On Thu, Jan 9, 2014 at 11:35 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu> wrote:

On 01/09/2014 05:15 PM, yaya ya wrote:
>
>
>
> On Thu, Jan 9, 2014 at 10:56 PM, Douglas N Greve

> <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> wrote:
>
>
> On 01/09/2014 04:42 PM, yaya ya wrote:
> > I am sorry for this misunderstanding.
> >
> > I am now performing surface-based analysis on my data, especially on
> > cortical thickness. Since when I did this analysis based on the
> whole
> > left or right hemisphere, the results were not very good.
> >
> > That is why I want to limit my cortical thickness analysis / surface
> > based analysis into a brain region in order to improve the power.
> >
> > So, my question is how to build a surface mask of a brain area
> (e.g.,
> > left insula) to do what I want to do (performing thickness only in
> > this mask rather than the whole left or right hemisphere).
> >
> > I hope that what I described is more clear this time.
> Yes, then use the method I described to get a label of insula
>
>
> Ok, I now know how to do it.
>
> >
> > By the way, what do you mean by "You would only use a brain mask or
> > a surface mask for a volume-based analysis"? My understanding is
> that
> > I could use a brain mask or a surface mask to do a volume-based
> > analysis on the cortical or subcortical area. But I could only use
> > surface mask to do cortical thickness or cortical area analysis,
> right?
> Depends on what you mean by a "surface mask". Usually a mask is a data
> structure with 1s were you want to analyze and 0s everywhere else.
> For a
> surface-based analysis, you don't need a surface mask because it
> is all
> surface.
> >
>
>
> Based on your further description, my understanding is that I could
> use the mask created using the method you desribed before. Then when I
> do analysis (with the mask) using mri_glmfit, I could use the volume
> or area or thickness. In other words, the mask created applies to all
> these situations.
>
> Am I right?

Yes, if by "volume" you mean "lh.volume" and not a 3D data structure

> >
> >
> >
> > On Thu, Jan 9, 2014 at 10:30 PM, Douglas N Greve
> > <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>

> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>> wrote:
> >
> >
> > I'm still not sure I understand what you are doing. Is it a
> > volume-based
> > analysis or a surface-based analysis? You would only use a brain
> > mask or
> > a surface mask for a volume-based analysis.
> > doug
> >
> >
> > On 01/09/2014 04:15 PM, yaya ya wrote:
> > > Thank you very much for your patience, douglas.
> > >
> > > I just want to create a surface mask. What you said is use
> > > mri_annotation2label to create a surface mask. Then when do
> > mri_glmfit
> > > analysis on the surface, I need to use the flag --label my
> > surface mask.
> > >
> > > If my understanding is wrong, don't hesitate to tell me.
> > >
> > > By the way, if I want to do a volume mask, which command do I
> > need to
> > > use?
> > >
> > > Thanks again.
> > >
> > >
> > > On Thu, Jan 9, 2014 at 10:02 PM, Douglas N Greve
> > > <greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>

> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>> wrote:
> > >
> > >
> > > Is this an analysis of volume/voxel data or surface/vertex
> > data? If
> > > surface, then you'll need to extract the left insula
> label from
> > > lh.aparc.annot (use mri_annotation2label), then pass this
> > label to
> > > mri_glmfit with --label
> > >
> > > doug
> > >
> > >
> > > On 01/09/2014 03:52 PM, yaya ya wrote:
> > > > Thanks, Doug.
> > > >
> > > > I just searched the list to find how to generate a mask.
> > Let us say
> > > > the surface of the left insula.
> > > >
> > > > It seems that I need to use mri_mask command and the
> brain
> > which
> > > I use
> > > > to get the mask should be brainmask.mgz in the
> fsaverage,
> > right?
> > > >
> > > > Then I use this mask in mri_glmfit command.
> > > >
> > > > Any suggstions, feel free to let me know.
> > > >
> > > >
> > > > On Thu, Jan 9, 2014 at 9:13 PM, Douglas N Greve
> > > > <greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>>

> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>>> wrote:
> > > >
> > > >

> > > > On 01/09/2014 02:18 PM, yaya ya wrote:
> > > > > Dear Doug,
> > > > >
> > > > > I am sorry. It is my first time to post the
> message in
> > > this way.
> > > > I am
> > > > > now used to it:)
> > > > >
> > > > > The results from the contrast 0 0 1 -1 did not
> > survive the
> > > multiple
> > > > > comparision corrections. In other words, I
> guess that it
> > > should
> > > > imply
> > > > > that I could try DOSS.
> > > > >
> > > > > If my thought is wrong, please feel free to
> let me know.
> > > > You are correct.
> > > > >
> > > > > By the way, is it possible to do SVC (small volume
> > > correction) using
> > > > > an anatomical image from a particular brain
> region,
> > which
> > > is the
> > > > > conventional way to improve statistical power?
> > > > You can specify a mask for an ROI when you run
> mri_glmfit.
> > > But that
> > > > means you have to run your own simulation to do the
> > correction.
> > > > doug
> > > >
> > > >
> > > > >
> > > > > Thanks, again.
> > > > >
> > > > >
> > > > > On Thu, Jan 9, 2014 at 6:23 PM, Douglas N Greve
> > > > > <greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>
> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>>

> > > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>
> > > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>>>> wrote:
> > > > >
> > > > >
> > > > > Please remember to post to the list. For
> the 0 0
> > 1 -1
> > > contrast,
> > > > > did any results survive multiple comparisons
> > > correction? If so,
> > > > > then at least the voxels in that region cannot
> > be used
> > > with
> > > > DOSS.
> > > > > I'm not sure why the patter was opposite
> between
> > the two
> > > > > contrasts. I could mean that there is a
> nonlinear
> > > relationship
> > > > > with age.
> > > > >
> > > > > doug
> > > > >
> > > > >
> > > > > On 01/09/2014 03:54 AM, yaya ya wrote:
> > > > >
> > > > > Dear Greve,
> > > > >
> > > > > Thank you very much for your response.
> I am
> > now a
> > > little
> > > > more
> > > > > clear, although I still have some further
> > questions.
> > > > >
> > > > > According to your suggestion, I just tried
> > to test
> > > whether
> > > > > there is a difference between group age. I
> > > included age as a
> > > > > continuous variable in qdec. After
> running,
> > I got the
> > > > results
> > > > > arising from the contrast 0 0 1 -1
> (which is
> > > called does the
> > > > > thickness-age correlation differ
> between two
> > > groups?). That
> > > > > is, the results revealed the thinner
> in some
> > brain
> > > > areas. But
> > > > > when I checked the results relating to the
> > > comparision of
> > > > > groups (1 -1 0 0 ), the results were
> the same
> > > expect the
> > > > > opposite pattern. That is, the results
> became
> > > thicker in the
> > > > > same region.
> > > > >
> > > > > Does this imply that there is an age
> effect? It
> > > means I
> > > > could
> > > > > not use DOSS to do analysis, right?
> > > > >
> > > > > Best,
> > > > > Lickey
> > > > >
> > > > >
> > > > > On Thu, Jan 9, 2014 at 12:32 AM,
> Douglas N Greve
> > > > > <greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>
> > > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>>
> > > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>
> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
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> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>>>
> > > > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>
> > > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>>
> > > > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>
> > > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>>>>> wrote:
> > > > >
> > > > >
> > > > > On 01/08/2014 04:28 PM, yaya ya wrote:
> > > > > > Dear Freesurfer experts,
> > > > > >
> > > > > > I have a question about cortical
> thickness
> > > > analysis using
> > > > > freesurfer.
> > > > > > Since I don't know how to post my
> > question in
> > > > freesurfer
> > > > > mailing
> > > > > > list, that is why I am writing
> to you to
> > > get some
> > > > help.
> > > > > Hopefully, my
> > > > > > email will not cause you any
> troubles.
> > > > > Thanks for posting to the list.
> > > > > >
> > > > > > My question is : When I compared
> thickness
> > > from two
> > > > > groups (a
> > > > > patient
> > > > > > group and a healthy contrl group),
> > that is say I
> > > > got the
> > > > > thinner
> > > > > in a
> > > > > > subdivision of a particular brain
> > region in
> > > patients
> > > > > than that in
> > > > > > controls. But when I added age as a
> > nusiance
> > > factors
> > > > > (not in the
> > > > > > continuous covariate because I
> want to
> > > control for or
> > > > > regress
> > > > > out the
> > > > > > age effect) in qdec, the results
> > changed. In
> > > the same
> > > > > region, the
> > > > > > thickness became thicker in the
> patients
> > > than that
> > > > in the
> > > > > controls. I
> > > > > > have no idea what happened. Which of
> > them do
> > > I need to
> > > > > trust?
> > > > > The age
> > > > > > between two groups has been matched.
> > > > > It depends on several things. It might
> > be that
> > > there
> > > > is an
> > > > > interaction
> > > > > between group and age. Try testing
> for a
> > > difference
> > > > > between the age
> > > > > slopes of the two groups. If there
> is no
> > > difference,
> > > > then
> > > > > re-run using
> > > > > DOSS (DOSS was removed from QDEC so
> > you'll have to
> > > > create
> > > > > an FSGD file
> > > > > and use mri_glmfit).
> > > > > >
> > > > > > In addition, when I do FDR
> correction
> > on the
> > > results,
> > > > > the min in the
> > > > > > threshold jumped to more than 5 ,
> > making all the
> > > > clusters
> > > > > disappear. I
> > > > > > think this correction is too high,
> > unabling the
> > > > genious
> > > > > effects to
> > > > > > show up. How to deal with it?
> > > > > Try using a cluster correction instead
> > of FDR.
> > > > > doug
> > > > >
> > > > > >
> > > > > > By the way, our lab's IT staffs
> > install the
> > > > lastest released
> > > > > > freesurfer. But when I use the
> qdec, I
> > could
> > > not find
> > > > > the option of
> > > > > > DODS and DOSS, as discussed in
> the mailing
> > > list. I am
> > > > > wondering
> > > > > if it
> > > > > > has been deleted in this new
> version.
> > > > > >
> > > > > > I really appreciate your help in
> advance.
> > > > > >
> > > > > > Best,
> > > > > > Lickey
> > > > > >
> > > > > >
> > > > > >
> > _______________________________________________
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> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>>>
> > > > >
> > > > > >
> > > >
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> > > > >
> > > > > --
> > > > > Douglas N. Greve, Ph.D.
> > > > > MGH-NMR Center
> > > > > greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>
> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>>
> > > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>
> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>>>
> > > > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>
> > > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>>
> > > > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>
> > > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>>>>
> > > > > Phone Number: 617-724-2358
> <tel:617-724-2358>
> > <tel:617-724-2358 <tel:617-724-2358>> <tel:617-724-2358
> <tel:617-724-2358> <tel:617-724-2358 <tel:617-724-2358>>>
> > > <tel:617-724-2358 <tel:617-724-2358> <tel:617-724-2358
> <tel:617-724-2358>> <tel:617-724-2358 <tel:617-724-2358>
> > <tel:617-724-2358 <tel:617-724-2358>>>>
> > > > <tel:617-724-2358 <tel:617-724-2358>
> <tel:617-724-2358 <tel:617-724-2358>> <tel:617-724-2358
> <tel:617-724-2358>
> > <tel:617-724-2358 <tel:617-724-2358>>> <tel:617-724-2358
> <tel:617-724-2358>
> > > <tel:617-724-2358 <tel:617-724-2358>>>>
> > > > > <tel:617-724-2358 <tel:617-724-2358>
> > <tel:617-724-2358 <tel:617-724-2358>>
> > > <tel:617-724-2358 <tel:617-724-2358> <tel:617-724-2358
> > <tel:617-724-2358>>> <tel:617-724-2358
> > > <tel:617-724-2358>
> > > > <tel:617-724-2358 <tel:617-724-2358>>>>
> > > > > Fax: 617-726-7422 <tel:617-726-7422>
> > > <tel:617-726-7422 <tel:617-726-7422>>
> > > > <tel:617-726-7422 <tel:617-726-7422>
> <tel:617-726-7422
> > > <tel:617-726-7422>>> <tel:617-726-7422
> > > > <tel:617-726-7422>
> > > > > <tel:617-726-7422 <tel:617-726-7422>>>
> > > > >
> > > > > Bugs:
> > > surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> > > >
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> > > > >
> > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> > > > >
> > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> > > > > FileDrop:
> > > https://gate.nmr.mgh.harvard.edu/filedrop2
> > > > >
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> > >
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> > > >
> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> > > > >
> > > >
> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> > > > >
> > > >
> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> > > > >
> > > > > Outgoing:
> > > > >
> > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> > > > >
> > > > > _______________________________________________
> > > > > Freesurfer mailing list
> > > > > Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
> > > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
> > > > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
> > > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>>
> > > > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
> > > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
> > > > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
> > > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>>>
> > > > >
> > > > >
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> > > > >
> > > > >
> > > > > The information in this e-mail is
> intended
> > > only for the
> > > > > person to
> > > > > whom it is
> > > > > addressed. If you believe this e-mail
> > was sent
> > > to you in
> > > > > error and
> > > > > the e-mail
> > > > > contains patient information, please
> > contact the
> > > > Partners
> > > > > Compliance HelpLine at
> > > > > http://www.partners.org/complianceline . If the
> > e-mail was
> > > sent to
> > > > > you in error
> > > > > but does not contain patient
> > information, please
> > > > contact the
> > > > > sender and properly
> > > > > dispose of the e-mail.
> > > > >
> > > > >
> > > > >
> > > > > --
> > > > > Douglas N. Greve, Ph.D.
> > > > > MGH-NMR Center
> > > > > greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>
> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>>
> > > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>
> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>>>
> > > > > Phone Number: 617-724-2358 <tel:617-724-2358>
> > > > <tel:617-724-2358 <tel:617-724-2358>>

> > > > > Fax: 617-726-7422 <tel:617-726-7422>
> > <tel:617-726-7422
> > > > <tel:617-726-7422>>
> > > > >
> > > > > Bugs:
> > surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> > > >
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> > > > >

> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> > > > > FileDrop:
> https://gate.nmr.mgh.harvard.edu/filedrop2
> > > > >
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> > >
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> > > >
> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> > > > >
> > >
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> > > > > Outgoing:
> > > > >
> > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> > > > >
> > > > >
> > > > >
> > > > >
> > > > > _______________________________________________
> > > > > Freesurfer mailing list
> > > > > Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
> > > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
> > > > >

> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> > > >
> > > > --
> > > > Douglas N. Greve, Ph.D.
> > > > MGH-NMR Center
> > > > greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>>
> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>>

> > > > Phone Number: 617-724-2358
> > > > Fax: 617-726-7422
> > > >
> > > > Bugs:
> surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> > > >

> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> > > > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
> > > > www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> > >
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> > > >
> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> > > > Outgoing:
> > > >
> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> > > >
> > > > _______________________________________________
> > > > Freesurfer mailing list
> > > > Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>

> > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
> > > >
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> > > >
> > > >
> > > >
> > > >

> > > > _______________________________________________
> > > > Freesurfer mailing list
> > > > Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
> > > >
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> > >
> > > --
> > > Douglas N. Greve, Ph.D.
> > > MGH-NMR Center
> > > greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>>
> > > Phone Number: 617-724-2358
> > > Fax: 617-726-7422
> > >
> > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> > > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
> > > www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> > >
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> > > Outgoing:
> > > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> > >
> > > _______________________________________________
> > > Freesurfer mailing list
> > > Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> > >
> > >
> > >
> > >
> > > _______________________________________________
> > > Freesurfer mailing list
> > > Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >
> > --
> > Douglas N. Greve, Ph.D.
> > MGH-NMR Center
> > greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>
> > Phone Number: 617-724-2358
> > Fax: 617-726-7422
> >
> > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
> > www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> > Outgoing:
> > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> >
> > _______________________________________________
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >
> >
> >
> >
> > _______________________________________________
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
> Phone Number: 617-724-2358
> Fax: 617-726-7422
>
> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> Outgoing:
> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer