Dear experts,

I want to revisit if anyone has ran subfield analysis just by running samseg? If it is possible is it as reliable as from running regular routine with “-all” recon-all flag?

Thank you,

Sneha

From: Sneha Pandya
Sent: Thursday, April 30, 2020 4:15 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: samseg with subfields

Dear experts,

Is it possible to run subfield analysis (hippcampal subfields, amygdalar, thalamic nuclei, and brainstem structures) when we only run samseg on our dataset?

Thank you,

Sneha