Thanks for your response. the editing was done in freeview. I saved the edited version as wm.edited.mgz, then copy the wm.edited.mgz to wm.mgz. is that the problem? Is it necessary to save the edited wm.mgz as wm.mgz in freeview?
I hope it is clear what I did.
Hi Xiaomin
how did you edit wm.mgz? If within tkmedit (or "recon editing" in freeview)
and you reran recon-all it should have preserved your edits, even though it
regenerated the file. Have you checked?
Bruce
On Fri, 25 Jul 2014, Xiaomin Yue wrote:
> Hi,
>
> My edited wm.mgz was saved as wm.edited.mgz, then it copied to wm.mgz. I re-run the anlysis using
> recon-all -s cologna -autorecon2-wm. From some reason, the analysis regenerated wm.mgz from brain.mgz,
> which of course replaced my edited wm.mgz. Did I do some wrong here?
>
> Thanks,
> Xiaomin
>
>