Hi Jordan,

I'm not sure I understand your question. If you run -make all, it will run recon-all again starting at the earliest step in which there are files that were changed that affect that step. It will run all the way through to the end as each step affects the next one. This will change your stats which are produced in autorecon3.

Allison

On Apr 16, 2012, at 10:28 AM, Jordan Pierce <jepierce87@yahoo.com> wrote:

Hi,

We're trying to edit the aseg segmentation and reconstruct it. If we run 'recon-all -s subject -make all' does that depend on any information from the surfaces or brainmask volume, or are the stats independent of that?

Thank you,

Jordan Pierce
Graduate Student
Behavioral and Brain Sciences Program
Psychology Department
The University of Georgia

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