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Try using $ instead of # to tell the linux shell to expand an environment variable, e.g., here to the path of where freesurfer was installed.

  echo $FREESURFER_HOME
<output will be path to where installed>

  source $FREESURFER_HOME/SetUpFreeSurfer.sh

- R.

On May 29, 2023, at 07:52, Pedro henrique barradas <phbarradas@hotmail.com> wrote:

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Hi everyone!

I am trying to run freesurfer on a windows machine using ubuntu but I am having trouble with the source command

When I try to source freesurfer i get the following message:

source #FREESURFERHOME/SetUpFreeSurfer.sh
-bash: source: filename argument required
source: usage: source filename [arguments]


Thank you very much


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