yes, that is correct. I'm attaching some power point slides that show a block diagram of the new stream.

doug

Clifford A. Smith, PhD wrote:

Newest stream With the most recent release, does the skullstripping take place with brainmask.auto.mgz and brainmask.mgz? After completing recon-all –autorecon-all I checked brain.mgz. I had some frontal areas missing, so ran recon-all -skullstrip -wsthresh 30. Brainmask.mgz looks good.

I believe that I know the answer, but to be safe, after running –autorecon2 brain.mgz will reflect these edits? Thanks, Cliff

------------------
Clifford Smith, PhD
Assistant Professor of Behavioral Sciences
Rush University Medical Center
312.942.2893
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358 
Fax: 617-726-7422
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting