Hello,
I know this problem has been discussed earlier, but I
think in my case the source of the problem might be
quite different. I'm running FS 5.3.0 and MATLAB
R2011a on Ubuntu machine with 12 GB RAM. selxavg3-sess
runs perfectly for both hemis, but I get the following
error when trying to run it on subcortical volume:
$Id: fast_selxavg3.m,v 1.100.2.2 2012/11/30 18:40:38
greve Exp $
/home/marcel/freesurfer/fsfast/toolbox/fast_selxavg3.m
/home/marcel/freesurfer/fsfast/toolbox/fast_ldanaflac.m
/home/marcel/freesurfer/matlab/MRIread.m
-------------------------
outtop = /media/2TB/SDT_MRI/FS
Extension format = nii.gz
1 DC_vs_HC.mat
2 HI_vs_DC.mat
3 HI_vs_HC.mat
4 NAT_vs_PAL.mat
5 NAT_vs_PAT.mat
6 PAL_vs_NAT.mat
7 PAL_vs_PAT.mat
nruns = 1
autostimdur =
outanadir =
/media/2TB/SDT_MRI/FS/AC1004/bold/sdt.sm8.mni
Found 52644/537168 ( 9.8) voxels in mask
Creating Design Matrix
... creation time = 0.007 sec
DoMCFit = 1
ntptot = 851, nX = 19, DOF = 832
Saving X matrix to
/media/2TB/SDT_MRI/FS/AC1004/bold/sdt.sm8.mni/Xtmp.mat
XCond = 31.0456 (normalized)
Computing compensation for resdual AR1 bias
1 -0.5 -0.500489 (t=0.097569)
2 -0.25 -0.255326 (t=0.427178)
3 0 -0.011955 (t=0.516085)
4 0.25 0.229273 (t=0.839369)
5 0.5 0.466983 (t=0.928175)
AR1 Correction M: 0.0147777 1.03322
Computing contrast matrices
OLS Beta Pass
run 1 t= 0.0
Global Mean 1120.98
Global In-Mask Mean = 1120.98 (983.432)
Rescale Target = 100
RescaleFactor = 0.0892077
OLS Residual Pass
run 1 t= 0.0
??? Out of memory. Type HELP MEMORY for your options.
Error in ==> fast_selxavg3 at 489
rsserun = sum(rrun.^2);
>> ------------------------------------------
I observed memory consuption with top(8) and noticed
that around 11 GBs are eaten after about 30 second of
running OLS residual pass. Do you think adding more
memory to the PC would solve the problem, or is it some
MATLAB/FS-related bug?