What is your command line? Try it on a single subject to see if it fails
doug

On 08/29/2013 02:00 PM, Pietro De Rossi wrote:

Hi Doug,

It doesn't seem it is failing on a particular subject...or I am not able to get it from the error. Futhermore, nothing changes if I use the --skip flag.
What does it mean when it says:

"List index out of range"?

Inviato da iPhone

Il giorno 29/ago/2013, alle ore 19:38, Douglas N Greve <greve@nmr.mgh.harvard.edu> ha scritto:

Is it failing on one particular subject?


On 08/29/2013 09:38 AM, pietro de rossi wrote:

Dear FreeSurfers,

I am extracting thickness values through the aparcstats2table command
line.

Everything works just fine for --hemi lh using the --skip flag.

However, when it comes to the right hemisphere I get

SUBJECTS_DIR : /usr/local/freesurfer/subjects
Parsing the .stats files
Traceback (most recent call last):
File "/usr/local/freesurfer/bin/aparcstats2table", line 321, in <module>
parc_measure_map = parsed.parse(options.meas)
File "/usr/local/freesurfer/bin/fsutils.py", line 194, in parse
parcid = strlist[0]
IndexError: list index out of range

I find it weird given that I am extracting thickness values for the
same subjects.

Can anybody help me find out what the problem is?

Thank you in advance,

Pietro

--
Pietro De Rossi, MD
-------------------------------------
Sapienza Università di Roma, Facoltà di Medicina e Psicologia,
Dipartimento NESMOS (Neuroscienze, Salute Mentale, Organi di Senso),
Ospedale Sant'Andrea, Via di Grottarossa 1035-1039, 00189 Roma

NESMOS Department (Neurosciences, Mental Health and Sensory
Functions), School of Medicine and Psychology, Sapienza University,
Sant’Andrea Hospital, Via di Grottarossa 1035-1039, 00189 Rome, Italy

Neurobehavioral Clinical Research Section, Social and Behavioral
Research Branch, National Human Genome Research Institute (NHGRI),
National Institutes of Health (NIH), Bethesda, Maryland 20892, USA


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--
Douglas N. Greve, Ph.D.
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