Continuous Variable Means (all subjects) 0 TICV_STAND 1.47157e-10 0.997833 1 c6_de-meaned 7.61185e-09 0.997833 2 birthweight-demeaned 1.20951e-09 0.997833 3 Childedu_demeaned 1.94812e-08 0.997833 Class Size and Means of each Continuous Variable 1 ONE_MALE_left 7 0.0414 -0.1484 -0.2357 0.0199 2 ONE_MALE_right 57 0.4103 -0.1914 0.2011 0.0575 3 ONE_FEMALE_right 55 -0.2195 0.1298 0.0951 0.0439 4 ZERO_MALE_left 6 0.0192 -0.0974 -0.6417 -0.5285 5 ZERO_MALE_right 51 0.3169 -0.3284 0.0151 0.1716 6 ZERO_FEMALE_right 55 -0.5070 0.4025 -0.2176 -0.2074 INFO: gd2mtx_method is dods Reading source surface //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/fsaverage/surf/rh.white Number of vertices 163842 Number of faces 327680 Total area 65020.855469 AvgVtxArea 0.396851 AvgVtxDist 0.717994 StdVtxDist 0.193570 7.2.0 cwd /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM cmdline mri_glmfit --y rh.volume.15.mgh --fsgd //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd --C //data/Ghana_MRI_Data_lmid/StructT1/su bjDir_FS_GHANA/Contrasts/GM_FM_ONE_minus_ZERO.mtx --C //data/Ghana_MRI_Data_lmid /StructT1/subjDir_FS_GHANA/Contrasts/GM_FM_ZERO_minus_ONE.mtx --surf fsaverage r h --cortex --glmdir rh.volume.15.glmdir sysname Linux hostname teenlab machine x86_64 user lmidriga FixVertexAreaFlag = 1 UseMaskWithSmoothing 1 OneSampleGroupMean 0 y /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM/rh.volume.15.mgh logyflag 0 usedti 0 FSGD //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd labelmask //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/fsaverage/label/rh.cortex.label maskinv 0 glmdir rh.volume.15.glmdir IllCondOK 0 ReScaleX 1 DoFFx 0 Creating output directory rh.volume.15.glmdir Loading y from /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM/rh.volume.15.mgh ... done reading. INFO: gd2mtx_method is dods Saving design matrix to rh.volume.15.glmdir/Xg.dat Computing normalized matrix Normalized matrix condition is 11.6545 Matrix condition is 248.273 Found 149926 points in label. Pruning voxels by thr: 1.175494e-38 Found 147407 voxels in mask Saving mask to rh.volume.15.glmdir/mask.mgh Reshaping mriglm->mask... search space = 73180.238940 error: MatrixReadTxT: could not scan value [1][1] ERROR: loading C //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/Contrasts/GM_FM_ONE_minus_ZERO.mtx gdfRead(): reading //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd INFO: DeMeanFlag keyword not found, DeMeaning will NOT be done. Continuous Variable Means (all subjects) 0 TICV_STAND 1.47157e-10 0.997833 1 c6_de-meaned 7.61185e-09 0.997833 2 birthweight-demeaned 1.20951e-09 0.997833 3 Childedu_demeaned 1.94812e-08 0.997833 Class Size and Means of each Continuous Variable 1 ONE_MALE_left 7 0.0414 -0.1484 -0.2357 0.0199 2 ONE_MALE_right 57 0.4103 -0.1914 0.2011 0.0575 3 ONE_FEMALE_right 55 -0.2195 0.1298 0.0951 0.0439 4 ZERO_MALE_left 6 0.0192 -0.0974 -0.6417 -0.5285 5 ZERO_MALE_right 51 0.3169 -0.3284 0.0151 0.1716 6 ZERO_FEMALE_right 55 -0.5070 0.4025 -0.2176 -0.2074 INFO: gd2mtx_method is dods Reading source surface //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/fsavrage/surf/rh.white Number of vertices 163842 Number of faces 327680 Total area 65020.855469 AvgVtxArea 0.396851 AvgVtxDist 0.717994 StdVtxDist 0.193570 7.2.0 cwd /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM cmdline mri_glmfit --y rh.thickness.15.mgh --fsgd //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd --C //data/Ghana_MRI_Data_lmid/StructT1 /subjDir_FS_GHANA/Contrasts/GM_FM_ONE_minus_ZERO.mtx --C //data/Ghana_MRI_Data_l mid/StructT1/subjDir_FS_GHANA/Contrasts/GM_FM_ZERO_minus_ONE.mtx --surf fsaverag e rh --cortex --glmdir rh.thickness.15.glmdir sysname Linux hostname teenlab machine x86_64 user lmidriga FixVertexAreaFlag = 1 UseMaskWithSmoothing 1 OneSampleGroupMean 0 y /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM/rh.thickness.15.mgh logyflag 0 usedti 0 FSGD //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd labelmask //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/fsaverage/label/rh.cortex.label maskinv 0 glmdir rh.thickness.15.glmdir IllCondOK 0 ReScaleX 1 DoFFx 0 Creating output directory rh.thickness.15.glmdir Loading y from /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM/rh.thickness.15.mgh ... done reading. INFO: gd2mtx_method is dods Saving design matrix to rh.thickness.15.glmdir/Xg.dat Computing normalized matrix Normalized matrix condition is 11.6545 Matrix condition is 248.273 Found 149926 points in label. Pruning voxels by thr: 1.175494e-38 Found 147347 voxels in mask Saving mask to rh.thickness.15.glmdir/mask.mgh Reshaping mriglm->mask... search space = 73157.645851 error: MatrixReadTxT: could not scan value [1][1] ERROR: loading C //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/Contrasts/GM_FM_ONE_minus_ZERO.mtx gdfRead(): reading //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd INFO: DeMeanFlag keyword not found, DeMeaning will NOT be done. Continuous Variable Means (all subjects) 0 TICV_STAND 1.47157e-10 0.997833 1 c6_de-meaned 7.61185e-09 0.997833 2 birthweight-demeaned 1.20951e-09 0.997833 3 Childedu_demeaned 1.94812e-08 0.997833 Class Size and Means of each Continuous Variable 1 ONE_MALE_left 7 0.0414 -0.1484 -0.2357 0.0199 2 ONE_MALE_right 57 0.4103 -0.1914 0.2011 0.0575 3 ONE_FEMALE_right 55 -0.2195 0.1298 0.0951 0.0439 4 ZERO_MALE_left 6 0.0192 -0.0974 -0.6417 -0.5285 5 ZERO_MALE_right 51 0.3169 -0.3284 0.0151 0.1716 6 ZERO_FEMALE_right 55 -0.5070 0.4025 -0.2176 -0.2074 INFO: gd2mtx_method is dods Reading source surface //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/fsaverage/surf/rh.white Number of vertices 163842 Number of faces 327680 Total area 65020.855469 AvgVtxArea 0.396851 AvgVtxDist 0.717994 StdVtxDist 0.193570 7.2.0 cwd /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM cmdline mri_glmfit --y rh.volume.20.mgh --fsgd //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd --C //data/Ghana_MRI_Data_lmid/StructT1/su bjDir_FS_GHANA/Contrasts/GM_FM_ONE_minus_ZERO.mtx --C //data/Ghana_MRI_Data_lmid /StructT1/subjDir_FS_GHANA/Contrasts/GM_FM_ZERO_minus_ONE.mtx --surf fsaverage r h --cortex --glmdir rh.volume.20.glmdir sysname Linux hostname teenlab machine x86_64 user lmidriga FixVertexAreaFlag = 1 UseMaskWithSmoothing 1 OneSampleGroupMean 0 y /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM/rh.volume.20.mgh logyflag 0 usedti 0 FSGD //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd labelmask //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/fsaverage/label/rh.cortex.label maskinv 0 glmdir rh.volume.20.glmdir IllCondOK 0 ReScaleX 1 DoFFx 0 Creating output directory rh.volume.20.glmdir Loading y from /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM/rh.volume.20.mgh ... done reading. INFO: gd2mtx_method is dods Saving design matrix to rh.volume.20.glmdir/Xg.dat Computing normalized matrix Normalized matrix condition is 11.6545 Matrix condition is 248.273 Found 149926 points in label. Pruning voxels by thr: 1.175494e-38 Found 147407 voxels in mask Saving mask to rh.volume.20.glmdir/mask.mgh Reshaping mriglm->mask... search space = 73180.238940 error: MatrixReadTxT: could not scan value [1][1] ERROR: loading C //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/Contrasts/GM_FM_ONE_minus_ZERO.mtx gdfRead(): reading //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd INFO: DeMeanFlag keyword not found, DeMeaning will NOT be done. Continuous Variable Means (all subjects) 0 TICV_STAND 1.47157e-10 0.997833 1 c6_de-meaned 7.61185e-09 0.997833 2 birthweight-demeaned 1.20951e-09 0.997833 3 Childedu_demeaned 1.94812e-08 0.997833 Class Size and Means of each Continuous Variable 1 ONE_MALE_left 7 0.0414 -0.1484 -0.2357 0.0199 2 ONE_MALE_right 57 0.4103 -0.1914 0.2011 0.0575 3 ONE_FEMALE_right 55 -0.2195 0.1298 0.0951 0.0439 4 ZERO_MALE_left 6 0.0192 -0.0974 -0.6417 -0.5285 5 ZERO_MALE_right 51 0.3169 -0.3284 0.0151 0.1716 6 ZERO_FEMALE_right 55 -0.5070 0.4025 -0.2176 -0.2074 INFO: gd2mtx_method is dods Reading source surface //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/fsaverage/surf/rh.white Number of vertices 163842 Number of faces 327680 Total area 65020.855469 AvgVtxArea 0.396851 AvgVtxDist 0.717994 StdVtxDist 0.193570 7.2.0 cwd /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM cmdline mri_glmfit --y rh.thickness.20.mgh --fsgd //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd --C //data/Ghana_MRI_Data_lmid/StructT1 /subjDir_FS_GHANA/Contrasts/GM_FM_ONE_minus_ZERO.mtx --C //data/Ghana_MRI_Data_l mid/StructT1/subjDir_FS_GHANA/Contrasts/GM_FM_ZERO_minus_ONE.mtx --surf fsaverag e rh --cortex --glmdir rh.thickness.20.glmdir sysname Linux hostname teenlab machine x86_64 user lmidriga FixVertexAreaFlag = 1 UseMaskWithSmoothing 1 OneSampleGroupMean 0 y /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM/rh.thickness.20.mgh logyflag 0 usedti 0 FSGD //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/FSGD/FSGD_FM.fsgd labelmask //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/fsaverage/label/rh.cortex.label maskinv 0 glmdir rh.thickness.20.glmdir IllCondOK 0 ReScaleX 1 DoFFx 0 Creating output directory rh.thickness.20.glmdir Loading y from /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/glm_FM/rh.thickness.20.mgh ... done reading. INFO: gd2mtx_method is dods Saving design matrix to rh.thickness.20.glmdir/Xg.dat Computing normalized matrix Normalized matrix condition is 11.6545 Matrix condition is 248.273 Found 149926 points in label. Pruning voxels by thr: 1.175494e-38 Found 147347 voxels in mask Saving mask to rh.thickness.20.glmdir/mask.mgh Reshaping mriglm->mask... search space = 73157.645851 error: MatrixReadTxT: could not scan value [1][1] ERROR: loading C //data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/Contrasts/GM_FM_ONE_minus_ZERO.mtx ERROR: cannot find lh.thickness.10.glmdir/fwhm.dat ERROR: cannot find lh.thickness.15.glmdir/fwhm.dat ERROR: cannot find lh.thickness.20.glmdir/fwhm.dat ERROR: cannot find rh.thickness.10.glmdir/fwhm.dat ERROR: cannot find rh.thickness.15.glmdir/fwhm.dat ERROR: cannot find rh.thickness.20.glmdir/fwhm.dat ERROR: cannot find lh.volume.10.glmdir/fwhm.dat ERROR: cannot find lh.volume.15.glmdir/fwhm.dat ERROR: cannot find lh.volume.20.glmdir/fwhm.dat ERROR: cannot find rh.volume.10.glmdir/fwhm.dat ERROR: cannot find rh.volume.15.glmdir/fwhm.dat ERROR: cannot find rh.volume.20.glmdir/fwhm.dat