Hi Paul

you need to look at the rh.orig.nofix and rh.inflated.nofix. Typically something big is wrong like skull attached to brain or something

cheers
Bruce

On Fri, 19 May 2017, miracle ozzoude wrote:

Hello Freesurfer expert, While running recon-all on one of my subjects, the
pipeline got stuck during the "fix topology rh" stage for almost 12hrs. How
do I diagnosis the problem and fix it? I have attached the recon-all.log
file. Thank you
Best, 
Paul

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