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Dear All, 

Due to my study, I have been unsuccessfully trying to co-register the hippocampal and amygdala segmented file (obtained from segmentHA_T2.sh) to my T1-weighted anatomical image (.nii), so that I can use the segmented file as a mask for later ROI analysis. However, despite trying in several ways with mri_robust_register and tkregister2, I have not been able to coregister the 2 together. Any suggestions?