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Hi,

 

I’m new to FreeSurfer and working my way through the tutorial on cluster correction for multiple comparisons. I encountered an error with the --perm flag at the simulation stage but I can’t find any help online regarding this.

 

Here is the code I run:

 

mri_glmfit-sim \

  --glmdir lh.gender_age.glmdir \

  --perm 1000 4.0 abs \

  --cwp  0.05\

  --2spaces \

  --bg 1

And this is the error message:

 

ERROR: Flag --perm unrecognized.

 

Kindly advice. I am working on a windows computer and running FreeSurfer via VirtualBox.

 

Thanks

Naa

 


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