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Hello FreeSurfer Developers,
I'm attempting to compute calculate hippocampal volumes, as described on the MultiModal FMRI tutorial "Segmentation of hippocampal subfields"(https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfields), but I get the following error when I run the following command:
Command:recon-all -s subject -hippocampal-subfields-T1
Error:recon-all -s TNU_AIDAZ_3002_T1 exited with ERRORS at Mon Jun 22 15:42:08 JST 2020
(TNU_AIDAZ_3002_T1 is the subject name)
Does anyone have any thoughts on how to trouble-shoot this one? Also, Ive attached the recon-all.log in case it's of any use.Here are few contexts:a) I had the following command for recon-all for my subject:recon-all -i ${SUBJECTS_DIR}/subject_structual_image_file.nii -s subject -all -qcache -3Tb) this was done without an errorc) now I want to do "recon-all -s subject -hippocampal-subfields-T1"
1) FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.02) Platform: CentOS release 6.7 (Final)3) recon-all.log: see attached
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