Dear Developers,


I am trying to run the mri_glmfit command and I get two different errors for two different subjects. Please find details below. I would be really grateful if you could provide any advice.



Error1 

setenv SUBJECTS_DIR ./

mri_glmfit --glmdir ./ --y lh.10.lgi.mgh --fsgd fsgd_test2.txt --no-contrasts-ok --surf subject1 lh

gdfReadHeader: reading fsgd_test2.txt

INFO: gd2mtx_method is dods

Reading source surface .//subject1/surf/lh.white

Number of vertices 167703

Number of faces    335402

Total area         108706.031250

AvgVtxArea       0.648206

AvgVtxDist       0.881642

StdVtxDist       0.250483

$Id: mri_glmfit.c,v 1.196.2.8 2012/11/01 18:51:41 greve Exp $

cwd /home/test

cmdline mri_glmfit --glmdir ./ --y lh.10.lgi.mgh --fsgd fsgd_test2.txt --no-contrasts-ok --surf subject1 lh 

sysname  Linux

hostname 

machine  x86_64

user     

FixVertexAreaFlag = 1

UseMaskWithSmoothing     1

OneSampleGroupMean 0

y    /home/test/lh.10.lgi.mgh

logyflag 0

usedti  0

FSGD fsgd_test2.txt

labelmask  .//subject1ii/label/lh.cortex.label

maskinv 0

glmdir ./

IllCondOK 0

ReScaleX 1

DoFFx 0

Creating output directory ./

Loading y from /home/test/lh.10.lgi.mgh

INFO: gd2mtx_method is dods

Saving design matrix to .//Xg.dat

Normalized matrix condition is 1

Matrix condition is 1

Found 158404 points in label.

ERROR: mri_reshape: number of elements cannot change

  nv1 = 167703, nv1 = 163842

Pruning voxels by thr: 0.000000

Found 163842 voxels in mask

Saving mask to .//mask.mgh

Reshaping mriglm->mask...

ERROR: mri_reshape: number of elements cannot change

  nv1 = 163842, nv1 = 167703

search space = 108705.102552

DOF = 0

ERROR: DOF = 0



Error 2
setenv SUBJECTS_DIR ./
mri_glmfit --glmdir ./ --y lh.10.lgi.mgh --fsgd fsgd_test2.txt --no-contrasts-ok --surf subject2 lh
gdfReadHeader: reading fsgd_test2.txt
INFO: gd2mtx_method is dods
Reading source surface .//subject2/surf/lh.white
Number of vertices 129318
Number of faces    258632
Total area         86174.742188
AvgVtxArea       0.666379
AvgVtxDist       0.893985
StdVtxDist       0.260921
$Id: mri_glmfit.c,v 1.196.2.8 2012/11/01 18:51:41 greve Exp $
cwd /home/test
cmdline mri_glmfit --glmdir ./ --y lh.10.lgi.mgh --fsgd fsgd_test2.txt --no-contrasts-ok --surf subject2 lh 
sysname  Linux
hostname 
machine  x86_64
user     
FixVertexAreaFlag = 1
UseMaskWithSmoothing     1
OneSampleGroupMean 0
y    /home/test/lh.10.lgi.mgh
logyflag 0
usedti  0
FSGD fsgd_test2.txt
labelmask  .//subject2/label/lh.cortex.label
maskinv 0
glmdir ./
IllCondOK 0
ReScaleX 1
DoFFx 0
Creating output directory ./
Loading y from /home/test/lh.10.lgi.mgh
INFO: gd2mtx_method is dods
Saving design matrix to .//Xg.dat
Normalized matrix condition is 1
Matrix condition is 1
Found 121215 points in label.
ERROR: mri_reshape: number of elements cannot change
  nv1 = 129318, nv1 = 163842
Pruning voxels by thr: 0.000000
Segmentation fault

Bets wishes,
Vasiliki