Sat Sep  6 01:34:42 EDT 2014
/home/chia-ming/Desktop/freesurfer/subjects/Dickey-Pilot/mike_dickey
Desktop/freesurfer/bin/recon-all
-all -i Desktop/freesurfer/subjects/Dickey-Pilot/003/003-0001-00001-0.dcm -s mike_dickey
subjid mike_dickey
setenv SUBJECTS_DIR /home/chia-ming/Desktop/freesurfer/subjects/Dickey-Pilot
FREESURFER_HOME Desktop/freesurfer
Actual FREESURFER_HOME /home/chia-ming/Desktop/freesurfer
Linux chiaming-PORTEGE-R835 3.13.0-35-generic #62-Ubuntu SMP Fri Aug 15 01:58:42 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux
cputime      unlimited
filesize     unlimited
datasize     unlimited
stacksize    8192 kbytes
coredumpsize 0 kbytes
memoryuse    unlimited
vmemoryuse   unlimited
descriptors  1024 
memorylocked 64 kbytes
maxproc      62935 
maxlocks     unlimited
maxsignal    62935 
maxmessage   819200 
maxnice      0 
maxrtprio    0 
maxrttime    unlimited

             total       used       free     shared    buffers     cached
Mem:       8077332    2031720    6045612     224048     157244    1008468
-/+ buffers/cache:     866008    7211324
Swap:      8288252          0    8288252

########################################
program versions used
$Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 nicks Exp $
#######################################
GCADIR Desktop/freesurfer/average
GCA RB_all_2008-03-26.gca
GCASkull RB_all_withskull_2008-03-26.gca
AvgCurvTif average.curvature.filled.buckner40.tif
GCSDIR Desktop/freesurfer/average
GCS curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs
#######################################
/home/chia-ming/Desktop/freesurfer/subjects/Dickey-Pilot/mike_dickey

 mri_convert /home/chia-ming/Desktop/freesurfer/subjects/Dickey-Pilot/003/003-0001-00001-0.dcm /home/chia-ming/Desktop/freesurfer/subjects/Dickey-Pilot/mike_dickey/mri/orig/001.mgz 

mri_convert: Command not found.
Linux chiaming-PORTEGE-R835 3.13.0-35-generic #62-Ubuntu SMP Fri Aug 15 01:58:42 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux

recon-all -s mike_dickey exited with ERRORS at Sat Sep  6 01:34:42 EDT 2014

To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting



New invocation of recon-all 



Sat Sep  6 01:40:13 EDT 2014
/home/chia-ming/Desktop/freesurfer/subjects/Dickey-Pilot/mike_dickey
Desktop/freesurfer/bin/recon-all
-all -s mike_dickey
subjid mike_dickey
setenv SUBJECTS_DIR /home/chia-ming/Desktop/freesurfer/subjects/Dickey-Pilot
FREESURFER_HOME Desktop/freesurfer
Actual FREESURFER_HOME /home/chia-ming/Desktop/freesurfer
Linux chiaming-PORTEGE-R835 3.13.0-35-generic #62-Ubuntu SMP Fri Aug 15 01:58:42 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux
cputime      unlimited
filesize     unlimited
datasize     unlimited
stacksize    8192 kbytes
coredumpsize 0 kbytes
memoryuse    unlimited
vmemoryuse   unlimited
descriptors  1024 
memorylocked 64 kbytes
maxproc      62935 
maxlocks     unlimited
maxsignal    62935 
maxmessage   819200 
maxnice      0 
maxrtprio    0 
maxrttime    unlimited

             total       used       free     shared    buffers     cached
Mem:       8077332    2053212    6024120     228732     157588    1013408
-/+ buffers/cache:     882216    7195116
Swap:      8288252          0    8288252

########################################
program versions used
$Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 nicks Exp $
#######################################
GCADIR Desktop/freesurfer/average
GCA RB_all_2008-03-26.gca
GCASkull RB_all_withskull_2008-03-26.gca
AvgCurvTif average.curvature.filled.buckner40.tif
GCSDIR Desktop/freesurfer/average
GCS curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs
#######################################
#--------------------------------------------
#@# MotionCor Sat Sep  6 01:40:13 EDT 2014
ERROR: no run data found in /home/chia-ming/Desktop/freesurfer/subjects/Dickey-Pilot/mike_dickey/mri. Make sure to
have a volume called 001.mgz in  /home/chia-ming/Desktop/freesurfer/subjects/Dickey-Pilot/mike_dickey/mri/orig.
If you have a second run of data call it 002.mgz, etc.
See also: http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Conversion
Linux chiaming-PORTEGE-R835 3.13.0-35-generic #62-Ubuntu SMP Fri Aug 15 01:58:42 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux

recon-all -s mike_dickey exited with ERRORS at Sat Sep  6 01:40:13 EDT 2014

To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting