Hi,
I am running Ubuntu 8.04 and freesurfer V4.3.0. It worked well once upon a time.
However, I get this error about the mghRead as follows.
~$ recon-all -autorecon1 -s liwentao_1 -i /mnt/data2/data/trauma/liwentao_1.mgz
Subject Stamp: freesurfer-Linux-centos4-stable-pub-v4.3.0
Current Stamp: freesurfer-Linux-centos4-stable-pub-v4.3.0
INFO: SUBJECTS_DIR is /usr/local/freesurfer/subjects
Actual FREESURFER_HOME /usr/local/freesurfer
Linux nica 2.6.24-24-generic #1 SMP Tue Jul 7 19:46:39 UTC 2009 i686 GNU/Linux
/usr/local/freesurfer/subjects/liwentao_1
mri_convert /mnt/data2/data/trauma/liwentao_1.mgz /usr/local/freesurfer/subjects/liwentao_1/mri/orig/001.mgz
mri_convert /mnt/data2/data/trauma/liwentao_1.mgz /usr/local/freesurfer/subjects/liwentao_1/mri/orig/001.mgz
mghRead: encountered error executing: 'zcat /mnt/data2/data/trauma/liwentao_1.mgz',frame -1,errno=38
$Id: mri_convert.c,v 1.146.2.4 2009/01/30 02:30:42 nicks Exp $
reading from /mnt/data2/data/trauma/liwentao_1.mgz...
Linux nica 2.6.24-24-generic #1 SMP Tue Jul 7 19:46:39 UTC 2009 i686 GNU/Linux
recon-all exited with ERRORS at Fri Jul 31 09:20:08 CST 2009
I try to run it step by step:
~$ mri_convert /mnt/data2/data/trauma/liwentao_1.mgz /usr/local/freesurfer/subjects/liwentao_1/mri/orig/001.mgz
mri_convert /mnt/data2/data/trauma/liwentao_1.mgz /usr/local/freesurfer/subjects/liwentao_1/mri/orig/001.mgz
$Id: mri_convert.c,v 1.146.2.4 2009/01/30 02:30:42 nicks Exp $
reading from /mnt/data2/data/trauma/liwentao_1.mgz...
mghRead: encountered error executing: 'zcat /mnt/data2/data/trauma/liwentao_1.mgz',frame -1,errno=38
There is sufficient disk space for freesurfer running. I searched the mail-archive and noticed the potential solutions. But it doesn't work.
Any suggestion is appreciated!
--
Albert
Lab of Complex System and Artificial Intelligence,
Institute of Automation,Chinese Academy of Sciences(CASIA)
Beijing, 100190,P.R.CHINA