Does the file /home/vm01/local/freesurfer/Project_bold/rtopyTR2.rh/analysis.info exist? If so, can you run it with -debug as the first option and send the terminal output?


On 1/30/18 8:51 AM, Yagmur Ozdemir 19 wrote:


Hello FreeSurfer experts,

I am getting this strange error when running selxavg3-sess. (in selxavg3 command I am calling the analysis file with: -a rtopyTR2.rh) When the system enters fast_selxavg3, it cannot read analysis.info, thus produces the following output:

#@# Sess05 ###############################
/home/vm01/local/freesurfer/Project_bold/Sess05
-------------------------
$Id: fast_selxavg3b.m,v 1.4 2016/05/04 22:16:47 greve Exp $
-------------------------
outtop = /home/vm01/local/freesurfer/Project_bold
Extension format = nii.gz
ERROR: could not open rtopyTR2.rh/analysis.info
else
else
echo "------------------------------------------" | tee -a $LF
echo ------------------------------------------
tee -a /home/vm01/local/freesurfer/Project_bold/log/selxavg3-sess-bold-rtopyTR2.rh-180130082919.log
------------------------------------------
rm $MLF
rm /tmp/selxavg3-sess-10173.m
if ( ! -e $okfile ) then
if ( ! -e /tmp/selxavg3-sess-10173.ok ) then
echo "ERROR: fast_selxavg3() failed\n" ;
echo ERROR: fast_selxavg3() failed\n
ERROR: fast_selxavg3() failed\n
exit 1 ;
exit 1

The analysis folder it is referring to( rtopyTR2.rh) is in the directory from which I am calling selxavg3-sess. It has the analysis.info file in which doesn't have any restrictions. To troubleshoot, I moved the folder to inside the session's functional directory and inside the session folder and these didn't create any changes. I looked at the script and tried to debug there but didn't give any results. It gave a similar error when trying to open the config file of contrast in mkcontrast-sess. (I also don't have root access)Any help is appreciated!

Best,
Idil




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